Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63323194
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1953226 characters in sequence are not A, C, G, or T
File 72 of 199
Found at i:26737606 original size:41 final size:41
Alignment explanation
Indices: 26737549--26737660 Score: 170
Period size: 41 Copynumber: 2.7 Consensus size: 41
26737539 ACCTTTCGGT
* *
26737549 GCTTTAGTGGCGTTTTTAAAAAAGCGCCGCTAATGCTAAGG
1 GCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTAAGG
* * * *
26737590 GCTTTAGCGGCATTTTTGGAGAAGCGCCGCTAATGCTCAGG
1 GCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTAAGG
26737631 GCTTTAGCGGCGTTTTTGAAAAAGCGCCGC
1 GCTTTAGCGGCGTTTTTGAAAAAGCGCCGC
26737661 AAAAACATTT
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 62 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (41 bp):
GCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTAAGG
Found at i:26737695 original size:20 final size:20
Alignment explanation
Indices: 26737667--26737704 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
26737657 CCGCAAAAAC
*
26737667 ATTTTATTTGTCTATTTACT
1 ATTTAATTTGTCTATTTACT
*
26737687 ATTTAATTTGTTTATTTA
1 ATTTAATTTGTCTATTTA
26737705 ATTATATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.66
Consensus pattern (20 bp):
ATTTAATTTGTCTATTTACT
Found at i:26738335 original size:21 final size:21
Alignment explanation
Indices: 26738300--26738356 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
26738290 TATATTAAAT
* *
26738300 AAGGTTTAGGGGTTAGTAGTTA
1 AAGG-TTAAGGGTTAGGAGTTA
*
26738322 AAGGTTAAGGGTTAGGGGTTA
1 AAGGTTAAGGGTTAGGAGTTA
* *
26738343 GAGGTTAAGAGTTA
1 AAGGTTAAGGGTTA
26738357 ATGATTTAGG
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 26 0.87
22 4 0.13
ACGTcount: A:0.30, C:0.00, G:0.39, T:0.32
Consensus pattern (21 bp):
AAGGTTAAGGGTTAGGAGTTA
Found at i:26739138 original size:31 final size:31
Alignment explanation
Indices: 26739103--26739167 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
26739093 CATTTAATCA
*
26739103 TTTATTTTTTATTAAAATATATGATATTTAT
1 TTTATTTTTTATTAAAATATATAATATTTAT
26739134 TTTATTTTTTATTAAAATATATAATATTTAT
1 TTTATTTTTTATTAAAATATATAATATTTAT
26739165 TTT
1 TTT
26739168 GAGAGTACTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (31 bp):
TTTATTTTTTATTAAAATATATAATATTTAT
Found at i:26739848 original size:3 final size:3
Alignment explanation
Indices: 26739840--26739874 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
26739830 CATTGAGCTG
26739840 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
26739875 TTGATTAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:26742263 original size:5 final size:5
Alignment explanation
Indices: 26742253--26742278 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
26742243 TTTAAATTTG
26742253 AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT A
26742279 CAAACCAAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:26743957 original size:43 final size:43
Alignment explanation
Indices: 26743886--26744218 Score: 434
Period size: 43 Copynumber: 7.7 Consensus size: 43
26743876 GATATGTTTT
* * * * * *
26743886 TAGCGGTGTTTTTGCGAGAAGCGTCGCTAAAGGTCATGGCCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTA
* * *
26743929 TAGCGGCGTTTGTGGGAAAAACGCCGCTAAAGATCATGGTCTT
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTA
*
26743972 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGCCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTA
* * * *
26744015 TAGCGGCGTTTGTGAGAAAAGCACTGCTAAAGGTCATGGTCTT
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTA
*
26744058 TAGCGGCGTTTGTGGGAAGAGCGCCGCTAAAGGTCATGGTC-A
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTA
* * * *
26744100 TTAGCGGCGTTTGTGGGAAGAGCGCCGTTAAAGCTCATGATCTA
1 -TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTA
* **
26744144 TAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTTGTGGTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTA
* *
26744187 TAGCGACGTTTGTGGGAAAAGCGCCGCAAAAG
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAG
26744219 TTAGCGACGC
Statistics
Matches: 252, Mismatches: 36, Indels: 4
0.86 0.12 0.01
Matches are distributed among these distances:
43 251 1.00
44 1 0.00
ACGTcount: A:0.24, C:0.18, G:0.34, T:0.25
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTA
Found at i:26746119 original size:44 final size:43
Alignment explanation
Indices: 26746060--26746667 Score: 388
Period size: 44 Copynumber: 14.1 Consensus size: 43
26746050 ATCTGATGCG
26746060 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGCGATTTTA
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTG-GATTTTA
* * * * * *
26746104 ATCAGCTCCACTGCAACATCAGGGAGATAGGAT-T-GACTTCTTCT
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGGA-TT-TT-A
* * ***
26746148 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTGGA-TGCG
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGGATTTTA
*
26746189 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATGATTTTA
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCT-GGATTTTA
* * * * * *
26746233 ATCCGCTCTACTGCAACTTTAGGGAGATAGGA-CTGGTTTCTTCT
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGGATT-TT-A
* * ***
26746277 GTCTGCTCCACTGCAACTTCAG-G-GATAAGA-CTGGA-TGCG
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGGATTTTA
* * *
26746316 ATCTGTTCTACTGCAACTTCAGAGAGATAGGAT-TGG-TTTCTGCT
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGGATTT-T--A
* * * *
26746360 GTGTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGATTTTA
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTG-GATTTTA
* * * * *
26746404 ATCCGCTCTACTGTAACTTCAGAGAGATAGGAT-TGGTTTCTTCT
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGGATT-TT-A
* * * * * ***
26746448 GTCTTCTCCACTGTAACTTCA-AGGAGATAATA-CTGGA-TGCG
1 ATCTGCTCTACTGCAACTTCAGA-GAGATAAGATCTGGATTTTA
*
26746489 ATCTGTTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTA
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTG-GATTTTA
* * * * *
26746533 ATCCGCTCTACTGTAACTTCAGAGAGATAGGAT-TGGTTTCTTCT
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGGATT-TT-A
* * * * * * ***
26746577 GTCTACTCCACTACAACTTCAGGGAGATAAGA-CTGG-GTACG
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGGATTTTA
*
26746618 ATCTGCTCTACTGCAACTTCAGAAAGATAAGATCTGCGATTTTCA
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTG-GATTTT-A
26746663 ATCTG
1 ATCTG
26746668 TTTAACTGCG
Statistics
Matches: 425, Mismatches: 104, Indels: 69
0.71 0.17 0.12
Matches are distributed among these distances:
39 19 0.04
40 1 0.00
41 93 0.22
42 30 0.07
43 25 0.06
44 243 0.57
45 9 0.02
46 2 0.00
47 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.31
Consensus pattern (43 bp):
ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGGATTTTA
Found at i:26746284 original size:129 final size:127
Alignment explanation
Indices: 26746054--26746344 Score: 465
Period size: 129 Copynumber: 2.3 Consensus size: 127
26746044 AATAAAATCT
*
26746054 GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGCGATTTTAATCAGCTCCACTGCA
1 GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTACGATTTTAATCAGCTCCACTGCA
*
26746119 ACATCAGGGAGATAGGATTGACTTCTTCTATCTGCTCCACTGCAACTTCAGGGAGATAAGACTG
66 ACATCAGGGAGATAGGACTGACTTCTTCTATCTGCTCCACTGCAACTTCA-GG-GATAAGACTG
* * *
26746183 GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATGATTTTAATCCGCTCTACTGCA
1 GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTACGATTTTAATCAGCTCCACTGCA
* * ** *
26746248 ACTTTAGGGAGATAGGACTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGGATAAGACTG
66 ACATCAGGGAGATAGGACTGACTTCTTCTATCTGCTCCACTGCAACTTCAGGGATAAGACTG
*
26746310 GATGCGATCTGTTCTACTGCAACTTCAGAGAGATA
1 GATGCGATCTGCTCTACTGCAACTTCAGAGAGATA
26746345 GGATTGGTTT
Statistics
Matches: 151, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
127 44 0.29
128 2 0.01
129 105 0.70
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (127 bp):
GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTACGATTTTAATCAGCTCCACTGCA
ACATCAGGGAGATAGGACTGACTTCTTCTATCTGCTCCACTGCAACTTCAGGGATAAGACTG
Found at i:26746378 original size:127 final size:127
Alignment explanation
Indices: 26746054--26746388 Score: 442
Period size: 129 Copynumber: 2.6 Consensus size: 127
26746044 AATAAAATCT
*
26746054 GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGCGATTTTAATCAGCTCCACTGCA
1 GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATATG-G-TTTTAATCAGCTCCACTGCA
* *
26746119 ACATCAGGGAGATAGGATTGACTTCTTCTATCTGCTCCACTGCAACTTCAGGGAGATAAGACTG
64 ACTTCAGGGAGATAGGACTGACTTCTTCTATCTGCTCCACTGCAACTTCAGGGAGATAAGACTG
* * *
26746183 GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATGATTTTAATCCGCTCTACTGCA
1 GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGA--TATGGTTTTAATCAGCTCCACTGCA
* ** *
26746248 ACTTTAGGGAGATAGGACTGGTTTCTTCTGTCTGCTCCACTGCAACTTCA-GG-GATAAGACTG
64 ACTTCAGGGAGATAGGACTGACTTCTTCTATCTGCTCCACTGCAACTTCAGGGAGATAAGACTG
* * ** **
26746310 GATGCGATCTGTTCTACTGCAACTTCAGAGAGATAGGAT-TGGTTTCTGCTGTGTGCTCCACTGC
1 GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATATGGTTT-T--AATCAGCTCCACTGC
26746374 AACTTCAGGGAGATA
63 AACTTCAGGGAGATA
26746389 AGATCTGTGA
Statistics
Matches: 182, Mismatches: 19, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
124 5 0.03
125 2 0.01
127 70 0.38
128 2 0.01
129 100 0.55
131 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (127 bp):
GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATATGGTTTTAATCAGCTCCACTGCAAC
TTCAGGGAGATAGGACTGACTTCTTCTATCTGCTCCACTGCAACTTCAGGGAGATAAGACTG
Found at i:26746405 original size:171 final size:173
Alignment explanation
Indices: 26746192--26746517 Score: 548
Period size: 171 Copynumber: 1.9 Consensus size: 173
26746182 GGATGCGATC
* * *
26746192 TGCTCTACTGCAACTTCAGAGAGATAAGATCTATGATTTTAATCCGCTCTACTGCAACTTTAGGG
1 TGCTCCACTGCAACTTCAGAGAGATAAGATCTATGATTTTAATCCGCTCTACTGCAACTTCAGAG
26746257 AGATAGGACTGGTTTCTTCTGTCTGCTCCACTGCAACTTC-AGG-GATAAGACTGGATGCGATCT
66 AGATAGGACTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTGGATGCGATCT
26746320 GTTCTACTGCAACTTCAGAGAGATAGGATTGGTTTCTGCTGTG
131 GTTCTACTGCAACTTCAGAGAGATAGGATTGGTTTCTGCTGTG
* * *
26746363 TGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGATTTTAATCCGCTCTACTGTAACTTCAGAG
1 TGCTCCACTGCAACTTCAGAGAGATAAGATCTATGATTTTAATCCGCTCTACTGCAACTTCAGAG
* * * *
26746428 AGATAGGATTGGTTTCTTCTGTCTTCTCCACTGTAACTTCAAGGAGATAATACTGGATGCGATCT
66 AGATAGGACTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTGGATGCGATCT
26746493 GTTCTACTGCAACTTCAGAGAGATA
131 GTTCTACTGCAACTTCAGAGAGATA
26746518 AGATCTGTGA
Statistics
Matches: 143, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
171 96 0.67
172 3 0.02
173 44 0.31
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (173 bp):
TGCTCCACTGCAACTTCAGAGAGATAAGATCTATGATTTTAATCCGCTCTACTGCAACTTCAGAG
AGATAGGACTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTGGATGCGATCT
GTTCTACTGCAACTTCAGAGAGATAGGATTGGTTTCTGCTGTG
Found at i:26746597 original size:173 final size:170
Alignment explanation
Indices: 26746148--26746612 Score: 483
Period size: 171 Copynumber: 2.7 Consensus size: 170
26746138 GACTTCTTCT
* * * * * * * * *
26746148 ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTGG-AT-GCGATCTGCTCTACTGCAACTTCAG
1 ATCTGTTCTACTGCAACTTCAGAGAGATAAGATTGGTTTCTCAATCCGCTCCACTGCAACTTCAG
* * * * *
26746211 AGAGATAAGATCTATGATTTTAATCCGCTCTACTGCAACTTTAGGGAGATAGGACTGGTTTCTTC
66 AGAGATAAGATCTGTGATTTTAATCCACTCCACTACAACTTCAGGGAGATAGGACTGGTTTCTTC
26746276 TGTCTGCTCCACTGCAACTTCAGGGATAAGACTGGATGCG
131 TGTCTGCTCCACTGCAACTTCAGGGATAAGACTGGATGCG
* ** **
26746316 ATCTGTTCTACTGCAACTTCAGAGAGATAGGATTGGTTTCTGCTGTGTGCTCCACTGCAACTTCA
1 ATCTGTTCTACTGCAACTTCAGAGAGATAAGATTGGTTTCT-CAATCCGCTCCACTGCAACTTCA
* * * ** * *
26746381 GGGAGATAAGATCTGTGATTTTAATCCGCTCTACTGTAACTTCAGAGAGATAGGATTGGTTTCTT
65 GAGAGATAAGATCTGTGATTTTAATCCACTCCACTACAACTTCAGGGAGATAGGACTGGTTTCTT
* * *
26746446 CTGTCTTCTCCACTGTAACTTCAAGGAGATAATACTGGATGCG
130 CTGTCTGCTCCACTGCAACTTC-AGG-GATAAGACTGGATGCG
* *
26746489 ATCTGTTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTT-T-AATCCGCTCTACTGTAACTT
1 ATCTGTTCTACTGCAACTTCAGAGAGATAAGAT-TG-G-TTTCTCAATCCGCTCCACTGCAACTT
* * ** * *
26746552 CAGAGAGATAGGAT-TG-GTTTCTTCTGTCTACTCCACTACAACTTCAGGGAGATAAGACTGG
63 CAGAGAGATAAGATCTGTGATT-TT-AATCCACTCCACTACAACTTCAGGGAGATAGGACTGG
26746613 GTACGATCTG
Statistics
Matches: 247, Mismatches: 40, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
168 31 0.13
169 1 0.00
171 101 0.41
172 7 0.03
173 100 0.40
174 2 0.01
175 2 0.01
176 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (170 bp):
ATCTGTTCTACTGCAACTTCAGAGAGATAAGATTGGTTTCTCAATCCGCTCCACTGCAACTTCAG
AGAGATAAGATCTGTGATTTTAATCCACTCCACTACAACTTCAGGGAGATAGGACTGGTTTCTTC
TGTCTGCTCCACTGCAACTTCAGGGATAAGACTGGATGCG
Found at i:26746603 original size:129 final size:129
Alignment explanation
Indices: 26746363--26746665 Score: 489
Period size: 129 Copynumber: 2.3 Consensus size: 129
26746353 TTCTGCTGTG
* *
26746363 TGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGATTTTAATCCGCTCTACTGTAACTTCAGAG
1 TGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCTACTGTAACTTCAGAG
* ** * *
26746428 AGATAGGATTGGTTTCTTCTGTCTTCTCCACTGTAACTTCAAGGAGATAATACTGGATGCGATC
66 AGATAGGATTGGTTTCTTCTGTCTACTCCACTACAACTTCAAGGAGATAAGACTGGATACGATC
*
26746492 TGTTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCTACTGTAACTTCAGAG
1 TGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCTACTGTAACTTCAGAG
* *
26746557 AGATAGGATTGGTTTCTTCTGTCTACTCCACTACAACTTCAGGGAGATAAGACTGGGTACGATC
66 AGATAGGATTGGTTTCTTCTGTCTACTCCACTACAACTTCAAGGAGATAAGACTGGATACGATC
* *
26746621 TGCTCTACTGCAACTTCAGAAAGATAAGATCTGCGATTTTCAATC
1 TGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTT-AATC
26746666 TGTTTAACTG
Statistics
Matches: 160, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
129 156 0.98
130 4 0.03
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (129 bp):
TGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCTACTGTAACTTCAGAG
AGATAGGATTGGTTTCTTCTGTCTACTCCACTACAACTTCAAGGAGATAAGACTGGATACGATC
Found at i:26746763 original size:50 final size:49
Alignment explanation
Indices: 26746704--26747859 Score: 443
Period size: 50 Copynumber: 23.2 Consensus size: 49
26746694 ATTCACCACC
* * *
26746704 GTAGTTTCAATCTGTTCTACTGCATCGCCTGAGAAGTAAGATTCGCCGTC
1 GTAGCTTCAATCTGTTCTACTGCAT-GCCTGGGAAGTAAGATTCGCCGTT
* ** * * * * *
26746754 GT-GACTTCAATCTATTGAAATTGCAATGTCGGGGAAGTGAGATTCGCTGTT
1 GTAG-CTTCAATCTGTT-CTACTGC-ATGCCTGGGAAGTAAGATTCGCCGTT
* * ** * *
26746805 GTATCTTCAATTTGTTCCGCTGCAT-CGCTTGGAAGTAAGA-TCTACCGTT
1 GTAGCTTCAATCTGTTCTACTGCATGC-CTGGGAAGTAAGATTC-GCCGTT
* * * ** * * * * *
26746854 GTGGCATCAATCTTTTAAATTGCAATGTCGGGGAAGTGAGATTCGCCGTC
1 GTAGCTTCAATCTGTTCTACTGC-ATGCCTGGGAAGTAAGATTCGCCGTT
* * * * *
26746904 GTAGCTTCAATCTGTTCTGCTGCATCACCTGGGAATTAAGATTCACTGTT
1 GTAGCTTCAATCTGTTCTACTGCAT-GCCTGGGAAGTAAGATTCGCCGTT
* * * *
26746954 GTAGCTTCAATCT-TTTTA--AC-TGCC-GAGGAAGCAAGATTCGCTGTT
1 GTAGCTTCAATCTGTTCTACTGCATGCCTG-GGAAGTAAGATTCGCCGTT
* * * *
26746999 GTAGCTTCAATCTGTTCCACTGCATTG-CTTGGAAGTAAGATTCACCATT
1 GTAGCTTCAATCTGTTCTACTGCA-TGCCTGGGAAGTAAGATTCGCCGTT
* * * ** * *
26747048 GT-GACTTCAATCT-TT-TGAGTTGCAATGTCGGGGAAGCGAGATTCACCGTC
1 GTAG-CTTCAATCTGTTCT-A-CTGC-ATGCCTGGGAAGTAAGATTCGCCGTT
** * *
26747098 GTAGCTTCAATCTGTTCCGCTACATCGCCTGGGAAGTAAGATTCGCCATT
1 GTAGCTTCAATCTGTTCTACTGCAT-GCCTGGGAAGTAAGATTCGCCGTT
* * ** * *
26747148 GT-GACTTCAATCT-TT-TGAGTTGCAATGTC-GAGGAAGCGAGATTCACCGTC
1 GTAG-CTTCAATCTGTTCT-A-CTGC-ATGCCTG-GGAAGTAAGATTCGCCGTT
* * *
26747198 GTAGTTTCAATCTGTTCTGCTGCATCGCCTGGGAAGTAAGATTCGCCATT
1 GTAGCTTCAATCTGTTCTACTGCAT-GCCTGGGAAGTAAGATTCGCCGTT
* * * ** ** *
26747248 GT-GACTTCAATCT-TT-TGAGTTGCAATGTCAGGGAAGCGAGATTTACCGTC
1 GTAG-CTTCAATCTGTTCT-A-CTGC-ATGCCTGGGAAGTAAGATTCGCCGTT
** *
26747298 GTAGCTTCAATCTGTTCCGCTGCATCGCCTGGGAAGTAAGATTCGCCATT
1 GTAGCTTCAATCTGTTCTACTGCAT-GCCTGGGAAGTAAGATTCGCCGTT
* * ** * *
26747348 GT-GACTTCAATCT-TT-TGAGTTGCAATGTC-GAGGAAGCGAGATTCACCGTC
1 GTAG-CTTCAATCTGTTCT-A-CTGC-ATGCCTG-GGAAGTAAGATTCGCCGTT
* * *
26747398 GTAGCTTCAATCTGTTCTGCTGCATCGCCTGGGAAGTAAGATTTGCCATT
1 GTAGCTTCAATCTGTTCTACTGCAT-GCCTGGGAAGTAAGATTCGCCGTT
* * * * * * *
26747448 GTGGCTTCAATCT-TTTTAATTGCAATGTCAGGAAAGTAAGA-TCTGCTGTT
1 GTAGCTTCAATCTGTTCT-ACTGC-ATGCCTGGGAAGTAAGATTC-GCCGTT
* * * * * *
26747498 GTAGCTTCAATCTATTCCACTGCA-ACGCTAGGAATGTAAGATCCGCTGTT
1 GTAGCTTCAATCTGTTCTACTGCATGC-CTGGGAA-GTAAGATTCGCCGTT
* * * * * *
26747548 GTAGCTTCAATC--TTCTTAATTACAATGTCAGGGAAGTAAGATCCGCTGTT
1 GTAGCTTCAATCTGTTC-T-ACTGC-ATGCCTGGGAAGTAAGATTCGCCGTT
* * ** * *
26747598 GTAGCTTCAATCTGTTCCACTGCA-ACGCTAGAAAAGTAAGATCCGCTGTT
1 GTAGCTTCAATCTGTTCTACTGCATGC-CT-GGGAAGTAAGATTCGCCGTT
* * * * * * *
26747648 GTAGCTTCAATCT-TTTTAATTGCAATGTCAGGGAAATAAGATCCGCTGTT
1 GTAGCTTCAATCTGTTCT-ACTGC-ATGCCTGGGAAGTAAGATTCGCCGTT
* * ** * **
26747698 GTAGCTTCAATCTGTTCCACTGCA-ACACTAGAAAAGTAAGATCCGTTGTT
1 GTAGCTTCAATCTGTTCTACTGCATGC-CT-GGGAAGTAAGATTCGCCGTT
* * * * * * *
26747748 GTAGCTTCAATCT-TTTTAATTGCAATGTCAGGAAAGTAAGATCCGCTGTT
1 GTAGCTTCAATCTGTTCT-ACTGC-ATGCCTGGGAAGTAAGATTCGCCGTT
* * * * *
26747798 GTAGCTTCAATCTGTTCCACTGCA-ACGCTAGGAAAGTAAGATCCGCTGTT
1 GTAGCTTCAATCTGTTCTACTGCATGC-CT-GGGAAGTAAGATTCGCCGTT
*
26747848 GTAGCTTTAATC
1 GTAGCTTCAATC
26747860 AAGATTCACC
Statistics
Matches: 809, Mismatches: 216, Indels: 162
0.68 0.18 0.14
Matches are distributed among these distances:
44 1 0.00
45 31 0.04
46 4 0.00
47 1 0.00
48 11 0.01
49 106 0.13
50 573 0.71
51 75 0.09
52 7 0.01
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.33
Consensus pattern (49 bp):
GTAGCTTCAATCTGTTCTACTGCATGCCTGGGAAGTAAGATTCGCCGTT
Found at i:26747159 original size:100 final size:100
Alignment explanation
Indices: 26746703--26747839 Score: 1059
Period size: 100 Copynumber: 11.4 Consensus size: 100
26746693 GATTCACCAC
* ** * * * *
26746703 CGTAGTTTCAATCTGTTCTACTGCATCGCCTGAGAAGTAAGATTCGCCGTCGTGACTTCAATCTA
1 CGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGGAAGTAAGATTCGCCATTGTGACTTCAATCTT
* *
26746768 TTGAAATTGCAATGTCGGGGAAGTGAGATTCGCTGT
66 TTG-AATTGCAATGTCGGGGAAGCGAGATTCGCCGT
* * * * * * * *
26746804 TGTATCTTCAATTTGTTCCGCTGCATCG-CTTGGAAGTAAGA-TCTACCGTTGTGGCATCAATCT
1 CGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGGAAGTAAGATTC-GCCATTGTGACTTCAATCT
* *
26746867 TTTAAATTGCAATGTCGGGGAAGTGAGATTCGCCGT
65 TTTGAATTGCAATGTCGGGGAAGCGAGATTCGCCGT
* * * * **
26746903 CGTAGCTTCAATCTGTTCTGCTGCATCACCTGGGAATTAAGATTCACTGTTGT-AGCTTCAATCT
1 CGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGGAAGTAAGATTCGCCATTGTGA-CTTCAATCT
* * * * *
26746967 TTTTAA---C--TGCCGAGGAAGCAAGATTCGCTGT
65 TTTGAATTGCAATGTCGGGGAAGCGAGATTCGCCGT
* * * * *
26746998 TGTAGCTTCAATCTGTTCCACTGCATTG-CTTGGAAGTAAGATTCACCATTGTGACTTCAATCTT
1 CGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGGAAGTAAGATTCGCCATTGTGACTTCAATCTT
* *
26747062 TTGAGTTGCAATGTCGGGGAAGCGAGATTCACCGT
66 TTGAATTGCAATGTCGGGGAAGCGAGATTCGCCGT
*
26747097 CGTAGCTTCAATCTGTTCCGCTACATCGCCTGGGAAGTAAGATTCGCCATTGTGACTTCAATCTT
1 CGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGGAAGTAAGATTCGCCATTGTGACTTCAATCTT
* * *
26747162 TTGAGTTGCAATGTCGAGGAAGCGAGATTCACCGT
66 TTGAATTGCAATGTCGGGGAAGCGAGATTCGCCGT
* *
26747197 CGTAGTTTCAATCTGTTCTGCTGCATCGCCTGGGAAGTAAGATTCGCCATTGTGACTTCAATCTT
1 CGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGGAAGTAAGATTCGCCATTGTGACTTCAATCTT
* * **
26747262 TTGAGTTGCAATGTCAGGGAAGCGAGATTTACCGT
66 TTGAATTGCAATGTCGGGGAAGCGAGATTCGCCGT
26747297 CGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGGAAGTAAGATTCGCCATTGTGACTTCAATCTT
1 CGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGGAAGTAAGATTCGCCATTGTGACTTCAATCTT
* * *
26747362 TTGAGTTGCAATGTCGAGGAAGCGAGATTCACCGT
66 TTGAATTGCAATGTCGGGGAAGCGAGATTCGCCGT
* * *
26747397 CGTAGCTTCAATCTGTTCTGCTGCATCGCCTGGGAAGTAAGATTTGCCATTGTGGCTTCAATCTT
1 CGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGGAAGTAAGATTCGCCATTGTGACTTCAATCTT
* * * ** *
26747462 TTTAATTGCAATGTCAGGAAAGTAAGA-TCTGCTGT
66 TTGAATTGCAATGTCGGGGAAGCGAGATTC-GCCGT
* * * * * * **
26747497 TGTAGCTTCAATCTATTCCACTGCAACG-CTAGGAATGTAAGATCCGCTGTTGT-AGCTTCAATC
1 CGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGGAA-GTAAGATTCGCCATTGTGA-CTTCAATC
* * ** * *
26747560 TTCTT-AATTACAATGTCAGGGAAGTAAGATCCGCTGT
64 TT-TTGAATTGCAATGTCGGGGAAGCGAGATTCGCCGT
* * * ** * **
26747597 TGTAGCTTCAATCTGTTCCACTGCAACG-CTAGAAAAGTAAGATCCGCTGTTGT-AGCTTCAATC
1 CGTAGCTTCAATCTGTTCCGCTGCATCGCCT-GGGAAGTAAGATTCGCCATTGTGA-CTTCAATC
* * *** * *
26747660 TTTTTAATTGCAATGTCAGGGAAATAAGATCCGCTGT
64 TTTTGAATTGCAATGTCGGGGAAGCGAGATTCGCCGT
* * * * ** * ***
26747697 TGTAGCTTCAATCTGTTCCACTGCAAC-ACTAGAAAAGTAAGATCCGTTGTTGT-AGCTTCAATC
1 CGTAGCTTCAATCTGTTCCGCTGCATCGCCT-GGGAAGTAAGATTCGCCATTGTGA-CTTCAATC
* * * ** * *
26747760 TTTTTAATTGCAATGTCAGGAAAGTAAGATCCGCTGT
64 TTTTGAATTGCAATGTCGGGGAAGCGAGATTCGCCGT
* * * *
26747797 TGTAGCTTCAATCTGTTCCACTGCAACG-CTAGGAAAGTAAGAT
1 CGTAGCTTCAATCTGTTCCGCTGCATCGCCT-GGGAAGTAAGAT
26747840 CCGCTGTTGT
Statistics
Matches: 915, Mismatches: 101, Indels: 41
0.87 0.10 0.04
Matches are distributed among these distances:
94 33 0.04
95 43 0.05
97 2 0.00
99 109 0.12
100 699 0.76
101 29 0.03
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (100 bp):
CGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGGAAGTAAGATTCGCCATTGTGACTTCAATCTT
TTGAATTGCAATGTCGGGGAAGCGAGATTCGCCGT
Found at i:26747964 original size:125 final size:125
Alignment explanation
Indices: 26747801--26748609 Score: 1339
Period size: 125 Copynumber: 6.5 Consensus size: 125
26747791 CGCTGTTGTA
* * * * *** *
26747801 GCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTTAATCAAGATT
1 GCTTTAATCTATTCCACTGCATCGCTTGGGGCGTAAGATTCGCTGTTGTAGCTTTAATCAAGATT
*
26747866 CACCGATGTGGCTTTAATCTTTTTAACTGCAATGTCAGAGAAACAAGATTCACCAATTTG
66 CACCGATGTGGCTTTAATCTTTTTAACTGCAATGTCGGAGAAACAAGATTCACCAATTTG
* * *
26747926 GCTTTAATCTATTTCACTGCATTGCTTGGGGCGTAAGATTTGCTGTTGTAGCTTTAATCAAGATT
1 GCTTTAATCTATTCCACTGCATCGCTTGGGGCGTAAGATTCGCTGTTGTAGCTTTAATCAAGATT
* * *
26747991 TACTGATGTGGCTTTAATCTTTTTAACTGCAATGTCAGAGAAACAAGATTCACCAATTTG
66 CACCGATGTGGCTTTAATCTTTTTAACTGCAATGTCGGAGAAACAAGATTCACCAATTTG
26748051 GCTTTAATCTATTCCACTGCATCGCTTGGGGCGTAAGATTCGCTGTTGTAGCTTTAATCAAGATT
1 GCTTTAATCTATTCCACTGCATCGCTTGGGGCGTAAGATTCGCTGTTGTAGCTTTAATCAAGATT
*
26748116 CACCAATGTGGCTTTAATCTTTTTAACTGCAATGTCGGAGAAACAAGATTCACCAATTTG
66 CACCGATGTGGCTTTAATCTTTTTAACTGCAATGTCGGAGAAACAAGATTCACCAATTTG
* **
26748176 GCTTTAATCTATTTCACTGCATTACTTGGGGCGTAAGATTCGCTGTTGTAGCTTTAATCAAGATT
1 GCTTTAATCTATTCCACTGCATCGCTTGGGGCGTAAGATTCGCTGTTGTAGCTTTAATCAAGATT
* *
26748241 CATCGATGTGGCTTTAATCTTTTTAACTACAATGTCGGAGAAACAAGATTCACCAATTTG
66 CACCGATGTGGCTTTAATCTTTTTAACTGCAATGTCGGAGAAACAAGATTCACCAATTTG
* *
26748301 GCTTTAATCTATTCCACTGCATCGCTTGAGGCGTAAGATTCGCTGTTGTAGATTTAATCAAGATT
1 GCTTTAATCTATTCCACTGCATCGCTTGGGGCGTAAGATTCGCTGTTGTAGCTTTAATCAAGATT
*
26748366 CACCGATGTGGCTTTAATCTTTTTAACTGTAATGTCGGAGAAACAAGATTCACCAATTTG
66 CACCGATGTGGCTTTAATCTTTTTAACTGCAATGTCGGAGAAACAAGATTCACCAATTTG
* * *
26748426 GCTTTAATCTATTCCACTGCATTGATTGGGGCGTAAGATTTGCTGTTGTAGCTTTAATCAAGATT
1 GCTTTAATCTATTCCACTGCATCGCTTGGGGCGTAAGATTCGCTGTTGTAGCTTTAATCAAGATT
*
26748491 CACCGATGTGGCTTTAATCTTTTTAACTGCAATGTCGGAGAAACAAGATTCACCAATTTT
66 CACCGATGTGGCTTTAATCTTTTTAACTGCAATGTCGGAGAAACAAGATTCACCAATTTG
** *
26748551 GCTTTAATCTATTCCACTGCATCGCTTGGGGCGTAAGATTCGCTGAGGTGGCTTTAATC
1 GCTTTAATCTATTCCACTGCATCGCTTGGGGCGTAAGATTCGCTGTTGTAGCTTTAATC
26748610 GTTTGAATTG
Statistics
Matches: 637, Mismatches: 47, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
125 637 1.00
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (125 bp):
GCTTTAATCTATTCCACTGCATCGCTTGGGGCGTAAGATTCGCTGTTGTAGCTTTAATCAAGATT
CACCGATGTGGCTTTAATCTTTTTAACTGCAATGTCGGAGAAACAAGATTCACCAATTTG
Found at i:26748004 original size:25 final size:25
Alignment explanation
Indices: 26747960--26748009 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
26747950 CTTGGGGCGT
* *
26747960 AAGATTTGCTGTTGTAGCTTTAATC
1 AAGATTTACTGATGTAGCTTTAATC
*
26747985 AAGATTTACTGATGTGGCTTTAATC
1 AAGATTTACTGATGTAGCTTTAATC
26748010 TTTTTAACTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.26, C:0.12, G:0.20, T:0.42
Consensus pattern (25 bp):
AAGATTTACTGATGTAGCTTTAATC
Found at i:26749864 original size:43 final size:42
Alignment explanation
Indices: 26749777--26749876 Score: 114
Period size: 43 Copynumber: 2.3 Consensus size: 42
26749767 CCCCGATCTA
* *
26749777 ATCAAAATTTGAGCTGCTCTGATCACCTCATCCCCCAATTTG
1 ATCAAAATTTGAGCTGCTCTGATCACCTAATACCCCAATTTG
* *
26749819 ATCCAAAATTTGAG-TCGCTCTGATCACTTAATATCCC-ATTATG
1 AT-CAAAATTTGAGCT-GCTCTGATCACCTAATACCCCAATT-TG
26749862 ATCAAAAGTTTGAGC
1 ATCAAAA-TTTGAGC
26749877 CGCCCTTTTC
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
42 11 0.22
43 38 0.78
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (42 bp):
ATCAAAATTTGAGCTGCTCTGATCACCTAATACCCCAATTTG
Found at i:26751133 original size:13 final size:13
Alignment explanation
Indices: 26751085--26751130 Score: 51
Period size: 12 Copynumber: 3.6 Consensus size: 13
26751075 CCTTAACCTC
26751085 TCCTTTTTATTTT
1 TCCTTTTTATTTT
26751098 T-CTTTTTATTTT
1 TCCTTTTTATTTT
* *
26751110 TTCTTCTTT-TTTC
1 TCCTT-TTTATTTT
26751123 TCCTTTTT
1 TCCTTTTT
26751131 TTTGATTTCG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
12 15 0.52
13 11 0.38
14 3 0.10
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.78
Consensus pattern (13 bp):
TCCTTTTTATTTT
Found at i:26754902 original size:110 final size:109
Alignment explanation
Indices: 26754651--26754960 Score: 484
Period size: 110 Copynumber: 2.9 Consensus size: 109
26754641 ATATTTGAAA
* * * * *
26754651 ATTTGGTTAAACGAG--ACATCGAAACCCAGCACCTTAGGGCACG-TTCCTCGAATTTCCAAACG
1 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACG
* *
26754713 CAAAACATTGCCTTATTTTGAAATTTTTGAAGGGATATTTAGCT
66 CAAAACATTGCCTTATTTTGAAATTTTTGAAGGGATATTAAGCC
*
26754757 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTCCCAAACG
1 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACG
26754822 CAAAACATTGCCTTATTTTGAAATTTTT-AAGAAGGATATTAAGCC
66 CAAAACATTGCCTTATTTTGAAATTTTTGAAG--GGATATTAAGCC
26754867 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACG
1 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACG
*
26754932 CAAAACATTGCCTTATTTAGAAATATTTT
66 CAAAACATTGCCTTATTTTGAAAT-TTTT
26754961 CCTTTTTTGA
Statistics
Matches: 188, Mismatches: 10, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
106 14 0.07
108 28 0.15
109 45 0.24
110 97 0.52
111 4 0.02
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (109 bp):
ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACG
CAAAACATTGCCTTATTTTGAAATTTTTGAAGGGATATTAAGCC
Found at i:26755453 original size:13 final size:13
Alignment explanation
Indices: 26755435--26755464 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
26755425 ATGAATCATA
26755435 ATATATAAAATAC
1 ATATATAAAATAC
*
26755448 ATATATAAAATAG
1 ATATATAAAATAC
26755461 ATAT
1 ATAT
26755465 TTTAAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.33
Consensus pattern (13 bp):
ATATATAAAATAC
Found at i:26755611 original size:3 final size:3
Alignment explanation
Indices: 26755603--26755668 Score: 114
Period size: 3 Copynumber: 22.0 Consensus size: 3
26755593 ATAAGCAATT
26755603 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
26755651 ATA ATG ACA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA
26755669 TGAAATTTAT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:26758325 original size:16 final size:16
Alignment explanation
Indices: 26758304--26758335 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
26758294 GTAATTATTC
26758304 TTATTATATATGTAAT
1 TTATTATATATGTAAT
26758320 TTATTATATATGTAAT
1 TTATTATATATGTAAT
26758336 GTCCATACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (16 bp):
TTATTATATATGTAAT
Found at i:26758326 original size:19 final size:20
Alignment explanation
Indices: 26758284--26758330 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
26758274 TGATAGTAAA
*
26758284 TATATAATATGTAATTATTCT
1 TATAT-ATATGTAATTATTAT
26758305 TATTATATATGTAA-T-TTAT
1 TA-TATATATGTAATTATTAT
26758324 TATATAT
1 TATATAT
26758331 GTAATGTCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 5 0.21
19 5 0.21
20 1 0.04
21 10 0.42
22 3 0.12
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.55
Consensus pattern (20 bp):
TATATATATGTAATTATTAT
Found at i:26767135 original size:205 final size:205
Alignment explanation
Indices: 26766783--26767184 Score: 786
Period size: 205 Copynumber: 2.0 Consensus size: 205
26766773 TCCATGATGA
*
26766783 AGACAAAAGAAGAAAATCCAAGTGCAGACAAATAAGTCTTGCAACGTGGAAGCTATCATCAAACC
1 AGACAAAAGAAGAAAATCCAAGTGCAGACAAACAAGTCTTGCAACGTGGAAGCTATCATCAAACC
*
26766848 AATGATGATGTAAGCAATGATGGAAGCTACCATCACACAAGCAAGTGATGGAAGCAGCCATTAAT
66 AATGATGATGTAAGCAATGATGGAAGCTACCATCACACAAGCAAGTGATGGAAGCAGCCACTAAT
26766913 TGAAGCATGCAACGTGGAAACAACCAGGTCCATGCAATTAAAAATACAAGAAGACAAATGAGACG
131 TGAAGCATGCAACGTGGAAACAACCAGGTCCATGCAATTAAAAATACAAGAAGACAAATGAGACG
26766978 TGCCAAGTGC
196 TGCCAAGTGC
26766988 AGACAAAAGAAGAAAATCCAAGTGCAGACAAACAAGTCTTGCAACGTGGAAGCTATCATCAAACC
1 AGACAAAAGAAGAAAATCCAAGTGCAGACAAACAAGTCTTGCAACGTGGAAGCTATCATCAAACC
26767053 AATGATGATGTAAGCAATGATGGAAGCTACCATCACACAAGCAAGTGATGGAAGCAGCCACTAAT
66 AATGATGATGTAAGCAATGATGGAAGCTACCATCACACAAGCAAGTGATGGAAGCAGCCACTAAT
26767118 TGAAGCATGCAACGTGGAAACAACCAGGTCCATGCAATTAAAAATACAAGAAGACAAATGAGACG
131 TGAAGCATGCAACGTGGAAACAACCAGGTCCATGCAATTAAAAATACAAGAAGACAAATGAGACG
26767183 TG
196 TG
26767185 GAAGCAGCCA
Statistics
Matches: 195, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
205 195 1.00
ACGTcount: A:0.43, C:0.19, G:0.21, T:0.16
Consensus pattern (205 bp):
AGACAAAAGAAGAAAATCCAAGTGCAGACAAACAAGTCTTGCAACGTGGAAGCTATCATCAAACC
AATGATGATGTAAGCAATGATGGAAGCTACCATCACACAAGCAAGTGATGGAAGCAGCCACTAAT
TGAAGCATGCAACGTGGAAACAACCAGGTCCATGCAATTAAAAATACAAGAAGACAAATGAGACG
TGCCAAGTGC
Found at i:26773649 original size:18 final size:18
Alignment explanation
Indices: 26773612--26773650 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
26773602 ATATATATAA
* * *
26773612 ATGTGTATGTGCATATTT
1 ATGTGTACGTGCAAAGTT
26773630 ATGTGTACGTGCAAAGTT
1 ATGTGTACGTGCAAAGTT
26773648 ATG
1 ATG
26773651 AAATATATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.08, G:0.26, T:0.41
Consensus pattern (18 bp):
ATGTGTACGTGCAAAGTT
Found at i:26773665 original size:9 final size:9
Alignment explanation
Indices: 26773651--26773675 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
26773641 CAAAGTTATG
26773651 AAATATATA
1 AAATATATA
26773660 AAATATATA
1 AAATATATA
26773669 AAATATA
1 AAATATA
26773676 AAGGTAGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (9 bp):
AAATATATA
Found at i:26782925 original size:16 final size:16
Alignment explanation
Indices: 26782904--26782938 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
26782894 TCTCATTTCT
26782904 TTTATATATATTTATA
1 TTTATATATATTTATA
* *
26782920 TTTATATTTATTTTTA
1 TTTATATATATTTATA
26782936 TTT
1 TTT
26782939 TTTTAAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTATATATATTTATA
Found at i:26786167 original size:25 final size:25
Alignment explanation
Indices: 26786136--26786244 Score: 91
Period size: 25 Copynumber: 4.4 Consensus size: 25
26786126 GCTCTTTCTT
*
26786136 GAGCCATATAATAGGAAGCTCATGT
1 GAGCCATATAATAGGAAGCTCATGC
* * * *
26786161 GAGCCATGTAACAGGAAGCTTATCC
1 GAGCCATATAATAGGAAGCTCATGC
* * *
26786186 GGGCTATATAA-CGAGAAGCTCATGC
1 GAGCCATATAATAG-GAAGCTCATGC
*
26786211 GAGCC--ATAATCGGGAAGCTCATGC
1 GAGCCATATAAT-AGGAAGCTCATGC
26786235 GAGCCA-ATAA
1 GAGCCATATAA
26786245 CGGGTAGCTC
Statistics
Matches: 66, Mismatches: 14, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
23 4 0.06
24 17 0.26
25 45 0.68
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.19
Consensus pattern (25 bp):
GAGCCATATAATAGGAAGCTCATGC
Found at i:26786229 original size:24 final size:24
Alignment explanation
Indices: 26786149--26786350 Score: 104
Period size: 24 Copynumber: 8.3 Consensus size: 24
26786139 CCATATAATA
* * *
26786149 GGAAGCTCATGTGAGCCATGTAACA
1 GGAAGCTCATGCGAGCCA-ATAACG
* * * *
26786174 GGAAGCTTATCCGGGCTATATAACG
1 GGAAGCTCATGCGAGCCA-ATAACG
*
26786199 AGAAGCTCATGCGAGCC-ATAATCG
1 GGAAGCTCATGCGAGCCAATAA-CG
26786223 GGAAGCTCATGCGAGCCAATAACG
1 GGAAGCTCATGCGAGCCAATAACG
* * * *
26786247 GGTAGCTC-CGAAGAGCCATTAACG
1 GGAAGCTCATG-CGAGCCAATAACG
** * *
26786271 GGAAGCTCCA-GATAACCATATATCG
1 GGAAGCT-CATGCGAGCCA-ATAACG
** * * *
26786296 AAAAGTTCAAGCGAGCCAATATCG
1 GGAAGCTCATGCGAGCCAATAACG
* * * *
26786320 GGAAGCTTAGGAGAGCCATTAACG
1 GGAAGCTCATGCGAGCCAATAACG
26786344 GGAAGCT
1 GGAAGCT
26786351 TACAAAGAGC
Statistics
Matches: 134, Mismatches: 36, Indels: 15
0.72 0.19 0.08
Matches are distributed among these distances:
23 5 0.04
24 80 0.60
25 49 0.37
ACGTcount: A:0.33, C:0.22, G:0.27, T:0.18
Consensus pattern (24 bp):
GGAAGCTCATGCGAGCCAATAACG
Found at i:26786292 original size:97 final size:99
Alignment explanation
Indices: 26786191--26786393 Score: 232
Period size: 97 Copynumber: 2.1 Consensus size: 99
26786181 TATCCGGGCT
* * * * *
26786191 ATATAACGAGAAGCTCATGCGAGCC-ATAATCGGGAAGCTCATGCGAGCCAATAACGGGTAGC-T
1 ATATAACGAAAAGCTCAAGCGAGCCAAT-ATCGGGAAGCTCAGGAGAGCCAATAACGGGAAGCTT
* * * *
26786254 CCGAAGAGCCATTAA-CGGGAAGCTCCAGATAACC
65 ACAAAGAGCCATTAATCGGGAAGCTCCAAAGAACC
* * * *
26786288 ATATATCGAAAAGTTCAAGCGAGCCAATATCGGGAAGCTTAGGAGAGCCATTAACGGGAAGCTTA
1 ATATAACGAAAAGCTCAAGCGAGCCAATATCGGGAAGCTCAGGAGAGCCAATAACGGGAAGCTTA
* * *
26786353 CAAAGAGCCTTTAATTGGGAAGCTCCAAAGAGCC
66 CAAAGAGCCATTAATCGGGAAGCTCCAAAGAACC
26786387 ATATAAC
1 ATATAAC
26786394 AGGACGCTTA
Statistics
Matches: 86, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
97 50 0.58
98 15 0.17
99 21 0.24
ACGTcount: A:0.36, C:0.22, G:0.25, T:0.18
Consensus pattern (99 bp):
ATATAACGAAAAGCTCAAGCGAGCCAATATCGGGAAGCTCAGGAGAGCCAATAACGGGAAGCTTA
CAAAGAGCCATTAATCGGGAAGCTCCAAAGAACC
Found at i:26786366 original size:25 final size:26
Alignment explanation
Indices: 26786308--26786388 Score: 80
Period size: 25 Copynumber: 3.3 Consensus size: 26
26786298 AAGTTCAAGC
* **
26786308 GAGCCAAT-ATCGGGAAGCTTA-GGA
1 GAGCCATTAATCGGGAAGCTTACAAA
26786332 GAGCCATTAA-CGGGAAGCTTACAAA
1 GAGCCATTAATCGGGAAGCTTACAAA
* * *
26786357 GAGCCTTTAATTGGGAAGC-TCCAAA
1 GAGCCATTAATCGGGAAGCTTACAAA
26786382 GAGCCAT
1 GAGCCAT
26786389 ATAACAGGAC
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
24 18 0.38
25 22 0.47
26 7 0.15
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.19
Consensus pattern (26 bp):
GAGCCATTAATCGGGAAGCTTACAAA
Found at i:26787050 original size:21 final size:21
Alignment explanation
Indices: 26787026--26787065 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
26787016 TTTGCAGCCC
26787026 ATTTAATTCATAAAATTTAGA
1 ATTTAATTCATAAAATTTAGA
** *
26787047 ATTTTTTTCATAAATTTTA
1 ATTTAATTCATAAAATTTA
26787066 CATCTTTACA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.05, G:0.03, T:0.53
Consensus pattern (21 bp):
ATTTAATTCATAAAATTTAGA
Found at i:26792076 original size:19 final size:18
Alignment explanation
Indices: 26792054--26792095 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
26792044 TATAAATTCA
26792054 AAATAAAATTAAATAATC
1 AAATAAAATTAAATAATC
* *
26792072 GAAATTAAATTACATAATC
1 -AAATAAAATTAAATAATC
26792091 AAATA
1 AAATA
26792096 TGCGAATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.62, C:0.07, G:0.02, T:0.29
Consensus pattern (18 bp):
AAATAAAATTAAATAATC
Found at i:26793264 original size:46 final size:46
Alignment explanation
Indices: 26793197--26793288 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
26793187 TCATGCCAAG
26793197 ACCATTAAGGATAACTACCATTTTAAAACATATTTTAAAATTTTAA
1 ACCATTAAGGATAACTACCATTTTAAAACATATTTTAAAATTTTAA
26793243 ACCATTAAGGATAACTACCATTTTAAAACATATTTTAAAATTTTAA
1 ACCATTAAGGATAACTACCATTTTAAAACATATTTTAAAATTTTAA
26793289 GACTAACTTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.46, C:0.13, G:0.04, T:0.37
Consensus pattern (46 bp):
ACCATTAAGGATAACTACCATTTTAAAACATATTTTAAAATTTTAA
Found at i:26793265 original size:26 final size:26
Alignment explanation
Indices: 26793197--26793269 Score: 68
Period size: 26 Copynumber: 3.0 Consensus size: 26
26793187 TCATGCCAAG
26793197 ACCATTAAGGATAACTACCATTTTAA
1 ACCATTAAGGATAACTACCATTTTAA
* ***
26793223 AACA-T-ATTTTAA--A--ATTTTAA
1 ACCATTAAGGATAACTACCATTTTAA
26793243 ACCATTAAGGATAACTACCATTTTAA
1 ACCATTAAGGATAACTACCATTTTAA
26793269 A
1 A
26793270 ACATATTTTA
Statistics
Matches: 33, Mismatches: 8, Indels: 12
0.62 0.15 0.23
Matches are distributed among these distances:
20 10 0.30
21 1 0.03
22 5 0.15
24 5 0.15
25 1 0.03
26 11 0.33
ACGTcount: A:0.45, C:0.15, G:0.05, T:0.34
Consensus pattern (26 bp):
ACCATTAAGGATAACTACCATTTTAA
Found at i:26795717 original size:17 final size:19
Alignment explanation
Indices: 26795674--26795714 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
26795664 AATAGACATA
*
26795674 TATTTCTTTTTAAAATATT
1 TATTTATTTTTAAAATATT
*
26795693 TATTTATTTTTAATAT-TT
1 TATTTATTTTTAAAATATT
26795711 TATT
1 TATT
26795715 ATTCCCTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.68
Consensus pattern (19 bp):
TATTTATTTTTAAAATATT
Found at i:26796765 original size:19 final size:20
Alignment explanation
Indices: 26796722--26796768 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
26796712 AAATTACAAA
*
26796722 AAAAAATTCAAAATAATTTT
1 AAAAAATTCAAAATAATTAT
26796742 AAAAAATTCAAAAT-ATTCAT
1 AAAAAATTCAAAATAATT-AT
26796762 AAAAAAT
1 AAAAAAT
26796769 CTAAAATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 3 0.12
20 22 0.88
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (20 bp):
AAAAAATTCAAAATAATTAT
Found at i:26801066 original size:16 final size:16
Alignment explanation
Indices: 26801045--26801097 Score: 79
Period size: 16 Copynumber: 3.3 Consensus size: 16
26801035 TTGGTTCACT
26801045 GTAATGGAATAGAGGC
1 GTAATGGAATAGAGGC
*
26801061 GTAATGGAATAGATGC
1 GTAATGGAATAGAGGC
* *
26801077 GTAATGAAATGGAGGC
1 GTAATGGAATAGAGGC
26801093 GTAAT
1 GTAAT
26801098 AGGTAATTCT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.38, C:0.06, G:0.34, T:0.23
Consensus pattern (16 bp):
GTAATGGAATAGAGGC
Found at i:26801163 original size:44 final size:46
Alignment explanation
Indices: 26801077--26801167 Score: 141
Period size: 44 Copynumber: 2.0 Consensus size: 46
26801067 GAATAGATGC
* *
26801077 GTAATGAAATGGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAAT
1 GTAATGAAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAAT
*
26801123 GTAATGGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTGGTTGAAT
1 GTAATGAAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAAT
26801167 G
1 G
26801168 GAATAGAGGT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
44 20 0.48
45 3 0.07
46 19 0.45
ACGTcount: A:0.26, C:0.04, G:0.31, T:0.38
Consensus pattern (46 bp):
GTAATGAAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAAT
Found at i:26801168 original size:39 final size:44
Alignment explanation
Indices: 26801077--26801183 Score: 125
Period size: 46 Copynumber: 2.5 Consensus size: 44
26801067 GAATAGATGC
* * *
26801077 GTAATGAAATGGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTT--AT
26801123 GTAATGGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTGG-T-T
1 GTAATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTAT
*
26801163 G-AATGGAATAGAGGTGTAATA
1 GTAATGGAATAGAGGCGTAATA
26801184 ACATAAGGAA
Statistics
Matches: 56, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
39 18 0.32
40 2 0.04
43 1 0.02
44 13 0.23
45 3 0.05
46 19 0.34
ACGTcount: A:0.29, C:0.04, G:0.31, T:0.36
Consensus pattern (44 bp):
GTAATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTAT
Found at i:26801336 original size:16 final size:15
Alignment explanation
Indices: 26801326--26801481 Score: 61
Period size: 17 Copynumber: 10.5 Consensus size: 15
26801316 CATAATTGTT
26801326 ATAAAATATAATTTA
1 ATAAAATATAATTTA
26801341 ATAAAATATATAATTTA
1 AT-AAA-ATATAATTTA
26801358 ATAAAAT-T--TTTA
1 ATAAAATATAATTTA
26801370 AT-AAATAT--TCTT-
1 ATAAAATATAAT-TTA
* * *
26801382 ATATGAAT-TTA-CTA
1 ATA-AAATATAATTTA
26801396 ATAAAATCATAATATATGA
1 ATAAAAT-ATAAT-T-T-A
26801415 TACTAAAATATAATTTA
1 -A-TAAAATATAATTTA
26801432 A-AATAAT-T-A-TT-
1 ATAA-AATATAATTTA
*
26801443 ATTAAATATAATTTA
1 ATAAAATATAATTTA
26801458 ATAAAATATATAATTTA
1 AT-AAA-ATATAATTTA
26801475 ATAAAAT
1 ATAAAAT
26801482 TGTTAATAAA
Statistics
Matches: 109, Mismatches: 7, Indels: 50
0.66 0.04 0.30
Matches are distributed among these distances:
11 8 0.07
12 14 0.13
13 9 0.08
14 12 0.11
15 13 0.12
16 12 0.11
17 25 0.23
18 2 0.02
19 2 0.02
20 6 0.06
21 6 0.06
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (15 bp):
ATAAAATATAATTTA
Found at i:26801371 original size:17 final size:17
Alignment explanation
Indices: 26801331--26801364 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
26801321 TTGTTATAAA
26801331 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
26801348 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
26801365 TTTTAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:26801488 original size:17 final size:17
Alignment explanation
Indices: 26801448--26801481 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
26801438 TTATTATTAA
26801448 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
26801465 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
26801482 TGTTAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:26801517 original size:117 final size:117
Alignment explanation
Indices: 26801311--26801715 Score: 729
Period size: 117 Copynumber: 3.5 Consensus size: 117
26801301 TTAATCATAT
* * *
26801311 TTTAACATAATTGTTATAAAATATAATTTAATAAAATATATAATTTAATAAAATTTTTAATAAAT
1 TTTAAAATAATTATTATAAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
*
26801376 ATTCTTATATGAATTTACTAATAAAATCATAATATATGATACTAAAATATAA
66 ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA
*
26801428 TTTAAAATAATTATTATTAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
1 TTTAAAATAATTATTATAAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
26801493 ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA
66 ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA
* *
26801545 TTTAACATAATTGTTATAAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
1 TTTAAAATAATTATTATAAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
26801610 ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA
66 ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA
* *
26801662 TTTAAAATAATTATTATTAAATATAATTTAATAAAATATATAATTTACTAAAAT
1 TTTAAAATAATTATTATAAAATATAATTTAATAAAATATATAATTTAATAAAAT
26801716 CATAATATAT
Statistics
Matches: 276, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
117 276 1.00
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (117 bp):
TTTAAAATAATTATTATAAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTAAAATATAA
Found at i:26801580 original size:15 final size:15
Alignment explanation
Indices: 26801560--26801598 Score: 60
Period size: 17 Copynumber: 2.5 Consensus size: 15
26801550 CATAATTGTT
26801560 ATAAAATATAATTTA
1 ATAAAATATAATTTA
26801575 ATAAAATATATAATTTA
1 AT-AAA-ATATAATTTA
26801592 ATAAAAT
1 ATAAAAT
26801599 TGTTAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 4 0.18
16 6 0.27
17 12 0.55
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
ATAAAATATAATTTA
Found at i:26801605 original size:17 final size:17
Alignment explanation
Indices: 26801565--26801598 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
26801555 TTGTTATAAA
26801565 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
26801582 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
26801599 TGTTAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:26801670 original size:20 final size:21
Alignment explanation
Indices: 26801631--26801670 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
26801621 AATTTACTAA
*
26801631 TAAAATCATAATATATAATAC
1 TAAAATCATAATATAAAATAC
*
26801652 TAAAAT-ATAATTTAAAATA
1 TAAAATCATAATATAAAATA
26801671 ATTATTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (21 bp):
TAAAATCATAATATAAAATAC
Found at i:26801704 original size:17 final size:17
Alignment explanation
Indices: 26801682--26801715 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26801672 TTATTATTAA
26801682 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
*
26801699 ATATAATTTACTAAAAT
1 ATATAATTTAATAAAAT
26801716 CATAATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:26801736 original size:23 final size:22
Alignment explanation
Indices: 26801691--26801780 Score: 67
Period size: 23 Copynumber: 3.9 Consensus size: 22
26801681 AATATAATTT
* *
26801691 AATAAAATATATAATTTACTAA
1 AATATAATATATAATCTACTAA
26801713 AATCATAATATATAATACTA-TAA
1 AAT-ATAATATATAAT-CTACTAA
* *
26801736 AATATAATTTAAATAAT-TATTATTA
1 AATATAA--TATATAATCTACTA--A
*
26801761 AATATAATTTATAATCTACT
1 AATATAATATATAATCTACT
26801781 TTATTATTAT
Statistics
Matches: 54, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
22 9 0.17
23 25 0.46
24 12 0.22
25 8 0.15
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (22 bp):
AATATAATATATAATCTACTAA
Found at i:26801767 original size:32 final size:32
Alignment explanation
Indices: 26801731--26801794 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 32
26801721 TATATAATAC
*
26801731 TATAAAATATAATTTAAATAATTATTATTAAA
1 TATAAAATATAATCTAAATAATTATTATTAAA
** ** *
26801763 TATAATTTATAATCTACTTTATTATTATTAAA
1 TATAAAATATAATCTAAATAATTATTATTAAA
26801795 CTGCAATACA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (32 bp):
TATAAAATATAATCTAAATAATTATTATTAAA
Found at i:26804238 original size:29 final size:29
Alignment explanation
Indices: 26804146--26804262 Score: 127
Period size: 29 Copynumber: 4.1 Consensus size: 29
26804136 AATATTTTTA
26804146 GATTATTTTGATGTATTTCAATCATTATC
1 GATTATTTTGATGTATTTCAATCATTATC
* ** * *
26804175 GA-T-TTAT-ATAAATTTTAAT-ATT-TT
1 GATTATTTTGATGTATTTCAATCATTATC
*
26804199 AATTTCATTTTGATGTATTTCAATCATTATC
1 GA-TT-ATTTTGATGTATTTCAATCATTATC
26804230 GATTATTTTGATGTATTTCAATCATTATC
1 GATTATTTTGATGTATTTCAATCATTATC
26804259 GATT
1 GATT
26804263 TATATAGTCC
Statistics
Matches: 69, Mismatches: 12, Indels: 14
0.73 0.13 0.15
Matches are distributed among these distances:
24 2 0.03
25 3 0.04
26 10 0.14
27 3 0.04
28 4 0.06
29 40 0.58
30 5 0.07
31 2 0.03
ACGTcount: A:0.30, C:0.09, G:0.09, T:0.53
Consensus pattern (29 bp):
GATTATTTTGATGTATTTCAATCATTATC
Found at i:26804529 original size:2 final size:2
Alignment explanation
Indices: 26804522--26804552 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
26804512 ATTTGTACAG
26804522 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
26804553 TATCCGTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:26808158 original size:126 final size:126
Alignment explanation
Indices: 26807933--26808184 Score: 486
Period size: 126 Copynumber: 2.0 Consensus size: 126
26807923 GCAGTACATT
26807933 TAGCAATTTCAGTTTAACAGTATAATTAAATCCTACCCCACCGCTACACTCCATAGTAAGAATTC
1 TAGCAATTTCAGTTTAACAGTATAATTAAATCCTACCCCACCGCTACACTCCATAGTAAGAATTC
* *
26807998 CCTATAATTCTTATATCCCGAACACTCCAGTTTGTGGATAAACCACCAGTGTTACAAGTTA
66 CCTATAATTCTTATATCCCAAACACTCCAGTTTGTGGATAAACCACCAGCGTTACAAGTTA
26808059 TAGCAATTTCAGTTTAACAGTATAATTAAATCCTACCCCACCGCTACACTCCATAGTAAGAATTC
1 TAGCAATTTCAGTTTAACAGTATAATTAAATCCTACCCCACCGCTACACTCCATAGTAAGAATTC
26808124 CCTATAATTCTTATATCCCAAACACTCCAGTTTGTGGATAAACCACCAGCGTTACAAGTTA
66 CCTATAATTCTTATATCCCAAACACTCCAGTTTGTGGATAAACCACCAGCGTTACAAGTTA
26808185 GTAAGCTGTC
Statistics
Matches: 124, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
126 124 1.00
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.30
Consensus pattern (126 bp):
TAGCAATTTCAGTTTAACAGTATAATTAAATCCTACCCCACCGCTACACTCCATAGTAAGAATTC
CCTATAATTCTTATATCCCAAACACTCCAGTTTGTGGATAAACCACCAGCGTTACAAGTTA
Found at i:26810300 original size:47 final size:48
Alignment explanation
Indices: 26810177--26810301 Score: 137
Period size: 47 Copynumber: 2.6 Consensus size: 48
26810167 ATTGATGAAA
* * * * *
26810177 AAGACCATGGTTGGACCATGGCAAT-ATGTGATATGTGGTTTCCGTAT
1 AAGACCATGGTTGGGCTATGGCATTGGTGTGATATGTGGCTTCCGTAT
* * * * *
26810224 AAGACCATAGCTAGGCTATGGCATCGGTGTGATATGT-GCTTCCGTGT
1 AAGACCATGGTTGGGCTATGGCATTGGTGTGATATGTGGCTTCCGTAT
*
26810271 AAGACCATGGTTGGGCTATGGCTTTGGTGTG
1 AAGACCATGGTTGGGCTATGGCATTGGTGTG
26810302 TGATATGCGA
Statistics
Matches: 62, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
47 52 0.84
48 10 0.16
ACGTcount: A:0.22, C:0.16, G:0.31, T:0.31
Consensus pattern (48 bp):
AAGACCATGGTTGGGCTATGGCATTGGTGTGATATGTGGCTTCCGTAT
Found at i:26810908 original size:25 final size:25
Alignment explanation
Indices: 26810852--26810953 Score: 90
Period size: 22 Copynumber: 4.3 Consensus size: 25
26810842 GAACCTTAGC
26810852 GTGCTCTCTGATTATTAGCACATCA
1 GTGCTCTCTGATTATTAGCACATCA
* ** *
26810877 GTACTCTCTGATTATTAGCATGTTA
1 GTGCTCTCTGATTATTAGCACATCA
* *
26810902 GTGCTCTCCG---ATTAGCACATCT
1 GTGCTCTCTGATTATTAGCACATCA
* *
26810924 GTGCTCTCTG--TA-TAGCACTTTA
1 GTGCTCTCTGATTATTAGCACATCA
26810946 GTGCTCTC
1 GTGCTCTC
26810954 AGTTCATTAG
Statistics
Matches: 62, Mismatches: 14, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
22 32 0.52
23 1 0.02
25 29 0.47
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.38
Consensus pattern (25 bp):
GTGCTCTCTGATTATTAGCACATCA
Found at i:26810963 original size:47 final size:48
Alignment explanation
Indices: 26810852--26810963 Score: 117
Period size: 47 Copynumber: 2.4 Consensus size: 48
26810842 GAACCTTAGC
*
26810852 GTGCTCTCTGATTATTAGCACATCAGTACTCTCTGATTATTAGCATGTTA
1 GTGCTCTCAG-TTATTAGCACATCAGTACTCTCTGA-TATTAGCATGTTA
* * *
26810902 GTGCTCTCCG--ATTAGCACATCTGTGCTCTCTG-TA-TAGCACT-TTA
1 GTGCTCTCAGTTATTAGCACATCAGTACTCTCTGATATTAGCA-TGTTA
26810946 GTGCTCTCAGTTCATTAG
1 GTGCTCTCAGTT-ATTAG
26810964 TGCATAATAA
Statistics
Matches: 54, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
44 17 0.31
45 3 0.06
47 25 0.46
50 9 0.17
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (48 bp):
GTGCTCTCAGTTATTAGCACATCAGTACTCTCTGATATTAGCATGTTA
Found at i:26811944 original size:28 final size:28
Alignment explanation
Indices: 26811894--26811950 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
26811884 TTTAGTATTT
*
26811894 TATTTTTTATAATTTTTTAA-TTTTAAA
1 TATTTTTTATAATTTTATAATTTTTAAA
*
26811921 TATTTTTGTATAATTTTATGATTTTTAAA
1 TATTTTT-TATAATTTTATAATTTTTAAA
26811950 T
1 T
26811951 GAAATACCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 7 0.27
28 11 0.42
29 8 0.31
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.65
Consensus pattern (28 bp):
TATTTTTTATAATTTTATAATTTTTAAA
Found at i:26815510 original size:23 final size:24
Alignment explanation
Indices: 26815474--26815519 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
26815464 TTATCCAATG
26815474 TTATTTATAAATTTT-TGTATTAAT
1 TTATTTATAAATTTTAT-TATTAAT
*
26815498 TTATTT-TATATTTTATTATTAA
1 TTATTTATAAATTTTATTATTAA
26815520 ATATAATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (24 bp):
TTATTTATAAATTTTATTATTAAT
Found at i:26826781 original size:20 final size:21
Alignment explanation
Indices: 26826728--26826792 Score: 71
Period size: 20 Copynumber: 3.1 Consensus size: 21
26826718 ATATTTTAAC
*
26826728 TTTTATTTAATTTTTATAATAA
1 TTTTTTTTAATTTTTA-AATAA
* **
26826750 TTATTAATAA-TTTTAAATAA
1 TTTTTTTTAATTTTTAAATAA
26826770 TTTTTTTTAATTTTTAAA-AA
1 TTTTTTTTAATTTTTAAATAA
26826790 TTT
1 TTT
26826793 AATTAATTGT
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
20 17 0.49
21 12 0.34
22 6 0.17
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTTTTTTAATTTTTAAATAA
Found at i:26829619 original size:47 final size:47
Alignment explanation
Indices: 26829566--26829710 Score: 158
Period size: 47 Copynumber: 3.1 Consensus size: 47
26829556 TCATATAATA
*
26829566 ATATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATT
1 ATATTTATTATTAAGAATTTTATGAAATTATATATAATTATTAAATT
* **
26829613 ATATTTAATATTAATTA-TTT-T-AAATTATATA-AATTCATATAAGA--
1 ATATTTATTATTAAGAATTTTATGAAATTATATATAATT-AT-TAA-ATT
* * *
26829657 ATATTTATTATCAAGAATTTTATGAAGTTATATATTATTATTAAATT
1 ATATTTATTATTAAGAATTTTATGAAATTATATATAATTATTAAATT
26829704 ATATTTA
1 ATATTTA
26829711 ATAATAATTA
Statistics
Matches: 79, Mismatches: 10, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
43 3 0.04
44 25 0.32
45 8 0.10
46 8 0.10
47 32 0.41
48 3 0.04
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.50
Consensus pattern (47 bp):
ATATTTATTATTAAGAATTTTATGAAATTATATATAATTATTAAATT
Found at i:26829660 original size:91 final size:91
Alignment explanation
Indices: 26829551--26829766 Score: 342
Period size: 91 Copynumber: 2.4 Consensus size: 91
26829541 ATGATTTTAG
*
26829551 TAAATTCATATAATAATATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATA
1 TAAATTCATATAAGAATATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATA
* *
26829616 TTTAATATTAATTATTTTAAATTATA
66 TTTAATAATAATTATATTAAATTATA
* * *
26829642 TAAATTCATATAAGAATATTTATTATCAAGAATTTTATGAAGTTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAATATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATA
26829707 TTTAATAATAATTATATTAAATTATA
66 TTTAATAATAATTATATTAAATTATA
* * * *
26829733 CAAATTCATATAAGAAAATTTATTAGTAATAATT
1 TAAATTCATATAAGAATATTTATTATTAAGAATT
26829767 ATTTTAAATT
Statistics
Matches: 114, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
91 114 1.00
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAATATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TTTAATAATAATTATATTAAATTATA
Found at i:26829744 original size:101 final size:97
Alignment explanation
Indices: 26829634--26829833 Score: 210
Period size: 101 Copynumber: 2.0 Consensus size: 97
26829624 TAATTATTTT
* * *
26829634 AAATTATAT-AAATTCATATAAG-AATATTTATTATCAAGAATTTTATGAAGTTATATATTATT-
1 AAATTATATAAAATT--TATAAGTAATAATTATT-T-AA-AATTTTATGAAATCATATATT-TTA
*
26829696 ATTAAATTATATTTAATAATAATTATATT-AAATTATAC
60 ATTAAAATATATTTAATAATAATTAT-TTCAAATTATAC
* * *
26829734 AAATTCATATAAGAAAATTTATTAGTAATAATTATTTTAAATTTTATTAAATCATATATTTTAAT
1 AAATT-ATAT---AAAATTTATAAGTAATAATTATTTAAAATTTTATGAAATCATATATTTTAAT
26829799 TAAAATATATTTAATAATAATTATTTCAAATTATA
62 TAAAATATATTTAATAATAATTATTTCAAATTATA
26829834 TTTTATAGTA
Statistics
Matches: 85, Mismatches: 7, Indels: 15
0.79 0.07 0.14
Matches are distributed among these distances:
100 9 0.11
101 55 0.65
102 1 0.01
103 6 0.07
104 9 0.11
105 5 0.06
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (97 bp):
AAATTATATAAAATTTATAAGTAATAATTATTTAAAATTTTATGAAATCATATATTTTAATTAAA
ATATATTTAATAATAATTATTTCAAATTATAC
Found at i:26829768 original size:47 final size:45
Alignment explanation
Indices: 26829624--26829776 Score: 125
Period size: 47 Copynumber: 3.3 Consensus size: 45
26829614 TATTTAATAT
* *
26829624 TAATTATTTTAAATTATATAAATTCATATAAGAATATTTATTATCAA
1 TAATTATATTAAATTATA-AAATTCATATAAGAAAATTTATTAT-AA
* * * * * **
26829671 GAATTTTATGAAGTTAT-ATATT-AT-T-ATTAAATTATATTTAATAA
1 TAATTATATTAAATTATAAAATTCATATAAGAAAATT-TA-TT-ATAA
26829715 TAATTATATTAAATTATACAAATTCATATAAGAAAATTTATTAGTAA
1 TAATTATATTAAATTATA-AAATTCATATAAGAAAATTTATTA-TAA
*
26829762 TAATTATTTTAAATT
1 TAATTATATTAAATT
26829777 TTATTAAATC
Statistics
Matches: 80, Mismatches: 17, Indels: 18
0.70 0.15 0.16
Matches are distributed among these distances:
42 5 0.06
43 3 0.04
44 19 0.24
45 6 0.08
46 5 0.06
47 33 0.41
48 3 0.04
49 6 0.08
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (45 bp):
TAATTATATTAAATTATAAAATTCATATAAGAAAATTTATTATAA
Found at i:26830073 original size:120 final size:120
Alignment explanation
Indices: 26829773--26830183 Score: 770
Period size: 120 Copynumber: 3.4 Consensus size: 120
26829763 AATTATTTTA
26829773 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTT
26829838 ATAGTATCATATATTATGATTTTAAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTT-AGTAAATTCATATAAGAATATTGATTATTAAG
26829894 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTT
26829959 ATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
26830014 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTAT-TTCAAATTATATTT
*
26830078 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
65 TATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
* *
26830134 AATTTTATTAAATTATATAATTTAATTAAAATATATTTAATAATAATTAT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTAT
26830184 GTTAAAATAT
Statistics
Matches: 286, Mismatches: 3, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
120 196 0.69
121 90 0.31
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (120 bp):
AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTT
ATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
Found at i:26830151 original size:59 final size:59
Alignment explanation
Indices: 26829847--26830151 Score: 197
Period size: 57 Copynumber: 5.1 Consensus size: 59
26829837 TATAGTATCA
26829847 TATATTATGATTTTAAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
1 TATATTATGA-TTTAAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
* * * * * * *
26829907 CATA-TAT--TTTAATTAAAATAT-ATTTAATAATAATT-ATT-TCAAATTATATTTTA-TAGTA
1 TATATTATGATTTAAGT-AAAT-TCATATAAGAAT-ATTGATTAT-TAA-GA-ATTTTATTA-AA
26829965 T
59 T
*
26829966 CATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTAAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
* * * * * * *
26830027 CATA-TAT--TTTAATTAAAATAT-ATTTAATAATAATT-ATGT-TAAATTATATTTTA-TAGTA
1 TATATTATGATTTAAGT-AAAT-TCATATAAGAAT-ATTGAT-TATTAA-GA-ATTTTATTA-AA
26830085 T
59 T
*
26830086 CATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTAAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
26830147 TATAT
1 TATAT
26830152 AATTTAATTA
Statistics
Matches: 182, Mismatches: 31, Indels: 65
0.65 0.11 0.23
Matches are distributed among these distances:
56 12 0.07
57 34 0.19
58 18 0.10
59 27 0.15
60 3 0.02
61 22 0.12
62 21 0.12
63 34 0.19
64 11 0.06
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.48
Consensus pattern (59 bp):
TATATTATGATTTAAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
Found at i:26830161 original size:18 final size:18
Alignment explanation
Indices: 26830134--26830169 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
26830124 GATTATTAAG
* *
26830134 AATTTTATTAAATTATAT
1 AATTTAATTAAAATATAT
26830152 AATTTAATTAAAATATAT
1 AATTTAATTAAAATATAT
26830170 TTAATAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
AATTTAATTAAAATATAT
Found at i:26830427 original size:16 final size:16
Alignment explanation
Indices: 26830402--26830448 Score: 76
Period size: 16 Copynumber: 2.9 Consensus size: 16
26830392 TTGATTTGCT
*
26830402 ATTACACCTCTATTCC
1 ATTACGCCTCTATTCC
26830418 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
*
26830434 AATACGCCTCTATTC
1 ATTACGCCTCTATTC
26830449 TAATACAGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.23, C:0.36, G:0.04, T:0.36
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:26830453 original size:16 final size:16
Alignment explanation
Indices: 26830408--26830454 Score: 76
Period size: 16 Copynumber: 2.9 Consensus size: 16
26830398 TGCTATTACA
*
26830408 CCTCTATTCCATTACG
1 CCTCTATTCCAATACG
26830424 CCTCTATTCCAATACG
1 CCTCTATTCCAATACG
*
26830440 CCTCTATTCTAATAC
1 CCTCTATTCCAATAC
26830455 AGTGAACCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.23, C:0.36, G:0.04, T:0.36
Consensus pattern (16 bp):
CCTCTATTCCAATACG
Found at i:26830649 original size:21 final size:21
Alignment explanation
Indices: 26830625--26830673 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
26830615 AAGTTATATG
*
26830625 TATTATAGA-TACATGCAAATA
1 TATTATA-ATTACATGCAAAAA
* *
26830646 TATTTTAATTACATGTAAAAA
1 TATTATAATTACATGCAAAAA
26830667 TATTATA
1 TATTATA
26830674 TGTATAGTCT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 1 0.04
21 22 0.96
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (21 bp):
TATTATAATTACATGCAAAAA
Found at i:26830745 original size:20 final size:21
Alignment explanation
Indices: 26830707--26830746 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
26830697 TTAATATCAA
*
26830707 AATTGTGTACCAACTAATATG
1 AATTGTGTACCAACCAATATG
*
26830728 AATTG-GTACCCACCAATAT
1 AATTGTGTACCAACCAATAT
26830747 AAGTCAGTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.30
Consensus pattern (21 bp):
AATTGTGTACCAACCAATATG
Found at i:26832704 original size:3 final size:3
Alignment explanation
Indices: 26832696--26832731 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
26832686 AAGCTACTGG
*
26832696 TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
26832732 AGCAGATAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:26834298 original size:17 final size:17
Alignment explanation
Indices: 26834274--26834319 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
26834264 AAGGAAAAAA
26834274 AAGAAAAGAA-AGGAAG
1 AAGAAAAGAAGAGGAAG
26834290 AAGGAAAAGAAAAGAGGAAG
1 AA-GAAAAG--AAGAGGAAG
26834310 AAGAAAAGAA
1 AAGAAAAGAA
26834320 CTAACATGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
16 2 0.08
17 8 0.31
19 8 0.31
20 8 0.31
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (17 bp):
AAGAAAAGAAGAGGAAG
Found at i:26835151 original size:16 final size:18
Alignment explanation
Indices: 26835119--26835151 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26835109 ACTAAGAGAA
26835119 TGAATTTAGTGTTAATTG
1 TGAATTTAGTGTTAATTG
26835137 TGAATTT-GT-TTAATT
1 TGAATTTAGTGTTAATT
26835152 TTATGTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 2 0.13
18 7 0.47
ACGTcount: A:0.27, C:0.00, G:0.18, T:0.55
Consensus pattern (18 bp):
TGAATTTAGTGTTAATTG
Found at i:26835842 original size:21 final size:21
Alignment explanation
Indices: 26835803--26835842 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
26835793 ATTGGATTAT
**
26835803 ATATAAAAAAAATCTTTAAAC
1 ATATAAAAAAAATAATTAAAC
*
26835824 ATATAAAAAAATTAATTAA
1 ATATAAAAAAAATAATTAA
26835843 GCCATTGTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (21 bp):
ATATAAAAAAAATAATTAAAC
Found at i:26836172 original size:21 final size:22
Alignment explanation
Indices: 26836140--26836200 Score: 67
Period size: 21 Copynumber: 2.9 Consensus size: 22
26836130 AAAAGTAACC
26836140 AAAAT-AT-TTAAAATATTATA
1 AAAATCATATTAAAATATTATA
26836160 AAAA-CATATTAAAAT-TCTATA
1 AAAATCATATTAAAATAT-TATA
**
26836181 AAAATCATAAAAAAATATTA
1 AAAATCATATTAAAATATTA
26836201 AAATATTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
20 7 0.21
21 15 0.44
22 11 0.32
23 1 0.03
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (22 bp):
AAAATCATATTAAAATATTATA
Found at i:26836195 original size:22 final size:21
Alignment explanation
Indices: 26836156--26836196 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
26836146 TTTAAAATAT
**
26836156 TATAAAAACATATTAAAATTC
1 TATAAAAACATAAAAAAATTC
26836177 TATAAAAATCATAAAAAAAT
1 TATAAAAA-CATAAAAAAAT
26836197 ATTAAAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.29
Consensus pattern (21 bp):
TATAAAAACATAAAAAAATTC
Found at i:26836246 original size:19 final size:18
Alignment explanation
Indices: 26836154--26836248 Score: 57
Period size: 19 Copynumber: 5.1 Consensus size: 18
26836144 TATTTAAAAT
*
26836154 ATTATAAAAACATATTAAA
1 ATTATAAAAAAATA-TAAA
* *
26836173 ATTCTATAAAAATCATAAA
1 ATTATAAAAAAAT-ATAAA
** **
26836192 AAAATATTAAAATATTAAA
1 ATTATAAAAAAATA-TAAA
* *
26836211 ATTGAT-ATAAATTATAAA
1 ATT-ATAAAAAAATATAAA
26836229 ATTATAAAAAAATCATAAA
1 ATTATAAAAAAAT-ATAAA
26836248 A
1 A
26836249 ACTTAAGTTA
Statistics
Matches: 58, Mismatches: 13, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
17 2 0.03
18 13 0.22
19 40 0.69
20 3 0.05
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.32
Consensus pattern (18 bp):
ATTATAAAAAAATATAAA
Found at i:26840088 original size:15 final size:16
Alignment explanation
Indices: 26840079--26840114 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
26840069 TATTTATTTT
26840079 TTTTATATTTATAGTA
1 TTTTATATTTATAGTA
*
26840095 TTTTATATTTAAAGT-
1 TTTTATATTTATAGTA
26840110 TTTTA
1 TTTTA
26840115 AAATTTTGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.64
Consensus pattern (16 bp):
TTTTATATTTATAGTA
Found at i:26844357 original size:3 final size:3
Alignment explanation
Indices: 26844349--26844402 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
26844339 AGCCACACAA
26844349 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
26844397 AAT AAT
1 AAT AAT
26844403 CCATTAAGTA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:26848558 original size:9 final size:10
Alignment explanation
Indices: 26848536--26848570 Score: 56
Period size: 9 Copynumber: 3.7 Consensus size: 10
26848526 TTTAATCAAA
26848536 TATATATATT
1 TATATATATT
26848546 TATATAT-TT
1 TATATATATT
26848555 TATATATATT
1 TATATATATT
26848565 TA-ATAT
1 TATATAT
26848571 GGGTCGGGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 13 0.54
10 11 0.46
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
TATATATATT
Found at i:26849139 original size:19 final size:18
Alignment explanation
Indices: 26849117--26849152 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
26849107 ATAATTTTGA
26849117 AAATTCAAAATATTTATAG
1 AAATTC-AAATATTTATAG
*
26849136 AAATTCTAATATTTATA
1 AAATTCAAATATTTATA
26849153 TTTTTAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.42
Consensus pattern (18 bp):
AAATTCAAATATTTATAG
Found at i:26849163 original size:24 final size:23
Alignment explanation
Indices: 26849126--26849173 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
26849116 AAAATTCAAA
* *
26849126 ATATTTATAGAAATTCTAATATTT
1 ATATTTATAAAAATTATAA-ATTT
*
26849150 ATATTTTTAAAAATTATAAATTT
1 ATATTTATAAAAATTATAAATTT
26849173 A
1 A
26849174 AAAAAACTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (23 bp):
ATATTTATAAAAATTATAAATTT
Found at i:26851893 original size:44 final size:44
Alignment explanation
Indices: 26851793--26852720 Score: 373
Period size: 43 Copynumber: 21.9 Consensus size: 44
26851783 ATGTTAATCC
* * * * *
26851793 GCTCCAC-GCAACCTCAGAGAGATAGGATTAG-ATCTTCAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCT
26851835 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCT
1 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCT
* * * * * * * * * **
26851879 GCTCTACTGTAACTTTAGAGAAATAAGACTGGATGC-GAT-T-T
1 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCT
* * * * * ** * * ** *
26851920 GCT-CTCTGTAACCTCAGAGAGATAAGATCCGTAT-GTCAATCC
1 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCT
* * * *
26851962 GCTCCAC-GCAACCTCAGGGAGATAGGATTAG-ATCTTCAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCT
26852004 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCT
1 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCT
* * ** *
26852048 GCTCTACTGCAACTTCAGGGAGATAGGACT-G--AATGC-GATCT
1 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTG-TCT
* * ** * **
26852089 GCT-CTCTGCAACCTCAGAAAGATAAGATCTGGTTGT-TAAT-TC-
1 GCTCCACTGCAACTTCAGGGAGATAGGAT-TGGTT-TCTTCTGTCT
* *
26852131 GCTCCACTGCAACTTCAGGGAAATATGATTGGTTTCTTCTGTCT
1 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCT
* * ** *
26852175 GCTCCACTGCAACTTCAGGGAGATAAGACT-G--AATGC-GATCT
1 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTG-TCT
* * ** * * * ** *
26852216 GCT-CTCTGCAACCTCAGAAAGATAAGATCTGG-ATGTT-AATCC
1 GCTCCACTGCAACTTCAGGGAGATAGGAT-TGGTTTCTTCTGTCT
* * *
26852258 GCTCTACTGCAACTTCAGGAAGATAGGATTAGTTTCTTCTGTCT
1 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCT
* * * ** *
26852302 GCTCCACTGCAACTTCAGGGGGATAAGACT-G--AATGC-GATCT
1 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTG-TCT
* * ** * * * ** *
26852343 GCT-CTCTGCAACCTCAGAAAGATAAGATCTGG-ATGTT-AATCC
1 GCTCCACTGCAACTTCAGGGAGATAGGAT-TGGTTTCTTCTGTCT
*
26852385 GCTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTTCTGTCT
1 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCT
* * * ** *
26852429 GTTCCACTGCAACTTCAGGGAGATAAGACT-G--AATGC-GATCT
1 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTG-TCT
* * ** * * * ** *
26852470 GCT-CTCTGCAACCTCAGAAAGATAAGATCTGG-ATGTT-AATCC
1 GCTCCACTGCAACTTCAGGGAGATAGGAT-TGGTTTCTTCTGTCT
* *
26852512 GCTCCACTGCAACTTCAGGAAGATAGGATTAGTTTCTTCTGTCT
1 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCT
* * * **
26852556 GCTCCACTGCAACTTCAGGGAGATAAGACTTGATGTGATCTG-CT
1 GCTCCACTGCAACTTCAGGGAGATAGGA-TTGGTTTCTTCTGTCT
* * * ** * ** *
26852600 -CT---CTGCAACCTCAGAGAGATAAGATCCGTATGC--CAATCC
1 GCTCCACTGCAACTTCAGGGAGATAGGATTGGT-TTCTTCTGTCT
* * * * *
26852639 GCTCCACTGCAACCTCAGGGAGATAGGATTAG-ATCTTCAGTTT
1 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCT
26852682 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTC
1 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTC
26852721 AGTTTGTTCT
Statistics
Matches: 650, Mismatches: 182, Indels: 106
0.69 0.19 0.11
Matches are distributed among these distances:
38 1 0.00
39 3 0.00
40 123 0.19
41 44 0.07
42 78 0.12
43 202 0.31
44 191 0.29
45 8 0.01
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (44 bp):
GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCT
Found at i:26852195 original size:127 final size:127
Alignment explanation
Indices: 26852004--26852706 Score: 1126
Period size: 127 Copynumber: 5.5 Consensus size: 127
26851994 TCTTCAGTCT
* * *
26852004 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCTACTGCAACTTCAGGGA
1 GCTCCACTGCAACTTCAGGGAAATAGGATTAGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGGA
* * *
26852069 GATAGGACTGAATGCGATCTGCTCTCTGCAACCTCAGAAAGATAAGATCTGGTTGTTAATTC
66 GATAAGACTGAATGCGATCTGCTCTCTGCAACCTCAGAAAGATAAGATCTGGATGTTAATCC
* *
26852131 GCTCCACTGCAACTTCAGGGAAATATGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGGA
1 GCTCCACTGCAACTTCAGGGAAATAGGATTAGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGGA
26852196 GATAAGACTGAATGCGATCTGCTCTCTGCAACCTCAGAAAGATAAGATCTGGATGTTAATCC
66 GATAAGACTGAATGCGATCTGCTCTCTGCAACCTCAGAAAGATAAGATCTGGATGTTAATCC
*
26852258 GCTCTACTGCAACTTCA-GGAAGATAGGATTAGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGG
1 GCTCCACTGCAACTTCAGGGAA-ATAGGATTAGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGG
*
26852322 GGATAAGACTGAATGCGATCTGCTCTCTGCAACCTCAGAAAGATAAGATCTGGATGTTAATCC
65 AGATAAGACTGAATGCGATCTGCTCTCTGCAACCTCAGAAAGATAAGATCTGGATGTTAATCC
* * * *
26852385 GCTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTTCTGTCTGTTCCACTGCAACTTCAGGGA
1 GCTCCACTGCAACTTCAGGGAAATAGGATTAGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGGA
26852450 GATAAGACTGAATGCGATCTGCTCTCTGCAACCTCAGAAAGATAAGATCTGGATGTTAATCC
66 GATAAGACTGAATGCGATCTGCTCTCTGCAACCTCAGAAAGATAAGATCTGGATGTTAATCC
26852512 GCTCCACTGCAACTTCA-GGAAGATAGGATTAGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGG
1 GCTCCACTGCAACTTCAGGGAA-ATAGGATTAGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGG
* * * * **
26852576 AGATAAGACTTG-ATGTGATCTGCTCTCTGCAACCTCAGAGAGATAAGATCCGTATGCCAATCC
65 AGATAAGAC-TGAATGCGATCTGCTCTCTGCAACCTCAGAAAGATAAGATCTGGATGTTAATCC
* * * * *
26852639 GCTCCACTGCAACCTCAGGGAGATAGGATTAG-ATCTTCAGTTTGCTCCACTGCAACTTCAGGGA
1 GCTCCACTGCAACTTCAGGGAAATAGGATTAGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGGA
26852703 GATA
66 GATA
26852707 GGATTGGTTT
Statistics
Matches: 540, Mismatches: 31, Indels: 11
0.93 0.05 0.02
Matches are distributed among these distances:
126 40 0.07
127 492 0.91
128 8 0.01
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.28
Consensus pattern (127 bp):
GCTCCACTGCAACTTCAGGGAAATAGGATTAGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGGA
GATAAGACTGAATGCGATCTGCTCTCTGCAACCTCAGAAAGATAAGATCTGGATGTTAATCC
Found at i:26852239 original size:40 final size:41
Alignment explanation
Indices: 26852045--26852663 Score: 256
Period size: 44 Copynumber: 14.7 Consensus size: 41
26852035 GTTTCTTCTG
* * *
26852045 TCTGCTCTACTGCAACTTCAGGGAGATAGGACTGAATGCGA
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGACTGAATGCGA
* * * ** **
26852086 TCTGCT-CTCTGCAACCTCAGAAAGATAAGATCTGGTTGTTAA
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGA-CTGAATG-CGA
* * ** *
26852128 T-TCGCTCCACTGCAACTTCAGGGAA-ATATGATTGGTTTCTTCTG-
1 TCT-GCTCCACTGCAACTTCA-GGAAGATAAGACT-G--AATGC-GA
*
26852172 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGAATGCGA
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGACTGAATGCGA
* * * * **
26852213 TCTGCT-CTCTGCAACCTCAGAAAGATAAGATCTGGATGTTAA
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGA-CTGAATG-CGA
* * * * ** *
26852255 TCCGCTCTACTGCAACTTCAGGAAGATAGGATTAGTTTCTTCTG-
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGACT-G--AATGC-GA
**
26852299 TCTGCTCCACTGCAACTTCAGGGGGATAAGACTGAATGCGA
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGACTGAATGCGA
* * * * **
26852340 TCTGCT-CTCTGCAACCTCAGAAAGATAAGATCTGGATGTTAA
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGA-CTGAATG-CGA
* * * * * ** *
26852382 TCCGCTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTTCTG-
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGACT-G--AATGC-GA
* *
26852426 TCTGTTCCACTGCAACTTCAGGGAGATAAGACTGAATGCGA
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGACTGAATGCGA
* * * * **
26852467 TCTGCT-CTCTGCAACCTCAGAAAGATAAGATCTGGATGTTAA
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGA-CTGAATG-CGA
* * * ** *
26852509 TCCGCTCCACTGCAACTTCAGGAAGATAGGATTAGTTTCTTCTG-
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGACT-G--AATGC-GA
* *
26852553 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-ATGTGA
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGAC-TGAATGCGA
* * * * *
26852594 TCTGCT-CTCTGCAACCTCA-GAGAGATAAGATCCGTATGCCAA
1 TCTGCTCCACTGCAACTTCAGGA-AGATAAGA-CTGAATG-CGA
* * *
26852636 TCCGCTCCACTGCAACCTCAGGGAGATA
1 TCTGCTCCACTGCAACTTCAGGAAGATA
26852664 GGATTAGATC
Statistics
Matches: 417, Mismatches: 118, Indels: 84
0.67 0.19 0.14
Matches are distributed among these distances:
39 1 0.00
40 101 0.24
41 64 0.15
42 33 0.08
43 100 0.24
44 112 0.27
45 6 0.01
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (41 bp):
TCTGCTCCACTGCAACTTCAGGAAGATAAGACTGAATGCGA
Found at i:26852528 original size:83 final size:84
Alignment explanation
Indices: 26852175--26852536 Score: 279
Period size: 83 Copynumber: 4.3 Consensus size: 84
26852165 TCTTCTGTCT
* *
26852175 GCTCCACTGCAACTTCAGGGAGATAAGACTGAATGCGATCTGCT-CTCTGCAACCTCAGAAAGAT
1 GCTCCACTGCAACTTCAGGAAGATAAGACTGAATGCGATCTGCTCCACTGCAACCTCAGAAAGAT
26852239 AAGATCTGGATGTTAATCC
66 AAGATCTGGATGTTAATCC
* * * ** * * **
26852258 GCTCTACTGCAACTTCAGGAAGATAGGATTAGTTTCTTCTG-TCTGCTCCACTGCAACTTCAGGG
1 GCTCCACTGCAACTTCAGGAAGATAAGACT-G--AATGC-GATCTGCTCCACTGCAACCTCAGAA
* * ** *
26852322 GGATAAGA-CTGAATG-CGATCT
62 AGATAAGATCTGGATGTTAATCC
* * * * ** * * * **
26852343 GCT-CTCTGCAACCTCAGAAAGATAAGATCTGGATGTTAATCCGCTCCACTGCAACTTTAGGGAG
1 GCTCCACTGCAACTTCAGGAAGATAAGA-CTGAATG-CGATCTGCTCCACTGCAACCTCAGAAAG
* * * ** *
26852407 ATAGGAT-TGGTTTCTTCTGTCT
64 ATAAGATCTGG-ATGTT-AATCC
* * *
26852429 GTTCCACTGCAACTTCAGGGAGATAAGACTGAATGCGATCTGCT-CTCTGCAACCTCAGAAAGAT
1 GCTCCACTGCAACTTCAGGAAGATAAGACTGAATGCGATCTGCTCCACTGCAACCTCAGAAAGAT
26852493 AAGATCTGGATGTTAATCC
66 AAGATCTGGATGTTAATCC
26852512 GCTCCACTGCAACTTCAGGAAGATA
1 GCTCCACTGCAACTTCAGGAAGATA
26852537 GGATTAGTTT
Statistics
Matches: 206, Mismatches: 59, Indels: 28
0.70 0.20 0.10
Matches are distributed among these distances:
82 1 0.00
83 80 0.39
84 44 0.21
85 16 0.08
86 25 0.12
87 40 0.19
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (84 bp):
GCTCCACTGCAACTTCAGGAAGATAAGACTGAATGCGATCTGCTCCACTGCAACCTCAGAAAGAT
AAGATCTGGATGTTAATCC
Found at i:26853966 original size:15 final size:15
Alignment explanation
Indices: 26853954--26853985 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
26853944 CCACTTTTAC
26853954 TTTTTCCATTTTTCA
1 TTTTTCCATTTTTCA
26853969 TTTTT-CA-TTTTCA
1 TTTTTCCATTTTTCA
26853982 TTTT
1 TTTT
26853986 CATTTTTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 10 0.59
14 2 0.12
15 5 0.29
ACGTcount: A:0.12, C:0.16, G:0.00, T:0.72
Consensus pattern (15 bp):
TTTTTCCATTTTTCA
Found at i:26853992 original size:7 final size:7
Alignment explanation
Indices: 26853954--26853992 Score: 55
Period size: 7 Copynumber: 5.7 Consensus size: 7
26853944 CCACTTTTAC
26853954 TTTTTCCA
1 TTTTT-CA
26853962 TTTTTCA
1 TTTTTCA
26853969 TTTTTCA
1 TTTTTCA
26853976 -TTTTCA
1 TTTTTCA
26853982 -TTTTCA
1 TTTTTCA
26853988 TTTTT
1 TTTTT
26853993 TTCACATCTC
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
6 12 0.40
7 13 0.43
8 5 0.17
ACGTcount: A:0.13, C:0.15, G:0.00, T:0.72
Consensus pattern (7 bp):
TTTTTCA
Found at i:26860464 original size:12 final size:11
Alignment explanation
Indices: 26860439--26860469 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 11
26860429 CTGTACATAC
26860439 AATAATAATAT
1 AATAATAATAT
26860450 AATAATAATTAT
1 AATAATAA-TAT
26860462 AATAATAA
1 AATAATAA
26860470 ACAATAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
AATAATAATAT
Found at i:26862072 original size:12 final size:12
Alignment explanation
Indices: 26862055--26862081 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
26862045 TAACTCGAAA
26862055 ATTTTTAACTCG
1 ATTTTTAACTCG
26862067 ATTTTTAACTCG
1 ATTTTTAACTCG
26862079 ATT
1 ATT
26862082 CAACTATAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.15, G:0.07, T:0.52
Consensus pattern (12 bp):
ATTTTTAACTCG
Found at i:26871023 original size:45 final size:45
Alignment explanation
Indices: 26870972--26871062 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
26870962 GCAAGAAAGA
26870972 TCAATTAGACTAAGATGGGAAAAGAACATCTAGCAAATAGAATAT
1 TCAATTAGACTAAGATGGGAAAAGAACATCTAGCAAATAGAATAT
26871017 TCAATTAGACTAAGATGGGAAAAGAACATCTAGCAAATAGAATAT
1 TCAATTAGACTAAGATGGGAAAAGAACATCTAGCAAATAGAATAT
26871062 T
1 T
26871063 TTTAGCATAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.48, C:0.11, G:0.18, T:0.23
Consensus pattern (45 bp):
TCAATTAGACTAAGATGGGAAAAGAACATCTAGCAAATAGAATAT
Found at i:26874844 original size:26 final size:26
Alignment explanation
Indices: 26874808--26874877 Score: 81
Period size: 26 Copynumber: 2.7 Consensus size: 26
26874798 GCCATATGTC
*
26874808 AAAAAAGAAAAAAAT-ATTTAAAATTT
1 AAAAAACAAAAAAATCA-TTAAAATTT
26874834 AAAAAACAAAAAAATCATTAAAA-TT
1 AAAAAACAAAAAAATCATTAAAATTT
**
26874859 AGAAAATTAAAAAAATCAT
1 A-AAAAACAAAAAAATCAT
26874878 AATTTATTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
25 3 0.08
26 35 0.90
27 1 0.03
ACGTcount: A:0.70, C:0.04, G:0.03, T:0.23
Consensus pattern (26 bp):
AAAAAACAAAAAAATCATTAAAATTT
Found at i:26883802 original size:22 final size:22
Alignment explanation
Indices: 26883776--26883818 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
26883766 TCAAAGTTAA
*
26883776 TAGATGACTC-ATACATAAATAG
1 TAGATGAC-CAATAAATAAATAG
26883798 TAGATGACCAATAAATAAATA
1 TAGATGACCAATAAATAAATA
26883819 CTCTTTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 1 0.05
22 18 0.95
ACGTcount: A:0.51, C:0.12, G:0.12, T:0.26
Consensus pattern (22 bp):
TAGATGACCAATAAATAAATAG
Found at i:26887808 original size:14 final size:14
Alignment explanation
Indices: 26887789--26887818 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
26887779 AATTAAGGAG
26887789 ACTATTGGTTTAAT
1 ACTATTGGTTTAAT
*
26887803 ACTATTGGTTTTAT
1 ACTATTGGTTTAAT
26887817 AC
1 AC
26887819 AACTATCCTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.27, C:0.10, G:0.13, T:0.50
Consensus pattern (14 bp):
ACTATTGGTTTAAT
Found at i:26889685 original size:29 final size:30
Alignment explanation
Indices: 26889652--26889708 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
26889642 TTAATTAAAT
* *
26889652 GTGCAATTGTATACATGAAA-TTTAATTTG
1 GTGCAATTATATACAGGAAACTTTAATTTG
*
26889681 GTGCAATTATATACGGGAAACTTTAATT
1 GTGCAATTATATACAGGAAACTTTAATT
26889709 GTGTTTCTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 17 0.71
30 7 0.29
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.39
Consensus pattern (30 bp):
GTGCAATTATATACAGGAAACTTTAATTTG
Found at i:26889930 original size:29 final size:30
Alignment explanation
Indices: 26889883--26889939 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
26889873 GAATTGGATC
*
26889883 AAATCAAAATTTTATGTATAAAATTGCACA
1 AAATCAAAATTGTATGTATAAAATTGCACA
* *
26889913 AAATCAAAGTTGT-TGTATACAATTGCA
1 AAATCAAAATTGTATGTATAAAATTGCA
26889940 TATTAAACCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.33
Consensus pattern (30 bp):
AAATCAAAATTGTATGTATAAAATTGCACA
Found at i:26890559 original size:26 final size:24
Alignment explanation
Indices: 26890519--26890577 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
26890509 TTAATATAAG
* *
26890519 ATTTTAATATTTTAAGCGAATTTTTA
1 ATTTTTATATCTTAA-C-AATTTTTA
*
26890545 ATTTTTATATCTTAACTATTTTTA
1 ATTTTTATATCTTAACAATTTTTA
*
26890569 TTTTTTATA
1 ATTTTTATA
26890578 ATTACATTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 15 0.52
25 1 0.03
26 13 0.45
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.61
Consensus pattern (24 bp):
ATTTTTATATCTTAACAATTTTTA
Found at i:26890626 original size:19 final size:20
Alignment explanation
Indices: 26890604--26890646 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
26890594 AAATATAATC
26890604 ATTTAATT-A-AATTATTAAA
1 ATTTAATTAATAATT-TTAAA
26890623 ATTT-ATTAATAATTTTAAA
1 ATTTAATTAATAATTTTAAA
26890642 ATTTA
1 ATTTA
26890647 TATTTATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 3 0.14
19 14 0.67
20 4 0.19
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
ATTTAATTAATAATTTTAAA
Found at i:26898333 original size:126 final size:126
Alignment explanation
Indices: 26898100--26898350 Score: 421
Period size: 126 Copynumber: 2.0 Consensus size: 126
26898090 AAAACCACGA
* *
26898100 GTAGAAGAGAAAAAAATTCACTATGTCGAATTCAAATGATTACAAAAGAAGTAGACTATGTCTAT
1 GTAGAAGAGAAAAAAATTCACTATGTCGAATTCAAATAATTACAAAAGAAGTAGACTATGTATAT
* * *
26898165 TTATAGGCTTGTAAAACCATATTCTAATAGGAGTGTAGTAAAATTGAAACACCTTATTCTG
66 TTATAGGCTTGTAAAACCATATTCTAATAAGAGCGTAATAAAATTGAAACACCTTATTCTG
* * * *
26898226 GTAGAGGAGAAGAAAATTCACTATGTCGAATTCGAATAATTACAAGAGAAGTAGACTATGTATAT
1 GTAGAAGAGAAAAAAATTCACTATGTCGAATTCAAATAATTACAAAAGAAGTAGACTATGTATAT
26898291 TTATAGGCTTGTAAAACCATATTCTAATAAGAGCGTAATAAAATTGAAACACCTTATTCT
66 TTATAGGCTTGTAAAACCATATTCTAATAAGAGCGTAATAAAATTGAAACACCTTATTCT
26898351 AATTAATATT
Statistics
Matches: 116, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
126 116 1.00
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (126 bp):
GTAGAAGAGAAAAAAATTCACTATGTCGAATTCAAATAATTACAAAAGAAGTAGACTATGTATAT
TTATAGGCTTGTAAAACCATATTCTAATAAGAGCGTAATAAAATTGAAACACCTTATTCTG
Found at i:26914636 original size:44 final size:45
Alignment explanation
Indices: 26914561--26914667 Score: 110
Period size: 44 Copynumber: 2.4 Consensus size: 45
26914551 CCGCTCCACT
* * * * *
26914561 GCAACTTCAGGGAGAT-AGGATTGATGGCTTCAACCTACTTCATA
1 GCAACTTCAGGAAGATAAGGACTGATGACTTCAACCTACTGCACA
* ** * *
26914605 GCAACTTCAGGAAGATAAGG-CTGGTGACTTCAATTTGCTGCACC
1 GCAACTTCAGGAAGATAAGGACTGATGACTTCAACCTACTGCACA
26914649 GCAACTTCAGGAAGATAAG
1 GCAACTTCAGGAAGATAAG
26914668 ATTCGCCATA
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
44 49 0.94
45 3 0.06
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24
Consensus pattern (45 bp):
GCAACTTCAGGAAGATAAGGACTGATGACTTCAACCTACTGCACA
Found at i:26914808 original size:143 final size:143
Alignment explanation
Indices: 26914608--26915102 Score: 631
Period size: 143 Copynumber: 3.5 Consensus size: 143
26914598 CTTCATAGCA
* * * * * *
26914608 ACTTCAGGAAGATAAGGCTGGTGACTTCAATTTGCTGCACCGCAACTTCAGGAAGATAAGATTCG
1 ACTTCAGGGAGATAAGGCTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTCG
* * *
26914673 CCATAATTTGTAGCTTTAATCTATTCCACTGCTACGCCAGGGAAATAAGATTCGATGTCTTCAGT
66 CCATAACTTGTAGCTTTAATCTATTCCACTGCTACGCCAAGGAAATAAGATTCGCTGTCTTCAGT
*
26914738 ATGCTCCGCTGCT
131 CTGCTCCGCTGCT
* * * **
26914751 ACTTTAGGGAGATAAGGCTGGTGGCTACAATCTGCTCCACTATAACTTCAGGAAGATAAGATTCG
1 ACTTCAGGGAGATAAGGCTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTCG
* * * * * *
26914816 TCATAGCTTGCAACTTTAATCTATTCCACTACTACACCAAGG-AA-AAGATTCGCTGTCTTCAGT
66 CCATAACTTGTAGCTTTAATCTATTCCACTGCTACGCCAAGGAAATAAGATTCGCTGTCTTCAGT
26914879 CTGCTCCGCTG-T
131 CTGCTCCGCTGCT
* * * *
26914891 AACTTCAAGGAGATAAGGCTAGTGGTTTCAATCTGCTCCACTGTAACTCCAGGAAGATAAGATTC
1 -ACTTCAGGGAGATAAGGCTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTC
* * * * *
26914956 ACCATAACTTGTAGCTTTAATCTGTTCCACTGCAACGTCAAGGAAATAAGATTTGCTGTCTTCAG
65 GCCATAACTTGTAGCTTTAATCTATTCCACTGCTACGCCAAGGAAATAAGATTCGCTGTCTTCAG
26915021 TCTGCTCCGCTGCT
130 TCTGCTCCGCTGCT
* * *
26915035 ACTTCAGGGAGAT-AGAACTATTGGCTTTAATCTGCTCCACTGCAACTTCA-GAGAGATAAGATT
1 ACTTCAGGGAGATAAG-GCTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGA-AGATAAGATT
26915098 CGCCA
64 CGCCA
26915103 ACTTCTTCAA
Statistics
Matches: 301, Mismatches: 45, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
140 1 0.00
141 118 0.39
142 8 0.03
143 173 0.57
144 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (143 bp):
ACTTCAGGGAGATAAGGCTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTCG
CCATAACTTGTAGCTTTAATCTATTCCACTGCTACGCCAAGGAAATAAGATTCGCTGTCTTCAGT
CTGCTCCGCTGCT
Found at i:26915461 original size:24 final size:24
Alignment explanation
Indices: 26915425--26915480 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
26915415 CAGATTGCCC
*
26915425 CCACTGTAGTCTTCAAGGTTCAAT
1 CCACTGTAATCTTCAAGGTTCAAT
*
26915449 CCACTGTAATCTTCTAGGTTCAAT
1 CCACTGTAATCTTCAAGGTTCAAT
26915473 CCACTGTA
1 CCACTGTA
26915481 CTTTTGGGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.34
Consensus pattern (24 bp):
CCACTGTAATCTTCAAGGTTCAAT
Found at i:26936693 original size:31 final size:31
Alignment explanation
Indices: 26936656--26936722 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
26936646 CTTTAAAAAA
26936656 AAATAGTCCAATGACTTAAATAAAAAATTTT
1 AAATAGTCCAATGACTTAAATAAAAAATTTT
*** * *
26936687 AAATAGTTTGATGACTTAAATGAAAACTTTT
1 AAATAGTCCAATGACTTAAATAAAAAATTTT
*
26936718 GAATA
1 AAATA
26936723 ATTCAGTAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.48, C:0.07, G:0.10, T:0.34
Consensus pattern (31 bp):
AAATAGTCCAATGACTTAAATAAAAAATTTT
Found at i:26937898 original size:20 final size:19
Alignment explanation
Indices: 26937853--26937898 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
26937843 AGATAAATAT
*
26937853 TTAATTTATTTTAATATTAA
1 TTAA-TTATTTTAACATTAA
26937873 TATAATTATTTTAACATTAAA
1 T-TAATTATTTTAACATT-AA
26937894 TTAAT
1 TTAAT
26937899 AAAATACTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 17 0.74
21 6 0.26
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.54
Consensus pattern (19 bp):
TTAATTATTTTAACATTAA
Found at i:26943222 original size:30 final size:31
Alignment explanation
Indices: 26943173--26943235 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 31
26943163 AGTATTTTTC
26943173 TTCTAATTTTCTCTTTTCAAATTTGAACATT
1 TTCTAATTTTCTCTTTTCAAATTTGAACATT
26943204 TTCTAATTTTCT-TTTTCAAATTTGAACATT
1 TTCTAATTTTCTCTTTTCAAATTTGAACATT
26943234 TT
1 TT
26943236 ACTGAGATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 20 0.62
31 12 0.38
ACGTcount: A:0.25, C:0.14, G:0.03, T:0.57
Consensus pattern (31 bp):
TTCTAATTTTCTCTTTTCAAATTTGAACATT
Found at i:26947814 original size:17 final size:17
Alignment explanation
Indices: 26947794--26947826 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
26947784 ACTTTAAAAT
26947794 TATATATTTTTTAATTA
1 TATATATTTTTTAATTA
26947811 TATATATTTTTTAATT
1 TATATATTTTTTAATT
26947827 TTTAAGTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TATATATTTTTTAATTA
Found at i:26949212 original size:32 final size:32
Alignment explanation
Indices: 26949171--26949232 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
26949161 CATCTATTTT
26949171 CATTGTTCAACTCTTTGACAACACGAAAAATC
1 CATTGTTCAACTCTTTGACAACACGAAAAATC
*
26949203 CATTGTTCAACTCTTTGACAACATGAAAAA
1 CATTGTTCAACTCTTTGACAACACGAAAAA
26949233 AACCAAAAGC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.29
Consensus pattern (32 bp):
CATTGTTCAACTCTTTGACAACACGAAAAATC
Found at i:26951855 original size:21 final size:20
Alignment explanation
Indices: 26951825--26951864 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
26951815 TTTAGTAAAA
26951825 ATTTAAAGAAACATATTATAT
1 ATTTAAAGAAA-ATATTATAT
* *
26951846 ATTTAGAGAAAATGTTATA
1 ATTTAAAGAAAATATTATA
26951865 AATAATTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.50, C:0.03, G:0.10, T:0.38
Consensus pattern (20 bp):
ATTTAAAGAAAATATTATAT
Found at i:26952304 original size:2 final size:2
Alignment explanation
Indices: 26952297--26952332 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
26952287 GGAAGCGAGC
26952297 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
26952333 TCCCATCTGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:26971453 original size:19 final size:20
Alignment explanation
Indices: 26971420--26971475 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
26971410 TACTTGAAAT
*
26971420 TTATTTTAAATTTTTATAATA
1 TTATTTTCAATTTTTAT-ATA
26971441 TT-TTTTCAATTTTTATATA
1 TTATTTTCAATTTTTATATA
*
26971460 TTATTTTGAATTTTTA
1 TTATTTTCAATTTTTA
26971476 AAATTTAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
19 5 0.16
20 25 0.78
21 2 0.06
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (20 bp):
TTATTTTCAATTTTTATATA
Found at i:26972016 original size:12 final size:11
Alignment explanation
Indices: 26971986--26972029 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
26971976 ATTTTATAAA
*
26971986 AAAATATTTTT
1 AAAATTTTTTT
*
26971997 AAACTTTTTTT
1 AAAATTTTTTT
26972008 AAAAATTTTTTT
1 -AAAATTTTTTT
*
26972020 ACAATTTTTT
1 AAAATTTTTT
26972030 ATGATTTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
11 18 0.64
12 10 0.36
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (11 bp):
AAAATTTTTTT
Found at i:26972055 original size:19 final size:19
Alignment explanation
Indices: 26972015--26972057 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
26972005 TTTAAAAATT
* *
26972015 TTTTTACAATTTTTTATGA
1 TTTTTACAATTATTTATCA
26972034 TTTTTACAATTCATTTA-CA
1 TTTTTACAATT-ATTTATCA
26972053 TTTTT
1 TTTTT
26972058 CGCAATAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.26, C:0.09, G:0.02, T:0.63
Consensus pattern (19 bp):
TTTTTACAATTATTTATCA
Found at i:26975001 original size:19 final size:19
Alignment explanation
Indices: 26974956--26974995 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
26974946 AGTTCATGTT
* *
26974956 TTCATTTCACATTTTCATA
1 TTCAATTCACATTTTCAAA
*
26974975 TTCAATTCACTTTTTCAAA
1 TTCAATTCACATTTTCAAA
26974994 TT
1 TT
26974996 ATATTCCACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.28, C:0.20, G:0.00, T:0.53
Consensus pattern (19 bp):
TTCAATTCACATTTTCAAA
Found at i:26975194 original size:6 final size:6
Alignment explanation
Indices: 26975164--26975205 Score: 57
Period size: 6 Copynumber: 6.8 Consensus size: 6
26975154 AGTACCTGAT
* *
26975164 CAGTAA TCAGTAA CGGTAG CAGTAA CAGTAA CAGTAA CAGTA
1 CAGTAA -CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTA
26975206 TTCAACACAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
6 25 0.81
7 6 0.19
ACGTcount: A:0.43, C:0.17, G:0.21, T:0.19
Consensus pattern (6 bp):
CAGTAA
Found at i:26975234 original size:33 final size:33
Alignment explanation
Indices: 26975197--26975271 Score: 123
Period size: 33 Copynumber: 2.3 Consensus size: 33
26975187 AACAGTAACA
* *
26975197 GTAACAGTATTCAACACACAAAGTGTTGAATCT
1 GTAACAGTATTCAACACACAAAGTGTCGAATCG
*
26975230 GTAACAGTATTCGACACACAAAGTGTCGAATCG
1 GTAACAGTATTCAACACACAAAGTGTCGAATCG
26975263 GTAACAGTA
1 GTAACAGTA
26975272 ATAGTAGTCG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.24
Consensus pattern (33 bp):
GTAACAGTATTCAACACACAAAGTGTCGAATCG
Found at i:26975352 original size:135 final size:133
Alignment explanation
Indices: 26975162--26975513 Score: 462
Period size: 135 Copynumber: 2.6 Consensus size: 133
26975152 ATAGTACCTG
* *
26975162 ATCAGTAATCAGTAACGGTAGCAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGTTGAA
1 ATCAGTAATCAGTAAC-GTAGTAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAA
* *
26975227 TCTGTAACAGTATTCGACACACAAAGTGTCGAATCGGTAACAGTAATAGTAGTCGGCACGTAAGT
65 TCTGTAACAGTATTCGACACACAAAGTGTCGAATC-GTAACAGTAACAGTAGTCGGCACATAAGT
26975292 GCCTA
129 GCCTA
* * *
26975297 ATTAGTAATTAGTAACTGTAGTAGTAACAATAACAGTAACAGTATTCAACACACAAAGTGCTGAA
1 ATCAGTAATCAGTAAC-GTAGTAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAA
26975362 TCTGTAACAGTAACGGTAACAGCATTCGACACACAAAGTGTCGAATCGTAACAGTAACAGTAGTC
65 TCTGTAAC----A--GT------ATTCGACACACAAAGTGTCGAATCGTAACAGTAACAGTAGTC
*
26975427 GGCACATAAGTGCCTG
118 GGCACATAAGTGCCTA
26975443 ATCAGTAATCAGTAACG--GTAG---CAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAAT
1 ATCAGTAATCAGTAACGTAGTAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAAT
26975503 CTGTAACAGTA
66 CTGTAACAGTA
26975514 ATGGTAACAG
Statistics
Matches: 193, Mismatches: 12, Indels: 31
0.82 0.05 0.13
Matches are distributed among these distances:
128 1 0.01
134 2 0.01
135 67 0.35
136 1 0.01
139 1 0.01
140 45 0.23
141 2 0.01
143 4 0.02
145 1 0.01
146 45 0.23
147 24 0.12
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.23
Consensus pattern (133 bp):
ATCAGTAATCAGTAACGTAGTAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAAT
CTGTAACAGTATTCGACACACAAAGTGTCGAATCGTAACAGTAACAGTAGTCGGCACATAAGTGC
CTA
Found at i:26975394 original size:45 final size:45
Alignment explanation
Indices: 26975320--26975559 Score: 158
Period size: 45 Copynumber: 5.2 Consensus size: 45
26975310 AACTGTAGTA
* * * *
26975320 GTAACAATAACAGTAACAGTATTCAACACACAAAGTGCTGAATCT
1 GTAACAGTAACGGTAACAGCATTCGACACACAAAGTGCTGAATCT
26975365 GTAACAGTAACGGTAACAGCATTCGACACACAAAGTG-TCGAATC-
1 GTAACAGTAACGGTAACAGCATTCGACACACAAAGTGCT-GAATCT
* * * *
26975409 GTAACAGTAACAGT---AG---TCGGCACA-TAAGTGCCTG-ATCA
1 GTAACAGTAACGGTAACAGCATTCGACACACAAAGTG-CTGAATCT
*
26975447 GTAATCAGTAACGGTAGCAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCT
1 GTAA-CAGTAAC----G--GTAACAG---C---ATTCGACACACAAAGTGCTGAATCT
* * * *
26975505 GTAACAGTAATGGTAACAGTATTCGCCACACAAAGTGCTGAATCG
1 GTAACAGTAACGGTAACAGCATTCGACACACAAAGTGCTGAATCT
26975550 GTAACAGTAA
1 GTAACAGTAA
26975560 TAGTAGTTGG
Statistics
Matches: 153, Mismatches: 17, Indels: 50
0.70 0.08 0.23
Matches are distributed among these distances:
37 8 0.05
38 12 0.08
39 8 0.05
41 2 0.01
44 14 0.09
45 72 0.47
48 2 0.01
51 7 0.05
53 1 0.01
57 15 0.10
58 12 0.08
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (45 bp):
GTAACAGTAACGGTAACAGCATTCGACACACAAAGTGCTGAATCT
Found at i:26975513 original size:57 final size:57
Alignment explanation
Indices: 26975409--26975525 Score: 139
Period size: 57 Copynumber: 2.1 Consensus size: 57
26975399 GTGTCGAATC
** * *
26975409 GTAACAGTAACAGTAGTCGGCACATAAGTGCCTGATCAGTAATCAGTAACGGTAGCA
1 GTAACAGTAACAGTAGTCAACACAAAAGTGCCTGATCAGTAATCAGTAACGGTAACA
* * *
26975466 GTAACAGTAACAGTATTCAACACACAAAGTG-CTGAATCTGTAA-CAGTAATGGTAACA
1 GTAACAGTAACAGTAGTCAACACA-AAAGTGCCTG-ATCAGTAATCAGTAACGGTAACA
26975523 GTA
1 GTA
26975526 TTCGCCACAC
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
57 39 0.76
58 12 0.24
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.22
Consensus pattern (57 bp):
GTAACAGTAACAGTAGTCAACACAAAAGTGCCTGATCAGTAATCAGTAACGGTAACA
Found at i:26975535 original size:140 final size:144
Alignment explanation
Indices: 26975230--26975591 Score: 563
Period size: 140 Copynumber: 2.5 Consensus size: 144
26975220 TGTTGAATCT
*
26975230 GTAACAGTATTCGACACACAAAGTGTCGAATCGGTAACAGTAATAGTAGTCGGCACGTAAGTGCC
1 GTAACAGTATTCGACACACAAAGTGTCGAATCGGTAACAGTAATAGTAGTCGGCACATAAGTGCC
* * *
26975295 TAATTAGTAATTAGTAACTGTAGTAGTAACAATAACAGTAACAGTATTCAACACACAAAGTGCTG
66 TGATCAGTAATCAGTAACTG-AGTAG--ACAATAACAGTAACAGTATTCAACACACAAAGTGCTG
26975360 AATCTGTAACAGTAACG
128 AATCTGTAACAGTAACG
* *
26975377 GTAACAGCATTCGACACACAAAGTGTCGAATC-GTAACAGTAACAGTAGTCGGCACATAAGTGCC
1 GTAACAGTATTCGACACACAAAGTGTCGAATCGGTAACAGTAATAGTAGTCGGCACATAAGTGCC
*
26975441 TGATCAGTAATCAGTAAC-G-GTAG-CAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAAT
66 TGATCAGTAATCAGTAACTGAGTAGACAATAACAGTAACAGTATTCAACACACAAAGTGCTGAAT
*
26975503 CTGTAACAGTAATG
131 CTGTAACAGTAACG
* *
26975517 GTAACAGTATTCGCCACACAAAGTG-CTGAATCGGTAACAGTAATAGTAGTTGGCACATAAGTGC
1 GTAACAGTATTCGACACACAAAGTGTC-GAATCGGTAACAGTAATAGTAGTCGGCACATAAGTGC
26975581 CTGATCAGTAA
65 CTGATCAGTAA
26975592 GCCGACAAAA
Statistics
Matches: 201, Mismatches: 12, Indels: 10
0.90 0.05 0.04
Matches are distributed among these distances:
139 1 0.00
140 79 0.39
141 40 0.20
143 4 0.02
145 1 0.00
146 45 0.22
147 31 0.15
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.23
Consensus pattern (144 bp):
GTAACAGTATTCGACACACAAAGTGTCGAATCGGTAACAGTAATAGTAGTCGGCACATAAGTGCC
TGATCAGTAATCAGTAACTGAGTAGACAATAACAGTAACAGTATTCAACACACAAAGTGCTGAAT
CTGTAACAGTAACG
Done.