Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63323194
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1953226 characters in sequence are not A, C, G, or T
File 87 of 199
Found at i:30573209 original size:19 final size:20
Alignment explanation
Indices: 30573187--30573229 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
30573177 ATTTTCTATT
30573187 TTTTCGTTCTTTTT-TTT-CC
1 TTTTC-TTCTTTTTCTTTCCC
*
30573206 TTTTCTTTTTTTTCTTTCCC
1 TTTTCTTCTTTTTCTTTCCC
30573226 TTTT
1 TTTT
30573230 TTCATTCTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 7 0.33
19 8 0.38
20 6 0.29
ACGTcount: A:0.00, C:0.21, G:0.02, T:0.77
Consensus pattern (20 bp):
TTTTCTTCTTTTTCTTTCCC
Found at i:30573211 original size:15 final size:14
Alignment explanation
Indices: 30573178--30573246 Score: 68
Period size: 15 Copynumber: 4.7 Consensus size: 14
30573168 TTTTATTCTA
*
30573178 TTTTCTATTTTTTC
1 TTTTCTTTTTTTTC
*
30573192 -GTTCTTTTTTTTCC
1 TTTTCTTTTTTTT-C
30573206 TTTTCTTTTTTTTC
1 TTTTCTTTTTTTTC
*
30573220 TTTCCCTTTTTTCATTC
1 TTT-TCTTTTTT--TTC
30573237 TTTTCTTTTT
1 TTTTCTTTTT
30573247 ATGTGCTTCT
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
13 10 0.22
14 5 0.11
15 18 0.40
16 6 0.13
17 6 0.13
ACGTcount: A:0.03, C:0.19, G:0.01, T:0.77
Consensus pattern (14 bp):
TTTTCTTTTTTTTC
Found at i:30573229 original size:28 final size:29
Alignment explanation
Indices: 30573168--30573246 Score: 79
Period size: 28 Copynumber: 2.7 Consensus size: 29
30573158 TTGAACGCTT
* * **
30573168 TTTTATTCTATTTTCTATTTTTTCGTTCTT
1 TTTT-TTCTCTTTTCTTTTTTTTCGTTCCC
*
30573198 TTTTTTC-CTTTTCTTTTTTTTCTTTCCC
1 TTTTTTCTCTTTTCTTTTTTTTCGTTCCC
30573226 TTTTTTCATTCTTTTCTTTTT
1 TTTTTTC--TCTTTTCTTTTT
30573247 ATGTGCTTCT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
28 23 0.56
29 3 0.07
30 4 0.10
31 11 0.27
ACGTcount: A:0.05, C:0.18, G:0.01, T:0.76
Consensus pattern (29 bp):
TTTTTTCTCTTTTCTTTTTTTTCGTTCCC
Found at i:30575295 original size:42 final size:43
Alignment explanation
Indices: 30575139--30575402 Score: 266
Period size: 43 Copynumber: 6.2 Consensus size: 43
30575129 AACTTTTGCA
* * * *
30575139 GCGCTTACAGAAAAAAATGCCGCTAAAGGTCATGTTCTTTAGCG
1 GCGCTTA-GGAAAAAAACGCCGCTAAAAGTAATGTTCTTTAGCG
* * * *
30575183 GCGCTTAGGAAAAAAACACCGCT-AATGATCATGTTCTTTAGTG
1 GCGCTTAGGAAAAAAACGCCGCTAAAAG-TAATGTTCTTTAGCG
* *
30575226 GCGCTTAGGAAAAAAACGCTGCTAAAAGTAATGTTCTATAGCG
1 GCGCTTAGGAAAAAAACGCCGCTAAAAGTAATGTTCTTTAGCG
* * *
30575269 GCGCTT-GGTAAAAAACGTCGCTAAAAGTAATGTTCTATAGCG
1 GCGCTTAGGAAAAAAACGCCGCTAAAAGTAATGTTCTTTAGCG
* *
30575311 GCGCTT-GGTAGAAAACGCCGCTAAAAGTAATGTTCTTTAGCG
1 GCGCTTAGGAAAAAAACGCCGCTAAAAGTAATGTTCTTTAGCG
*** * * * *
30575353 GCGCTTCA-TCTACAAACGCCACTAAAAGTAGTGTTCTTTCGCG
1 GCGCTT-AGGAAAAAAACGCCGCTAAAAGTAATGTTCTTTAGCG
*
30575396 GTGCTTA
1 GCGCTTA
30575403 TTTCACAAAC
Statistics
Matches: 190, Mismatches: 26, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
42 82 0.43
43 98 0.52
44 10 0.05
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.27
Consensus pattern (43 bp):
GCGCTTAGGAAAAAAACGCCGCTAAAAGTAATGTTCTTTAGCG
Found at i:30575344 original size:84 final size:86
Alignment explanation
Indices: 30575139--30575358 Score: 266
Period size: 84 Copynumber: 2.6 Consensus size: 86
30575129 AACTTTTGCA
* * * *
30575139 GCGCTTACAGAAAAAAATGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTAGGAAAAAAACACCG
1 GCGCTTA-GGAAAAAAACGCCGCTAAAAGTAATGTTCTTTAGCGGCGCTTAGGAAAAAAACACCG
* * * *
30575204 CTAATGATCATGTTCTTTAGTG
65 CTAAAGATAATGTTCTATAGCG
* * * **
30575226 GCGCTTAGGAAAAAAACGCTGCTAAAAGTAATGTTCTATAGCGGCGCTT-GGTAAAAAACGTCGC
1 GCGCTTAGGAAAAAAACGCCGCTAAAAGTAATGTTCTTTAGCGGCGCTTAGGAAAAAAACACCGC
30575290 TAAA-AGTAATGTTCTATAGCG
66 TAAAGA-TAATGTTCTATAGCG
* *
30575311 GCGCTT-GGTAGAAAACGCCGCTAAAAGTAATGTTCTTTAGCGGCGCTT
1 GCGCTTAGGAAAAAAACGCCGCTAAAAGTAATGTTCTTTAGCGGCGCTT
30575359 CATCTACAAA
Statistics
Matches: 115, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
84 39 0.34
85 33 0.29
86 36 0.31
87 7 0.06
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.26
Consensus pattern (86 bp):
GCGCTTAGGAAAAAAACGCCGCTAAAAGTAATGTTCTTTAGCGGCGCTTAGGAAAAAAACACCGC
TAAAGATAATGTTCTATAGCG
Found at i:30575411 original size:43 final size:43
Alignment explanation
Indices: 30575247--30575419 Score: 163
Period size: 42 Copynumber: 4.1 Consensus size: 43
30575237 AAAAACGCTG
* ** * * * *
30575247 CTAAAAGTAATGTTCTATAGCGGCGCTTGGT-AAAAAACGTCG
1 CTAAAAGTAATGTTCTTTAGCGGCGCTTCATCTACAAACGCCA
* ** ** *
30575289 CTAAAAGTAATGTTCTATAGCGGCGCTTGGTAGA-AAACGCCG
1 CTAAAAGTAATGTTCTTTAGCGGCGCTTCATCTACAAACGCCA
30575331 CTAAAAGTAATGTTCTTTAGCGGCGCTTCATCTACAAACGCCA
1 CTAAAAGTAATGTTCTTTAGCGGCGCTTCATCTACAAACGCCA
* * * *
30575374 CTAAAAGTAGTGTTCTTTCGCGGTGCTT-ATTTCACAAACGCCA
1 CTAAAAGTAATGTTCTTTAGCGGCGCTTCATCT-ACAAACGCCA
30575417 CTA
1 CTA
30575420 TATGATATGA
Statistics
Matches: 116, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
42 70 0.60
43 46 0.40
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (43 bp):
CTAAAAGTAATGTTCTTTAGCGGCGCTTCATCTACAAACGCCA
Found at i:30575876 original size:21 final size:21
Alignment explanation
Indices: 30575850--30575898 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
30575840 GCTTCTCTCG
*
30575850 CTGCTTCTCTCACTGCGGCCT
1 CTGCTTCTCTCACTGCAGCCT
** *
30575871 CTGCTTCTCTTGCTGTAGCCT
1 CTGCTTCTCTCACTGCAGCCT
30575892 CTGCTTC
1 CTGCTTC
30575899 CCTTGCTGCC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.04, C:0.39, G:0.18, T:0.39
Consensus pattern (21 bp):
CTGCTTCTCTCACTGCAGCCT
Found at i:30575903 original size:21 final size:21
Alignment explanation
Indices: 30575867--30575906 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
30575857 TCTCACTGCG
*
30575867 GCCTCTGCTTCTCTTGCTGTA
1 GCCTCTGCTTCCCTTGCTGTA
30575888 GCCTCTGCTTCCCTTGCTG
1 GCCTCTGCTTCCCTTGCTG
30575907 CCACCTCTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.03, C:0.38, G:0.20, T:0.40
Consensus pattern (21 bp):
GCCTCTGCTTCCCTTGCTGTA
Found at i:30575913 original size:21 final size:21
Alignment explanation
Indices: 30575862--30575915 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
30575852 GCTTCTCTCA
* *
30575862 CTGCGGCCTCTGCTTCTCTTG
1 CTGCAGCCTCTGCTTCCCTTG
*
30575883 CTGTAGCCTCTGCTTCCCTTG
1 CTGCAGCCTCTGCTTCCCTTG
30575904 CTGCCA-CCTCTG
1 CTG-CAGCCTCTG
30575916 TTTTAAGTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 27 0.96
22 1 0.04
ACGTcount: A:0.04, C:0.41, G:0.20, T:0.35
Consensus pattern (21 bp):
CTGCAGCCTCTGCTTCCCTTG
Found at i:30581433 original size:25 final size:25
Alignment explanation
Indices: 30581405--30581509 Score: 115
Period size: 25 Copynumber: 4.2 Consensus size: 25
30581395 GTTACATAAT
**
30581405 TTATGTATTAAGTAAAATATGTAAG
1 TTATGTATTAAGTAAGTTATGTAAG
30581430 TTATGTACGTGT-A-TAAGTTATGTAAG
1 TTATGTA--T-TAAGTAAGTTATGTAAG
*
30581456 TTATGTATTAAGTAAGCTATGTAAG
1 TTATGTATTAAGTAAGTTATGTAAG
* * *
30581481 TTGTGTATTATGTAACTTATGTAAG
1 TTATGTATTAAGTAAGTTATGTAAG
30581506 TTAT
1 TTAT
30581510 CAAAGTAATG
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
23 1 0.01
24 2 0.03
25 43 0.64
26 18 0.27
27 2 0.03
28 1 0.01
ACGTcount: A:0.34, C:0.03, G:0.19, T:0.44
Consensus pattern (25 bp):
TTATGTATTAAGTAAGTTATGTAAG
Found at i:30581434 original size:9 final size:9
Alignment explanation
Indices: 30581422--30582049 Score: 269
Period size: 9 Copynumber: 71.1 Consensus size: 9
30581412 TTAAGTAAAA
30581422 TATGTAAGT
1 TATGTAAGT
*
30581431 TATGTACGT
1 TATGTAAGT
30581440 GTA--TAAGT
1 -TATGTAAGT
30581448 TATGTAAGT
1 TATGTAAGT
30581457 TATGT-A-T
1 TATGTAAGT
* *
30581464 TAAGTAAGC
1 TATGTAAGT
30581473 TATGTAAGT
1 TATGTAAGT
*
30581482 TGTGT-A-T
1 TATGTAAGT
*
30581489 TATGTAACT
1 TATGTAAGT
30581498 TATGTAAGT
1 TATGTAAGT
**
30581507 TATCAAAGT
1 TATGTAAGT
* *
30581516 AATGTATGT
1 TATGTAAGT
30581525 TATGTAAG-
1 TATGTAAGT
30581533 T-TGTAAGT
1 TATGTAAGT
30581541 TATGT-A-T
1 TATGTAAGT
*
30581548 TATGTAACT
1 TATGTAAGT
30581557 TATGTAAGT
1 TATGTAAGT
* *
30581566 TAT-CAAAT
1 TATGTAAGT
*
30581574 TAATGTATGT
1 T-ATGTAAGT
30581584 TATGTAAG-
1 TATGTAAGT
30581592 T-TGTAAGT
1 TATGTAAGT
*
30581600 TAT-TATGTAT
1 TATGTAAG--T
30581610 TATGTAAGT
1 TATGTAAGT
30581619 TATGTAAGT
1 TATGTAAGT
30581628 TATGTAAGT
1 TATGTAAGT
30581637 TATGTAAGT
1 TATGTAAGT
30581646 TATGT-A-T
1 TATGTAAGT
*
30581653 TATGTAGGT
1 TATGTAAGT
30581662 TATGTAAGT
1 TATGTAAGT
* *
30581671 TGTGTAAGA
1 TATGTAAGT
*
30581680 TATTTAAGT
1 TATGTAAGT
30581689 TATGTAAGT
1 TATGTAAGT
*
30581698 TTTGT-A-T
1 TATGTAAGT
30581705 TATGTAAGT
1 TATGTAAGT
* *
30581714 TATGTATGC
1 TATGTAAGT
30581723 TATGT-A-T
1 TATGTAAGT
*
30581730 TATGTAATTTTT
1 TATGTAA---GT
*
30581742 TATGTTA-T
1 TATGTAAGT
30581750 TATGTAAGT
1 TATGTAAGT
*
30581759 TATGCAAGTT
1 TATGTAAG-T
*
30581769 TAAATATAAGCT
1 T--ATGTAAG-T
* *
30581781 TGTAGATAACT
1 TAT-G-TAAGT
30581792 TATGTAAGTT
1 TATGTAAG-T
*
30581802 AATATGTAAGC
1 --TATGTAAGT
*
30581813 AATGT-A-T
1 TATGTAAGT
30581820 TATGTAAGTT
1 TATGTAAG-T
* *
30581830 TATATAAAAATTT
1 TATGT---AA-GT
*
30581843 TATATAAGT
1 TATGTAAGT
*
30581852 TATG-GA-T
1 TATGTAAGT
30581859 TATGTAAGGT
1 TATGTAA-GT
* *
30581869 AGCATATAAGTT
1 --TATGTAAG-T
30581881 TATGTAAGT
1 TATGTAAGT
30581890 TATG--A--
1 TATGTAAGT
30581895 -ATGTAAGT
1 TATGTAAGT
30581903 TATGT-A-T
1 TATGTAAGT
*
30581910 TGTGTAAGT
1 TATGTAAGT
* *
30581919 TATTTAAAT
1 TATGTAAGT
*
30581928 TATTTAAGT
1 TATGTAAGT
*
30581937 TGTGT-A-T
1 TATGTAAGT
30581944 TATGTAAGT
1 TATGTAAGT
* * *
30581953 CATGTAGGC
1 TATGTAAGT
30581962 TATGT--GT
1 TATGTAAGT
30581969 TATGTAAGT
1 TATGTAAGT
30581978 TAT-T-A--
1 TATGTAAGT
*
30581983 TAAGTAAGT
1 TATGTAAGT
*
30581992 TATGAAAGTT
1 TATGTAAG-T
*
30582002 ATATATAAGT
1 -TATGTAAGT
30582012 TATGTAAGT
1 TATGTAAGT
30582021 TATTGTGTAAGT
1 TA---TGTAAGT
30582033 TATGT--GT
1 TATGTAAGT
*
30582040 TGTGTAAGT
1 TATGTAAGT
30582049 T
1 T
30582050 TATATATAAG
Statistics
Matches: 463, Mismatches: 85, Indels: 142
0.67 0.12 0.21
Matches are distributed among these distances:
4 3 0.01
5 2 0.00
6 2 0.00
7 80 0.17
8 41 0.09
9 244 0.53
10 30 0.06
11 13 0.03
12 40 0.09
13 8 0.02
ACGTcount: A:0.33, C:0.02, G:0.19, T:0.45
Consensus pattern (9 bp):
TATGTAAGT
Found at i:30581460 original size:51 final size:50
Alignment explanation
Indices: 30581405--30581509 Score: 138
Period size: 51 Copynumber: 2.1 Consensus size: 50
30581395 GTTACATAAT
* *
30581405 TTATGTATTAAGTAAAATATGTAAGTTATGTACGTGTATAAGTTATGTAAG
1 TTATGTATTAAGTAAAATATGTAAGTTATGTA-GTATATAACTTATGTAAG
** * * *
30581456 TTATGTATTAAGTAAGCTATGTAAGTTGTGTATTATGTAACTTATGTAAG
1 TTATGTATTAAGTAAAATATGTAAGTTATGTAGTATATAACTTATGTAAG
30581506 TTAT
1 TTAT
30581510 CAAAGTAATG
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
50 18 0.38
51 29 0.62
ACGTcount: A:0.34, C:0.03, G:0.19, T:0.44
Consensus pattern (50 bp):
TTATGTATTAAGTAAAATATGTAAGTTATGTAGTATATAACTTATGTAAG
Found at i:30581521 original size:59 final size:58
Alignment explanation
Indices: 30581443--30581736 Score: 252
Period size: 59 Copynumber: 4.9 Consensus size: 58
30581433 TGTACGTGTA
** * * *
30581443 TAAGTTATGTAAGTTATGTA-TTAAGTAAGCTATGTAAGTTGTGTATTATGTAACTTATG
1 TAAGTTATCAAAGTAATGTAGTTATGTAAG-T-TGTAAGTTATGTATTATGTAACTTATG
30581502 TAAGTTATCAAAGTAATGTATGTTATGTAAGTTGTAAGTTATGTATTATGTAACTTATG
1 TAAGTTATCAAAGTAATGTA-GTTATGTAAGTTGTAAGTTATGTATTATGTAACTTATG
* *
30581561 TAAGTTATCAAATTAATGTATGTTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTATG
1 TAAGTTATCAAAGTAATGTA-GTTATGTAAGTTGTAAG---TTATGTATTATGTAACTTATG
** * * * * ** *
30581623 TAAGTTATGTAAGTTATGTAAGTTATGT-ATTATGTAGGTTATGTAAGTTGTGTAAGATATT
1 TAAGTTATCAAAGTAATGT-AGTTATGTAAGT-TGTAAGTTATGT-A-TTATGTAACTTATG
** ** * *
30581684 TAAGTTATGTAAGTTTTGTA-TTATGTAAGTTATGTATGCTATGTATTATGTAA
1 TAAGTTATCAAAGTAATGTAGTTATGTAAG-T-TGTAAGTTATGTATTATGTAA
30581737 TTTTTTATGT
Statistics
Matches: 203, Mismatches: 21, Indels: 22
0.83 0.09 0.09
Matches are distributed among these distances:
59 99 0.49
60 5 0.02
61 51 0.25
62 47 0.23
63 1 0.00
ACGTcount: A:0.32, C:0.02, G:0.20, T:0.46
Consensus pattern (58 bp):
TAAGTTATCAAAGTAATGTAGTTATGTAAGTTGTAAGTTATGTATTATGTAACTTATG
Found at i:30581544 original size:43 final size:44
Alignment explanation
Indices: 30581422--30581768 Score: 240
Period size: 43 Copynumber: 8.0 Consensus size: 44
30581412 TTAAGTAAAA
*
30581422 TATGTAAGTTATGTACGTGTA--TAAGTTATGTAAGTTATGT-A-T
1 TATGTAAGTTATGTAAGT-TATGTAAG-TATGTAAGTTATGTAAGT
* * * * *
30581464 TAAGTAAGCTATGTAAGTTGTGT-ATTATGTAACTTATGTAAGT
1 TATGTAAGTTATGTAAGTTATGTAAGTATGTAAGTTATGTAAGT
** * *
30581507 TATCAAAGTAATGTATGTTATGTAAGT-TGTAAGTTATGT-A-T
1 TATGTAAGTTATGTAAGTTATGTAAGTATGTAAGTTATGTAAGT
* ** * *
30581548 TATGTAACTTATGTAAGTTATCAAATTAATGTATGTTATGTAAG-
1 TATGTAAGTTATGTAAGTTATGTAAGT-ATGTAAGTTATGTAAGT
*
30581592 T-TGTAAGTTAT-TATGTATTATGTAAGTTATGTAAGTTATGTAAGT
1 TATGTAAGTTATGTAAG--TTATGTAAG-TATGTAAGTTATGTAAGT
* * *
30581637 TATGTAAGTTATGT-A-TTATGTAGGTTATGTAAGTTGTGTAAGA
1 TATGTAAGTTATGTAAGTTATGTAAG-TATGTAAGTTATGTAAGT
* * * * *
30581680 TATTTAAGTTATGTAAGTTTTGT-ATTATGTAAGTTATGTATGC
1 TATGTAAGTTATGTAAGTTATGTAAGTATGTAAGTTATGTAAGT
* * * *
30581723 TATGT-A-TTATGTAATTTTTTATGTTATTATGTAAGTTATGCAAGT
1 TATGTAAGTTATGTAA---GTTATGTAAGTATGTAAGTTATGTAAGT
30581768 T
1 T
30581769 TAAATATAAG
Statistics
Matches: 237, Mismatches: 47, Indels: 39
0.73 0.15 0.12
Matches are distributed among these distances:
41 42 0.18
42 22 0.09
43 106 0.45
44 31 0.13
45 25 0.11
46 10 0.04
47 1 0.00
ACGTcount: A:0.31, C:0.02, G:0.20, T:0.47
Consensus pattern (44 bp):
TATGTAAGTTATGTAAGTTATGTAAGTATGTAAGTTATGTAAGT
Found at i:30581607 original size:19 final size:19
Alignment explanation
Indices: 30581583--30581639 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 19
30581573 TTAATGTATG
30581583 TTATGTAAGT-TGTAAGTTA
1 TTATGT-AGTATGTAAGTTA
*
30581602 TTATGTATTATGTAAGTTA
1 TTATGTAGTATGTAAGTTA
*
30581621 TGTAAGT--TATGTAAGTTA
1 T-TATGTAGTATGTAAGTTA
30581639 T
1 T
30581640 GTAAGTTATG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
18 14 0.41
19 16 0.47
20 4 0.12
ACGTcount: A:0.32, C:0.00, G:0.19, T:0.49
Consensus pattern (19 bp):
TTATGTAGTATGTAAGTTA
Found at i:30581900 original size:13 final size:13
Alignment explanation
Indices: 30581882--30581906 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
30581872 ATATAAGTTT
30581882 ATGTAAGTTATGA
1 ATGTAAGTTATGA
30581895 ATGTAAGTTATG
1 ATGTAAGTTATG
30581907 TATTGTGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.24, T:0.40
Consensus pattern (13 bp):
ATGTAAGTTATGA
Found at i:30581905 original size:22 final size:22
Alignment explanation
Indices: 30581858--30581908 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
30581848 AAGTTATGGA
*
30581858 TTATGTAAGGTAGCATATAAGT
1 TTATGTAAGGTAGAATATAAGT
* *
30581880 TTATGTAAGTTATGAATGTAAG-
1 TTATGTAAGGTA-GAATATAAGT
30581902 TTATGTA
1 TTATGTA
30581909 TTGTGTAAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 18 0.72
23 7 0.28
ACGTcount: A:0.35, C:0.02, G:0.22, T:0.41
Consensus pattern (22 bp):
TTATGTAAGGTAGAATATAAGT
Found at i:30581917 original size:16 final size:16
Alignment explanation
Indices: 30581880--30581958 Score: 74
Period size: 16 Copynumber: 5.0 Consensus size: 16
30581870 GCATATAAGT
30581880 TTATGTAAGTTATG-A
1 TTATGTAAGTTATGTA
30581895 --ATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
* *
30581909 TTGTGTAAGTTATTTAAA
1 TTATGTAAGTTATGT--A
* *
30581927 TTATTTAAGTTGTGTA
1 TTATGTAAGTTATGTA
*
30581943 TTATGTAAGTCATGTA
1 TTATGTAAGTTATGTA
30581959 GGCTATGTGT
Statistics
Matches: 50, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
13 12 0.24
14 1 0.02
16 25 0.50
18 12 0.24
ACGTcount: A:0.32, C:0.01, G:0.19, T:0.48
Consensus pattern (16 bp):
TTATGTAAGTTATGTA
Found at i:30582010 original size:20 final size:22
Alignment explanation
Indices: 30581967--30582037 Score: 85
Period size: 20 Copynumber: 3.3 Consensus size: 22
30581957 TAGGCTATGT
30581967 GTTATGTAAGTTATTATAAGTAA
1 GTTATGTAAGTTA-TATAAGTAA
*
30581990 GTTATGAAAGTTATAT-A-TAA
1 GTTATGTAAGTTATATAAGTAA
**
30582010 GTTATGTAAGTTAT-TGTGTAA
1 GTTATGTAAGTTATATAAGTAA
30582031 GTTATGT
1 GTTATGT
30582038 GTTGTGTAAG
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
19 1 0.02
20 16 0.37
21 11 0.26
22 3 0.07
23 12 0.28
ACGTcount: A:0.35, C:0.00, G:0.20, T:0.45
Consensus pattern (22 bp):
GTTATGTAAGTTATATAAGTAA
Found at i:30584125 original size:8 final size:10
Alignment explanation
Indices: 30584102--30584140 Score: 69
Period size: 10 Copynumber: 3.9 Consensus size: 10
30584092 TAATAACTAT
30584102 ATATATATCC
1 ATATATATCC
*
30584112 ATATATATTC
1 ATATATATCC
30584122 ATATATATCC
1 ATATATATCC
30584132 ATATATATC
1 ATATATATC
30584141 AAAAAATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (10 bp):
ATATATATCC
Found at i:30584127 original size:20 final size:20
Alignment explanation
Indices: 30584102--30584139 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
30584092 TAATAACTAT
30584102 ATATATATCCATATATATTC
1 ATATATATCCATATATATTC
30584122 ATATATATCCATATATAT
1 ATATATATCCATATATAT
30584140 CAAAAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.42, C:0.13, G:0.00, T:0.45
Consensus pattern (20 bp):
ATATATATCCATATATATTC
Found at i:30584149 original size:20 final size:20
Alignment explanation
Indices: 30584106--30584145 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
30584096 AACTATATAT
* *
30584106 ATATCCATATATATTCATAT
1 ATATCCATATATATTCAAAA
30584126 ATATCCATATATA-TCAAAA
1 ATATCCATATATATTCAAAA
30584145 A
1 A
30584146 ATATATCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.38
Consensus pattern (20 bp):
ATATCCATATATATTCAAAA
Found at i:30584463 original size:18 final size:19
Alignment explanation
Indices: 30584423--30584465 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
30584413 AACCCCGACC
*
30584423 AAACCCTTAAAACCTCTCT
1 AAACCCTTAAAACCTCCCT
*
30584442 -AACCCTTAAATCC-CCCT
1 AAACCCTTAAAACCTCCCT
30584459 AAACCCT
1 AAACCCT
30584466 AATTAACCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 3 0.14
18 18 0.86
ACGTcount: A:0.35, C:0.42, G:0.00, T:0.23
Consensus pattern (19 bp):
AAACCCTTAAAACCTCCCT
Found at i:30586278 original size:14 final size:14
Alignment explanation
Indices: 30586259--30586326 Score: 52
Period size: 14 Copynumber: 4.9 Consensus size: 14
30586249 ATGACCGTTG
30586259 AAACCCTAAATCTC
1 AAACCCTAAATCTC
*
30586273 AAACCCTTAAACCTC
1 AAACCC-TAAATCTC
*
30586288 TAACCCCTAAAT-T-
1 -AAACCCTAAATCTC
* *
30586301 -AACCTTAAATCCC
1 AAACCCTAAATCTC
*
30586314 AAACCTTAAATCT
1 AAACCCTAAATCT
30586327 ATACCCCGTA
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
11 8 0.19
14 18 0.43
15 11 0.26
16 5 0.12
ACGTcount: A:0.41, C:0.34, G:0.00, T:0.25
Consensus pattern (14 bp):
AAACCCTAAATCTC
Found at i:30586897 original size:41 final size:41
Alignment explanation
Indices: 30586811--30587090 Score: 307
Period size: 41 Copynumber: 6.8 Consensus size: 41
30586801 TTTTGTTACT
** * * *
30586811 ATTAGCGGCGCTTC-GGCAAAAACGCTGCTAAAGG-TAAATGC
1 ATTAGCGGCGC-TCAGATAAAAACGCCGCTAAAGGCCAGA-GC
* * * * *
30586852 ATTAGCGGCGCTTAGCTACAAACACCGCTAAAGGCCAGAGA
1 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGGCCAGAGC
* * *
30586893 ATTAGTGGCGCTCAGATAAAAACGCCACTAAAGATCC-GAGC
1 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAG-GCCAGAGC
* * * *
30586934 ATTAGCGACGCTTAGATAAAAAAGCCGCTAAAGGCCAGAGG
1 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGGCCAGAGC
*
30586975 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGATCC-GAGC
1 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAG-GCCAGAGC
* *
30587016 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGGCCAGAGG
1 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGGCCAGAGC
*
30587057 ATTAGCAGCGCTCAGATAAAAACGCCGCTAAAGG
1 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGG
30587091 TTTAAAAAAT
Statistics
Matches: 199, Mismatches: 34, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
40 5 0.03
41 188 0.94
42 6 0.03
ACGTcount: A:0.35, C:0.24, G:0.25, T:0.16
Consensus pattern (41 bp):
ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGGCCAGAGC
Found at i:30586948 original size:82 final size:81
Alignment explanation
Indices: 30586850--30587089 Score: 381
Period size: 82 Copynumber: 2.9 Consensus size: 81
30586840 AAAGGTAAAT
* * *
30586850 GCATTAGCGGCGCTTAGCTACAAACACCGCTAAAGGCCAGAGAATTAGTGGCGCTCAGATAAAAA
1 GCATTAGCGGCGCTTAGATA-AAACACCGCTAAAGGCCAGAGGATTAGCGGCGCTCAGATAAAAA
*
30586915 CGCCACTAAAGATCCGA
65 CGCCGCTAAAGATCCGA
* *
30586932 GCATTAGCGACGCTTAGATAAAAAAGCCGCTAAAGGCCAGAGGATTAGCGGCGCTCAGATAAAAA
1 GCATTAGCGGCGCTTAGATAAAACA-CCGCTAAAGGCCAGAGGATTAGCGGCGCTCAGATAAAAA
30586997 CGCCGCTAAAGATCCGA
65 CGCCGCTAAAGATCCGA
* *
30587014 GCATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGGCCAGAGGATTAGCAGCGCTCAGATAAAAA
1 GCATTAGCGGCGCTTAGAT-AAAACACCGCTAAAGGCCAGAGGATTAGCGGCGCTCAGATAAAAA
30587079 CGCCGCTAAAG
65 CGCCGCTAAAG
30587090 GTTTAAAAAA
Statistics
Matches: 146, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
81 4 0.03
82 138 0.95
83 4 0.03
ACGTcount: A:0.36, C:0.24, G:0.25, T:0.15
Consensus pattern (81 bp):
GCATTAGCGGCGCTTAGATAAAACACCGCTAAAGGCCAGAGGATTAGCGGCGCTCAGATAAAAAC
GCCGCTAAAGATCCGA
Found at i:30587220 original size:40 final size:40
Alignment explanation
Indices: 30587169--30587244 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
30587159 AATTCCTATT
*
30587169 TTTAGCGGCGCTTCTGG-GAAATCGCCGCTGATGCTCTACC
1 TTTAGCGGCGCTT-TGGCGAAATCGCCGCTAATGCTCTACC
*
30587209 TTTAGCGGCGCTTTGGCTAAATCGCCGCTAATGCTC
1 TTTAGCGGCGCTTTGGCGAAATCGCCGCTAATGCTC
30587245 GATTTTTTGT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
39 3 0.09
40 30 0.91
ACGTcount: A:0.16, C:0.29, G:0.26, T:0.29
Consensus pattern (40 bp):
TTTAGCGGCGCTTTGGCGAAATCGCCGCTAATGCTCTACC
Found at i:30587259 original size:40 final size:39
Alignment explanation
Indices: 30587147--30587262 Score: 117
Period size: 40 Copynumber: 2.9 Consensus size: 39
30587137 GCGCTTTATA
* * *
30587147 TAAAACGCCGTTAATTC-CTATTTTTAGCGGCGCTTCTGG
1 TAAATCGCCGCTAATGCTCTATTTTTAGCGGCGCTT-TGG
* * **
30587186 GAAATCGCCGCTGATGCTCTACCTTTAGCGGCGCTTTGG
1 TAAATCGCCGCTAATGCTCTATTTTTAGCGGCGCTTTGG
* * *
30587225 CTAAATCGCCGCTAATGCTCGATTTTTTGTGGCGCTTT
1 -TAAATCGCCGCTAATGCTCTATTTTTAGCGGCGCTTT
30587263 TGTTCCAAAC
Statistics
Matches: 61, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
39 15 0.25
40 46 0.75
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.34
Consensus pattern (39 bp):
TAAATCGCCGCTAATGCTCTATTTTTAGCGGCGCTTTGG
Found at i:30590344 original size:17 final size:18
Alignment explanation
Indices: 30590322--30590361 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
30590312 TGTAATCATC
30590322 ATAATT-TTTATTAAAT-T
1 ATAATTATTT-TTAAATAT
30590339 ATAATTATTTTTAAATAT
1 ATAATTATTTTTAAATAT
30590357 ATAAT
1 ATAAT
30590362 CATCACACCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATAATTATTTTTAAATAT
Found at i:30590509 original size:87 final size:88
Alignment explanation
Indices: 30590404--30590575 Score: 222
Period size: 87 Copynumber: 2.0 Consensus size: 88
30590394 AACTAAAAAA
* * * * * * * *
30590404 TTTAAATGTTAATTTAGTAATAAGATGAAAAATATAGGGTATTTTTGTTGGTTCAA-ATCTTTTC
1 TTTAAATGTCAACTTAGTAATAAGATGAAAAATAAAGAGTATTCTCGTCGATTCAAGAT-TTTTC
30590468 TAAACTCATG-TTTTATAATTAAT
65 TAAACTCATGATTTTATAATTAAT
* *
30590491 TTTAAATGTCAACTTAGTAATATGATGAAAAATAAAGAGTATTCTCGTCGATTCAAGTATTTTTT
1 TTTAAATGTCAACTTAGTAATAAGATGAAAAATAAAGAGTATTCTCGTCGATTCAAG-ATTTTTC
30590556 TAAACTCATGATTTTATAAT
65 TAAACTCATGATTTTATAAT
30590576 ATATATTATA
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
87 47 0.65
88 14 0.19
89 11 0.15
ACGTcount: A:0.37, C:0.08, G:0.12, T:0.44
Consensus pattern (88 bp):
TTTAAATGTCAACTTAGTAATAAGATGAAAAATAAAGAGTATTCTCGTCGATTCAAGATTTTTCT
AAACTCATGATTTTATAATTAAT
Found at i:30593022 original size:13 final size:13
Alignment explanation
Indices: 30592969--30593024 Score: 51
Period size: 13 Copynumber: 4.3 Consensus size: 13
30592959 TTGCAAAAGC
*
30592969 TTTACTTAATTTT
1 TTTACATAATTTT
* *
30592982 TATATATAATTTT
1 TTTACATAATTTT
* *
30592995 TTATAAAT-ATATT
1 TT-TACATAATTTT
30593008 TTTACATAATTTT
1 TTTACATAATTTT
30593021 TTTA
1 TTTA
30593025 AGAAAAATCA
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
12 4 0.12
13 25 0.76
14 4 0.12
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (13 bp):
TTTACATAATTTT
Found at i:30600725 original size:73 final size:71
Alignment explanation
Indices: 30600583--30600739 Score: 183
Period size: 73 Copynumber: 2.2 Consensus size: 71
30600573 TGCTTCTGTG
* * ** * *
30600583 AAAACGCTGC-AAAAAATAATCAAAACGCATCGTTTTGATTTGAGATTTAGTGGCATTAGCGGCG
1 AAAACGCTGCAAAAAAATAACCAAAACGCATCGTTTT-ATTTGAGATATAGTACCATTAACGGCA
30600647 CTTACACA
65 CTTACA-A
* * *
30600655 AAAACGCCGCAAAAAAGATAACCAAAACGCATCGTTTT-TCTTGAGCTATAGTACCGTTAACGGC
1 AAAACGCTGCAAAAAA-ATAACCAAAACGCATCGTTTTAT-TTGAGATATAGTACCATTAACGGC
30600719 ACTTACAA
64 ACTTACAA
30600727 AAAACGCTGCAAA
1 AAAACGCTGCAAA
30600740 TAGTCGAGAA
Statistics
Matches: 72, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
72 23 0.32
73 29 0.40
74 20 0.28
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.23
Consensus pattern (71 bp):
AAAACGCTGCAAAAAAATAACCAAAACGCATCGTTTTATTTGAGATATAGTACCATTAACGGCAC
TTACAA
Found at i:30601322 original size:14 final size:14
Alignment explanation
Indices: 30601277--30601323 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
30601267 TTAGGGTTAC
30601277 GGTTT-AGAGTTTAG
1 GGTTTGAGA-TTTAG
*
30601291 GGTTTGAGATGTAG
1 GGTTTGAGATTTAG
* *
30601305 GGTTTGGGATTTAT
1 GGTTTGAGATTTAG
30601319 GGTTT
1 GGTTT
30601324 AAGGTTTATG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 25 0.89
15 3 0.11
ACGTcount: A:0.17, C:0.00, G:0.38, T:0.45
Consensus pattern (14 bp):
GGTTTGAGATTTAG
Found at i:30601404 original size:7 final size:7
Alignment explanation
Indices: 30601372--30601445 Score: 53
Period size: 7 Copynumber: 10.4 Consensus size: 7
30601362 GGTGGTTGGT
*
30601372 GTTTGTG
1 GTTTATG
*
30601379 GTTTACAG
1 GTTTA-TG
30601387 GTTTAAT-
1 GTTT-ATG
30601394 GTTTATG
1 GTTTATG
*
30601401 GTTTAGG
1 GTTTATG
30601408 GTTTA-G
1 GTTTATG
30601414 AGTTTATG
1 -GTTTATG
30601422 GTTTATG
1 GTTTATG
* *
30601429 ATTTAGG
1 GTTTATG
*
30601436 GTTTAAG
1 GTTTATG
30601443 GTT
1 GTT
30601446 AGGGTTTAGA
Statistics
Matches: 54, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
6 3 0.06
7 44 0.81
8 6 0.11
9 1 0.02
ACGTcount: A:0.19, C:0.01, G:0.30, T:0.50
Consensus pattern (7 bp):
GTTTATG
Found at i:30601412 original size:21 final size:21
Alignment explanation
Indices: 30601371--30601453 Score: 71
Period size: 21 Copynumber: 4.0 Consensus size: 21
30601361 TGGTGGTTGG
* *
30601371 TGTTTGTGGTTTACAGGTTTAA
1 TGTTTATGGTTTA-GGGTTTAA
30601393 TGTTTATGGTTTAGGGTTTAGA
1 TGTTTATGGTTTAGGGTTTA-A
* * *
30601415 -GTTTATGGTTTATGATTTAG
1 TGTTTATGGTTTAGGGTTTAA
* *
30601435 GGTTTAAGG-TTAGGGTTTA
1 TGTTTATGGTTTAGGGTTTA
30601454 GAGTTTAGAG
Statistics
Matches: 51, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
20 8 0.16
21 30 0.59
22 13 0.25
ACGTcount: A:0.19, C:0.01, G:0.30, T:0.49
Consensus pattern (21 bp):
TGTTTATGGTTTAGGGTTTAA
Found at i:30601454 original size:7 final size:7
Alignment explanation
Indices: 30601394--30601467 Score: 69
Period size: 7 Copynumber: 10.7 Consensus size: 7
30601384 CAGGTTTAAT
*
30601394 GTTTATG
1 GTTTAGG
30601401 GTTTAGG
1 GTTTAGG
*
30601408 GTTTAGA
1 GTTTAGG
*
30601415 GTTTATG
1 GTTTAGG
*
30601422 GTTTATG
1 GTTTAGG
*
30601429 ATTTAGG
1 GTTTAGG
*
30601436 GTTTAAG
1 GTTTAGG
30601443 G-TTAGG
1 GTTTAGG
*
30601449 GTTTAGA
1 GTTTAGG
*
30601456 GTTTAGA
1 GTTTAGG
30601463 GTTTA
1 GTTTA
30601468 ATTTAAGATT
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
6 5 0.09
7 51 0.91
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.47
Consensus pattern (7 bp):
GTTTAGG
Found at i:30601728 original size:27 final size:25
Alignment explanation
Indices: 30601682--30601736 Score: 60
Period size: 27 Copynumber: 2.1 Consensus size: 25
30601672 CATCATTTTT
30601682 TATTTATATATTGCATATATACATAAA
1 TATTTATATATTGCATATATA-A-AAA
30601709 TATTTATATTTATT-CA-ATATAAAAA
1 TATTTATA--TATTGCATATATAAAAA
30601734 TAT
1 TAT
30601737 AAAAATATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
25 6 0.23
26 1 0.04
27 13 0.50
28 2 0.08
29 4 0.15
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.47
Consensus pattern (25 bp):
TATTTATATATTGCATATATAAAAA
Found at i:30602369 original size:148 final size:146
Alignment explanation
Indices: 30601935--30602409 Score: 492
Period size: 148 Copynumber: 3.2 Consensus size: 146
30601925 TCTATGTACT
* * * * *
30601935 TAGTGGCGTTTTATGCCAAGACGCCAGAAAATTT-ACATAATTGTGTGGGAAACGACGTCG-TTT
1 TAGTGGCGTTTTATACCAAAACGCCAG-AAATTTGTCATAATTGTTTGGGAAACGACATCGTTTT
** * * ** * *
30601998 CTGCGGTTATTTAGTGGCGCACAAT-TATAAACTCCGCGAATGGGTTCATTTAATCAT-GAATAC
65 C-G-GGTTATTTAGTGGCGC-TTATGTATAAACGCCGCAAATTTGTTCGTTTAGTCATGGAATAC
* *
30602061 GTCATTGTTTTTCCATGTTCT
127 GTCATCGTTTTTCCATGTT-A
* * * * * *
30602082 TAGTGGCATTTTATACCAAAACACCAGAAATTTGTCCTAATTGTTTTGGAAACGACTTCATTTCT
1 TAGTGGCGTTTTATACCAAAACGCCAGAAATTTGTCATAATTGTTTGGGAAACGACATCGTTT-T
** * *
30602147 AC-AATTAATTTAGTGGCGCTTATGTATAAACGCCGCAAAGTTCTTCGTTTAGTCATGGAATACG
65 -CGGGTT-ATTTAGTGGCGCTTATGTATAAACGCCGCAAATTTGTTCGTTTAGTCATGGAATACG
* * *
30602211 TCGTCATTTTTCCAGGTTA
128 TCATCGTTTTTCCATGTTA
*
30602230 GTAGTGGCGTTTTATACCAAAACGCCAGAAATTTGTCATAACTGTTTGGGAAACGACATCGTTTT
1 -TAGTGGCGTTTTATACCAAAACGCCAGAAATTTGTCATAATTGTTTGGGAAACGACATCGTTTT
** * *
30602295 CGGGGTTATTTAGTGGCGCTTATGTATAAACGGTGCTAATTTGTTCGTTTAGTCATGGAAAACGT
65 C-GGGTTATTTAGTGGCGCTTATGTATAAACGCCGCAAATTTGTTCGTTTAGTCATGGAATACGT
*
30602360 CATCGTTTTTCAATGTTA
129 CATCGTTTTTCCATGTTA
* *
30602378 TGAGTGGCGTTTTATGCCAAAACGCAAGAAAT
1 T-AGTGGCGTTTTATACCAAAACGCCAGAAAT
30602410 AATGCTATCT
Statistics
Matches: 269, Mismatches: 48, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
146 6 0.02
147 49 0.18
148 133 0.49
149 80 0.30
150 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (146 bp):
TAGTGGCGTTTTATACCAAAACGCCAGAAATTTGTCATAATTGTTTGGGAAACGACATCGTTTTC
GGGTTATTTAGTGGCGCTTATGTATAAACGCCGCAAATTTGTTCGTTTAGTCATGGAATACGTCA
TCGTTTTTCCATGTTA
Found at i:30602698 original size:6 final size:6
Alignment explanation
Indices: 30602687--30602722 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
30602677 CTCTATTGCA
* *
30602687 TCACCG TCACCG CCACCG TCACTG TCACCG TCACCG
1 TCACCG TCACCG TCACCG TCACCG TCACCG TCACCG
30602723 CCGCTCTCCG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.17, C:0.50, G:0.17, T:0.17
Consensus pattern (6 bp):
TCACCG
Found at i:30602971 original size:14 final size:14
Alignment explanation
Indices: 30602930--30602965 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
30602920 GTAGGGTTGA
30602930 GTTATTCGAATTTT
1 GTTATTCGAATTTT
*
30602944 GTTATTCAAATTTT
1 GTTATTCGAATTTT
30602958 GTTATTCG
1 GTTATTCG
30602966 GGTTTTTGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.22, C:0.08, G:0.14, T:0.56
Consensus pattern (14 bp):
GTTATTCGAATTTT
Found at i:30603036 original size:20 final size:21
Alignment explanation
Indices: 30602992--30603043 Score: 70
Period size: 23 Copynumber: 2.4 Consensus size: 21
30602982 CTGTTGGATT
*
30602992 TTGACATAGATTTTGTTATTCGG
1 TTGACATAGATTTTG-T-CTCGG
30603015 TTGACATAGATTTTG-CTCGG
1 TTGACATAGATTTTGTCTCGG
30603035 TTGACATAG
1 TTGACATAG
30603044 CTTCTAATTG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 13 0.46
23 15 0.54
ACGTcount: A:0.23, C:0.12, G:0.23, T:0.42
Consensus pattern (21 bp):
TTGACATAGATTTTGTCTCGG
Found at i:30604006 original size:9 final size:9
Alignment explanation
Indices: 30603990--30604095 Score: 82
Period size: 9 Copynumber: 12.4 Consensus size: 9
30603980 CATAATAAAC
30603990 AACTTACAT
1 AACTTACAT
*
30603999 AGCTTACAT
1 AACTTACAT
30604008 AA--TACAT
1 AACTTACAT
30604015 AACTTACAT
1 AACTTACAT
*
30604024 AACTTATAT
1 AACTTACAT
30604033 AA--TACAT
1 AACTTACAT
30604040 AACTTACAT
1 AACTTACAT
* *
30604049 AATTTACCT
1 AACTTACAT
30604058 AA--TACAT
1 AACTTACAT
* *
30604065 AA-ATATAT
1 AACTTACAT
* *
30604073 ATCATATCAT
1 AACTTA-CAT
30604083 AACTTACAT
1 AACTTACAT
30604092 AACT
1 AACT
30604096 CATTTATAGT
Statistics
Matches: 78, Mismatches: 12, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
7 19 0.24
8 5 0.06
9 48 0.62
10 6 0.08
ACGTcount: A:0.46, C:0.18, G:0.01, T:0.35
Consensus pattern (9 bp):
AACTTACAT
Found at i:30604013 original size:16 final size:16
Alignment explanation
Indices: 30603994--30604093 Score: 69
Period size: 16 Copynumber: 6.0 Consensus size: 16
30603984 ATAAACAACT
*
30603994 TACATAGCTTACATAA
1 TACATAACTTACATAA
30604010 TACATAACTTACATAA
1 TACATAACTTACATAA
*
30604026 CTTATATAA--TACATAA
1 --TACATAACTTACATAA
* *
30604042 CTTACATAATTTACCTAA
1 --TACATAACTTACATAA
* * *
30604060 TACATAAATATATATCA
1 TACATAACT-TACATAA
30604077 TATCATAACTTACATAA
1 TA-CATAACTTACATAA
30604094 CTCATTTATA
Statistics
Matches: 67, Mismatches: 11, Indels: 11
0.75 0.12 0.12
Matches are distributed among these distances:
16 38 0.57
17 11 0.16
18 18 0.27
ACGTcount: A:0.47, C:0.17, G:0.01, T:0.35
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:30604018 original size:25 final size:25
Alignment explanation
Indices: 30603979--30604066 Score: 122
Period size: 25 Copynumber: 3.5 Consensus size: 25
30603969 GGTTTTTCTG
* * *
30603979 ACATAATAAACAACTTACATAGCTT
1 ACATAATACATAACTTACATAACTT
30604004 ACATAATACATAACTTACATAACTT
1 ACATAATACATAACTTACATAACTT
* *
30604029 ATATAATACATAACTTACATAATTT
1 ACATAATACATAACTTACATAACTT
*
30604054 ACCTAATACATAA
1 ACATAATACATAA
30604067 ATATATATCA
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 56 1.00
ACGTcount: A:0.49, C:0.18, G:0.01, T:0.32
Consensus pattern (25 bp):
ACATAATACATAACTTACATAACTT
Found at i:30609973 original size:43 final size:43
Alignment explanation
Indices: 30609921--30610125 Score: 331
Period size: 43 Copynumber: 4.8 Consensus size: 43
30609911 TTTATAAAAA
* *
30609921 AAGCGCCGCTAAAAGTCATGTTCTATAGCGGCGTTTCTGGGAG
1 AAGCGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGGAG
*
30609964 AAGCACCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGGAG
1 AAGCGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGGAG
30610007 AAGCGCCGCT-AAAGTCATGATCTATAGCGGCGTTTGTGGGAG
1 AAGCGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGGAG
*
30610049 AAGCGCCGCTAAAAGTCATGACCTATAGCGGCGTTTGTGGGAG
1 AAGCGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGGAG
* * * *
30610092 AAGCGCTGCTAAAGGTCATGACCTTTAGCGGCGT
1 AAGCGCCGCTAAAAGTCATGATCTATAGCGGCGT
30610126 GTATTTCTAA
Statistics
Matches: 153, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
42 42 0.27
43 111 0.73
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.23
Consensus pattern (43 bp):
AAGCGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGGAG
Found at i:30610051 original size:85 final size:85
Alignment explanation
Indices: 30609921--30610125 Score: 329
Period size: 85 Copynumber: 2.4 Consensus size: 85
30609911 TTTATAAAAA
* *
30609921 AAGCGCCGCTAAAAGTCATGTTCTATAGCGGCGTTTCTGGGAGAAGCACCGCTAAAAGTCATGAT
1 AAGCGCCGCT-AAAGTCATGATCTATAGCGGCGTTTCTGGGAGAAGCACCGCTAAAAGTCATGAC
30609986 CTATAGCGGCGTTTGTGGGAG
65 CTATAGCGGCGTTTGTGGGAG
* *
30610007 AAGCGCCGCTAAAGTCATGATCTATAGCGGCGTTTGTGGGAGAAGCGCCGCTAAAAGTCATGACC
1 AAGCGCCGCTAAAGTCATGATCTATAGCGGCGTTTCTGGGAGAAGCACCGCTAAAAGTCATGACC
30610072 TATAGCGGCGTTTGTGGGAG
66 TATAGCGGCGTTTGTGGGAG
* * *
30610092 AAGCGCTGCTAAAGGTCATGACCTTTAGCGGCGT
1 AAGCGCCGCTAAA-GTCATGATCTATAGCGGCGT
30610126 GTATTTCTAA
Statistics
Matches: 111, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
85 83 0.75
86 28 0.25
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.23
Consensus pattern (85 bp):
AAGCGCCGCTAAAGTCATGATCTATAGCGGCGTTTCTGGGAGAAGCACCGCTAAAAGTCATGACC
TATAGCGGCGTTTGTGGGAG
Found at i:30611313 original size:26 final size:26
Alignment explanation
Indices: 30611284--30611335 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
30611274 AATTTTTTTA
* *
30611284 CAAACCAAACCTAAAACAAACCCAAT
1 CAAAACAAACCCAAAACAAACCCAAT
*
30611310 CAAAATAAACCCAAAACAAACCCAAT
1 CAAAACAAACCCAAAACAAACCCAAT
30611336 TTAATTACAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.60, C:0.33, G:0.00, T:0.08
Consensus pattern (26 bp):
CAAAACAAACCCAAAACAAACCCAAT
Found at i:30612585 original size:19 final size:18
Alignment explanation
Indices: 30612561--30612596 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
30612551 TGTATTTTTT
30612561 TATATTTTCATTTCATTTC
1 TATATTTTCATTT-ATTTC
*
30612580 TATATTTTTATTTATTT
1 TATATTTTCATTTATTT
30612597 ATTAATATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.22, C:0.08, G:0.00, T:0.69
Consensus pattern (18 bp):
TATATTTTCATTTATTTC
Found at i:30612763 original size:29 final size:28
Alignment explanation
Indices: 30612708--30612781 Score: 71
Period size: 29 Copynumber: 2.6 Consensus size: 28
30612698 TTTTTATTTA
*
30612708 CTTATTATTATATATATAATTGGTTTG-T
1 CTTATTATTAT-TATTTAATTGGTTTGCT
**
30612736 CTTTATTATTATTATTTAACTTTTTTTGCT
1 C-TTATTATTATTATTTAA-TTGGTTTGCT
*
30612766 CGTATTATT-TTATTTA
1 CTTATTATTATTATTTA
30612782 CATTATCGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
28 14 0.36
29 23 0.59
30 2 0.05
ACGTcount: A:0.24, C:0.07, G:0.07, T:0.62
Consensus pattern (28 bp):
CTTATTATTATTATTTAATTGGTTTGCT
Found at i:30614149 original size:11 final size:11
Alignment explanation
Indices: 30614133--30614159 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
30614123 TGATATTACT
30614133 TAAAATAAAAA
1 TAAAATAAAAA
30614144 TAAAATAAAAA
1 TAAAATAAAAA
30614155 TAAAA
1 TAAAA
30614160 GATAATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (11 bp):
TAAAATAAAAA
Found at i:30615427 original size:43 final size:43
Alignment explanation
Indices: 30615359--30615662 Score: 385
Period size: 43 Copynumber: 7.1 Consensus size: 43
30615349 TCTTTTAAAG
* *
30615359 CGCCGCTATAGACTATGGTCTTTAGCGGCGCTTAGACAAAAAA
1 CGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGACAAAAAA
* * * *
30615402 CACCGCGATAGACCATGGTCTTTAGCGGCGCTTATACAAAAAA
1 CGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGACAAAAAA
* * * *
30615445 CGCCACTACAGATCGTGGTCTTTAGCGGCGCTTATACAAAAAA
1 CGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGACAAAAAA
* * *
30615488 CGCCACTATAGATCGTGGTCTTTAGCGGCGCTTATACAAAAAA
1 CGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGACAAAAAA
* * * *
30615531 CGCCACTATAGATCGTGGTCTTTAGCGGCGTTTGGAC-AAAAA
1 CGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGACAAAAAA
* * *
30615573 TGCCACTATAGACCATGGTCTTCAGCGGCGCTTGGACAAAAAA
1 CGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGACAAAAAA
* * **
30615616 CGCCACTATAGACGATGGTCTTTAGCGGCGTTTACCCAAAAAA
1 CGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGACAAAAAA
30615659 CGCC
1 CGCC
30615663 GCTAATTTTG
Statistics
Matches: 234, Mismatches: 26, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
42 37 0.16
43 197 0.84
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (43 bp):
CGCCACTATAGACCATGGTCTTTAGCGGCGCTTAGACAAAAAA
Found at i:30616037 original size:21 final size:21
Alignment explanation
Indices: 30615999--30616038 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
30615989 CTCTAATTCC
* *
30615999 CTCGCTGCAGCCTTTGCTTCT
1 CTCGCTGCAGCATCTGCTTCT
*
30616020 CTCGCTGCTGCATCTGCTT
1 CTCGCTGCAGCATCTGCTT
30616039 TAAGCTGATG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.05, C:0.38, G:0.20, T:0.38
Consensus pattern (21 bp):
CTCGCTGCAGCATCTGCTTCT
Found at i:30616104 original size:87 final size:87
Alignment explanation
Indices: 30615999--30616191 Score: 257
Period size: 87 Copynumber: 2.2 Consensus size: 87
30615989 CTCTAATTCC
* *
30615999 CTCGCTGCAGCCTTTGCTTCTCTCGCTG-CTGCATCTGCTTTAAGCTG-ATGCTGGAGTTCTTCA
1 CTCGCTGCTGCCTCTGCTTCTCTCGCTGTC-GCATCTGCTTTAAGCTGTA-GCTGGAGTTCTTCA
30616062 TA-CTTTCGTTGAACCTCAGCTTCT
64 TATCTTT-GTTGAACCTCAGCTTCT
* * *
30616086 CTCGCTGCTGCCTCTGCTTCTCTCGTTGTCGTATCTGCTTTAAGTTGTAGCTGGAGTTCTTCATA
1 CTCGCTGCTGCCTCTGCTTCTCTCGCTGTCGCATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATA
*
30616151 TCTTTTTTGAACCTCAGCTTCT
66 TCTTTGTTGAACCTCAGCTTCT
* * *
30616173 CTCGATGTTGCCTCCGCTT
1 CTCGCTGCTGCCTCTGCTT
30616192 TAAGTTGTGT
Statistics
Matches: 94, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
87 88 0.94
88 6 0.06
ACGTcount: A:0.11, C:0.29, G:0.19, T:0.40
Consensus pattern (87 bp):
CTCGCTGCTGCCTCTGCTTCTCTCGCTGTCGCATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATA
TCTTTGTTGAACCTCAGCTTCT
Found at i:30623586 original size:19 final size:18
Alignment explanation
Indices: 30623545--30623587 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
30623535 GTCTCTTTTT
30623545 TGCATTCATTTCATGCATC
1 TGCATTCATTTCATGCA-C
30623564 TGCATTGCATTTCATTGCA-
1 TGCATT-CATTTCA-TGCAC
30623583 TGCAT
1 TGCAT
30623588 CAAATTTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 11 0.50
20 7 0.32
21 4 0.18
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (18 bp):
TGCATTCATTTCATGCAC
Found at i:30625641 original size:6 final size:6
Alignment explanation
Indices: 30625632--30625682 Score: 75
Period size: 6 Copynumber: 8.0 Consensus size: 6
30625622 CAAAATAGAA
30625632 AAAAAG AAAAAG AAGAAACAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
1 AAAAAG AAAAAG -A-AAA-AG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
30625683 GAGAGGTCAA
Statistics
Matches: 42, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
6 32 0.76
7 4 0.10
8 4 0.10
9 2 0.05
ACGTcount: A:0.80, C:0.02, G:0.18, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:30627146 original size:27 final size:27
Alignment explanation
Indices: 30627115--30627291 Score: 196
Period size: 27 Copynumber: 6.5 Consensus size: 27
30627105 TAAATTGTAC
30627115 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* **
30627142 TGCACTAAGTGTGCGAAATGA--ATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
30627167 GATGCACTAAGTGTGCGAATTGACCATGC
1 -A-GCACTAAGTGTGCGATTTGACTATGT
*
30627196 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
30627224 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
30627251 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
30627278 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
30627292 AGACTCAATA
Statistics
Matches: 128, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
25 4 0.03
27 98 0.77
28 23 0.18
29 3 0.02
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:30627256 original size:82 final size:81
Alignment explanation
Indices: 30627116--30627271 Score: 226
Period size: 82 Copynumber: 1.9 Consensus size: 81
30627106 AAATTGTACA
* *
30627116 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATGTGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAACGTGATGCACTAAGTGT
30627181 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
**
30627197 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGT-A-GCACTAAG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGA--ACGTGATGCACTAAG
*
30627260 TGTGCGAGTTGA
63 TGTGCGAATTGA
30627272 TTATATAGCA
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
81 15 0.22
82 48 0.72
83 1 0.01
84 3 0.04
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAACGTGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:30627283 original size:82 final size:81
Alignment explanation
Indices: 30627112--30627291 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
30627102 GATTAAATTG
* *
30627112 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATGTGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAACGTGATGCACTAA
30627177 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * **
30627193 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGT-A-GCAC
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGA--ACGTGATGCAC
* **
30627256 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
30627275 TATAGCACTGAGTGTGC
1 TACAGCACTAAGTGTGC
30627292 AGACTCAATA
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
81 17 0.20
82 62 0.75
83 1 0.01
84 3 0.04
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAACGTGATGCACTAA
GTGTGCGAATTGACCA
Found at i:30630913 original size:50 final size:49
Alignment explanation
Indices: 30630859--30631616 Score: 580
Period size: 50 Copynumber: 15.3 Consensus size: 49
30630849 GCAGTGGGAT
* * *
30630859 AGATTGAAGCTACAACGGCGAATCTT-CTTTCCCTGACATGGCAATTAAGA
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCCT-ACATTGCAATTAA-A
* * * * * *
30630909 AGATTGAAGCTACAATAGCGGATCTTACTTT-CCTAGCGTTACAGTGGAAC
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCCTA-CATTGCAAT-TAAA
* *
30630959 AGATTGAAGCTACAACAGCAGATCTTAC-TTCCCTGACATTACAATTAAGA
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCCT-ACATTGCAATTAA-A
* * * *
30631009 AGATTGAAGCTACAACAGCGGATCTTACTTT-CCTAGCGTTGCAGTGGAAC
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCCTA-CATTGCAAT-TAAA
*
30631059 AGATTGAAGCTACAACAGCAGATCTTAC-TTCCCTGACATTGCAATTAAGA
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCCT-ACATTGCAATTAA-A
* * * *
30631109 AGATTGAAGCTACAACAGCGGATCTTACTTT-CCTAGCGTTGCAGTGGAAC
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCCTA-CATTGCAAT-TAAA
* * *
30631159 CGATTGAAGTTACAACAGCAGATCTTAC-TTCCCTGACATTGCAATTCAAA
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCCT-ACATTGCAATT-AAA
* * ** * * *
30631209 ATATTGAAGCTACAACAGCGGATCTTA-TTTTCCTAGTGTTGCAGTGGAAC
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCCTA-CATTGCAAT-TAAA
** * * *
30631259 AGATTGAAGCTACAACAGTAGATCTTGC-TTCCC--C--GGCAGTTAAAA
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCCTACATTGCAATT-AAA
* * * * * *
30631304 AGATTGAAGCTACAACAGCTGATCTTACTTT-CCTAGCGTTCCAGTGGAAC
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCCTA-CATTGCAAT-TAAA
*
30631354 AGATTGAAGCTACAACAGCAGATCTTAC-TTCCCTGACATTGCAATTAAGA
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCCT-ACATTGCAATTAA-A
* * * * *
30631404 AGATTGAAGCTACAACCGCGGATCTTACTTT-CCTAGCGTTGCAGTGGAAT
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCCTA-CATTGCAAT-TAAA
* * * *
30631454 AGATTGAAGCTGCAACAGTGGATCTTACTTCCCCGACATTGCAATTAAGA
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCCTACATTGCAATTAA-A
* *** *
30631504 AGATTGAAGCTACAACAGCGGATCTTACTTT-CCTAGCGTTGCAGCGGAAT
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCCTA-CATTGCA-ATTAAA
* * * * * *
30631554 AGATTGAAGCTACGACAGTGAATCTCA-TTTCCCCGACATTGCAAGTAAA
1 AGATTGAAGCTACAACAGCGGATCTTACTTT-CCCTACATTGCAATTAAA
30631603 TAGATTGAAGCTAC
1 -AGATTGAAGCTAC
30631617 GATGGCGAAT
Statistics
Matches: 562, Mismatches: 103, Indels: 86
0.75 0.14 0.11
Matches are distributed among these distances:
45 34 0.06
46 2 0.00
48 1 0.00
49 30 0.05
50 465 0.83
51 30 0.05
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.27
Consensus pattern (49 bp):
AGATTGAAGCTACAACAGCGGATCTTACTTTCCCTACATTGCAATTAAA
Found at i:30631633 original size:100 final size:100
Alignment explanation
Indices: 30630797--30631616 Score: 1160
Period size: 100 Copynumber: 8.2 Consensus size: 100
30630787 TAACCATAGT
* * * * * *
30630797 TTGCAATTTAA-AAGATTGAAGCTACAACGGCGAACCTTACTTTCC-AGGCGGTGCAGTGGGATA
1 TTGCAA-TTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTA-GCGTTGCAGTGGAACA
*
30630860 GATTGAAGCTACAACGGC-GAATCTT-CTTTCCCTGACA
64 GATTGAAGCTACAACAGCAG-ATCTTAC-TTCCCTGACA
* * *
30630897 TGGCAATTAAGAAGATTGAAGCTACAATAGCGGATCTTACTTTCCTAGCGTTACAGTGGAACAGA
1 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
30630962 TTGAAGCTACAACAGCAGATCTTACTTCCCTGACA
66 TTGAAGCTACAACAGCAGATCTTACTTCCCTGACA
*
30630997 TTACAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
1 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
30631062 TTGAAGCTACAACAGCAGATCTTACTTCCCTGACA
66 TTGAAGCTACAACAGCAGATCTTACTTCCCTGACA
*
30631097 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACCGA
1 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
*
30631162 TTGAAGTTACAACAGCAGATCTTACTTCCCTGACA
66 TTGAAGCTACAACAGCAGATCTTACTTCCCTGACA
* * *
30631197 TTGCAATTCAA-AATATTGAAGCTACAACAGCGGATCTTATTTTCCTAGTGTTGCAGTGGAACAG
1 TTGCAATT-AAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAG
* *
30631261 ATTGAAGCTACAACAGTAGATCTTGCTTCCC---C-
65 ATTGAAGCTACAACAGCAGATCTTACTTCCCTGACA
* * * * *
30631293 -GGCAGTTAAAAAGATTGAAGCTACAACAGCTGATCTTACTTTCCTAGCGTTCCAGTGGAACAGA
1 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
30631357 TTGAAGCTACAACAGCAGATCTTACTTCCCTGACA
66 TTGAAGCTACAACAGCAGATCTTACTTCCCTGACA
* *
30631392 TTGCAATTAAGAAGATTGAAGCTACAACCGCGGATCTTACTTTCCTAGCGTTGCAGTGGAATAGA
1 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
* ** *
30631457 TTGAAGCTGCAACAGTGGATCTTACTTCCCCGACA
66 TTGAAGCTACAACAGCAGATCTTACTTCCCTGACA
* *
30631492 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGCGGAATAGA
1 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
* * * * *
30631557 TTGAAGCTACGACAG-TGAATCTCATTTCCCCGACA
66 TTGAAGCTACAACAGCAG-ATCTTACTTCCCTGACA
*
30631592 TTGCAAGTAA-ATAGATTGAAGCTAC
1 TTGCAATTAAGA-AGATTGAAGCTAC
30631617 GATGGCGAAT
Statistics
Matches: 655, Mismatches: 52, Indels: 26
0.89 0.07 0.04
Matches are distributed among these distances:
94 2 0.00
95 82 0.13
97 1 0.00
98 1 0.00
99 6 0.01
100 558 0.85
101 5 0.01
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (100 bp):
TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
TTGAAGCTACAACAGCAGATCTTACTTCCCTGACA
Found at i:30632060 original size:46 final size:45
Alignment explanation
Indices: 30631868--30632718 Score: 363
Period size: 44 Copynumber: 19.5 Consensus size: 45
30631858 TCACAAATCC
* * * * *
30631868 TATCTCCTTGAGATTACAGCGGAGCAGATCGAAG-A-CACTATCC
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGAATCACGATCT
* * * * *
30631911 TATCTCCCTGAAGTTACAGTGGAGCGGAT-TAA-AATAAAGGATCT
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGAAT-CACGATCT
* * ** * * * *
30631955 TATCTCTCTGAAGTTACAGCAGAGTAGATC---GTATTA-GGTCT
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGAATCACGATCT
* *
30631996 TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCA-GATCT
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGAA--TCACGATCT
* * * *
30632042 TATCTCCTTGAGGTTACAGTGGAGCAGATTGAAG--CCATGATCT
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGAATCACGATCT
* * * * *
30632085 TATCTCCCTGAGATTACAGCGGTGCAGATCGAAG-A-CACTATCC
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGAATCACGATCT
* * * * *
30632128 TATCTCCCTGAAGTTACAGTGGAGCGGAT-TAA-AATAAAGGATCT
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGAAT-CACGATCT
* * ** * * *
30632172 TATCTCTCTGAAGTTACAGCAGAGTAGATC---GCATCA-GGTCT
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGAATCACGATCT
* *
30632213 TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCA-GATCT
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGAA--TCACGATCT
* * *
30632259 TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAG--CCAGAGATCT
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGAATCA-CGATCT
* * * *
30632303 TATCTCCCTGAGATTATAGTGGAGCAGATTGAAG-A-CAGAGATCT
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGAATCA-CGATCT
* * *
30632347 TATCTTCCTGAAGTTACAGTGGAGCAGA-CGAAAGAAATCA--ATCC
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCG-AAG-AATCACGATCT
* * * * *
30632391 TATCTCCCTGAAGTTACAGTAGAGCATA-CAAAAGAAATCA--ATCC
1 TATCTCCCTGAGGTTACAGTGGAGCAGATC-GAAG-AATCACGATCT
** * * * * * * *
30632435 TATCTCTTTGAAGTTGCAGTAGAGCGGAT-TAA-AACCACAAATCT
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGAATCAC-GATCT
* * ** *
30632479 TATCTCTCTGAAGTTACAGCAGAGCAGATC---GCATC-C-AGTCT
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGAATCACGA-TCT
* * ** * * *
30632520 TATCTCCCTGAAGTTGCAGTGGAGTGGGT-TAA-AACCACAGATCT
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGAATCAC-GATCT
* * * * * * *
30632564 TATCTCTCTGAAGTTACAGTAGAGTAGATC---GCAT-AAGGTCT
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGAATCACGATCT
* *
30632605 TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCA-GATCT
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGAA--TCACGATCT
* * * *
30632651 TATCTCCCTGAAGTTACAGTGGAGCAGA-CGAAAAAT-ACCAATCG
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGAATCA-CGATCT
* * *
30632695 TGTCTCCCTGAAGTTGCAGTGGAG
1 TATCTCCCTGAGGTTACAGTGGAG
30632719 TGGATGAAAA
Statistics
Matches: 630, Mismatches: 125, Indels: 105
0.73 0.15 0.12
Matches are distributed among these distances:
40 1 0.00
41 117 0.19
42 17 0.03
43 99 0.16
44 280 0.44
45 7 0.01
46 106 0.17
47 3 0.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27
Consensus pattern (45 bp):
TATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGAATCACGATCT
Found at i:30632201 original size:87 final size:85
Alignment explanation
Indices: 30632035--30632415 Score: 193
Period size: 87 Copynumber: 4.4 Consensus size: 85
30632025 CGAAGAATTT
* * * * * *** *
30632035 CAGATCTTATCTCCTTGAGGTTACAGTGGAGCAGATT-GAAGCCATGATCTTATCTCCCTGAGAT
1 CAGATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCCCTGAGAT
* *
30632099 TACAGCGGTGCAGATCGAAGA
66 TACAGCAGAGCAGATCGAA-A
* *
30632120 CACTATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGA-A
1 CA-GATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCCCTGAGA
* * *
30632184 GTTACAGCAGAGTAGATCGCAT
65 -TTACAGCAGAGCAGATCGAAA
* * * ** ** **
30632206 CAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCA-GATCTTATCTCCCTGA
1 CAGATCCTATCTCCCTGAAGTTACAGTGGAGCGGA-TTAA-AA-TAAAGGATCTTATCTCCCTGA
* ** *
30632270 GGTTACAGTGGAGCAGATTGAAGCCA
63 GATTACAGCAGAGCAGATCGAA---A
* * * * * * * *
30632296 GAGATCTTATCTCCCTG-AGATTATAGTGGAGCAGATT-GAAGACAGAGATCTTATCTTCCTGA-
1 CAGATCCTATCTCCCTGAAG-TTACAGTGGAGCGGATTAAAATAAAG-GATCTTATCTCCCTGAG
**
30632358 AGTTACAGTGGAGCAGA-CGAAAGAAA
64 A-TTACAGCAGAGCAGATC----GAAA
*
30632384 TCA-ATCCTATCTCCCTGAAGTTACAGTAGAGC
1 -CAGATCCTATCTCCCTGAAGTTACAGTGGAGC
30632416 ATACAAAAGA
Statistics
Matches: 225, Mismatches: 51, Indels: 37
0.72 0.16 0.12
Matches are distributed among these distances:
85 29 0.13
86 37 0.16
87 68 0.30
88 56 0.25
89 4 0.02
90 28 0.12
91 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (85 bp):
CAGATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCCCTGAGAT
TACAGCAGAGCAGATCGAAA
Found at i:30632243 original size:217 final size:218
Alignment explanation
Indices: 30631868--30632371 Score: 875
Period size: 217 Copynumber: 2.3 Consensus size: 218
30631858 TCACAAATCC
*
30631868 TATCTCCTTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAGTGG
1 TATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAGTGG
* *
30631933 AGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGTATTAGGTCTTA
66 AGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTA
*
30631998 TCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCTTGAGGTTACAGTG
131 TCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTG
*
30632063 GAGCAGATTGAAGCCA-TGATCT
196 GAGCAGATTGAAGCCAGAGATCT
*
30632085 TATCTCCCTGAGATTACAGCGGTGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAGTGG
1 TATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAGTGG
30632150 AGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTA
66 AGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTA
30632215 TCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTG
131 TCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTG
30632280 GAGCAGATTGAAGCCAGAGATCT
196 GAGCAGATTGAAGCCAGAGATCT
* * * ** * *
30632303 TATCTCCCTGAGATTATAGTGGAGCAGATTGAAGACAGAGATCTTATCTTCCTGAAGTTACAGTG
1 TATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACA-CTATCCTATCTCCCTGAAGTTACAGTG
30632368 GAGC
65 GAGC
30632372 AGACGAAAGA
Statistics
Matches: 271, Mismatches: 14, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
217 206 0.76
218 38 0.14
219 27 0.10
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (218 bp):
TATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAGTGG
AGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTA
TCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTG
GAGCAGATTGAAGCCAGAGATCT
Found at i:30632553 original size:85 final size:85
Alignment explanation
Indices: 30632443--30632629 Score: 277
Period size: 85 Copynumber: 2.2 Consensus size: 85
30632433 CCTATCTCTT
* *
30632443 TGAAGTTGCAGTAGAGCGGATTAAAACCACAAATCTTATCTCTCTGAAGTTACAGCAGAGCAGAT
1 TGAAGTTGCAGTGGAGTGGATTAAAACCACAAATCTTATCTCTCTGAAGTTACAGCAGAGCAGAT
*
30632508 CGCATCCA-GTCTTATCTCCC
66 CGCAT-AAGGTCTTATCTCCC
* * * *
30632528 TGAAGTTGCAGTGGAGTGGGTTAAAACCACAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGAT
1 TGAAGTTGCAGTGGAGTGGATTAAAACCACAAATCTTATCTCTCTGAAGTTACAGCAGAGCAGAT
30632593 CGCATAAGGTCTTATCTCCC
66 CGCATAAGGTCTTATCTCCC
* *
30632613 TGAGGTTACAGTGGAGT
1 TGAAGTTGCAGTGGAGT
30632630 AGACCGAAGA
Statistics
Matches: 92, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
84 1 0.01
85 91 0.99
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (85 bp):
TGAAGTTGCAGTGGAGTGGATTAAAACCACAAATCTTATCTCTCTGAAGTTACAGCAGAGCAGAT
CGCATAAGGTCTTATCTCCC
Found at i:30632750 original size:175 final size:173
Alignment explanation
Indices: 30632522--30632857 Score: 394
Period size: 175 Copynumber: 1.9 Consensus size: 173
30632512 TCCAGTCTTA
* * *
30632522 TCTCCCTGAAGTTGCAGTGGAGTGGGTTAAAACCACAGATCTTATCTCTCTGAAGTTACAGTAGA
1 TCTCCCTGAAGTTGCAGTGGAGTGGATGAAAACCACAGATCATATCTCTCTGAAGTTACAGTAG-
** * * *
30632587 GTAG-ATCGCAT-AAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATC
65 GTAGAATCGCATCAA-ACCTTATCTCCCTGAAGTCACAGTGGAGCAGACCGAAG-ATTTCAGATC
30632650 TTATCTCCCTGAAG-TTACAGTGGAGCAGACGAAAAATACCAATCGTG
128 TTATCTCCCTG-AGTTTACAGTGGAGCAGAC-AAAAATACCAATCGTG
** * *
30632697 TCTCCCTGAAGTTGCAGTGGAGTGGATGAAAATGA-TGAATCATATAC-CTCTGAAGTTGCAGTA
1 TCTCCCTGAAGTTGCAGTGGAGTGGATGAAAACCACAG-ATCATAT-CTCTCTGAAGTTACAGTA
* * * ** ***
30632760 GGTCGAATTGGATCAAACCTTATCTCCCTGAAGTCGTAGTGGAGCAGGTTGAAGATTTCAGATCT
64 GGTAGAATCGCATCAAACCTTATCTCCCTGAAGTCACAGTGGAGCAGACCGAAGATTTCAGATCT
30632825 TATCTCCCTGAGTTTACAGTGGAGCAGACAAAA
129 TATCTCCCTGAGTTTACAGTGGAGCAGACAAAA
30632858 GAAACCGATC
Statistics
Matches: 136, Mismatches: 20, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
173 6 0.04
174 41 0.30
175 86 0.63
176 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.27
Consensus pattern (173 bp):
TCTCCCTGAAGTTGCAGTGGAGTGGATGAAAACCACAGATCATATCTCTCTGAAGTTACAGTAGG
TAGAATCGCATCAAACCTTATCTCCCTGAAGTCACAGTGGAGCAGACCGAAGATTTCAGATCTTA
TCTCCCTGAGTTTACAGTGGAGCAGACAAAAATACCAATCGTG
Found at i:30637091 original size:9 final size:9
Alignment explanation
Indices: 30637052--30637391 Score: 247
Period size: 9 Copynumber: 39.8 Consensus size: 9
30637042 TATGTATTAA
*
30637052 GTAAATTAT
1 GTAAGTTAT
30637061 GTAAGTTAT
1 GTAAGTTAT
*
30637070 GTATGTGTA-
1 GTAAGT-TAT
30637079 -TAAGTTAT
1 GTAAGTTAT
*
30637087 GTAAGTCAT
1 GTAAGTTAT
*
30637096 GT-A-TTAA
1 GTAAGTTAT
*
30637103 GTAAGCTAT
1 GTAAGTTAT
*
30637112 GTAAGTTGT
1 GTAAGTTAT
30637121 GT-A-TTAT
1 GTAAGTTAT
*
30637128 GTAACTTAT
1 GTAAGTTAT
30637137 GTAAGTTAT
1 GTAAGTTAT
*** *
30637146 ACCAGTAAT
1 GTAAGTTAT
*
30637155 GTATGTTAT
1 GTAAGTTAT
30637164 GTAAG-T-T
1 GTAAGTTAT
30637171 GTAAGTTAT
1 GTAAGTTAT
30637180 GT-A-TTAT
1 GTAAGTTAT
*
30637187 GTAACTTAT
1 GTAAGTTAT
30637196 GTAAGTTAT
1 GTAAGTTAT
* *
30637205 -CAAATTAAT
1 GTAAGTT-AT
*
30637214 GTATGTTAT
1 GTAAGTTAT
30637223 GTAAG-T-T
1 GTAAGTTAT
30637230 GTAAGTTAT
1 GTAAGTTAT
*
30637239 -TATGTATTAT
1 GTAAG--TTAT
30637249 GTAAGTTAT
1 GTAAGTTAT
30637258 GTAAGTTAT
1 GTAAGTTAT
30637267 GT-A-TTAT
1 GTAAGTTAT
*
30637274 GTAGGTTAT
1 GTAAGTTAT
30637283 GTAAGTTAT
1 GTAAGTTAT
*
30637292 GTAAGTTAC
1 GTAAGTTAT
*
30637301 GT-A-TTTT
1 GTAAGTTAT
*
30637308 GTAGGTTAT
1 GTAAGTTAT
*
30637317 GTAAGTTGT
1 GTAAGTTAT
*
30637326 GTAAGATAT
1 GTAAGTTAT
*
30637335 TTAAGTTAT
1 GTAAGTTAT
*
30637344 GTAAGTTTT
1 GTAAGTTAT
30637353 GT-A-TTAT
1 GTAAGTTAT
30637360 GTAAGTTAT
1 GTAAGTTAT
* *
30637369 GTATGCTAT
1 GTAAGTTAT
30637378 GT-A-TTAT
1 GTAAGTTAT
30637385 GTAAGTT
1 GTAAGTT
30637392 TATATAAAAA
Statistics
Matches: 254, Mismatches: 51, Indels: 52
0.71 0.14 0.15
Matches are distributed among these distances:
7 49 0.19
8 26 0.10
9 167 0.66
10 9 0.04
11 3 0.01
ACGTcount: A:0.31, C:0.03, G:0.20, T:0.46
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:30637098 original size:51 final size:50
Alignment explanation
Indices: 30637043--30637142 Score: 137
Period size: 51 Copynumber: 2.0 Consensus size: 50
30637033 TACATAATTT
* * *
30637043 ATGTATTAAGTAAATTATGTAAGTTATGTATGTGTATAAGTTATGTAAGTC
1 ATGTATTAAGTAAACTATGTAAGTTATGTAT-TATATAACTTATGTAAGTC
* * *
30637094 ATGTATTAAGTAAGCTATGTAAGTTGTGTATTATGTAACTTATGTAAGT
1 ATGTATTAAGTAAACTATGTAAGTTATGTATTATATAACTTATGTAAGT
30637143 TATACCAGTA
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
50 15 0.35
51 28 0.65
ACGTcount: A:0.34, C:0.03, G:0.20, T:0.43
Consensus pattern (50 bp):
ATGTATTAAGTAAACTATGTAAGTTATGTATTATATAACTTATGTAAGTC
Found at i:30637157 original size:59 final size:58
Alignment explanation
Indices: 30637079--30637323 Score: 228
Period size: 59 Copynumber: 4.1 Consensus size: 58
30637069 TGTATGTGTA
** * * *
30637079 TAAGTTATGTAAGTCATGTA-TTAAGTAAGCTATGTAAGTTGTGTATTATGTAACTTATG
1 TAAGTTATCAAAGTAATGTAGTTATGTAAG-T-TGTAAGTTATGTATTATGTAACTTATG
*
30637138 TAAGTTAT-ACCAGTAATGTATGTTATGTAAGTTGTAAGTTATGTATTATGTAACTTATG
1 TAAGTTATCA-AAGTAATGTA-GTTATGTAAGTTGTAAGTTATGTATTATGTAACTTATG
* *
30637197 TAAGTTATCAAATTAATGTATGTTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTATG
1 TAAGTTATCAAAGTAATGTA-GTTATGTAAGTTGTAAG---TTATGTATTATGTAACTTATG
** * * * **
30637259 TAAGTTAT-GTA-TTATGTAGGTTATGTAAGTTATGTAAGTTACGTATTTTGTAGGTTATG
1 TAAGTTATCAAAGTAATGTA-GTTATGTAAG-T-TGTAAGTTATGTATTATGTAACTTATG
30637318 TAAGTT
1 TAAGTT
30637324 GTGTAAGATA
Statistics
Matches: 162, Mismatches: 15, Indels: 18
0.83 0.08 0.09
Matches are distributed among these distances:
59 100 0.62
60 18 0.11
61 10 0.06
62 34 0.21
ACGTcount: A:0.31, C:0.03, G:0.20, T:0.45
Consensus pattern (58 bp):
TAAGTTATCAAAGTAATGTAGTTATGTAAGTTGTAAGTTATGTATTATGTAACTTATG
Found at i:30637243 original size:19 final size:19
Alignment explanation
Indices: 30637219--30637257 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
30637209 TTAATGTATG
30637219 TTATGTAAGT-TGTAAGTTA
1 TTATGT-AGTATGTAAGTTA
*
30637238 TTATGTATTATGTAAGTTA
1 TTATGTAGTATGTAAGTTA
30637257 T
1 T
30637258 GTAAGTTATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 2 0.11
19 16 0.89
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (19 bp):
TTATGTAGTATGTAAGTTA
Found at i:30637389 original size:25 final size:26
Alignment explanation
Indices: 30637041--30637391 Score: 243
Period size: 25 Copynumber: 13.7 Consensus size: 26
30637031 GTTACATAAT
* *
30637041 TTATGTA-TTAAGTAAATTATGTAAG
1 TTATGTAGTTATGTAAGTTATGTAAG
30637066 TTATGTATGTGTA--TAAGTTATGTAAG
1 TTATGTA-GT-TATGTAAGTTATGTAAG
* * *
30637092 TCATGTA-TTAAGTAAGCTATGTAAG
1 TTATGTAGTTATGTAAGTTATGTAAG
* *
30637117 TTGTGTA-TTATGTAACTTATGTAAG
1 TTATGTAGTTATGTAAGTTATGTAAG
** * *
30637142 TTATACCAGTAATGTATGTTATGTAAG
1 TTAT-GTAGTTATGTAAGTTATGTAAG
*
30637169 -T-TGTAAGTTATGT-A-TTATGTAAC
1 TTATGT-AGTTATGTAAGTTATGTAAG
* * *
30637192 TTATGTAAGTTAT-CAAATTAATGTATG
1 TTATGT-AGTTATGTAAGTT-ATGTAAG
*
30637219 TTATGTAAG-T-TGTAAGTTAT-TATG
1 TTATGT-AGTTATGTAAGTTATGTAAG
30637243 TATTATGTAAGTTATGTAAGTTATGT-A-
1 --TTATGT-AGTTATGTAAGTTATGTAAG
30637270 TTATGTAGGTTATGTAAGTTATGTAAG
1 TTATGTA-GTTATGTAAGTTATGTAAG
* * *
30637297 TTACGTA-TTTTGTAGGTTATGTAAG
1 TTATGTAGTTATGTAAGTTATGTAAG
* * *
30637322 TTGTGTAAGATATTTAAGTTATGTAAG
1 TTATGT-AGTTATGTAAGTTATGTAAG
* *
30637349 TTTTGTA-TTATGTAAGTTATGTATG
1 TTATGTAGTTATGTAAGTTATGTAAG
*
30637374 CTATGTA-TTATGTAAGTT
1 TTATGTAGTTATGTAAGTT
30637392 TATATAAAAA
Statistics
Matches: 262, Mismatches: 40, Indels: 48
0.75 0.11 0.14
Matches are distributed among these distances:
23 10 0.04
24 7 0.03
25 137 0.52
26 39 0.15
27 56 0.21
28 12 0.05
29 1 0.00
ACGTcount: A:0.31, C:0.03, G:0.20, T:0.46
Consensus pattern (26 bp):
TTATGTAGTTATGTAAGTTATGTAAG
Found at i:30637454 original size:38 final size:39
Alignment explanation
Indices: 30637361--30637455 Score: 104
Period size: 39 Copynumber: 2.5 Consensus size: 39
30637351 TTGTATTATG
* * * * *
30637361 TAAG-TTATGTATGCTATGTATTATGTAAGTTTATATAA
1 TAAGTTTATGTAAGTTATGTATTATGTAAGGTAACATAA
* * *
30637399 AAATTTTATATAAGTTATGTATTATGTAAGGTAACAT-A
1 TAAGTTTATGTAAGTTATGTATTATGTAAGGTAACATAA
30637437 TAAGTTTATGTAAGTTATG
1 TAAGTTTATGTAAGTTATG
30637456 AATGTAAGTT
Statistics
Matches: 45, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
38 19 0.42
39 26 0.58
ACGTcount: A:0.37, C:0.02, G:0.16, T:0.45
Consensus pattern (39 bp):
TAAGTTTATGTAAGTTATGTATTATGTAAGGTAACATAA
Found at i:30637578 original size:19 final size:20
Alignment explanation
Indices: 30637556--30637602 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
30637546 TTTTTCAAGT
* *
30637556 ATATATAAAATTTTA-ATAA
1 ATATATAAAACTGTATATAA
30637575 ATATATTAAAACTGTATATAA
1 ATATA-TAAAACTGTATATAA
30637596 ATATATA
1 ATATATA
30637603 TATCAAAGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 5 0.21
20 10 0.42
21 9 0.38
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (20 bp):
ATATATAAAACTGTATATAA
Found at i:30639545 original size:11 final size:11
Alignment explanation
Indices: 30639529--30639555 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
30639519 TTACTCAACC
30639529 AGTAATATGAA
1 AGTAATATGAA
30639540 AGTAATATGAA
1 AGTAATATGAA
30639551 AGTAA
1 AGTAA
30639556 ATTAAACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.19, T:0.26
Consensus pattern (11 bp):
AGTAATATGAA
Found at i:30640483 original size:27 final size:27
Alignment explanation
Indices: 30640435--30640486 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
30640425 TCTTACATTT
* *
30640435 AAATAATTAATTACCAATTTATTTAAC
1 AAATAAATAATTACCAACTTATTTAAC
**
30640462 AAATAAATAATTACTTACTTATTTA
1 AAATAAATAATTACCAACTTATTTA
30640487 TTTGTTTATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.42
Consensus pattern (27 bp):
AAATAAATAATTACCAACTTATTTAAC
Found at i:30640569 original size:10 final size:10
Alignment explanation
Indices: 30640554--30640590 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
30640544 TAATAACTAT
30640554 ATATATATCC
1 ATATATATCC
*
30640564 ATATATAT-T
1 ATATATATCC
30640573 A-ATATATCC
1 ATATATATCC
30640582 ATATATATC
1 ATATATATC
30640591 AAAAAATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
8 6 0.26
9 2 0.09
10 15 0.65
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (10 bp):
ATATATATCC
Found at i:30641891 original size:14 final size:14
Alignment explanation
Indices: 30641872--30641939 Score: 52
Period size: 15 Copynumber: 4.9 Consensus size: 14
30641862 ATGACCGTTG
30641872 AAACCCTAAATCTC
1 AAACCCTAAATCTC
*
30641886 AAACCCCTAAACCTC
1 AAA-CCCTAAATCTC
*
30641901 TAACCCCTAAAT-T-
1 -AAACCCTAAATCTC
* *
30641914 -AACCTTAAATCCC
1 AAACCCTAAATCTC
*
30641927 AAACCTTAAATCT
1 AAACCCTAAATCT
30641940 ATACCCCGTA
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
11 8 0.19
14 15 0.36
15 17 0.40
16 2 0.05
ACGTcount: A:0.41, C:0.35, G:0.00, T:0.24
Consensus pattern (14 bp):
AAACCCTAAATCTC
Found at i:30641895 original size:15 final size:15
Alignment explanation
Indices: 30641875--30641912 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
30641865 ACCGTTGAAA
30641875 CCCTAAATCTCAAAC
1 CCCTAAATCTCAAAC
* *
30641890 CCCTAAACCTCTAAC
1 CCCTAAATCTCAAAC
30641905 CCCTAAAT
1 CCCTAAAT
30641913 TAACCTTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.37, C:0.42, G:0.00, T:0.21
Consensus pattern (15 bp):
CCCTAAATCTCAAAC
Found at i:30642482 original size:41 final size:41
Alignment explanation
Indices: 30642432--30642528 Score: 115
Period size: 41 Copynumber: 2.4 Consensus size: 41
30642422 GGTAAATGCT
* *
30642432 TTAGCGGCGCTTAGATACAAACGGCGCTAAAG-GCCGGAGAA
1 TTAGCGGCGCTTAGATAAAAACGGCACTAAAGAGCC-GAGAA
* * * * *
30642473 TTAGTGGCGCTCAGATAAAAACGTCACTAAAGATCCGAGCA
1 TTAGCGGCGCTTAGATAAAAACGGCACTAAAGAGCCGAGAA
30642514 TTAGCGGCGCTTAGA
1 TTAGCGGCGCTTAGA
30642529 CAAAGAGGTT
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
41 44 0.96
42 2 0.04
ACGTcount: A:0.32, C:0.22, G:0.28, T:0.19
Consensus pattern (41 bp):
TTAGCGGCGCTTAGATAAAAACGGCACTAAAGAGCCGAGAA
Found at i:30642600 original size:41 final size:40
Alignment explanation
Indices: 30642538--30642651 Score: 138
Period size: 41 Copynumber: 2.8 Consensus size: 40
30642528 ACAAAGAGGT
* * *
30642538 TTAGCGGCGTTCATATGAAAACGCCGCTAAAGATCGGAGAA
1 TTAGCGGCGCTCA-ATAAAAACGCCGCTAAAGATCCGAGAA
** *
30642579 TTAGCGGCGCTCAGATAAAAACGCCATTAAAGATCCGAGCA
1 TTAGCGGCGCTCA-ATAAAAACGCCGCTAAAGATCCGAGAA
*
30642620 TTAGCGGCGCACTAATAAAAACGCCGCTAAAG
1 TTAGCGGCGCTC-AATAAAAACGCCGCTAAAG
30642652 GTTTAAAAAT
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
41 61 0.98
42 1 0.02
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.18
Consensus pattern (40 bp):
TTAGCGGCGCTCAATAAAAACGCCGCTAAAGATCCGAGAA
Found at i:30642821 original size:40 final size:39
Alignment explanation
Indices: 30642697--30642824 Score: 114
Period size: 40 Copynumber: 3.2 Consensus size: 39
30642687 GGTTTTTTGT
* * *
30642697 GGCGCTTTATATAAAACGCCGCTAAT-TTCTATTTTTAGC
1 GGCGCTTT-TCTAAATCGCCGCTAATGCTCTATTTTTAGC
* ** **
30642736 GGCGCTTCTTCGAAATCGCCGCGGATGCTCTACCTTTAGC
1 GGCGCTT-TTCTAAATCGCCGCTAATGCTCTATTTTTAGC
* * * *
30642776 CGCGCTTTGTCTAAATCGCCGCTAATGCTCGATTTTTTGT
1 GGCGCTTT-TCTAAATCGCCGCTAATGCTCTATTTTTAGC
30642816 GGCGCTTTT
1 GGCGCTTTT
30642825 GTTCCAAACC
Statistics
Matches: 68, Mismatches: 18, Indels: 6
0.74 0.20 0.07
Matches are distributed among these distances:
39 21 0.31
40 47 0.69
ACGTcount: A:0.17, C:0.26, G:0.21, T:0.36
Consensus pattern (39 bp):
GGCGCTTTTCTAAATCGCCGCTAATGCTCTATTTTTAGC
Found at i:30648495 original size:43 final size:43
Alignment explanation
Indices: 30648430--30648569 Score: 208
Period size: 43 Copynumber: 3.3 Consensus size: 43
30648420 TTATAGAAAT
*
30648430 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTCCCGC
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTCCCAC
* * *
30648473 AAATGCCGCTAAAGGCCATGTTCTTTAGCGGTGCTTTTCCCAC
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTCCCAC
* * * *
30648516 AAACGACGTTAAAGGTTATGTTCTTTAGCGGCACTTTTCCCAC
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTCCCAC
30648559 AAACGCCGCTA
1 AAACGCCGCTA
30648570 TTGTTTGGTG
Statistics
Matches: 84, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 84 1.00
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.29
Consensus pattern (43 bp):
AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTCCCAC
Found at i:30648597 original size:44 final size:43
Alignment explanation
Indices: 30648430--30648597 Score: 165
Period size: 43 Copynumber: 3.9 Consensus size: 43
30648420 TTATAGAAAT
* * * *
30648430 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTCCCGC
1 AAACGACGCTAAAGGTTATGTCCTTTAGCGGCGCTTTTCCCAC
* * ** * *
30648473 AAATGCCGCTAAAGGCCATGTTCTTTAGCGGTGCTTTTCCCAC
1 AAACGACGCTAAAGGTTATGTCCTTTAGCGGCGCTTTTCCCAC
* * *
30648516 AAACGACGTTAAAGGTTATGTTCTTTAGCGGCACTTTTCCCAC
1 AAACGACGCTAAAGGTTATGTCCTTTAGCGGCGCTTTTCCCAC
* ** * *
30648559 AAACGCCGCTATTGTTTGGTGTCCTTTAGCGGCGCTTTT
1 AAACGACGCTAAAGGTT-ATGTCCTTTAGCGGCGCTTTT
30648598 TTTAAAAACG
Statistics
Matches: 105, Mismatches: 19, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
43 87 0.83
44 18 0.17
ACGTcount: A:0.20, C:0.26, G:0.22, T:0.32
Consensus pattern (43 bp):
AAACGACGCTAAAGGTTATGTCCTTTAGCGGCGCTTTTCCCAC
Found at i:30648978 original size:26 final size:27
Alignment explanation
Indices: 30648952--30649004 Score: 88
Period size: 28 Copynumber: 1.9 Consensus size: 27
30648942 TTACAACAAT
*
30648952 AACAGCACATATAAAGTAGTTGAAATAA
1 AACAGCACATATAAAATAGTTGAAAT-A
30648980 AACAGCACATATAAAATAGTTGAAA
1 AACAGCACATATAAAATAGTTGAAA
30649005 AGTTATGTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.55, C:0.11, G:0.13, T:0.21
Consensus pattern (27 bp):
AACAGCACATATAAAATAGTTGAAATA
Found at i:30649127 original size:25 final size:26
Alignment explanation
Indices: 30649076--30649137 Score: 90
Period size: 25 Copynumber: 2.4 Consensus size: 26
30649066 TTTTACAATG
* *
30649076 ATTAAGTTATGTAAATAATATGAGTT
1 ATTAAGTTATGCAAATAATATAAGTT
*
30649102 ATTAAGTTATGCATAT-ATATAAGTT
1 ATTAAGTTATGCAAATAATATAAGTT
30649127 ATTAAGTTATG
1 ATTAAGTTATG
30649138 TAAGTTATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
25 19 0.58
26 14 0.42
ACGTcount: A:0.40, C:0.02, G:0.15, T:0.44
Consensus pattern (26 bp):
ATTAAGTTATGCAAATAATATAAGTT
Found at i:30649141 original size:17 final size:17
Alignment explanation
Indices: 30649076--30649147 Score: 58
Period size: 17 Copynumber: 4.2 Consensus size: 17
30649066 TTTTACAATG
* *
30649076 ATTAAGTTATGTAAATA
1 ATTAAGTTATGTAAGTT
*
30649093 ATATGAGTTAT-TAAGTT
1 AT-TAAGTTATGTAAGTT
** *
30649110 ATGCA-TATATATAAGTT
1 ATTAAGT-TATGTAAGTT
30649127 ATTAAGTTATGTAAGTT
1 ATTAAGTTATGTAAGTT
30649144 ATTA
1 ATTA
30649148 TGTGAGTTAT
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
15 1 0.02
16 4 0.09
17 30 0.70
18 8 0.19
ACGTcount: A:0.40, C:0.01, G:0.14, T:0.44
Consensus pattern (17 bp):
ATTAAGTTATGTAAGTT
Found at i:30649262 original size:17 final size:17
Alignment explanation
Indices: 30649240--30649299 Score: 52
Period size: 17 Copynumber: 3.5 Consensus size: 17
30649230 ATATATTTTA
30649240 AAATTATTAAGTTAAGT
1 AAATTATTAAGTTAAGT
*
30649257 AAATTATGTGAGTT--GTT
1 AAATTAT-TAAGTTAAG-T
**
30649274 AGGTTATTAAGTTAAGT
1 AAATTATTAAGTTAAGT
*
30649291 AAGTTATTA
1 AAATTATTA
30649300 TGTGAATTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
16 6 0.18
17 22 0.65
18 6 0.18
ACGTcount: A:0.38, C:0.00, G:0.18, T:0.43
Consensus pattern (17 bp):
AAATTATTAAGTTAAGT
Found at i:30649283 original size:34 final size:36
Alignment explanation
Indices: 30649243--30649325 Score: 107
Period size: 34 Copynumber: 2.3 Consensus size: 36
30649233 TATTTTAAAA
* * *
30649243 TTATTAAGTTAAGTAA-ATTATGTGAGTTGT-TAGG
1 TTATTAAGTTAAGTAATATTATGTGAATTATATAAG
30649277 TTATTAAGTTAAGTAAGTTATTATGTGAATTATATAAG
1 TTATTAAGTTAAGTAA--TATTATGTGAATTATATAAG
30649315 TTATTAAGTTA
1 TTATTAAGTTA
30649326 TATGGTATGA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
34 16 0.38
37 12 0.29
38 14 0.33
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (36 bp):
TTATTAAGTTAAGTAATATTATGTGAATTATATAAG
Found at i:30649326 original size:46 final size:46
Alignment explanation
Indices: 30649258--30649421 Score: 134
Period size: 46 Copynumber: 3.5 Consensus size: 46
30649248 AAGTTAAGTA
* * * *
30649258 AATTATGTGAGTTGTTAGGTTATTAAGTTAAGTAAGTTATTATGTG
1 AATTATATAAGTTATTAAGTTATTAAGTTAAGTAAGTTATTATGTG
* * *
30649304 AATTATATAAGTTATTAAGTTA-TATGGTATGACA-TATATATGTATTATGTA
1 AATTATATAAGTTATTAAGTTATTA-AGT-T-A-AGTA-A-GT-TATTATGTG
* * * * * *
30649355 AATTATGTGAGTTGTTATGTTGTTAAGTTATGTAAGTTATTATGTG
1 AATTATATAAGTTATTAAGTTATTAAGTTAAGTAAGTTATTATGTG
30649401 AATTATATAAGTTATTAAGTT
1 AATTATATAAGTTATTAAGTT
30649422 GGACATTTTT
Statistics
Matches: 89, Mismatches: 20, Indels: 18
0.70 0.16 0.14
Matches are distributed among these distances:
45 2 0.02
46 45 0.51
47 2 0.02
48 4 0.04
49 5 0.06
50 2 0.02
51 27 0.30
52 2 0.02
ACGTcount: A:0.34, C:0.01, G:0.19, T:0.47
Consensus pattern (46 bp):
AATTATATAAGTTATTAAGTTATTAAGTTAAGTAAGTTATTATGTG
Found at i:30649706 original size:8 final size:8
Alignment explanation
Indices: 30649690--30649720 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
30649680 ATTCGGGCCT
*
30649690 ACAATGCA
1 ACAAGGCA
30649698 ACAAGGCA
1 ACAAGGCA
30649706 ACAAGGCA
1 ACAAGGCA
30649714 ACAAGGC
1 ACAAGGC
30649721 CTTCATGAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.48, C:0.26, G:0.23, T:0.03
Consensus pattern (8 bp):
ACAAGGCA
Found at i:30652249 original size:16 final size:16
Alignment explanation
Indices: 30652228--30652258 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
30652218 GGCGTGTTTG
*
30652228 GCGACGGTTGATGAGT
1 GCGACGGTAGATGAGT
30652244 GCGACGGTAGATGAG
1 GCGACGGTAGATGAG
30652259 CTACGGCAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.13, G:0.45, T:0.19
Consensus pattern (16 bp):
GCGACGGTAGATGAGT
Found at i:30652787 original size:199 final size:199
Alignment explanation
Indices: 30652447--30653135 Score: 1004
Period size: 199 Copynumber: 3.5 Consensus size: 199
30652437 AACATTCAGC
* * * * * *
30652447 GTTTTTTAGTAGCGCCACTAATGACCAGGAAAAACGACACCGTTTTATGAAAATTGAGAATAGAA
1 GTTTTTTAGTAGCGCCACTAATGCCCAGGCAAAACGACACCGTTTTACGAAAACTGAGAACAAAA
* * * * * *
30652512 CTTTGTGGCGTTTTTTCCTTAGCGCCGCTAATGACCACATTTAACTGCGTTTTTACCTTAGCGCC
66 CCTTGCGGCGTTTTTTCCTTAGCGCCGCTAATGACCACCTTTAGCGGCGTTTTTCCCTTAGCGCC
* *
30652577 GCAAAACCCATTAAATTCGCAGCCAAAAATTTCACCATTTTGTCTTCATTATTAAGAATATTTTG
131 GCAAAACCCATTAAATTCGCAGCCAAAAACTACACCATTTTGTCTTCATTATTAAGAATATTTTG
*
30652642 AGGT
196 CGGT
* * **
30652646 GTTTTTTAGTAGCGCCACTAATGCCCAAGCAAAACGACACTGTTTTGTGAAAACTGAGAACAAAA
1 GTTTTTTAGTAGCGCCACTAATGCCCAGGCAAAACGACACCGTTTTACGAAAACTGAGAACAAAA
* * * * *
30652711 CCTTGCAGCGTTTTTTCCTTAGCGCCGCTAATGACAACCCTTAGCGGCATTTTTCCCTTAGTGCC
66 CCTTGCGGCGTTTTTTCCTTAGCGCCGCTAATGACCACCTTTAGCGGCGTTTTTCCCTTAGCGCC
30652776 GCAAAACCCATTAAATTCGCAGCCAAAAACTACACCATTTTGTCTTCATTATTAAGAATATTTTG
131 GCAAAACCCATTAAATTCGCAGCCAAAAACTACACCATTTTGTCTTCATTATTAAGAATATTTTG
30652841 CGGT
196 CGGT
* * * **
30652845 GTTTTTTACTAGCACCACTAATGCCCGGGCAAAACGACACCGTTTTACGAAAACTGAGAACTGAA
1 GTTTTTTAGTAGCGCCACTAATGCCCAGGCAAAACGACACCGTTTTACGAAAACTGAGAACAAAA
* *
30652910 CTTTGCGGCGTTTTTTCCTTAGCACCGCTAATGACCACCTTTAGCGGCGTTTTTCCCTTAGCGCC
66 CCTTGCGGCGTTTTTTCCTTAGCGCCGCTAATGACCACCTTTAGCGGCGTTTTTCCCTTAGCGCC
*
30652975 GCAAAACCCATTAAATTCGCAGCCAAAAACTGCACCATTTTGTCTTCATTATTAAGAATATTTTG
131 GCAAAACCCATTAAATTCGCAGCCAAAAACTACACCATTTTGTCTTCATTATTAAGAATATTTTG
* *
30653040 CTGC
196 CGGT
* * * * *
30653044 ATTTTTTAGAAGCGCCACTAAT-CCCAGGCAAAATGACACCGTTTTGCGAAAACTGATAACAGAA
1 GTTTTTTAGTAGCGCCACTAATGCCCAGGCAAAACGACACCGTTTTACGAAAACTGAGAACA-AA
30653108 A-CTTGCGGCGTTTTTTCCTTAGCGCCGC
65 ACCTTGCGGCGTTTTTTCCTTAGCGCCGC
30653136 AAAGTCCATT
Statistics
Matches: 436, Mismatches: 53, Indels: 3
0.89 0.11 0.01
Matches are distributed among these distances:
198 59 0.14
199 377 0.86
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (199 bp):
GTTTTTTAGTAGCGCCACTAATGCCCAGGCAAAACGACACCGTTTTACGAAAACTGAGAACAAAA
CCTTGCGGCGTTTTTTCCTTAGCGCCGCTAATGACCACCTTTAGCGGCGTTTTTCCCTTAGCGCC
GCAAAACCCATTAAATTCGCAGCCAAAAACTACACCATTTTGTCTTCATTATTAAGAATATTTTG
CGGT
Found at i:30653352 original size:47 final size:48
Alignment explanation
Indices: 30653284--30653382 Score: 128
Period size: 47 Copynumber: 2.1 Consensus size: 48
30653274 CATAGTTTTG
* * * **
30653284 TTTAGGTAATATTTATAAAAATTAGATAAAATTATTAATTTTAGT-TT
1 TTTAAGTAATATTTAAAAAAATTAGATAAAAATAAAAATTTTAGTGTT
* *
30653331 TTTAAGTAGTATTTAAAAAAATTAGGTAAAAATAAAAATTTTAGTGTT
1 TTTAAGTAATATTTAAAAAAATTAGATAAAAATAAAAATTTTAGTGTT
30653379 TTTA
1 TTTA
30653383 TTTCTTTTTT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
47 38 0.86
48 6 0.14
ACGTcount: A:0.44, C:0.00, G:0.10, T:0.45
Consensus pattern (48 bp):
TTTAAGTAATATTTAAAAAAATTAGATAAAAATAAAAATTTTAGTGTT
Found at i:30653404 original size:12 final size:12
Alignment explanation
Indices: 30653378--30653413 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
30653368 ATTTTAGTGT
*
30653378 TTTTATTTCTT-
1 TTTTATTTTTTA
30653389 TTTTATTTTTTA
1 TTTTATTTTTTA
30653401 TTTTATTTTTTA
1 TTTTATTTTTTA
30653413 T
1 T
30653414 AATTTTTACA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 10 0.43
12 13 0.57
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (12 bp):
TTTTATTTTTTA
Found at i:30653409 original size:19 final size:18
Alignment explanation
Indices: 30653377--30653413 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
30653367 AATTTTAGTG
*
30653377 TTTTTATTTCTTTTTTAT
1 TTTTTATTTATTTTTTAT
30653395 TTTTTATTTTATTTTTTAT
1 TTTTTA-TTTATTTTTTAT
30653414 AATTTTTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.84
Consensus pattern (18 bp):
TTTTTATTTATTTTTTAT
Found at i:30653421 original size:9 final size:9
Alignment explanation
Indices: 30653407--30653455 Score: 73
Period size: 9 Copynumber: 5.4 Consensus size: 9
30653397 TTTATTTTAT
*
30653407 TTTTTATAA
1 TTTTTACAA
30653416 TTTTTACAA
1 TTTTTACAA
30653425 TTTTTTACAA
1 -TTTTTACAA
30653435 -TTTTACAA
1 TTTTTACAA
30653443 TTTTTACAA
1 TTTTTACAA
30653452 TTTT
1 TTTT
30653456 AAATTATTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
8 8 0.22
9 20 0.54
10 9 0.24
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.61
Consensus pattern (9 bp):
TTTTTACAA
Found at i:30653427 original size:19 final size:18
Alignment explanation
Indices: 30653405--30653460 Score: 80
Period size: 17 Copynumber: 3.2 Consensus size: 18
30653395 TTTTTATTTT
*
30653405 ATTTTTTATAATTTTTACA
1 ATTTTTTACAA-TTTTACA
30653424 ATTTTTTACAATTTTACA
1 ATTTTTTACAATTTTACA
30653442 A-TTTTTACAATTTTA-A
1 ATTTTTTACAATTTTACA
30653458 ATT
1 ATT
30653461 ATTATATTCA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
16 2 0.06
17 15 0.43
18 8 0.23
19 10 0.29
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (18 bp):
ATTTTTTACAATTTTACA
Found at i:30653428 original size:8 final size:8
Alignment explanation
Indices: 30653417--30653460 Score: 54
Period size: 8 Copynumber: 5.2 Consensus size: 8
30653407 TTTTTATAAT
30653417 TTTTACAA
1 TTTTACAA
30653425 TTTTTTACAA
1 --TTTTACAA
30653435 TTTTACAA
1 TTTTACAA
30653443 TTTTTACAA
1 -TTTTACAA
30653452 TTTTA-AA
1 TTTTACAA
30653459 TT
1 TT
30653461 ATTATATTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
7 4 0.12
8 13 0.39
9 8 0.24
10 8 0.24
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.57
Consensus pattern (8 bp):
TTTTACAA
Found at i:30653474 original size:21 final size:20
Alignment explanation
Indices: 30653449--30653503 Score: 51
Period size: 21 Copynumber: 2.6 Consensus size: 20
30653439 ACAATTTTTA
30653449 CAATTTTAAATTATT-ATATT
1 CAATTTTAAATTATTGATA-T
*
30653469 CAAATTATTATA-TATTGGATAT
1 C-AATT-TTAAATTATT-GATAT
30653491 CAATTTTAAATTA
1 CAATTTTAAATTA
30653504 ATAATCTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 9
0.72 0.05 0.23
Matches are distributed among these distances:
20 5 0.18
21 14 0.50
22 6 0.21
23 3 0.11
ACGTcount: A:0.42, C:0.05, G:0.04, T:0.49
Consensus pattern (20 bp):
CAATTTTAAATTATTGATAT
Found at i:30653657 original size:89 final size:91
Alignment explanation
Indices: 30653552--30653793 Score: 335
Period size: 97 Copynumber: 2.6 Consensus size: 91
30653542 TATAAAGAAC
* * *
30653552 TTATTTAATATATAAATTAAAAAGTACTAATTAATCCAAATCTTAAACCCTAACCCGACCCCAAA
1 TTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACCCGACCCCAAA
30653617 TCCCTAA-CCT-CTAACCCCTAAACT
66 TCCCTAACCCTCCTAACCCCTAAACT
**
30653641 TTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAAACTTGACCCCAA
1 TTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCT-AACCCGACCCCAA
*
30653706 ATCCCTAACCCCTAACCCCTAACCCTTAAACT
65 ATCCCTAA-CCCT----CCTAACCCCTAAACT
* * *
30653738 TTATTTAATATATAAATTAAAAAATAGTAATTAATCTAAACCCTAAACCATAACCC
1 TTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACCC
30653794 AATCCTGAGT
Statistics
Matches: 134, Mismatches: 11, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
89 48 0.36
90 19 0.14
92 3 0.02
96 3 0.02
97 61 0.46
ACGTcount: A:0.44, C:0.25, G:0.02, T:0.29
Consensus pattern (91 bp):
TTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACCCGACCCCAAA
TCCCTAACCCTCCTAACCCCTAAACT
Found at i:30653750 original size:97 final size:99
Alignment explanation
Indices: 30653618--30653892 Score: 360
Period size: 97 Copynumber: 2.8 Consensus size: 99
30653608 GACCCCAAAT
*
30653618 CCCTAACCTCTAACCCCTAAACTTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACC
1 CCCTAACCCCTAACCCCTAAACTTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACC
*
30653683 TTAAACCCTAAA-CTTGA-CCCCAAATCCC-TAAC
66 TTAAACCCTAAATCCTGAGCCCCAAA-CCCTTAAC
* *
30653715 CCCTAACCCCTAACCCTTAAACTTTATTTAATATATAAATTAAAAAATAGTAATTAATCTAAACC
1 CCCTAACCCCTAACCCCTAAACTTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACC
* * * *
30653780 CTAAACCATAACCCAATCCTGAGTCCCTAACCCTTAAC
66 TTAAACCCT-A---AATCCTGAGCCCCAAACCCTTAAC
* * * *
30653818 CCATAACCCATAACCCCTAAACCTTATTTAATATAT-AATTAAAATATACTAATTAATCTAAACC
1 CCCTAACCCCTAACCCCTAAACTTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACC
*
30653882 TTAAACTCTAA
66 TTAAACCCTAA
30653893 CCTAACACCA
Statistics
Matches: 154, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
97 69 0.45
98 2 0.01
101 3 0.02
102 39 0.25
103 41 0.27
ACGTcount: A:0.43, C:0.27, G:0.01, T:0.29
Consensus pattern (99 bp):
CCCTAACCCCTAACCCCTAAACTTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACC
TTAAACCCTAAATCCTGAGCCCCAAACCCTTAAC
Found at i:30653954 original size:12 final size:12
Alignment explanation
Indices: 30653937--30653961 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
30653927 CTCTTAACAT
30653937 CTAACCCCTAAC
1 CTAACCCCTAAC
30653949 CTAACCCCTAAC
1 CTAACCCCTAAC
30653961 C
1 C
30653962 CTTAACCCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.52, G:0.00, T:0.16
Consensus pattern (12 bp):
CTAACCCCTAAC
Found at i:30653967 original size:14 final size:13
Alignment explanation
Indices: 30653938--30653980 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
30653928 TCTTAACATC
30653938 TAACCCCTAACC-
1 TAACCCCTAACCT
30653950 TAACCCCTAACCCT
1 TAACCCCTAA-CCT
*
30653964 TAACCCATAAACCT
1 TAACCCCT-AACCT
30653978 TAA
1 TAA
30653981 ATCACATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
12 10 0.37
13 2 0.07
14 13 0.48
15 2 0.07
ACGTcount: A:0.37, C:0.42, G:0.00, T:0.21
Consensus pattern (13 bp):
TAACCCCTAACCT
Found at i:30654022 original size:14 final size:15
Alignment explanation
Indices: 30654003--30654035 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
30653993 CTTAAACCAG
30654003 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
30654017 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
30654032 AATC
1 AATC
30654036 TATAAAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:30654798 original size:114 final size:114
Alignment explanation
Indices: 30654590--30654927 Score: 455
Period size: 114 Copynumber: 3.0 Consensus size: 114
30654580 ATTTTAAATG
*
30654590 CCTGAGCATTAGCGGCGCTTACTTAAAAAAGCCACTAAATCCCCGAAAGCTCAGAAAAC-AGCGT
1 CCTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGA-CGT
*
30654654 CGTTGGGCTTAGGTATTTTTGCGGCACTTTCCCAAAAACACCGCTAAAGA
65 CGTTGGGCTTAGATATTTTTGCGGCACTTTCCCAAAAACACCGCTAAAGA
* * *
30654704 CTTGAGCATTAGCGGCGCTTACCTAAAAACGCCACTAAATCACCGAAAGCTCAGAAAACGACGTC
1 CCTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGACGTC
* * * * * * *
30654769 GTTGGGATTAGATTTTTTTGTGGCGCTTTCTCAAAAACGCCGCTAAAGC
66 GTTGGGCTTAGATATTTTTGCGGCACTTTCCCAAAAACACCGCTAAAGA
* * * *
30654818 CCTGAGCATTAGTGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTC
1 CCTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGACGTC
* ** ***
30654883 GTTGGGCTTAGGTA-TTTTGCGGTGCTTTCTTGAAAACACCGCTAA
66 GTTGGGCTTAGATATTTTTGCGGCACTTTCCCAAAAACACCGCTAA
30654928 TGCTTATTTT
Statistics
Matches: 196, Mismatches: 27, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
113 26 0.13
114 169 0.86
115 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (114 bp):
CCTGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGACGTC
GTTGGGCTTAGATATTTTTGCGGCACTTTCCCAAAAACACCGCTAAAGA
Found at i:30655921 original size:25 final size:25
Alignment explanation
Indices: 30655786--30655927 Score: 126
Period size: 25 Copynumber: 5.7 Consensus size: 25
30655776 GCATGTAAAT
* * * *
30655786 GGGAAGCTCTTCTGAGCTATATAAC
1 GGGAAGCTCATGTGAGCTAAATATC
30655811 GGGAAGCTCATGTGAGCTAAATAAT-
1 GGGAAGCTCATGTGAGCTAAAT-ATC
* **
30655836 GGGAAGCTCATGCGAGCTGTATATC
1 GGGAAGCTCATGTGAGCTAAATATC
* ** * *
30655861 GAGAAGCTCATAAGAGTTGAA-ATC
1 GGGAAGCTCATGTGAGCTAAATATC
*
30655885 GGGAAGTTCATGTGAGCTAAATATC
1 GGGAAGCTCATGTGAGCTAAATATC
* *
30655910 AGGAAGCTCATGAGAGCT
1 GGGAAGCTCATGTGAGCT
30655928 GTGGTGTGTC
Statistics
Matches: 93, Mismatches: 21, Indels: 6
0.77 0.17 0.05
Matches are distributed among these distances:
24 20 0.22
25 72 0.77
26 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.24
Consensus pattern (25 bp):
GGGAAGCTCATGTGAGCTAAATATC
Found at i:30660282 original size:17 final size:17
Alignment explanation
Indices: 30660260--30660307 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
30660250 AGTATTAAAT
30660260 AATAAAATAAAGTAATA
1 AATAAAATAAAGTAATA
*
30660277 AATAAATTAAAG-AA-A
1 AATAAAATAAAGTAATA
30660292 AAT--AATAAA-TAATA
1 AATAAAATAAAGTAATA
30660306 AA
1 AA
30660308 AATAAAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
13 7 0.26
14 3 0.11
15 4 0.15
16 2 0.07
17 11 0.41
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.23
Consensus pattern (17 bp):
AATAAAATAAAGTAATA
Found at i:30660311 original size:13 final size:13
Alignment explanation
Indices: 30660255--30660313 Score: 50
Period size: 13 Copynumber: 4.3 Consensus size: 13
30660245 AAATAAGTAT
30660255 TAAATAAT-AAAA
1 TAAATAATAAAAA
30660267 TAAAGTAATAAATAAA
1 TAAA-TAAT-AA-AAA
*
30660283 TTAAAGAA-AAATAA
1 -TAAATAATAAA-AA
30660297 TAAATAATAAAAA
1 TAAATAATAAAAA
30660310 TAAA
1 TAAA
30660314 AATTGGGTTG
Statistics
Matches: 38, Mismatches: 2, Indels: 13
0.72 0.04 0.25
Matches are distributed among these distances:
12 4 0.11
13 17 0.45
14 7 0.18
15 1 0.03
16 5 0.13
17 4 0.11
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (13 bp):
TAAATAATAAAAA
Found at i:30660314 original size:22 final size:22
Alignment explanation
Indices: 30660255--30660316 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
30660245 AAATAAGTAT
*
30660255 TAAATAAT-AAAAT-AAAGTAA
1 TAAATAATAAAAATAAAAATAA
* *
30660275 TAAATAA-ATTAAAGAAAAATAA
1 TAAATAATA-AAAATAAAAATAA
30660297 TAAATAATAAAAATAAAAAT
1 TAAATAATAAAAATAAAAAT
30660317 TGGGTTGCCT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
20 7 0.21
21 3 0.09
22 22 0.67
23 1 0.03
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (22 bp):
TAAATAATAAAAATAAAAATAA
Found at i:30668438 original size:45 final size:45
Alignment explanation
Indices: 30668334--30668933 Score: 287
Period size: 45 Copynumber: 13.7 Consensus size: 45
30668324 GTTTTAATCC
* * * ** *
30668334 GCTCCACTGCAACTTCAGGGAGATAGGA-TTGTC-GGCTTTAATCT
1 GCTCCACTGCAACTTCAAGGAGATAAGACTTGCCATAC-TTAGTCT
*
30668378 GCTCCACTGCAACTTCAAGGAGATAAGATTTGCCAT-CTTCAGTCT
1 GCTCCACTGCAACTTCAAGGAGATAAGACTTGCCATACTT-AGTCT
* **
30668423 GC-CTCACTGTAACTTC-AGGAGGATAAGACTTGCTTTACTTAGTCT
1 GCTC-CACTGCAACTTCAAGGA-GATAAGACTTGCCATACTTAGTCT
* * * * *
30668468 GCTCCACTGCAACTTCAGGGAAATAAGACTAG--ATGC-GA-TCT
1 GCTCCACTGCAACTTCAAGGAGATAAGACTTGCCATACTTAGTCT
* * * * * *
30668509 GCT-CTCTGCAACTTC-AGAGAGATAAGATCTAAG--GT-TTTAATCC
1 GCTCCACTGCAACTTCAAG-GAGATAAGA-CT-TGCCATACTTAGTCT
* * * * * *
30668552 GCTCCACTGCAACTTTAGGGAGATAGGA-TTGTC-GACTTTAATCT
1 GCTCCACTGCAACTTCAAGGAGATAAGACTTGCCATAC-TTAGTCT
* *
30668596 GCTCCACTGCAACTTCAAGGAGATAAGATTTGTCAT-CTTCAGTCT
1 GCTCCACTGCAACTTCAAGGAGATAAGACTTGCCATACTT-AGTCT
**
30668641 GC-CTCACTGCAACTTC-AGGAGGATAAGACTTGCTTTACTTAGTCT
1 GCTC-CACTGCAACTTCAAGGA-GATAAGACTTGCCATACTTAGTCT
* * * *
30668686 ACTCCACTGCAACTTC-AGAGAGATAAGACTAG--ATGC-GA-TCT
1 GCTCCACTGCAACTTCAAG-GAGATAAGACTTGCCATACTTAGTCT
* * *** *
30668727 GCT-CTCTGCGACTTC-AGAGAGATAAGA-TCTG--AGGTTTCAATCT
1 GCTCCACTGCAACTTCAAG-GAGATAAGACT-TGCCATACTT-AGTCT
* * * * ** *
30668770 GCTCCACTGCGACTTCAGGGAGATAGGA-TTGTC-GGCTTTAATCT
1 GCTCCACTGCAACTTCAAGGAGATAAGACTTGCCATAC-TTAGTCT
* * * *
30668814 GCTCCACTGCAACTTTAGGGATATAAGATTTGCCAT-CTTCAGTCT
1 GCTCCACTGCAACTTCAAGGAGATAAGACTTGCCATACTT-AGTCT
** *
30668859 G-TCTCACTGCAACTTC-AGGAGGATAAGACTTGCTTTACTTAGTTT
1 GCTC-CACTGCAACTTCAAGGA-GATAAGACTTGCCATACTTAGTCT
*
30668904 GCTCCACTGCAACTTCAGGGAGATAAGACT
1 GCTCCACTGCAACTTCAAGGAGATAAGACT
30668934 AGATGTGATC
Statistics
Matches: 441, Mismatches: 71, Indels: 87
0.74 0.12 0.15
Matches are distributed among these distances:
39 2 0.00
40 44 0.10
41 14 0.03
42 8 0.02
43 17 0.04
44 147 0.33
45 188 0.43
46 21 0.05
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.29
Consensus pattern (45 bp):
GCTCCACTGCAACTTCAAGGAGATAAGACTTGCCATACTTAGTCT
Found at i:30668627 original size:218 final size:218
Alignment explanation
Indices: 30668242--30669072 Score: 1385
Period size: 218 Copynumber: 3.8 Consensus size: 218
30668232 AATTTACTAT
* *
30668242 CTTAGTTTGCTCCACTGCAACTTCAGGGAAATAAGACTAGATGCGATCTGCTCTCTACAACTTCA
1 CTTAGTCTGCTCCACTGCAACTTCAGGGAAATAAGACTAGATGCGATCTGCTCTCTGCAACTTCA
*
30668307 GAGAGATAAGATCTAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGTCGGCTT
66 GAGAGATAAGATCTAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGTCGACTT
*
30668372 TAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGTAACT
131 TAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACT
30668437 TCAGGAGGATAAGACTTGCTTTA
196 TCAGGAGGATAAGACTTGCTTTA
30668460 CTTAGTCTGCTCCACTGCAACTTCAGGGAAATAAGACTAGATGCGATCTGCTCTCTGCAACTTCA
1 CTTAGTCTGCTCCACTGCAACTTCAGGGAAATAAGACTAGATGCGATCTGCTCTCTGCAACTTCA
*
30668525 GAGAGATAAGATCTAAGGTTTTAATCCGCTCCACTGCAACTTTAGGGAGATAGGATTGTCGACTT
66 GAGAGATAAGATCTAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGTCGACTT
*
30668590 TAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTCATCTTCAGTCTGCCTCACTGCAACT
131 TAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACT
30668655 TCAGGAGGATAAGACTTGCTTTA
196 TCAGGAGGATAAGACTTGCTTTA
* * * *
30668678 CTTAGTCTACTCCACTGCAACTTCAGAGAGATAAGACTAGATGCGATCTGCTCTCTGCGACTTCA
1 CTTAGTCTGCTCCACTGCAACTTCAGGGAAATAAGACTAGATGCGATCTGCTCTCTGCAACTTCA
* * * * *
30668743 GAGAGATAAGATCTGAGGTTTCAATCTGCTCCACTGCGACTTCAGGGAGATAGGATTGTCGGCTT
66 GAGAGATAAGATCTAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGTCGACTT
* * * *
30668808 TAATCTGCTCCACTGCAACTTTAGGGATATAAGATTTGCCATCTTCAGTCTGTCTCACTGCAACT
131 TAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACT
30668873 TCAGGAGGATAAGACTTGCTTTA
196 TCAGGAGGATAAGACTTGCTTTA
* * * *
30668896 CTTAGTTTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGTGATCTACTCTCTGCAACTTCA
1 CTTAGTCTGCTCCACTGCAACTTCAGGGAAATAAGACTAGATGCGATCTGCTCTCTGCAACTTCA
* *
30668961 GAGAGATAAGATCTGAGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTGTC-AGCT
66 GAGAGATAAGATCTAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGTCGA-CT
* * * *
30669025 TTAATCTGCTCCACTGTAATTTCAGGGAGATAAGATTTGTCATCTTCA
130 TTAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGCCATCTTCA
30669073 CTGATCTGCT
Statistics
Matches: 575, Mismatches: 37, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
218 575 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (218 bp):
CTTAGTCTGCTCCACTGCAACTTCAGGGAAATAAGACTAGATGCGATCTGCTCTCTGCAACTTCA
GAGAGATAAGATCTAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGTCGACTT
TAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACT
TCAGGAGGATAAGACTTGCTTTA
Found at i:30668752 original size:40 final size:44
Alignment explanation
Indices: 30668687--30668794 Score: 134
Period size: 40 Copynumber: 2.5 Consensus size: 44
30668677 ACTTAGTCTA
* *
30668687 CTCCACTGCAACTTCAGAGAGATAAGA-CT-A-GATGCGATCTG
1 CTCCACTGCGACTTCAGAGAGATAAGATCTGAGGATGCAATCTG
* * *
30668728 CT-CTCTGCGACTTCAGAGAGATAAGATCTGAGGTTTCAATCTG
1 CTCCACTGCGACTTCAGAGAGATAAGATCTGAGGATGCAATCTG
*
30668771 CTCCACTGCGACTTCAGGGAGATA
1 CTCCACTGCGACTTCAGAGAGATA
30668795 GGATTGTCGG
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
40 22 0.39
41 4 0.07
42 1 0.02
43 10 0.18
44 19 0.34
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (44 bp):
CTCCACTGCGACTTCAGAGAGATAAGATCTGAGGATGCAATCTG
Found at i:30669066 original size:45 final size:44
Alignment explanation
Indices: 30668249--30669066 Score: 446
Period size: 44 Copynumber: 18.8 Consensus size: 44
30668239 TATCTTAGTT
* * * ***
30668249 TGCTCCACTGCAACTTCAGGGAAATAAGA--CT-AGATGCGATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTGTCAGCTTTAATC
* * * * * *
30668290 TGCT-CTCTACAACTTCAGAGAGATAAGA-TCTAAGGTTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTGTCA-GCTTTAATC
* * *
30668333 CGCTCCACTGCAACTTCAGGGAGATAGGATTGTCGGCTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTGTCAGCTTTAATC
* * * * *
30668377 TGCTCCACTGCAACTTCAAGGAGATAAGATTTGCCATCTTCAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGA-TTGTCAGCTTTAATC
* * *
30668422 TGC-CTCACTGTAACTTCA-GGAGGATAAGACTTGCTTTA-C-TTAGTC
1 TGCTC-CACTGCAACTTCAGGGA-GATAAGA-TTG--TCAGCTTTAATC
* * * ***
30668467 TGCTCCACTGCAACTTCAGGGAAATAAGA--CT-AGATGCGATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTGTCAGCTTTAATC
* * * * *
30668508 TGCT-CTCTGCAACTTCAGAGAGATAAGA-TCTAAGGTTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTGTCA-GCTTTAATC
* * *
30668551 CGCTCCACTGCAACTTTAGGGAGATAGGATTGTC-GACTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTGTCAG-CTTTAATC
* * * *
30668595 TGCTCCACTGCAACTTCAAGGAGATAAGATTTGTCATCTTCAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGA-TTGTCAGCTTTAATC
* *
30668640 TGC-CTCACTGCAACTTCA-GGAGGATAAGACTTGCTTTA-C-TTAGTC
1 TGCTC-CACTGCAACTTCAGGGA-GATAAGA-TTG--TCAGCTTTAATC
* * * * ***
30668685 TACTCCACTGCAACTTCAGAGAGATAAGA--CT-AGATGCGATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTGTCAGCTTTAATC
* * * *
30668726 TGCT-CTCTGCGACTTCAGAGAGATAAGATCTG--AGGTTTCAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGAT-TGTCAGCTTT-AATC
* * *
30668769 TGCTCCACTGCGACTTCAGGGAGATAGGATTGTCGGCTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTGTCAGCTTTAATC
* * * * * *
30668813 TGCTCCACTGCAACTTTAGGGATATAAGATTTGCCATCTTCAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGA-TTGTCAGCTTTAATC
* * *
30668858 TG-TCTCACTGCAACTTCA-GGAGGATAAGACTTGCTTTA-C-TTAGTT
1 TGCTC-CACTGCAACTTCAGGGA-GATAAGA-TTG--TCAGCTTTAATC
* * * *
30668903 TGCTCCACTGCAACTTCAGGGAGATAAGA--CT-AGATGTGATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTGTCAGCTTTAATC
* * * *
30668944 TACT-CTCTGCAACTTCAGAGAGATAAGATCTG--AGGTTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGAT-TGTCA-GCTTTAATC
** *
30668987 CACTCCACTGCAACTTCAGGGAGATAGGATTGTCAGCTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTGTCAGCTTTAATC
* *
30669031 TGCTCCACTGTAATTTCAGGGAGATAAGATTTGTCA
1 TGCTCCACTGCAACTTCAGGGAGATAAGA-TTGTCA
30669067 TCTTCACTGA
Statistics
Matches: 600, Mismatches: 123, Indels: 104
0.73 0.15 0.13
Matches are distributed among these distances:
39 3 0.00
40 88 0.15
41 24 0.04
42 6 0.01
43 37 0.06
44 224 0.37
45 199 0.33
46 15 0.03
47 4 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (44 bp):
TGCTCCACTGCAACTTCAGGGAGATAAGATTGTCAGCTTTAATC
Found at i:30682367 original size:34 final size:35
Alignment explanation
Indices: 30682304--30682369 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
30682294 CTAATATTTT
*
30682304 TTTGGGCCATTGTATTTAGGCCTATTTTATTTCAG
1 TTTGGGCCATTGTATTTAGGCCTACTTTATTTCAG
*
30682339 TTTGGGCCA-TGTATTTTGGGCC-ACTTTATTT
1 TTTGGGCCATTGTA-TTTAGGCCTACTTTATTT
30682370 GGTTCTAGAC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 12 0.43
35 16 0.57
ACGTcount: A:0.15, C:0.15, G:0.21, T:0.48
Consensus pattern (35 bp):
TTTGGGCCATTGTATTTAGGCCTACTTTATTTCAG
Found at i:30684617 original size:18 final size:20
Alignment explanation
Indices: 30684578--30684619 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
30684568 TCGTTAAAAT
*
30684578 TTAATCATATAAAAAGTTAC
1 TTAATAATATAAAAAGTTAC
30684598 TTAATAATAT-AAAA-TTAC
1 TTAATAATATAAAAAGTTAC
30684616 TTAA
1 TTAA
30684620 ATTTTACAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 8 0.38
19 4 0.19
20 9 0.43
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.38
Consensus pattern (20 bp):
TTAATAATATAAAAAGTTAC
Found at i:30689863 original size:21 final size:22
Alignment explanation
Indices: 30689819--30689872 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
30689809 ACAAAAGTTA
* *
30689819 AATAACAATAAACATATGATTT
1 AATAAAAATAAACATATAATTT
*
30689841 AATAAAAATAAA-ATCTAATTT
1 AATAAAAATAAACATATAATTT
*
30689862 AATACAAATAA
1 AATAAAAATAA
30689873 TTATTTATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 17 0.61
22 11 0.39
ACGTcount: A:0.61, C:0.07, G:0.02, T:0.30
Consensus pattern (22 bp):
AATAAAAATAAACATATAATTT
Found at i:30690353 original size:4 final size:4
Alignment explanation
Indices: 30690344--30690378 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
30690334 TGAGTATTGG
30690344 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
30690379 TATTAGTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:30698278 original size:90 final size:89
Alignment explanation
Indices: 30698125--30698333 Score: 224
Period size: 90 Copynumber: 2.3 Consensus size: 89
30698115 ACTACTATTC
* ** * * **
30698125 AAAATGTTTGTATTATTTTTGTATCCGTAAATCAAATTTAGTTTGTATTATTTGGTGGTCGAATT
1 AAAATGTTCGTATTA-TTTTGTATATGTAAATAAAAATTAGTCGGTATTATTTGGTGGTCGAATT
* **
30698190 TTATATTTTTGTATATCAAGTTTCT
65 ATATATTTTCATATATCAAGTTTCT
* *
30698215 AAAATATTCGTATTAATTTTGTATATGTAAATAAAAATTAGTCGGTGTTATTT-GTCGGTCGAAT
1 AAAATGTTCGTATT-ATTTTGTATATGTAAATAAAAATTAGTCGGTATTATTTGGT-GGTCGAAT
* *
30698279 TATATATTTTCATATATTAATTTTCT
64 TATATATTTTCATATATCAAGTTTCT
**
30698305 AGGATGTTCGTATT-TTCTTGTATATGTAA
1 AAAATGTTCGTATTATT-TTGTATATGTAA
30698334 TTTTTGTTGG
Statistics
Matches: 99, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
88 2 0.02
89 14 0.14
90 82 0.83
91 1 0.01
ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50
Consensus pattern (89 bp):
AAAATGTTCGTATTATTTTGTATATGTAAATAAAAATTAGTCGGTATTATTTGGTGGTCGAATTA
TATATTTTCATATATCAAGTTTCT
Found at i:30698791 original size:42 final size:42
Alignment explanation
Indices: 30698735--30698821 Score: 138
Period size: 42 Copynumber: 2.1 Consensus size: 42
30698725 GTGTGAGAAC
30698735 AATCCGAAGAGTGCTAAGTGTTGAAGCTCAAGGTCGTCGCCA
1 AATCCGAAGAGTGCTAAGTGTTGAAGCTCAAGGTCGTCGCCA
* * * *
30698777 AATCCGGAGTGTGCTGAGTGTTGAGGCTCAAGGTCGTCGCCA
1 AATCCGAAGAGTGCTAAGTGTTGAAGCTCAAGGTCGTCGCCA
30698819 AAT
1 AAT
30698822 ATGTCTTCGA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.25, C:0.21, G:0.31, T:0.23
Consensus pattern (42 bp):
AATCCGAAGAGTGCTAAGTGTTGAAGCTCAAGGTCGTCGCCA
Found at i:30700022 original size:15 final size:15
Alignment explanation
Indices: 30700011--30700042 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
30700001 ATCTATACTT
30700011 TAATTGGTTATAATC
1 TAATTGGTTATAATC
30700026 TAATTGGTTATAATC
1 TAATTGGTTATAATC
30700041 TA
1 TA
30700043 TTCAATTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.06, G:0.12, T:0.47
Consensus pattern (15 bp):
TAATTGGTTATAATC
Found at i:30700140 original size:19 final size:20
Alignment explanation
Indices: 30700118--30700158 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
30700108 AGAAATTCAA
*
30700118 TTAAATT-TTAATTTAAACT
1 TTAAATTATTAAGTTAAACT
30700137 TT-AATTATTAAGTTAAACT
1 TTAAATTATTAAGTTAAACT
30700156 TTA
1 TTA
30700159 TGTTTTTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.51
Consensus pattern (20 bp):
TTAAATTATTAAGTTAAACT
Done.