Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63323194
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1953226 characters in sequence are not A, C, G, or T
File 93 of 199
Found at i:31915880 original size:22 final size:20
Alignment explanation
Indices: 31915848--31915891 Score: 54
Period size: 19 Copynumber: 2.1 Consensus size: 20
31915838 TTTACCGTGT
31915848 AAATTATATATTAACATATCAAA
1 AAATTATATA-TAA-ATAT-AAA
31915871 AAATT-TATATAAATATAAA
1 AAATTATATATAAATATAAA
31915890 AA
1 AA
31915892 TGCGATACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
19 5 0.24
20 4 0.19
21 3 0.14
22 4 0.19
23 5 0.24
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (20 bp):
AAATTATATATAAATATAAA
Found at i:31915891 original size:20 final size:23
Alignment explanation
Indices: 31915848--31915891 Score: 58
Period size: 20 Copynumber: 2.0 Consensus size: 23
31915838 TTTACCGTGT
*
31915848 AAATTATATATTAACATATCAAA
1 AAATTATATATTAACATATAAAA
31915871 AAATT-TATA-TAA-ATATAAAA
1 AAATTATATATTAACATATAAAA
31915891 A
1 A
31915892 TGCGATACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 8 0.40
21 3 0.15
22 4 0.20
23 5 0.25
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (23 bp):
AAATTATATATTAACATATAAAA
Found at i:31917331 original size:21 final size:21
Alignment explanation
Indices: 31917307--31917359 Score: 74
Period size: 19 Copynumber: 2.6 Consensus size: 21
31917297 ATATATAATA
31917307 AAAATATATTTTTTTAATTTT
1 AAAATATATTTTTTTAATTTT
*
31917328 -AAA-ATATTTTTTTATTTTT
1 AAAATATATTTTTTTAATTTT
*
31917347 AAAATAAATTTTT
1 AAAATATATTTTT
31917360 GGTGTTTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 15 0.54
20 6 0.21
21 7 0.25
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
AAAATATATTTTTTTAATTTT
Found at i:31919118 original size:22 final size:22
Alignment explanation
Indices: 31919092--31919156 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
31919082 CTCTTTGATA
*
31919092 TTTAGCACGTCAGTGCTCTCTG
1 TTTAGCACATCAGTGCTCTCTG
*
31919114 TTTAGCACAT-ATGTGTTCTCTG
1 TTTAGCACATCA-GTGCTCTCTG
** * *
31919136 CATAGCGCTTCAGTGCTCTCT
1 TTTAGCACATCAGTGCTCTCT
31919157 ATTAATTAGT
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.15, C:0.26, G:0.20, T:0.38
Consensus pattern (22 bp):
TTTAGCACATCAGTGCTCTCTG
Found at i:31919905 original size:2 final size:2
Alignment explanation
Indices: 31919898--31919927 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
31919888 CAAGTGATAC
31919898 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
31919928 ACAAACCAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:31920068 original size:20 final size:20
Alignment explanation
Indices: 31920036--31920073 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
31920026 TTGAAACATA
*
31920036 TTTAAAATAAAAATTATCGT
1 TTTAAAATAAAAAGTATCGT
31920056 TTTATAAAT-AAAAGTATC
1 TTTA-AAATAAAAAGTATC
31920074 ATGAAAATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.50, C:0.05, G:0.05, T:0.39
Consensus pattern (20 bp):
TTTAAAATAAAAAGTATCGT
Found at i:31920666 original size:16 final size:16
Alignment explanation
Indices: 31920641--31920689 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
31920631 CAATTGGATG
*
31920641 AAGAAAAAAAGGAAAA
1 AAGAAAAAAAAGAAAA
*
31920657 AAGAACAAAAAGAAATA
1 AAGAAAAAAAAGAAA-A
*
31920674 GATGAAAAAAAAGAAA
1 -AAGAAAAAAAAGAAA
31920690 GAAGGAAAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
16 13 0.48
17 1 0.04
18 13 0.48
ACGTcount: A:0.78, C:0.02, G:0.16, T:0.04
Consensus pattern (16 bp):
AAGAAAAAAAAGAAAA
Found at i:31924275 original size:5 final size:5
Alignment explanation
Indices: 31924262--31924334 Score: 92
Period size: 5 Copynumber: 14.6 Consensus size: 5
31924252 GACATTTTTT
* * * * * *
31924262 TATCA TAACA TAACA TAACA TAACA TAACA TAACA TATCA TATCA TATCA
1 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
31924312 TATCA TATCA TATCA TATCA TAT
1 TATCA TATCA TATCA TATCA TAT
31924335 TGCAGCATAT
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 66 1.00
ACGTcount: A:0.48, C:0.19, G:0.00, T:0.33
Consensus pattern (5 bp):
TATCA
Found at i:31925417 original size:5 final size:5
Alignment explanation
Indices: 31925407--31925431 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
31925397 TTGATAGACT
31925407 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
31925432 ATAACAAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:31925632 original size:1 final size:1
Alignment explanation
Indices: 31925626--31925654 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
31925616 AACTGAAAGT
31925626 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
31925655 GATAATCTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:31926004 original size:36 final size:36
Alignment explanation
Indices: 31925928--31926012 Score: 82
Period size: 36 Copynumber: 2.4 Consensus size: 36
31925918 TAGTAAAATT
* * *
31925928 AACAATAAAACAAAAGTTATATAATATTCAAATAAT
1 AACAATAAAACAAAAGTAATATAATAGTCAAATAAC
* ** * *
31925964 AACAATAAAATAGTAGTAATATAATAGTGAAATGAC
1 AACAATAAAACAAAAGTAATATAATAGTCAAATAAC
31926000 AACAA-AACAACAA
1 AACAATAA-AACAA
31926013 CGAAATGGCA
Statistics
Matches: 38, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
35 2 0.05
36 36 0.95
ACGTcount: A:0.61, C:0.09, G:0.07, T:0.22
Consensus pattern (36 bp):
AACAATAAAACAAAAGTAATATAATAGTCAAATAAC
Found at i:31927356 original size:26 final size:27
Alignment explanation
Indices: 31927317--31927370 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
31927307 ATTAAAAGAT
* *
31927317 ATTTTTTATGTTTTATAATTTTTAATA
1 ATTTTTAATGTTTTATAATATTTAATA
* *
31927344 ATTTTTAAT-TTTTTTAGTATTTAATA
1 ATTTTTAATGTTTTATAATATTTAATA
31927370 A
1 A
31927371 AATAATTAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (27 bp):
ATTTTTAATGTTTTATAATATTTAATA
Found at i:31930672 original size:26 final size:27
Alignment explanation
Indices: 31930633--31930686 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
31930623 ATTAAAAGAT
* **
31930633 ATTTTTTATGTTTTATAATTTTTAATA
1 ATTTTTAATGTTTTATAAGATTTAATA
*
31930660 ATTTTTAAT-TTTTTTAAGATTTAATA
1 ATTTTTAATGTTTTATAAGATTTAATA
31930686 A
1 A
31930687 AATAATTAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (27 bp):
ATTTTTAATGTTTTATAAGATTTAATA
Found at i:31932209 original size:21 final size:21
Alignment explanation
Indices: 31932185--31932243 Score: 70
Period size: 20 Copynumber: 2.9 Consensus size: 21
31932175 TGAACTTGAA
31932185 TTTAAAACTTTTAATAT-ATAT
1 TTTAAAA-TTTTAATATAATAT
*
31932206 TTTAAAATTTTGATATAATAT
1 TTTAAAATTTTAATATAATAT
*
31932227 TTT-TAATTTT-ATATAAT
1 TTTAAAATTTTAATATAAT
31932244 TAACATATTG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.20
20 14 0.40
21 14 0.40
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (21 bp):
TTTAAAATTTTAATATAATAT
Found at i:31932555 original size:23 final size:20
Alignment explanation
Indices: 31932513--31932561 Score: 71
Period size: 22 Copynumber: 2.3 Consensus size: 20
31932503 TATTTTTAAA
31932513 TAAAAATAAAAATAAACAAT
1 TAAAAATAAAAATAAACAAT
31932533 TAAATAATAAAAAATAAATCAAT
1 TAAA-AAT-AAAAATAAA-CAAT
31932556 TAAAAA
1 TAAAAA
31932562 ATCAATGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.15
21 3 0.12
22 11 0.42
23 8 0.31
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.22
Consensus pattern (20 bp):
TAAAAATAAAAATAAACAAT
Found at i:31934172 original size:17 final size:16
Alignment explanation
Indices: 31934150--31934192 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
31934140 ATTAAAGTAT
31934150 ATTTTTTAACTTTTATA
1 ATTTTTTAACTTTT-TA
*
31934167 ATTTTTAATACTTTTTA
1 ATTTTTTA-ACTTTTTA
31934184 ATTTTTTAA
1 ATTTTTTAA
31934193 TATTTAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 1 0.04
17 16 0.70
18 6 0.26
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTTTTTAACTTTTTA
Found at i:31934179 original size:18 final size:18
Alignment explanation
Indices: 31934150--31934194 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
31934140 ATTAAAGTAT
31934150 ATTTTTT-A-ACTTTTATA
1 ATTTTTTAATACTTTT-TA
31934167 A-TTTTTAATACTTTTTA
1 ATTTTTTAATACTTTTTA
31934184 ATTTTTTAATA
1 ATTTTTTAATA
31934195 TTTAATAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 5 0.20
17 5 0.20
18 15 0.60
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.64
Consensus pattern (18 bp):
ATTTTTTAATACTTTTTA
Found at i:31934188 original size:25 final size:26
Alignment explanation
Indices: 31934152--31934201 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
31934142 TAAAGTATAT
*
31934152 TTTTTAACTTTTATAATTTTTAATAC
1 TTTTTAACTTTTATAATATTTAATAC
*
31934178 TTTTTAA-TTTTTTAATATTTAATA
1 TTTTTAACTTTTATAATATTTAATA
31934202 AAATAATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (26 bp):
TTTTTAACTTTTATAATATTTAATAC
Found at i:31939572 original size:25 final size:24
Alignment explanation
Indices: 31939544--31939601 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
31939534 TATTATGAAG
* *
31939544 AATTTTATGAAATTATATATTATTA
1 AATTATATGAAATAATA-ATTATTA
*
31939569 AATTATATGTAATAATAATTATTTTA
1 AATTATATGAAATAATAATTA--TTA
31939595 AATTATA
1 AATTATA
31939602 CAAATTCATA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 4 0.14
25 14 0.50
26 10 0.36
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (24 bp):
AATTATATGAAATAATAATTATTA
Found at i:31939641 original size:91 final size:91
Alignment explanation
Indices: 31939424--31939626 Score: 313
Period size: 88 Copynumber: 2.3 Consensus size: 91
31939414 ATCTTATATG
*
31939424 AATTCATATAAGAATATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATAT
1 AATTCATATAAG-ATAATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATAT
* * * *
31939489 TTAATATTAATTATTTTAAATTGTATA
65 GTAATAATAATTATTTTAAATTATACA
* *
31939516 AATTCATATAAGAAAATTTATTATGAAGAATTTTATGAAA-T-TATAT-ATTATTAAATTATATG
1 AATTCATATAAGATAATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATATG
31939578 TAATAATAATTATTTTAAATTATACA
66 TAATAATAATTATTTTAAATTATACA
31939604 AATTCATATAAGATAATTTATTA
1 AATTCATATAAGATAATTTATTA
31939627 GTTATAATTA
Statistics
Matches: 103, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
88 60 0.58
89 5 0.05
90 1 0.01
91 25 0.24
92 12 0.12
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.47
Consensus pattern (91 bp):
AATTCATATAAGATAATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATATG
TAATAATAATTATTTTAAATTATACA
Found at i:31939720 original size:59 final size:57
Alignment explanation
Indices: 31939631--31939843 Score: 152
Period size: 56 Copynumber: 3.6 Consensus size: 57
31939621 TTATTAGTTA
*
31939631 TAATTATTTTAAATT-TTATTA-AG--TCATATATTTTAATTAAAATATATTTAATAT
1 TAATTA-TTTAAATTATTTTTATAGTATCATATATTTTAATTAAAATATATTTAATAT
* * **
31939685 TAATTATTTCAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATA
1 TAATTATTT-AAATTAT-TTTTATAGTATCATATATT-TTAATT-A--AAA-T-ATAT-TTAATA
31939750 T
57 T
* * * * *
31939751 TAATTATTAAGAATT-TTATTA-AAT-TCATGATATTTTAATTATAATATATTTAATAA
1 TAATTATTTA-AATTATTTTTATAGTATCAT-ATATTTTAATTAAAATATATTTAATAT
*
31939807 TAATTATGTTAATTTATATTTTATAGTATCATATATT
1 TAATTAT-TTAAATTAT-TTTTATAGTATCATATATT
31939844 ATGATTTGAG
Statistics
Matches: 121, Mismatches: 18, Indels: 35
0.70 0.10 0.20
Matches are distributed among these distances:
53 3 0.02
54 11 0.09
55 1 0.01
56 18 0.15
57 9 0.07
58 5 0.04
59 18 0.15
60 8 0.07
61 2 0.02
62 8 0.07
63 10 0.08
64 5 0.04
65 6 0.05
66 17 0.14
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (57 bp):
TAATTATTTAAATTATTTTTATAGTATCATATATTTTAATTAAAATATATTTAATAT
Found at i:31939750 original size:66 final size:64
Alignment explanation
Indices: 31939680--31939880 Score: 188
Period size: 66 Copynumber: 3.2 Consensus size: 64
31939670 AAATATATTT
31939680 AATATTAATTATTTCAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTATTT-AAATTAT-TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
31939745 G
64 G
* * * * * *
31939746 AATATTAATTATTAAGAATT-TTATTA-AAT-TCATGATATT-TTAATT-A-T-AA-T-ATAT-T
1 AATATTAATTATTTA-AATTATTTTTATAGTATCAT-ATATTATGATTTGAGTAAATTCATATAA
*
31939801 T
64 G
* *
31939802 AATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTAT-TTAAATTAT-TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
31939867 G
64 G
*
31939868 AATATTGATTATT
1 AATATTAATTATT
31939881 AAGAATTTTA
Statistics
Matches: 103, Mismatches: 18, Indels: 29
0.69 0.12 0.19
Matches are distributed among these distances:
56 14 0.14
57 7 0.07
58 5 0.05
59 9 0.09
60 9 0.09
61 2 0.02
62 9 0.09
63 9 0.09
64 5 0.05
65 7 0.07
66 27 0.26
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.49
Consensus pattern (64 bp):
AATATTAATTATTTAAATTATTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:31939790 original size:15 final size:15
Alignment explanation
Indices: 31939780--31939820 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
31939770 TAAATTCATG
31939780 ATAT-TTTAATTATA
1 ATATATTTAATTATA
*
31939794 ATATATTTAATAATA
1 ATATATTTAATTATA
31939809 AT-TATGTTAATT
1 ATATAT-TTAATT
31939821 TATATTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 7 0.30
15 16 0.70
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATATATTTAATTATA
Found at i:31939801 original size:122 final size:121
Alignment explanation
Indices: 31939642--31939941 Score: 498
Period size: 122 Copynumber: 2.5 Consensus size: 121
31939632 AATTATTTTA
* * *
31939642 AATTTTATT-AAGTCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTT
1 AATTTTATTAAATTCATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATT
31939705 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
31939762 AATTTTATTAAATTCATGATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATT
1 AATTTTATTAAATTCAT-ATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATT
*
31939827 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
65 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
31939884 AATTTTATTAAATT-ATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTCATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
31939942 ATGATTAAAT
Statistics
Matches: 168, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
120 43 0.26
121 13 0.08
122 110 0.65
123 2 0.01
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.49
Consensus pattern (121 bp):
AATTTTATTAAATTCATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTT
TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:31939913 original size:18 final size:17
Alignment explanation
Indices: 31939885--31939919 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
31939875 ATTATTAAGA
*
31939885 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
31939902 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
31939920 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:31940183 original size:16 final size:16
Alignment explanation
Indices: 31940165--31940221 Score: 78
Period size: 16 Copynumber: 3.6 Consensus size: 16
31940155 ACACAGCTTT
* * *
31940165 TCCATTACATCTCTAT
1 TCCAATACACCTCTAA
*
31940181 TCCATTACACCTCTAA
1 TCCAATACACCTCTAA
31940197 TCCAATACACCTCTAA
1 TCCAATACACCTCTAA
31940213 TCCAATACA
1 TCCAATACA
31940222 GCGAACCAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.33, C:0.35, G:0.00, T:0.32
Consensus pattern (16 bp):
TCCAATACACCTCTAA
Found at i:31950701 original size:3 final size:3
Alignment explanation
Indices: 31950682--31950778 Score: 65
Period size: 3 Copynumber: 33.0 Consensus size: 3
31950672 TAGTATAACC
* * * * *
31950682 ATT ATT TTT ACT ATT ATT ATT ATT -TT -TT AAT ATT ACT ATT ACT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * *
31950728 ATT -GT ATTT ATC ATT TTT ATT TTT ATT ACT ATT ATT ATT TTT ATT
1 ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
31950773 ATT ATT
1 ATT ATT
31950779 TACTCATTTA
Statistics
Matches: 69, Mismatches: 22, Indels: 6
0.71 0.23 0.06
Matches are distributed among these distances:
2 5 0.07
3 62 0.90
4 2 0.03
ACGTcount: A:0.28, C:0.05, G:0.01, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:31950710 original size:19 final size:18
Alignment explanation
Indices: 31950682--31950722 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
31950672 TAGTATAACC
* *
31950682 ATTATTTTTACTATTATT
1 ATTATTTTTAATATTACT
31950700 ATTATTTTTTAATATTACT
1 ATTA-TTTTTAATATTACT
31950719 ATTA
1 ATTA
31950723 CTATTATTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (18 bp):
ATTATTTTTAATATTACT
Found at i:31952878 original size:109 final size:107
Alignment explanation
Indices: 31952671--31953028 Score: 415
Period size: 109 Copynumber: 3.4 Consensus size: 107
31952661 TTATTTTTTT
* * **
31952671 GGTGATGGCCTGTCAATGGCCGGCACCCA--AC-AGTAAAAAAAAATTC-TTTTTTTT--T-TCA
1 GGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTTTAAAAAAATTCTTTTTTTTTCGTGTCA
* *
31952729 GAATAAGATATAAATATACG-----AA--AAAAAAAAATTTG
66 GAGTCAGATATAAATATACGAAAAAAATTAAAAAAAAATTTG
31952764 GGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTTTAAAAAAATTC-TTTTTTTT-GTGTCA
1 GGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTTTAAAAAAATTCTTTTTTTTTCGTGTCA
* **
31952827 GAGTCAGATATAATTATACGAAAAAAATTTTAAAAAAATTTTTTTG
66 GAGTCAGATATAAATATACGAAAAAAA--TTAAAAAAA--AATTTG
*
31952873 GGTGCTGGCCTGTCAATGGCCAGCACCCAGTACAAATTTTAAAAAAAATTCTTTTTTTTTTCGTG
1 GGTGCTGGCCTGTCAATGGCCGGCACCCAGTAC-AATTTT-AAAAAAATTC-TTTTTTTTTCGTG
* *
31952938 TTAGAGTCAGATATAAATATACTAAAAAAATTAAAAAAAAATTTG
63 TCAGAGTCAGATATAAATATACGAAAAAAATTAAAAAAAAATTTG
* *
31952983 GGTGTTGGCCTGTCAATGGCCGGCACCCAGTACAAATTTAAAAAAA
1 GGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTTTAAAAAAA
31953029 AAAAAATTTC
Statistics
Matches: 226, Mismatches: 18, Indels: 27
0.83 0.07 0.10
Matches are distributed among these distances:
93 28 0.12
95 2 0.01
96 20 0.09
97 1 0.00
98 20 0.09
103 2 0.01
107 7 0.03
108 7 0.03
109 41 0.18
110 41 0.18
111 10 0.04
112 9 0.04
113 8 0.04
114 30 0.13
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (107 bp):
GGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTTTAAAAAAATTCTTTTTTTTTCGTGTCA
GAGTCAGATATAAATATACGAAAAAAATTAAAAAAAAATTTG
Found at i:31952998 original size:110 final size:108
Alignment explanation
Indices: 31952751--31953030 Score: 413
Period size: 110 Copynumber: 2.6 Consensus size: 108
31952741 AATATACGAA
31952751 AAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTAC-AATTTT-AAAAAAATTCT
1 AAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAATTTTAAAAAAAATTCT
*
31952814 TTTTTTTGTGTCAGAGTCAGATATAATTATACGAAAAAAATTTT
66 TTTTTTTGTGTCAGAGTCAGATATAAATATACGAAAAAAA-TTT
** *
31952858 AAAAAAATTTTTTTGGGTGCTGGCCTGTCAATGGCCAGCACCCAGTACAAATTTTAAAAAAAATT
1 AAAAAAA--AATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAATTTTAAAAAAAATT
* *
31952923 CTTTTTTTTTTCGTGTTAGAGTCAGATATAAATATACTAAAAAAA-TT
64 C--TTTTTTTT-GTGTCAGAGTCAGATATAAATATACGAAAAAAATTT
* *
31952970 AAAAAAAAATTTGGGTGTTGGCCTGTCAATGGCCGGCACCCAGTACAAATTTAAAAAAAAA
1 AAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAATTTTAAAAAAAA
31953031 AAAATTTCGT
Statistics
Matches: 155, Mismatches: 11, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
107 7 0.05
109 36 0.23
110 55 0.35
111 10 0.06
112 9 0.06
113 8 0.05
114 30 0.19
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.31
Consensus pattern (108 bp):
AAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAATTTTAAAAAAAATTCT
TTTTTTTGTGTCAGAGTCAGATATAAATATACGAAAAAAATTT
Found at i:31953347 original size:21 final size:21
Alignment explanation
Indices: 31953323--31953374 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 21
31953313 GAATTTGAAA
31953323 TTAAAACTTTTAATAT-ATATT
1 TTAAAA-TTTTAATATAATATT
*
31953344 TTAAAATTTTGATATAATATT
1 TTAAAATTTTAATATAATATT
*
31953365 TT-TAATTTTA
1 TTAAAATTTTA
31953375 TATTATTAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.52
21 13 0.48
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (21 bp):
TTAAAATTTTAATATAATATT
Found at i:31953358 original size:20 final size:22
Alignment explanation
Indices: 31953323--31953366 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
31953313 GAATTTGAAA
31953323 TTAAAACTTTTAATAT-ATATT
1 TTAAAACTTTTAATATAATATT
*
31953344 TTAAAA-TTTTGATATAATATT
1 TTAAAACTTTTAATATAATATT
31953365 TT
1 TT
31953367 TAATTTTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (22 bp):
TTAAAACTTTTAATATAATATT
Found at i:31953371 original size:20 final size:19
Alignment explanation
Indices: 31953323--31953381 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 19
31953313 GAATTTGAAA
31953323 TTAAAACTTTTAATATATATT
1 TTAAAA-TTTT-ATATATATT
31953344 TTAAAATTTTGATATAATATT
1 TTAAAATTTT-ATAT-ATATT
*
31953365 TT-TAATTTTATAT-TATT
1 TTAAAATTTTATATATATT
31953382 AACATATTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
17 4 0.11
19 4 0.11
20 14 0.40
21 13 0.37
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (19 bp):
TTAAAATTTTATATATATT
Found at i:31953696 original size:20 final size:19
Alignment explanation
Indices: 31953653--31953697 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
31953643 TCTTTAAATA
31953653 AAAAT-AAAAATAAACAAT
1 AAAATAAAAAATAAACAAT
**
31953671 TGAATAAAAAATAAATCAAT
1 AAAATAAAAAATAAA-CAAT
31953691 AAAATAA
1 AAAATAA
31953698 TTTATTTTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
18 3 0.14
19 9 0.43
20 9 0.43
ACGTcount: A:0.73, C:0.04, G:0.02, T:0.20
Consensus pattern (19 bp):
AAAATAAAAAATAAACAAT
Found at i:31955039 original size:63 final size:63
Alignment explanation
Indices: 31954940--31955068 Score: 222
Period size: 63 Copynumber: 2.0 Consensus size: 63
31954930 TTTGATATTA
* *
31954940 GAACAACCAGAGATAGTTAACTTGTCAAGATGAGTGCAGTGTAGCAACATCCGTTCCAATATG
1 GAACAACCAGAGATAATTAACCTGTCAAGATGAGTGCAGTGTAGCAACATCCGTTCCAATATG
* *
31955003 GAACAACCAGAGATAATTAACCTGTCAAGATGAGTGCAGTGTTGCAACATCTGTTCCAATATG
1 GAACAACCAGAGATAATTAACCTGTCAAGATGAGTGCAGTGTAGCAACATCCGTTCCAATATG
31955066 GAA
1 GAA
31955069 TCATTCATAT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.24
Consensus pattern (63 bp):
GAACAACCAGAGATAATTAACCTGTCAAGATGAGTGCAGTGTAGCAACATCCGTTCCAATATG
Found at i:31962849 original size:72 final size:71
Alignment explanation
Indices: 31962758--31962937 Score: 220
Period size: 72 Copynumber: 2.5 Consensus size: 71
31962748 CGAAGTATGT
* * * *
31962758 TTTTATCAATAGTTATTTATATTTAGTTTTTGGATATTGAATTTATGTTCTACTTATTTATGT-G
1 TTTTATTAATAGTTGTTTATATTT-GTTTTTGGATATTGAATTTATGTTCCACTTATTT-TGTAC
31962822 T-AATCTAG
64 TAAAT-TAG
* * * *
31962830 TTTTATTAATAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATGTTCCACTTATTTTTTACT
1 TTTTATTAATAGTTGTTTATATTT-GTTTTTGGATATTGAATTTATGTTCCACTTATTTTGTACT
31962895 AAATTAG
65 AAATTAG
* *
31962902 TTTTATTAATAGTTGTTTATATATGATTTTGGATAT
1 TTTTATTAATAGTTGTTTATATTTGTTTTTGGATAT
31962938 AAAATCTATT
Statistics
Matches: 92, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
71 11 0.12
72 78 0.85
73 3 0.03
ACGTcount: A:0.26, C:0.05, G:0.13, T:0.56
Consensus pattern (71 bp):
TTTTATTAATAGTTGTTTATATTTGTTTTTGGATATTGAATTTATGTTCCACTTATTTTGTACTA
AATTAG
Found at i:31964970 original size:13 final size:13
Alignment explanation
Indices: 31964952--31964976 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
31964942 CTCAAAATTT
31964952 TCAAAAGCACTTC
1 TCAAAAGCACTTC
31964965 TCAAAAGCACTT
1 TCAAAAGCACTT
31964977 TTCTGCAGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.28, G:0.08, T:0.24
Consensus pattern (13 bp):
TCAAAAGCACTTC
Found at i:31965642 original size:23 final size:22
Alignment explanation
Indices: 31965615--31965657 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
31965605 TTATTTAAAC
31965615 AAATACTCATATTTATATAATTA
1 AAATACTCATATTT-TATAATTA
*
31965638 AAATATTCATATTTTATAAT
1 AAATACTCATATTTTATAAT
31965658 AGGTTAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (22 bp):
AAATACTCATATTTTATAATTA
Found at i:31966039 original size:31 final size:34
Alignment explanation
Indices: 31966004--31966067 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 34
31965994 ACATATTTTA
31966004 ACATTTAT-ACTAT-A-AAATATTTATTATTAAT
1 ACATTTATAACTATAATAAATATTTATTATTAAT
* *
31966035 ACATTTTTAATTATAATAAATATTTATTATTAA
1 ACATTTATAACTATAATAAATATTTATTATTAA
31966068 ATATTTTAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 7 0.25
32 4 0.14
33 1 0.04
34 16 0.57
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (34 bp):
ACATTTATAACTATAATAAATATTTATTATTAAT
Found at i:31966060 original size:17 final size:16
Alignment explanation
Indices: 31966018--31966073 Score: 62
Period size: 17 Copynumber: 3.5 Consensus size: 16
31966008 TTATACTATA
31966018 AAATATTTATTATTAAT
1 AAATATTTATTA-TAAT
* *
31966035 ACATTTTTAATTATAAT
1 AAATATTT-ATTATAAT
31966052 AAATATTTATTAT--T
1 AAATATTTATTATAAT
31966066 AAATATTT
1 AAATATTT
31966074 TAGAAGAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
14 9 0.26
16 5 0.15
17 16 0.47
18 4 0.12
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (16 bp):
AAATATTTATTATAAT
Found at i:31977168 original size:18 final size:18
Alignment explanation
Indices: 31977121--31977169 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
31977111 GTAGTGATTC
31977121 AATTTGGTTAATTCGGTT
1 AATTTGGTTAATTCGGTT
* *
31977139 AATTCGGGTAATTCGGTT
1 AATTTGGTTAATTCGGTT
31977157 AATTTGGTTAATT
1 AATTTGGTTAATT
31977170 TTTAACCAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.24, C:0.06, G:0.22, T:0.47
Consensus pattern (18 bp):
AATTTGGTTAATTCGGTT
Found at i:31977170 original size:9 final size:9
Alignment explanation
Indices: 31977121--31977169 Score: 71
Period size: 9 Copynumber: 5.4 Consensus size: 9
31977111 GTAGTGATTC
*
31977121 AATTTGGTT
1 AATTCGGTT
31977130 AATTCGGTT
1 AATTCGGTT
*
31977139 AATTCGGGT
1 AATTCGGTT
31977148 AATTCGGTT
1 AATTCGGTT
*
31977157 AATTTGGTT
1 AATTCGGTT
31977166 AATT
1 AATT
31977170 TTTAACCAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.24, C:0.06, G:0.22, T:0.47
Consensus pattern (9 bp):
AATTCGGTT
Found at i:31978973 original size:25 final size:26
Alignment explanation
Indices: 31978945--31978998 Score: 83
Period size: 25 Copynumber: 2.1 Consensus size: 26
31978935 AGAGATGTTT
**
31978945 CATATATATTGTGAAGTCATGAT-TA
1 CATATATACCGTGAAGTCATGATATA
31978970 CATATATACCGTGAAGTCATGATATA
1 CATATATACCGTGAAGTCATGATATA
31978996 CAT
1 CAT
31978999 GATTAATGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 21 0.81
26 5 0.19
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35
Consensus pattern (26 bp):
CATATATACCGTGAAGTCATGATATA
Found at i:31982877 original size:41 final size:41
Alignment explanation
Indices: 31982775--31982969 Score: 158
Period size: 41 Copynumber: 4.7 Consensus size: 41
31982765 CATTTCGGAC
* ** *
31982775 TATAAGTCTAGCAGGCTAAAAGCCGGTGTACTGAATCAGGT
1 TATAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGT
* * * * *
31982816 TTTAAAACCTAGCAAGCTAAGTGCTGGTGAACTGAATTAGGT
1 TAT-AAGCCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGT
** * ** *
31982858 TATAAGCCTAGCAGGCTAAGAACCAGTGATTTGAATCATGT
1 TATAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGT
* * * * * *
31982899 TATATGCCTAGCAGGATAAGTGCCGGTGATCAGAATTAGACT
1 TATAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAATCAG-GT
* *
31982941 T-TAAGCCTAACAGGCTAAGTGCTGGTGAA
1 TATAAGCCTAGCAGGCTAAGTGCCGGTGAA
31982970 TCTATTTAAA
Statistics
Matches: 117, Mismatches: 35, Indels: 4
0.75 0.22 0.03
Matches are distributed among these distances:
41 83 0.71
42 34 0.29
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.26
Consensus pattern (41 bp):
TATAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGT
Found at i:31982893 original size:83 final size:84
Alignment explanation
Indices: 31982775--31982959 Score: 191
Period size: 82 Copynumber: 2.2 Consensus size: 84
31982765 CATTTCGGAC
* * * *
31982775 TATAAGTCTAGCAGGCTAA-AAGCCGGTGTACTGAATCAGGTTTTAAAACCTAGCAAGCTAAGTG
1 TATAAGCCTAGCAGGCTAAGAAGCCAGTGTACTGAATCAGGTTAT-AAACCTAGCAAGATAAGTG
* * *
31982839 CTGGTGAACTGAATTAG-GT
65 CCGGTGAACAGAATTAGACT
* * ** *
31982858 TATAAGCCTAGCAGGCTAAGAA-CCAGTG-ATTTGAATCATGTTATATGCCTAGCAGGATAAGTG
1 TATAAGCCTAGCAGGCTAAGAAGCCAGTGTA-CTGAATCAGGTTATAAACCTAGCAAGATAAGTG
*
31982921 CCGGTGATCAGAATTAGACT
65 CCGGTGAACAGAATTAGACT
*
31982941 T-TAAGCCTAACAGGCTAAG
1 TATAAGCCTAGCAGGCTAAG
31982960 TGCTGGTGAA
Statistics
Matches: 85, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
82 47 0.55
83 36 0.42
84 2 0.02
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (84 bp):
TATAAGCCTAGCAGGCTAAGAAGCCAGTGTACTGAATCAGGTTATAAACCTAGCAAGATAAGTGC
CGGTGAACAGAATTAGACT
Found at i:31983176 original size:36 final size:36
Alignment explanation
Indices: 31983136--31983249 Score: 117
Period size: 34 Copynumber: 3.2 Consensus size: 36
31983126 TGGATATATA
*
31983136 TATATATGTATGCATTTGGCATATGTGGATT-ATAAG
1 TATATATGTATGCATTTGGCATATGTAG-TTGATAAG
* *
31983172 TATATATG--TGCATTCGGCACATGTAGTTGATAAG
1 TATATATGTATGCATTTGGCATATGTAGTTGATAAG
* * * * *
31983206 TATAAATATATGCTTTTGGCATATGTATTTGAATAAT
1 TATATATGTATGCATTTGGCATATGTAGTTG-ATAAG
31983243 TATATAT
1 TATATAT
31983250 ATAAATGCAT
Statistics
Matches: 63, Mismatches: 11, Indels: 7
0.78 0.14 0.09
Matches are distributed among these distances:
33 2 0.03
34 26 0.41
36 25 0.40
37 10 0.16
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.42
Consensus pattern (36 bp):
TATATATGTATGCATTTGGCATATGTAGTTGATAAG
Found at i:31983505 original size:22 final size:21
Alignment explanation
Indices: 31983466--31983506 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
31983456 ATCTTAATAA
31983466 ATTTACTTAATGAATTATATG
1 ATTTACTTAATGAATTATATG
* *
31983487 ATTTAGTTATATGTATTATA
1 ATTTACTTA-ATGAATTATA
31983507 GATATGGTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.37, C:0.02, G:0.10, T:0.51
Consensus pattern (21 bp):
ATTTACTTAATGAATTATATG
Found at i:31985830 original size:43 final size:43
Alignment explanation
Indices: 31985748--31985859 Score: 111
Period size: 43 Copynumber: 2.6 Consensus size: 43
31985738 TGTTTTCGAG
* * **
31985748 TAAGACCCTGTGTGGGACAGTGGCATTGATTTGTAATTACGA-A
1 TAAGACCATGTGTGGGACAGTGGCATCGATTCATAATTAC-ATA
* * *
31985791 TAAGACCTTGTGTGGGACAGTGGCATCG-TTACATGATTACATG
1 TAAGACCATGTGTGGGACAGTGGCATCGATT-CATAATTACATA
* *
31985834 TAAGACCACGTGTGGGACATTGGCAT
1 TAAGACCATGTGTGGGACAGTGGCAT
31985860 TGTACGATAA
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
42 3 0.05
43 55 0.95
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (43 bp):
TAAGACCATGTGTGGGACAGTGGCATCGATTCATAATTACATA
Found at i:31986720 original size:47 final size:47
Alignment explanation
Indices: 31986636--31987211 Score: 567
Period size: 47 Copynumber: 12.1 Consensus size: 47
31986626 ATTCGATTCA
* * *
31986636 TGTCCAA-TTTGATATATATATATGCTGCCCAAATTGGTGTATAAATGC
1 TGTCCAATTTTGATGTATA-A-ATGCTGTCCAATTTGGTGTATAAATGC
* *
31986684 TGTCCAATTTTGATGTATAAATGCTG-CCTAATTTGGTGTCTATATGC
1 TGTCCAATTTTGATGTATAAATGCTGTCC-AATTTGGTGTATAAATGC
* * * * * *
31986731 AGTCCAATTTTGGTGTAAAAATGCTGTCCAATTAT-ATATATATATGC
1 TGTCCAATTTTGATGTATAAATGCTGTCCAATT-TGGTGTATAAATGC
* *
31986778 TGCCCAA-ATTGATGTATAAATGCTGTCCAATTTTGGTGTATAAATGC
1 TGTCCAATTTTGATGTATAAATGCTGTCCAA-TTTGGTGTATAAATGC
* * * * *
31986825 AGTCCAATCTGATAT-ATATATATATGCT-ACCTAAATTGGTGTATAAATGC
1 TGTCCAAT-T--T-TGATGTATAAATGCTGTCC-AATTTGGTGTATAAATGC
* *
31986875 TGTCCAATTTTGATGTATAAATGCTG-CCTAATTTGGTGTCTATATGC
1 TGTCCAATTTTGATGTATAAATGCTGTCC-AATTTGGTGTATAAATGC
* * * * * *
31986922 AGTCCAATTTTGGTGTAAAAATGCTGTCCAATTTGATATATATATGC
1 TGTCCAATTTTGATGTATAAATGCTGTCCAATTTGGTGTATAAATGC
* * *
31986969 TGCCCAA-ATTGGTGTATAAATGCTGTCCAATTTTGGTGTATAAATGC
1 TGTCCAATTTTGATGTATAAATGCTGTCCAA-TTTGGTGTATAAATGC
* * * *
31987016 TGTCCAA-TTTGATATATATATGCTGCCCAAATTGGTGTATAAATGC
1 TGTCCAATTTTGATGTATAAATGCTGTCCAATTTGGTGTATAAATGC
* * *
31987062 TGTCTAATTTTGGTGTATAAATGCTGTCCAATTTGGTGTATATATGC
1 TGTCCAATTTTGATGTATAAATGCTGTCCAATTTGGTGTATAAATGC
* * *
31987109 TGTCCAATTTTGATGTATAAATGCTGTCCAATTTGGTATATATATAC
1 TGTCCAATTTTGATGTATAAATGCTGTCCAATTTGGTGTATAAATGC
* * * *
31987156 TGTCCAATTTTGGTGTAAAAATACTGTCCAATTTGGTATATATATATGC
1 TGTCCAATTTTGATGTATAAATGCTGTCCAATTTGGTGTATA-A-ATGC
*
31987205 TGCCCAA
1 TGTCCAA
31987212 CCTATGTTGT
Statistics
Matches: 441, Mismatches: 68, Indels: 37
0.81 0.12 0.07
Matches are distributed among these distances:
46 66 0.15
47 303 0.69
48 13 0.03
49 20 0.05
50 24 0.05
51 14 0.03
52 1 0.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (47 bp):
TGTCCAATTTTGATGTATAAATGCTGTCCAATTTGGTGTATAAATGC
Found at i:31986816 original size:70 final size:69
Alignment explanation
Indices: 31986652--31987211 Score: 457
Period size: 70 Copynumber: 7.9 Consensus size: 69
31986642 ATTTGATATA
* * * * * * *
31986652 TATATATGCTGCCCAAATTGGTGTATAAATGCTGTCCAATTTTGATGTATAAATGCTGCCTAATT
1 TATAAATGCTGTCCAATTTGGTGTATAAATGCTGTCCAATTGT-ATATATATATGCTGCCCAATT
31986717 TGGTG
65 TGGTG
* * * * * *
31986722 TCTATATGCAGTCCAATTTTGGTGTAAAAATGCTGTCCAATTATATATATATATGCTGCCCAAAT
1 TATAAATGCTGTCCAA-TTTGGTGTATAAATGCTGTCCAATTGTATATATATATGCTGCCCAATT
*
31986787 TGATG
65 TGGTG
* * *
31986792 TATAAATGCTGTCCAATTTTGGTGTATAAATGCAGTCCAATCTGATATATATATATATGCTACCT
1 TATAAATGCTGTCCAA-TTTGGTGTATAAATGCTGTCCAAT-TG---TATATATATATGCTGCCC
*
31986857 AAATTGGTG
61 AATTTGGTG
* * * * * *
31986866 TATAAATGCTGTCCAATTTTGATGTATAAATGCTG-CCTAATT-TGGTGTCTATATGCAGTCCAA
1 TATAAATGCTGTCCAA-TTTGGTGTATAAATGCTGTCC-AATTGT-ATATATATATGCTGCCCAA
31986929 TTTTGGTG
63 -TTTGGTG
* * * * * * *
31986937 TAAAAATGCTGTCCAATTTGATATATATATGCTGCCCAAATTGGTGTATA-A-ATGCTGTCCAAT
1 TATAAATGCTGTCCAATTTGGTGTATAAATGCTGTCC-AATT-GTATATATATATGCTGCCCAA-
31987000 TTTGGTG
63 TTTGGTG
* * * * * * *
31987007 TATAAATGCTGTCCAATTTGATATATATATGCTGCCCAAATTGGTGTATA-A-ATGCTGTCTAAT
1 TATAAATGCTGTCCAATTTGGTGTATAAATGCTGTCC-AATT-GTATATATATATGCTGCCCAA-
31987070 TTTGGTG
63 TTTGGTG
* * * * *
31987077 TATAAATGCTGTCCAATTTGGTGTATATATGCTGTCCAATTTTGATGTATAAATGCTGTCCAATT
1 TATAAATGCTGTCCAATTTGGTGTATAAATGCTGTCCAATTGT-ATATATATATGCTGCCCAATT
*
31987142 TGGTA
65 TGGTG
* * * *
31987147 TATATATACTGTCCAATTTTGGTGTAAAAATACTGTCCAATTTGGTATATATATATGCTGCCCAA
1 TATAAATGCTGTCCAA-TTTGGTGTATAAATGCTGTCCAA-TT-GTATATATATATGCTGCCCAA
31987212 CCTATGTTGT
Statistics
Matches: 417, Mismatches: 56, Indels: 32
0.83 0.11 0.06
Matches are distributed among these distances:
68 1 0.00
69 8 0.02
70 239 0.57
71 83 0.20
72 21 0.05
73 5 0.01
74 60 0.14
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (69 bp):
TATAAATGCTGTCCAATTTGGTGTATAAATGCTGTCCAATTGTATATATATATGCTGCCCAATTT
GGTG
Found at i:31986845 original size:117 final size:117
Alignment explanation
Indices: 31986636--31987200 Score: 634
Period size: 117 Copynumber: 4.8 Consensus size: 117
31986626 ATTCGATTCA
* * * *
31986636 TGTCCAA-TTTGATATATATATATGCTGCCCAAATTGGTGTATAAATGCTGTCCAATTTTGATGT
1 TGTCCAATTTTGATGTATA-A-ATGCTGCCCAATTTGGTGTATATATGCTGTCCAATTTTGGTGT
* * * *
31986700 ATAAATGCTG-CCTAATTTGGTGTCTATATGCAGTCCAATTTTGGTGTAAAAATGC
64 ATAAATGCTGTCC-AATTTGGTATATATATGCAGTCCAA-ATTGGTGTATAAATGC
* * * * * *
31986755 TGTCCAATTAT-ATATATATATGCTGCCCAAATTGATGTATAAATGCTGTCCAATTTTGGTGTAT
1 TGTCCAATTTTGATGTATAAATGCTGCCCAATTTGGTGTATATATGCTGTCCAATTTTGGTGTAT
* * * **
31986819 AAATGCAGTCCAATCTGATATATATATATATGCTACCTAAATTGGTGTATAAATGC
66 AAATGCTGTCCAATTTGGTATATATATGCA-G-T-CC-AAATTGGTGTATAAATGC
* * * *
31986875 TGTCCAATTTTGATGTATAAATGCTGCCTAATTTGGTGTCTATATGCAGTCCAATTTTGGTGTAA
1 TGTCCAATTTTGATGTATAAATGCTGCCCAATTTGGTGTATATATGCTGTCCAATTTTGGTGTAT
* * *
31986940 AAATGCTGTCCAATTTGATATATATATGCTGCCCAAATTGGTGTATAAATGC
66 AAATGCTGTCCAATTTGGTATATATATGCAGTCCAAATTGGTGTATAAATGC
* * * * * *
31986992 TGTCCAATTTTGGTGTATAAATGCTGTCCAATTTGATATATATATGCTGCCCAA-ATTGGTGTAT
1 TGTCCAATTTTGATGTATAAATGCTGCCCAATTTGGTGTATATATGCTGTCCAATTTTGGTGTAT
* * * * * *
31987056 AAATGCTGTCTAATTTTGGTGTATAAATGCTGTCCAATTTGGTGTATATATGC
66 AAATGCTGTCCAA-TTTGGTATATATATGCAGTCCAAATTGGTGTATAAATGC
* * * *
31987109 TGTCCAATTTTGATGTATAAATGCTGTCCAATTTGGTATATATATACTGTCCAATTTTGGTGTAA
1 TGTCCAATTTTGATGTATAAATGCTGCCCAATTTGGTGTATATATGCTGTCCAATTTTGGTGTAT
*
31987174 AAATACTGTCCAATTTGGTATATATAT
66 AAATGCTGTCCAATTTGGTATATATAT
31987201 ATGCTGCCCA
Statistics
Matches: 381, Mismatches: 56, Indels: 20
0.83 0.12 0.04
Matches are distributed among these distances:
116 20 0.05
117 222 0.58
118 24 0.06
119 15 0.04
120 29 0.08
121 71 0.19
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (117 bp):
TGTCCAATTTTGATGTATAAATGCTGCCCAATTTGGTGTATATATGCTGTCCAATTTTGGTGTAT
AAATGCTGTCCAATTTGGTATATATATGCAGTCCAAATTGGTGTATAAATGC
Found at i:31990990 original size:16 final size:18
Alignment explanation
Indices: 31990950--31990988 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
31990940 AATAATGTAT
31990950 TATATTATAAAGTTAATA
1 TATATTATAAAGTTAATA
31990968 TATATTATAAAGTTAATA
1 TATATTATAAAGTTAATA
31990986 TAT
1 TAT
31990989 TAAAATAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (18 bp):
TATATTATAAAGTTAATA
Found at i:31992203 original size:78 final size:78
Alignment explanation
Indices: 31992090--31992280 Score: 221
Period size: 78 Copynumber: 2.5 Consensus size: 78
31992080 ATATTGAGTA
* * *
31992090 TAAGTATGAAATTATATATG-TATATGTTAAATTCGAAAATGTATGTGTATACAAGTATAAGTAC
1 TAAGTATGAAATTATATATGATATATGTTAGATTCGAAAATGTATATATATACAAGTATAAGTAC
31992154 TTGT-TTCG-AATG
66 TTGTATT-GAAATG
* * * * *
31992166 TAAGTATAAAATTATATATGTATATATGTTAGATTCGAATATGTATATATGTACATGTATAAGTT
1 TAAGTATGAAATTATATATG-ATATATGTTAGATTCGAAAATGTATATATATACAAGTATAAGTA
*
31992231 TTTGTATTGAAATG
65 CTTGTATTGAAATG
** *
31992245 -GGGTATGAAATTATATA-GATATATGTGAGATTCGAA
1 TAAGTATGAAATTATATATGATATATGTTAGATTCGAA
31992281 TGTTAAATGT
Statistics
Matches: 98, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
76 36 0.37
77 1 0.01
78 55 0.56
79 6 0.06
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.40
Consensus pattern (78 bp):
TAAGTATGAAATTATATATGATATATGTTAGATTCGAAAATGTATATATATACAAGTATAAGTAC
TTGTATTGAAATG
Found at i:31995984 original size:14 final size:15
Alignment explanation
Indices: 31995960--31995994 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
31995950 TATATATATT
31995960 ACCATATAAATACTA
1 ACCATATAAATACTA
31995975 ACCATA-AAATACTA
1 ACCATATAAATACTA
31995989 ATCCAT
1 A-CCAT
31995995 GATTAAAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (15 bp):
ACCATATAAATACTA
Found at i:31996693 original size:41 final size:41
Alignment explanation
Indices: 31996648--31996767 Score: 102
Period size: 41 Copynumber: 2.9 Consensus size: 41
31996638 TAAAACATAG
*
31996648 AGCCCTATATAAAACACCGGCATAAAGCCTGCTAGGCACAA
1 AGCCCTATATAATACACCGGCATAAAGCCTGCTAGGCACAA
* * * * **
31996689 AGCCCGAT-TCATTTCACCGGCACAAAGCCTGCTA-GCTATTA
1 AGCCCTATAT-AATACACCGGCATAAAGCCTGCTAGGC-ACAA
* * *
31996730 AG-CCTGAAATAATCCACCGGCATCAAGCCTGCTAGGCA
1 AGCCCT-ATATAATACACCGGCATAAAGCCTGCTAGGCA
31996768 TTAAGCCTGA
Statistics
Matches: 61, Mismatches: 13, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
40 5 0.08
41 53 0.87
42 3 0.05
ACGTcount: A:0.33, C:0.31, G:0.18, T:0.18
Consensus pattern (41 bp):
AGCCCTATATAATACACCGGCATAAAGCCTGCTAGGCACAA
Found at i:31996771 original size:41 final size:42
Alignment explanation
Indices: 31996662--31996779 Score: 127
Period size: 41 Copynumber: 2.9 Consensus size: 42
31996652 CTATATAAAA
* ** * * * *
31996662 CACCGGCATAAAGCCTGCTAGGCACAAAGCCCG-ATTCATTT
1 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATCAATC
31996703 CACCGGCA-CAAAGCCTGCTA-GCTATTAAGCCTGAAAT-AATC
1 CACCGGCATC-AAGCCTGCTAGGC-ATTAAGCCTGAAATCAATC
31996744 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAA
1 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAA
31996780 ATCTCATATA
Statistics
Matches: 65, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
40 2 0.03
41 58 0.89
42 5 0.08
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.19
Consensus pattern (42 bp):
CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATCAATC
Found at i:31997012 original size:64 final size:63
Alignment explanation
Indices: 31996894--31997074 Score: 262
Period size: 64 Copynumber: 2.9 Consensus size: 63
31996884 GCAAACAAAC
*
31996894 ATTCGAACCACATATGT-AT-AATTTACA-ACATTAAAATTCAGCTCAAAGAA-TTTGTAACCTA
1 ATTCGAACCACATATGTAATAAAATT-CATACATT-AAATTCAGCTC-AAGAACTTTGTAACCTA
31996955 T
63 T
31996956 ATTCGAACCACATATGTAAGTAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
1 ATTCGAACCACATATGTAA-TAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
* *
31997020 ATTTGAACCACATATGTATATAAAATTCATACATTAAATACAGCTCAAGAACTTT
1 ATTCGAACCACATATGTA-ATAAAATTCATACATTAAATTCAGCTCAAGAACTTT
31997075 AAATATATAT
Statistics
Matches: 110, Mismatches: 3, Indels: 10
0.89 0.02 0.08
Matches are distributed among these distances:
62 17 0.15
63 6 0.05
64 77 0.70
65 10 0.09
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (63 bp):
ATTCGAACCACATATGTAATAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
Found at i:31998624 original size:41 final size:41
Alignment explanation
Indices: 31998566--31998713 Score: 161
Period size: 41 Copynumber: 3.6 Consensus size: 41
31998556 TTTAAAACCT
* * *
31998566 AGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAGTCG
1 AGCAGGCTAAGTGCCGGTGATCTGAATCAAGCTATAAGCCG
* * * *
31998607 AGCAGGCTAAGTACCGGTTATCTGAATCAAGTTATAAGCCT
1 AGCAGGCTAAGTGCCGGTGATCTGAATCAAGCTATAAGCCG
* * * * *
31998648 AGCAGGCTGAGTGCCGGTGATCAGAATCAATCTTTAAGCCT
1 AGCAGGCTAAGTGCCGGTGATCTGAATCAAGCTATAAGCCG
**
31998689 AATAGGCTAAGTGCCGGTGAATCTG
1 AGCAGGCTAAGTGCCGGTG-ATCTG
31998714 TTTAAATTAA
Statistics
Matches: 88, Mismatches: 18, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
41 84 0.95
42 4 0.05
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (41 bp):
AGCAGGCTAAGTGCCGGTGATCTGAATCAAGCTATAAGCCG
Found at i:31998949 original size:34 final size:35
Alignment explanation
Indices: 31998880--31998953 Score: 89
Period size: 34 Copynumber: 2.1 Consensus size: 35
31998870 TTGTTGGATA
* *
31998880 TATATATGTCTGCATTCGGCATATATGGATTATAAG
1 TATATATG-CTGCATTCGGCACATATAGATTATAAG
*
31998916 TATATATG-TGCATTCGGCACATGTAG-TTGATAAG
1 TATATATGCTGCATTCGGCACATATAGATT-ATAAG
31998950 TATA
1 TATA
31998954 AATATATGCT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
33 2 0.06
34 24 0.71
36 8 0.24
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (35 bp):
TATATATGCTGCATTCGGCACATATAGATTATAAG
Found at i:32005813 original size:23 final size:22
Alignment explanation
Indices: 32005770--32005826 Score: 71
Period size: 23 Copynumber: 2.6 Consensus size: 22
32005760 TTAAAGCAAA
**
32005770 GAATATAAAATAATTTTAGAAT
1 GAATATAAAATAATTGCAGAAT
32005792 GAATGATAAAATAATTGCAGAAT
1 GAAT-ATAAAATAATTGCAGAAT
*
32005815 -AATTTAAAATAA
1 GAATATAAAATAA
32005827 ATAATTTACA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 8 0.26
22 7 0.23
23 16 0.52
ACGTcount: A:0.56, C:0.02, G:0.11, T:0.32
Consensus pattern (22 bp):
GAATATAAAATAATTGCAGAAT
Found at i:32006035 original size:22 final size:22
Alignment explanation
Indices: 32005983--32006037 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
32005973 TATATACAAA
*
32005983 AGTTTAAAATAACTAAATAAAGT
1 AGTTTAAAATAAC-AAATAAAAT
* *
32006006 ACTGTAAAATAGA-AAATAAAAT
1 AGTTTAAAATA-ACAAATAAAAT
32006028 AGTTTAAAAT
1 AGTTTAAAAT
32006038 GTAGAATATA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
22 16 0.62
23 9 0.35
24 1 0.04
ACGTcount: A:0.58, C:0.04, G:0.09, T:0.29
Consensus pattern (22 bp):
AGTTTAAAATAACAAATAAAAT
Found at i:32013339 original size:12 final size:12
Alignment explanation
Indices: 32013322--32013347 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
32013312 CTTATTATCA
32013322 TTATTTTATTAT
1 TTATTTTATTAT
32013334 TTATTTTATTAT
1 TTATTTTATTAT
32013346 TT
1 TT
32013348 TCGACACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (12 bp):
TTATTTTATTAT
Found at i:32017488 original size:18 final size:19
Alignment explanation
Indices: 32017452--32017490 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
32017442 GTGACCCCTA
* *
32017452 TTTTCTAAATTTTCATATT
1 TTTTCGAAACTTTCATATT
32017471 TTTTCGAAACTTTC-TATT
1 TTTTCGAAACTTTCATATT
32017489 TT
1 TT
32017491 GCTTTGTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.23, C:0.13, G:0.03, T:0.62
Consensus pattern (19 bp):
TTTTCGAAACTTTCATATT
Found at i:32020204 original size:27 final size:27
Alignment explanation
Indices: 32020149--32020201 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
32020139 TACATGATGA
* *
32020149 AATTAAATAATAATATATGATAAAAAT
1 AATTAAATAATAATACATAATAAAAAT
*
32020176 AATTAAAATAATAGTACATAATAAAA
1 AATT-AAATAATAATACATAATAAAA
32020202 TAAAATAATG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 4 0.18
28 18 0.82
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (27 bp):
AATTAAATAATAATACATAATAAAAAT
Found at i:32020208 original size:51 final size:50
Alignment explanation
Indices: 32020120--32020223 Score: 122
Period size: 51 Copynumber: 2.1 Consensus size: 50
32020110 GGATTAATAT
* * *
32020120 AAATATATATAAAAAATAATACATGATGAAATTAAATAATAATATATGATAA
1 AAATATATATAAAAAATAATACATAATAAAATAAAATAAT-ATATAT-ATAA
* *
32020172 AAATA-AT-TAAAATAATAGTACATAATAAAATAAAATAATGTATATATAA
1 AAATATATATAAAA-AATAATACATAATAAAATAAAATAATATATATATAA
32020221 AAA
1 AAA
32020224 GGTAAACAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
49 7 0.15
50 10 0.22
51 24 0.52
52 5 0.11
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (50 bp):
AAATATATATAAAAAATAATACATAATAAAATAAAATAATATATATATAA
Found at i:32020209 original size:23 final size:21
Alignment explanation
Indices: 32020179--32020222 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 21
32020169 TAAAAATAAT
32020179 TAAAATAATAGTACATAATAAAA
1 TAAAATAAT-GTACAT-ATAAAA
*
32020202 TAAAATAATGTATATATAAAA
1 TAAAATAATGTACATATAAAA
32020223 AGGTAAACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 6 0.30
22 5 0.25
23 9 0.45
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.30
Consensus pattern (21 bp):
TAAAATAATGTACATATAAAA
Found at i:32020257 original size:3 final size:3
Alignment explanation
Indices: 32020249--32020304 Score: 51
Period size: 3 Copynumber: 18.7 Consensus size: 3
32020239 AAACTAATAC
* * * * *
32020249 AAT AAT AAT ACCT -AT AAT AAT AAC AAC AAC AAT AAT AAT AGT AAT
1 AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
32020294 AAT AAT AAT AA
1 AAT AAT AAT AA
32020305 ATTAATTAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
2 1 0.02
3 43 0.96
4 1 0.02
ACGTcount: A:0.62, C:0.09, G:0.02, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:32020901 original size:15 final size:15
Alignment explanation
Indices: 32020878--32020916 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
32020868 TACTCAAGTG
*
32020878 AAAATAAAAGAAAAA-
1 AAAAGAAAA-AAAAAC
32020893 AAAAGAAAAAAAAAC
1 AAAAGAAAAAAAAAC
32020908 AAAAGAAAA
1 AAAAGAAAA
32020917 CTAGAGAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 5 0.23
15 17 0.77
ACGTcount: A:0.87, C:0.03, G:0.08, T:0.03
Consensus pattern (15 bp):
AAAAGAAAAAAAAAC
Found at i:32020917 original size:10 final size:10
Alignment explanation
Indices: 32020877--32020916 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
32020867 TTACTCAAGT
*
32020877 GAAAATAAAA
1 GAAAAAAAAA
32020887 GAAAAAAAAA
1 GAAAAAAAAA
32020897 GAAAAAAAAA
1 GAAAAAAAAA
*
32020907 CAAAAGAAAA
1 GAAAA-AAAA
32020917 CTAGAGAAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
10 23 0.85
11 4 0.15
ACGTcount: A:0.85, C:0.03, G:0.10, T:0.03
Consensus pattern (10 bp):
GAAAAAAAAA
Found at i:32021337 original size:13 final size:13
Alignment explanation
Indices: 32021321--32021345 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32021311 TGGGCCTGTA
32021321 ATAATGGACTTTG
1 ATAATGGACTTTG
32021334 ATAATGGACTTT
1 ATAATGGACTTT
32021346 TATTTTTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (13 bp):
ATAATGGACTTTG
Found at i:32026713 original size:102 final size:113
Alignment explanation
Indices: 32026561--32027098 Score: 670
Period size: 119 Copynumber: 4.7 Consensus size: 113
32026551 TTAATCATAT
*
32026561 TTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTT-ATAAAATTCTTAATATT
*
32026626 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
65 AAATATTCTTATA-GAA-TTAC---AATAATAATA-ATAATACTATAAAATATAA
32026681 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTATAAAATTCTTAATATTA
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTATAAAATTCTTAATATTA
*
32026746 AATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
66 AATATTCTTATA-GAA-TTAC---AATAATAATA-ATAATACTATAAAATATAA
*
32026800 TTTAAAATAATTATTATCAAATATAATTTAATAAAAATATATAATTTATAAAATTCTTAATATTA
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTATAAAATTCTTAATATTA
*
32026865 AATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
66 AATATTCTTATA-GAA-TTAC---AATAATAATA-ATAATACTATAAAATATAA
* * *
32026919 TTTAAAATAATTATTATTAAATATAATTTAATAAAATTCT-TAATATTA-AATATTCTT-ATA-T
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAAT-TTATAAAATTCTTAATATT
* *
32026980 GAAT-TTAC-TA-A-AA-T-C-ATAAT-AT-ATAATACTATAAAACATAA
65 AAATATT-CTTATAGAATTACAATAATAATAATAATACTATAAAATATAA
** *
32027021 CCTAAAATAATAATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTT-ATAAAATTCTTAATATT
32027086 AAATATTCTTATA
65 AAATATTCTTATA
32027099 TGAGTTTACT
Statistics
Matches: 392, Mismatches: 16, Indels: 32
0.89 0.04 0.07
Matches are distributed among these distances:
102 55 0.14
103 5 0.01
104 10 0.03
105 7 0.02
106 5 0.01
107 4 0.01
108 1 0.00
109 1 0.00
110 1 0.00
112 2 0.01
114 1 0.00
115 4 0.01
116 5 0.01
117 3 0.01
118 12 0.03
119 230 0.59
120 46 0.12
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.42
Consensus pattern (113 bp):
TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTATAAAATTCTTAATATTA
AATATTCTTATAGAATTACAATAATAATAATAATACTATAAAATATAA
Found at i:32026774 original size:119 final size:119
Alignment explanation
Indices: 32026561--32026954 Score: 761
Period size: 119 Copynumber: 3.3 Consensus size: 119
32026551 TTAATCATAT
*
32026561 TTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTT-ATAAAATTCTTAATATT
32026626 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
65 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
32026681 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTATAAAATTCTTAATATTA
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTATAAAATTCTTAATATTA
32026746 AATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
66 AATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
*
32026800 TTTAAAATAATTATTATCAAATATAATTTAATAAAAATATATAATTTATAAAATTCTTAATATTA
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTATAAAATTCTTAATATTA
32026865 AATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
66 AATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
32026919 TTTAAAATAATTATTATTAAATATAATTTAATAAAA
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAA
32026955 TTCTTAATAT
Statistics
Matches: 271, Mismatches: 3, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
119 225 0.83
120 46 0.17
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (119 bp):
TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTATAAAATTCTTAATATTA
AATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:32026955 original size:221 final size:220
Alignment explanation
Indices: 32026719--32027140 Score: 756
Period size: 221 Copynumber: 1.9 Consensus size: 220
32026709 TAATAAAAAT
32026719 ATATAATTTATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATA
1 ATATAATTTATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATA
* ** *
32026784 ATACTATAAAATATAATTTAAAATAATTATTATCAAATATAATTTAATAAAAATATATAATTT-A
66 ATACTATAAAACATAACCTAAAATAATAATTATCAAATATAATTTAATAAAAATATATAATTTAA
*
32026848 TAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAA
131 TAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATAATATAAA
32026913 ATATAATTTAAAATAATTATTATTAA
196 A-ATAATTTAAAATAATTATTATTAA
32026939 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATAT
1 ATATAATTT-ATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATAT
*
32027004 AATACTATAAAACATAACCTAAAATAATAATTATTAAATATAATTTAATAAAAATATATAATTTA
65 AATACTATAAAACATAACCTAAAATAATAATTATCAAATATAATTTAATAAAAATATATAATTTA
*
32027069 ATAAAATTCTTAATATTAAATATTCTTATATGAGTTTACTAAAATCATAATATATAATAATATAA
130 ATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATAATATAA
32027134 AAATAAT
195 AAATAAT
32027141 ATATAATCTA
Statistics
Matches: 193, Mismatches: 7, Indels: 3
0.95 0.03 0.01
Matches are distributed among these distances:
220 9 0.05
221 119 0.62
222 65 0.34
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.41
Consensus pattern (220 bp):
ATATAATTTATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATA
ATACTATAAAACATAACCTAAAATAATAATTATCAAATATAATTTAATAAAAATATATAATTTAA
TAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATAATATAAA
AATAATTTAAAATAATTATTATTAA
Found at i:32027014 original size:61 final size:61
Alignment explanation
Indices: 32026949--32027135 Score: 184
Period size: 61 Copynumber: 3.1 Consensus size: 61
32026939 ATATAATTTA
*
32026949 ATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACT
1 ATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATAAT
* ** * ** * * * ** * * *
32027010 ATAAAA--CATAACCTAAAATAATAATTAT-TAAATATAATTTAATAAAAATATATAAT-TT
1 ATAAAATTCTTAATATTAAAT-ATTCTTATATGAATTTACTAAAATCATAATATATAATAAT
*
32027068 AATAAAATTCTTAATATTAAATATTCTTATATGAGTTTACTAAAATCATAATATATAATAAT
1 -ATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATAAT
32027130 ATAAAA
1 ATAAAA
32027136 ATAATATATA
Statistics
Matches: 91, Mismatches: 29, Indels: 12
0.69 0.22 0.09
Matches are distributed among these distances:
58 1 0.01
59 36 0.40
60 12 0.13
61 41 0.45
62 1 0.01
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.40
Consensus pattern (61 bp):
ATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATAAT
Found at i:32027122 original size:59 final size:59
Alignment explanation
Indices: 32026938--32027122 Score: 177
Period size: 59 Copynumber: 3.1 Consensus size: 59
32026928 ATTATTATTA
32026938 AATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCAT
1 AATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCAT
* * ** * *
32026997 AATAT-ATAATACTATAAAA--CATAACCTAAAATAATAATTATTAAATAT-AATTTAATAAAA-
1 AATATAAT-TTA--ATAAAATTCTTAA--TATTA-AAT-ATTCTT--ATATGAATTTACTAAAAT
32027057 -AT
57 CAT
*
32027059 -ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAGTTTACTAAAATCAT
1 AATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCAT
32027117 AATATA
1 AATATA
32027123 TAATAATATA
Statistics
Matches: 97, Mismatches: 13, Indels: 32
0.68 0.09 0.23
Matches are distributed among these distances:
55 4 0.04
56 10 0.10
57 5 0.05
58 7 0.07
59 25 0.26
61 19 0.20
62 7 0.07
63 5 0.05
64 11 0.11
65 4 0.04
ACGTcount: A:0.51, C:0.06, G:0.02, T:0.41
Consensus pattern (59 bp):
AATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCAT
Found at i:32028603 original size:49 final size:49
Alignment explanation
Indices: 32028531--32028634 Score: 181
Period size: 49 Copynumber: 2.1 Consensus size: 49
32028521 AAAAAAAAAC
* * *
32028531 AAATTAAAATTAAGTTTAATATCATGAATCAAAAGGTGAACACTTTATA
1 AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACACTTTATA
32028580 AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACACTTTATA
1 AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACACTTTATA
32028629 AAATTA
1 AAATTA
32028635 TAACACATGA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 52 1.00
ACGTcount: A:0.50, C:0.11, G:0.08, T:0.32
Consensus pattern (49 bp):
AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACACTTTATA
Found at i:32030809 original size:33 final size:33
Alignment explanation
Indices: 32030766--32030831 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
32030756 AAATTAAAAT
32030766 TTGTACGTATATGTATAATTGAGCTAAAATTAA
1 TTGTACGTATATGTATAATTGAGCTAAAATTAA
*
32030799 TTGTAGGTATATGTATAATTGAGCTAAAATTAA
1 TTGTACGTATATGTATAATTGAGCTAAAATTAA
32030832 AATTTCATCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.39, C:0.05, G:0.17, T:0.39
Consensus pattern (33 bp):
TTGTACGTATATGTATAATTGAGCTAAAATTAA
Found at i:32030819 original size:18 final size:18
Alignment explanation
Indices: 32030766--32030819 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 18
32030756 AAATTAAAAT
*
32030766 TTGTACGTATATGTATAA
1 TTGTAGGTATATGTATAA
* **
32030784 TTG-AGCTA-AAAT-TAA
1 TTGTAGGTATATGTATAA
32030799 TTGTAGGTATATGTATAA
1 TTGTAGGTATATGTATAA
32030817 TTG
1 TTG
32030820 AGCTAAAATT
Statistics
Matches: 26, Mismatches: 7, Indels: 6
0.67 0.18 0.15
Matches are distributed among these distances:
15 6 0.23
16 6 0.23
17 5 0.19
18 9 0.35
ACGTcount: A:0.35, C:0.04, G:0.19, T:0.43
Consensus pattern (18 bp):
TTGTAGGTATATGTATAA
Found at i:32031326 original size:14 final size:15
Alignment explanation
Indices: 32031293--32031328 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
32031283 AAAATTAGTT
32031293 AAAATAAAATCTTGG
1 AAAATAAAATCTTGG
*
32031308 AAAATTAAATCTT-G
1 AAAATAAAATCTTGG
32031322 AAAATAA
1 AAAATAA
32031329 TTGAAAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 7 0.37
15 12 0.63
ACGTcount: A:0.58, C:0.06, G:0.08, T:0.28
Consensus pattern (15 bp):
AAAATAAAATCTTGG
Found at i:32032788 original size:20 final size:20
Alignment explanation
Indices: 32032763--32032807 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
32032753 AACACAAATG
32032763 GAAAACATCAACTTAATACA
1 GAAAACATCAACTTAATACA
32032783 GAAAACATCAACTTAATACA
1 GAAAACATCAACTTAATACA
32032803 -AAAAC
1 GAAAAC
32032808 CAAAACATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.58, C:0.20, G:0.04, T:0.18
Consensus pattern (20 bp):
GAAAACATCAACTTAATACA
Found at i:32045590 original size:50 final size:50
Alignment explanation
Indices: 32045478--32045663 Score: 198
Period size: 50 Copynumber: 3.7 Consensus size: 50
32045468 GGTAAAGAGA
* * **
32045478 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAAC
** * *
32045528 TCCCCCGAAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAAC
* * ** **
32045578 TCTCATGTAAGACCATATCTGGGGTATGGCATTGGCA--G-TACAAGAAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAG-AAC
*
32045626 ATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 -TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
32045664 TGTTATTATC
Statistics
Matches: 111, Mismatches: 23, Indels: 5
0.80 0.17 0.04
Matches are distributed among these distances:
47 4 0.04
48 4 0.04
49 32 0.29
50 71 0.64
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAAC
Found at i:32050388 original size:24 final size:24
Alignment explanation
Indices: 32050341--32050390 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
32050331 CACTAAAAAC
* *
32050341 ATTAAAATAAATGTTTTCCATTAA
1 ATTAAAATAAATATTTTACATTAA
32050365 ATTAAAATAAATATTTATAC-TTAA
1 ATTAAAATAAATATTT-TACATTAA
32050389 AT
1 AT
32050391 AACACTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 21 0.91
25 2 0.09
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (24 bp):
ATTAAAATAAATATTTTACATTAA
Found at i:32057729 original size:4 final size:4
Alignment explanation
Indices: 32057720--32057758 Score: 69
Period size: 4 Copynumber: 9.8 Consensus size: 4
32057710 AGATGCTCGT
*
32057720 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
32057759 AAAAGCATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.49, C:0.23, G:0.03, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:32057833 original size:4 final size:4
Alignment explanation
Indices: 32057824--32057865 Score: 75
Period size: 4 Copynumber: 10.5 Consensus size: 4
32057814 TGCCTAAGAG
*
32057824 ATAC ATAC ATAC ATAC ATAC ATAT ATAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
32057866 TTAGGGGTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (4 bp):
ATAC
Found at i:32058112 original size:9 final size:9
Alignment explanation
Indices: 32058095--32058124 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
32058085 TGAAGCAAAG
32058095 TTTTT-ATT
1 TTTTTAATT
32058103 TTTTTAATT
1 TTTTTAATT
32058112 TTTTTAATT
1 TTTTTAATT
32058121 TTTT
1 TTTT
32058125 ACGGCATCTG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 5 0.24
9 16 0.76
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTTAATT
Found at i:32058479 original size:16 final size:17
Alignment explanation
Indices: 32058449--32058480 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
32058439 GTTATCTGAT
32058449 AATTAAATATTTAAAAA
1 AATTAAATATTTAAAAA
32058466 AATTAAAT-TTTAAAA
1 AATTAAATATTTAAAA
32058481 TCTAAAATCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
AATTAAATATTTAAAAA
Found at i:32063288 original size:9 final size:9
Alignment explanation
Indices: 32063274--32063310 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
32063264 TATAGTTTGA
32063274 TATTCGAAT
1 TATTCGAAT
32063283 TATTCGAAT
1 TATTCGAAT
*
32063292 TATTCGAGT
1 TATTCGAAT
32063301 TATTCGAAT
1 TATTCGAAT
32063310 T
1 T
32063311 CAAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:32063381 original size:9 final size:9
Alignment explanation
Indices: 32063364--32063394 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
32063354 TCGAGTTGAT
32063364 TCGAATAAC
1 TCGAATAAC
*
32063373 TCGATTAAC
1 TCGAATAAC
32063382 TCGAATAAC
1 TCGAATAAC
32063391 TCGA
1 TCGA
32063395 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:32082127 original size:30 final size:30
Alignment explanation
Indices: 32082093--32082183 Score: 137
Period size: 30 Copynumber: 3.0 Consensus size: 30
32082083 TTCCTTATCT
*
32082093 TGAACTTCGATGCTATTCGTTTCCTTGCCA
1 TGAACTTCGACGCTATTCGTTTCCTTGCCA
*
32082123 TGAACTTCGACGCTATTCGTTTCCGTGCCA
1 TGAACTTCGACGCTATTCGTTTCCTTGCCA
* * *
32082153 TGAACTTCAACACTATTTGTTTCCTTGCCA
1 TGAACTTCGACGCTATTCGTTTCCTTGCCA
32082183 T
1 T
32082184 TTGTTTCCTT
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 55 1.00
ACGTcount: A:0.19, C:0.27, G:0.15, T:0.38
Consensus pattern (30 bp):
TGAACTTCGACGCTATTCGTTTCCTTGCCA
Found at i:32102101 original size:153 final size:153
Alignment explanation
Indices: 32101823--32102119 Score: 558
Period size: 153 Copynumber: 1.9 Consensus size: 153
32101813 GAAATTTAGG
*
32101823 GTTGAGGGATAGCGGTCGATGGCAGCATTTGGTAACCGGTGGCAACAAAAGTTCATCAGATTTTG
1 GTTGAGGGATAGCGGTCGATGGCAGCATTTGGTAACCGGTGGCAACAAAAGTTCATCAGAGTTTG
*
32101888 GATTGCCATGGTGATTTTTTATAATTATTTTAAGGGTCAGTTCTTCATTACTTTAAAAAAATACT
66 GATTGCCATGGTGATTTTTTATAATTATTTTAAGGGTCAGTTCTTCATTACTTAAAAAAAATACT
32101953 TCTGACTCCAAAAGTTCATCAGA
131 TCTGACTCCAAAAGTTCATCAGA
*
32101976 GTTGAGGGATGGCGGTCGATGGCAGCATTTGGTAACCGGTGGCAACAAAAGTTCATCAGAGTTTG
1 GTTGAGGGATAGCGGTCGATGGCAGCATTTGGTAACCGGTGGCAACAAAAGTTCATCAGAGTTTG
*
32102041 GATTGCCATGGTGATTTTTTATAATTATTTTAAGGGTCTGTTCTTCATTACTTAAAAAAAATACT
66 GATTGCCATGGTGATTTTTTATAATTATTTTAAGGGTCAGTTCTTCATTACTTAAAAAAAATACT
32102106 TCTGACTCCAAAAG
131 TCTGACTCCAAAAG
32102120 CATTTTTGAA
Statistics
Matches: 140, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
153 140 1.00
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.34
Consensus pattern (153 bp):
GTTGAGGGATAGCGGTCGATGGCAGCATTTGGTAACCGGTGGCAACAAAAGTTCATCAGAGTTTG
GATTGCCATGGTGATTTTTTATAATTATTTTAAGGGTCAGTTCTTCATTACTTAAAAAAAATACT
TCTGACTCCAAAAGTTCATCAGA
Found at i:32102670 original size:13 final size:13
Alignment explanation
Indices: 32102654--32102714 Score: 61
Period size: 13 Copynumber: 4.7 Consensus size: 13
32102644 TAAGCCAAAT
32102654 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
*
32102667 TTTTCAAAAGTAC
1 TTTTCAAAAGCAC
*
32102680 TTTTTCACAA-CAC
1 -TTTTCAAAAGCAC
* **
32102693 TTTTTAAAAATAC
1 TTTTCAAAAGCAC
32102706 TTTTCAAAA
1 TTTTCAAAA
32102715 ACATTACCAA
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
12 7 0.18
13 24 0.62
14 8 0.21
ACGTcount: A:0.39, C:0.18, G:0.03, T:0.39
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:32102683 original size:26 final size:26
Alignment explanation
Indices: 32102653--32102714 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
32102643 TTAAGCCAAA
*
32102653 TTTTTCAAAAGCACTTTTCAAAAGTAC
1 TTTTTCAAAA-CACTTTTCAAAAATAC
* *
32102680 TTTTTCACAACACTTTTTAAAAATAC
1 TTTTTCAAAACACTTTTCAAAAATAC
32102706 -TTTTCAAAA
1 TTTTTCAAAA
32102715 ACATTACCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 8 0.26
26 14 0.45
27 9 0.29
ACGTcount: A:0.39, C:0.18, G:0.03, T:0.40
Consensus pattern (26 bp):
TTTTTCAAAACACTTTTCAAAAATAC
Found at i:32103985 original size:18 final size:17
Alignment explanation
Indices: 32103962--32104015 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 17
32103952 TATTATTTTA
*
32103962 AATTTTATAAATATATTT
1 AATTTTAAAAAT-TATTT
32103980 AATTTTAAAAATTATTTT
1 AATTTTAAAAATTA-TTT
*
32103998 GAATTTTTAAAATTATTT
1 -AATTTTAAAAATTATTT
32104016 TTTTTGTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 2 0.06
18 17 0.53
19 13 0.41
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.56
Consensus pattern (17 bp):
AATTTTAAAAATTATTT
Found at i:32104004 original size:19 final size:18
Alignment explanation
Indices: 32103953--32104016 Score: 76
Period size: 19 Copynumber: 3.4 Consensus size: 18
32103943 TCCCAACATT
*
32103953 ATTATTTTAAATTTTATAA
1 ATTATTTT-AATTTTAAAA
32103972 A-TATATTTAATTTTAAAA
1 ATTAT-TTTAATTTTAAAA
*
32103990 ATTATTTTGAATTTTTAAA
1 ATTATTTT-AATTTTAAAA
32104009 ATTATTTT
1 ATTATTTT
32104017 TTTTGTTTTG
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
18 16 0.40
19 24 0.60
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (18 bp):
ATTATTTTAATTTTAAAA
Found at i:32115211 original size:7 final size:7
Alignment explanation
Indices: 32115187--32115223 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
32115177 TTTTACACAC
32115187 ATCAACT
1 ATCAACT
* *
32115194 TTCAGCT
1 ATCAACT
32115201 ATCAACT
1 ATCAACT
32115208 ATCAACT
1 ATCAACT
32115215 ATCAACT
1 ATCAACT
32115222 AT
1 AT
32115224 ATTTTATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.38, C:0.27, G:0.03, T:0.32
Consensus pattern (7 bp):
ATCAACT
Found at i:32115791 original size:21 final size:22
Alignment explanation
Indices: 32115741--32115791 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 22
32115731 AATTTATGTA
**
32115741 ATTATATTTGTTTATATGATTT
1 ATTATATTAATTTATATGATTT
* *
32115763 -TTAAATTAATTTATAT-TTTT
1 ATTATATTAATTTATATGATTT
32115783 ATTATATTA
1 ATTATATTA
32115792 GCTTTTAATG
Statistics
Matches: 23, Mismatches: 5, Indels: 3
0.74 0.16 0.10
Matches are distributed among these distances:
20 3 0.13
21 20 0.87
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (22 bp):
ATTATATTAATTTATATGATTT
Found at i:32118257 original size:63 final size:63
Alignment explanation
Indices: 32118158--32118286 Score: 224
Period size: 63 Copynumber: 2.0 Consensus size: 63
32118148 CAACCTGATT
* *
32118158 TATAACTTAAATTTGGTAATTCAAACTCTATTAAGATGTGCCTCATT-CTCGATGTGATAAGAA
1 TATAACTTAAATTTAGTAATTCAAACTCTATTAAGATGCGCCTCATTCCT-GATGTGATAAGAA
32118221 TATAACTTAAATTTAGTAATTCAAACTCTATTAAGATGCGCCTCATTCCTGATGTGATAAGAA
1 TATAACTTAAATTTAGTAATTCAAACTCTATTAAGATGCGCCTCATTCCTGATGTGATAAGAA
32118284 TAT
1 TAT
32118287 CTCCATGTGA
Statistics
Matches: 63, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
63 61 0.97
64 2 0.03
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (63 bp):
TATAACTTAAATTTAGTAATTCAAACTCTATTAAGATGCGCCTCATTCCTGATGTGATAAGAA
Found at i:32119416 original size:16 final size:16
Alignment explanation
Indices: 32119395--32119450 Score: 76
Period size: 16 Copynumber: 3.5 Consensus size: 16
32119385 TGAATTACTG
* *
32119395 ATTACAGTTTTATTCC
1 ATTACAGCTCTATTCC
*
32119411 ATTACAACTCTATTCC
1 ATTACAGCTCTATTCC
*
32119427 ATTATAGCTCTATTCC
1 ATTACAGCTCTATTCC
32119443 ATTACAGC
1 ATTACAGC
32119451 GAACCAAACG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.29, C:0.25, G:0.05, T:0.41
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:32123504 original size:6 final size:6
Alignment explanation
Indices: 32123485--32123530 Score: 65
Period size: 6 Copynumber: 7.7 Consensus size: 6
32123475 TCTAGATATT
* * *
32123485 TGTATC TGTTTC TGCATC TGTATC TGTATC TGTATC CGTATC TGTA
1 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTA
32123531 CCTATAAAAG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.15, C:0.20, G:0.17, T:0.48
Consensus pattern (6 bp):
TGTATC
Found at i:32130816 original size:23 final size:23
Alignment explanation
Indices: 32130790--32130888 Score: 144
Period size: 23 Copynumber: 4.3 Consensus size: 23
32130780 ATAAGTGCCA
32130790 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
32130813 CACTGATATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
32130836 CACTGAAATGTAGTCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* * *
32130859 CACTGAAATGTAGTCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
32130882 CACTGAT
1 CACTGAT
32130889 CAATAACACT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 70 1.00
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:32130857 original size:46 final size:46
Alignment explanation
Indices: 32130790--32130887 Score: 160
Period size: 46 Copynumber: 2.1 Consensus size: 46
32130780 ATAAGTGCCA
* *
32130790 CACTGATATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGAAATGTAGCCGTAGCTAC
* *
32130836 CACTGAAATGTAGTCGAAGCTACCACTGAAATGTAGTCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGAAATGTAGCCGTAGCTAC
32130882 CACTGA
1 CACTGA
32130888 TCAATAACAC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.23
Consensus pattern (46 bp):
CACTGAAATGTAGCCGAAGCTACCACTGAAATGTAGCCGTAGCTAC
Found at i:32136767 original size:28 final size:31
Alignment explanation
Indices: 32136709--32136769 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 31
32136699 ACGACATTCG
*
32136709 TATATTTATTGAATCCATTTTACTTTGATAAA
1 TATATTTATTGAATCAATTTTAC-TTGATAAA
*
32136741 TATATTTTTTGAA-CAATTTTA-TT-ATAAA
1 TATATTTATTGAATCAATTTTACTTGATAAA
32136769 T
1 T
32136770 TCTAATTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
28 6 0.22
29 2 0.07
31 7 0.26
32 12 0.44
ACGTcount: A:0.36, C:0.07, G:0.05, T:0.52
Consensus pattern (31 bp):
TATATTTATTGAATCAATTTTACTTGATAAA
Found at i:32144466 original size:4 final size:4
Alignment explanation
Indices: 32144459--32144511 Score: 54
Period size: 4 Copynumber: 13.2 Consensus size: 4
32144449 TATATATACT
* * * *
32144459 TTAA TTAA TTCA TTAA TCAT TTAA TTAA TCTAA TTAA -TAT TTAA TTAA
1 TTAA TTAA TTAA TTAA TTAA TTAA TTAA T-TAA TTAA TTAA TTAA TTAA
32144507 TTAA T
1 TTAA T
32144512 CTTAATCTCA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
3 2 0.05
4 33 0.85
5 4 0.10
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (4 bp):
TTAA
Found at i:32144483 original size:20 final size:19
Alignment explanation
Indices: 32144458--32144511 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 19
32144448 ATATATATAC
*
32144458 TTTAATTAATTCATTAATCA
1 TTTAATTAATTAATTAAT-A
32144478 TTTAATTAATCTAATTAATA
1 TTTAATTAAT-TAATTAATA
32144498 TTTAATTAATTAAT
1 TTTAATTAATTAAT
32144512 CTTAATCTCA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
19 4 0.12
20 21 0.66
21 7 0.22
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.52
Consensus pattern (19 bp):
TTTAATTAATTAATTAATA
Found at i:32144487 original size:24 final size:23
Alignment explanation
Indices: 32144459--32144518 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 23
32144449 TATATATACT
32144459 TTAATTAATTCATTAATCATTTAA
1 TTAATTAA-TCATTAATCATTTAA
32144483 TTAATCT-A--ATTAAT-ATTTAA
1 TTAAT-TAATCATTAATCATTTAA
32144503 TTAATTAATC-TTAATC
1 TTAATTAATCATTAATC
32144519 TCAATAAAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 12
0.72 0.00 0.28
Matches are distributed among these distances:
19 1 0.03
20 12 0.39
21 11 0.35
24 6 0.19
25 1 0.03
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (23 bp):
TTAATTAATCATTAATCATTTAA
Found at i:32144902 original size:4 final size:4
Alignment explanation
Indices: 32144893--32144940 Score: 62
Period size: 4 Copynumber: 12.2 Consensus size: 4
32144883 TGTTTAATAT
* * *
32144893 ATTA ATTA ATTA ATTA ATTA ATCA TTTA ATTA A-TC ATTA ATTA ATTA
1 ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA
32144940 A
1 A
32144941 CCTTAATCTC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
3 2 0.05
4 35 0.95
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (4 bp):
ATTA
Found at i:32144955 original size:31 final size:30
Alignment explanation
Indices: 32144897--32144956 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 30
32144887 TAATATATTA
*
32144897 ATTAATTAATTAATTAATCATTTAATTAATC
1 ATTAATTAATTAATTAATCA-TCAATTAATC
32144928 ATTAATTAATTAACCTTAATC-TCAATTAA
1 ATTAATTAATTAA--TTAATCATCAATTAA
32144957 CAAAATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
31 20 0.77
33 6 0.23
ACGTcount: A:0.45, C:0.10, G:0.00, T:0.45
Consensus pattern (30 bp):
ATTAATTAATTAATTAATCATCAATTAATC
Found at i:32145306 original size:15 final size:16
Alignment explanation
Indices: 32145273--32145317 Score: 67
Period size: 15 Copynumber: 2.9 Consensus size: 16
32145263 ATTAAATTTT
32145273 ATTAATTGAGATT-AAG
1 ATTAATT-AGATTAAAG
32145289 ATTAATTA-ATTAAAG
1 ATTAATTAGATTAAAG
32145304 ATTAATTAGATTAA
1 ATTAATTAGATTAA
32145318 TTAAATGATT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 3 0.11
15 12 0.44
16 12 0.44
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.40
Consensus pattern (16 bp):
ATTAATTAGATTAAAG
Found at i:32145316 original size:20 final size:19
Alignment explanation
Indices: 32145289--32145343 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 19
32145279 TGAGATTAAG
32145289 ATTAATTAATTAAAGATTA
1 ATTAATTAATTAAAGATTA
32145308 ATTAGATTAATTAAATGATTA
1 ATTA-ATTAATTAAA-GATTA
*
32145329 ATGAATTAATTAAAG
1 ATTAATTAATTAAAG
32145344 TATATATATT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
19 5 0.15
20 20 0.61
21 8 0.24
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (19 bp):
ATTAATTAATTAAAGATTA
Found at i:32148182 original size:71 final size:71
Alignment explanation
Indices: 32148083--32148227 Score: 218
Period size: 71 Copynumber: 2.0 Consensus size: 71
32148073 AGAGTACCAA
* * * * *
32148083 TAGAAGTGCAAGGGATGTTGAACTTTGGCTACTGATTTGACTTGTTTCGATAGAAGTCCTCAAGG
1 TAGAAGTGCAAGAGATGCTGAACCTTGGCTACTAACTTGACTTGTTTCGATAGAAGTCCTCAAGG
32148148 TATCGG
66 TATCGG
* * *
32148154 TAGAAGTGTAAGAGATGCTGAACCTTGGCTACTAACTTGACTTGTTTTGGTAGAAGTCCTCAAGG
1 TAGAAGTGCAAGAGATGCTGAACCTTGGCTACTAACTTGACTTGTTTCGATAGAAGTCCTCAAGG
32148219 TATCGG
66 TATCGG
32148225 TAG
1 TAG
32148228 CACTTTAGTT
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
71 66 1.00
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (71 bp):
TAGAAGTGCAAGAGATGCTGAACCTTGGCTACTAACTTGACTTGTTTCGATAGAAGTCCTCAAGG
TATCGG
Found at i:32158108 original size:129 final size:129
Alignment explanation
Indices: 32157874--32158117 Score: 452
Period size: 129 Copynumber: 1.9 Consensus size: 129
32157864 TACACCAATG
32157874 TATTATTTGAATTATTCGAGCCATTTAAATTGTAAAATTCAACTCGACTCGAACTCGAAACTCGA
1 TATTATTTGAATTATTCGAGCCATTTAAATTGTAAAATTCAACTCGACTCGAACTCGAAACTCGA
*
32157939 ATTACTTATTCGAGTTGGCTCAAATAACTCGATTCGATTAACTTAAAATTTGAATTTTTTAATA
66 ATTACTTATTCAAGTTGGCTCAAATAACTCGATTCGATTAACTTAAAATTTGAATTTTTTAATA
* *
32158003 TATTATTTGAATTATTCGAGTCATTTAAATTGTAAAATTCAACTCGACTCGAATTCGAAACTCGA
1 TATTATTTGAATTATTCGAGCCATTTAAATTGTAAAATTCAACTCGACTCGAACTCGAAACTCGA
*
32158068 ATTACTTATTCAAGTTGGCTCAAATAACTCGATTCTATTAACTTAAAATT
66 ATTACTTATTCAAGTTGGCTCAAATAACTCGATTCGATTAACTTAAAATT
32158118 CAAAATTTTT
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
129 111 1.00
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (129 bp):
TATTATTTGAATTATTCGAGCCATTTAAATTGTAAAATTCAACTCGACTCGAACTCGAAACTCGA
ATTACTTATTCAAGTTGGCTCAAATAACTCGATTCGATTAACTTAAAATTTGAATTTTTTAATA
Found at i:32161808 original size:4 final size:4
Alignment explanation
Indices: 32161801--32161849 Score: 50
Period size: 4 Copynumber: 12.5 Consensus size: 4
32161791 AAAAAGGAGT
*
32161801 AATA AATA AATG AATA AACTA AAT- AAT- AATA AAT- AATAA AATA AATA
1 AATA AATA AATA AATA AA-TA AATA AATA AATA AATA AAT-A AATA AATA
32161848 AA
1 AA
32161850 CCAAGGCTCT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
3 9 0.23
4 23 0.59
5 7 0.18
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:32161818 original size:12 final size:11
Alignment explanation
Indices: 32161800--32161848 Score: 64
Period size: 12 Copynumber: 4.3 Consensus size: 11
32161790 TAAAAAGGAG
32161800 TAATAAATAAA
1 TAATAAATAAA
32161811 TGAATAAACTAAA
1 T-AATAAA-TAAA
32161824 TAAT-AATAAA
1 TAATAAATAAA
32161834 TAATAAAATAAA
1 TAAT-AAATAAA
32161846 TAA
1 TAA
32161849 ACCAAGGCTC
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
10 8 0.24
11 3 0.09
12 18 0.53
13 5 0.15
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (11 bp):
TAATAAATAAA
Found at i:32164050 original size:22 final size:20
Alignment explanation
Indices: 32164025--32164067 Score: 50
Period size: 20 Copynumber: 2.0 Consensus size: 20
32164015 AAACACAATA
32164025 ACAAGTCAATATTCTAATATTC
1 ACAA-TCAA-ATTCTAATATTC
* *
32164047 ACAATCAAATTTTATTATTC
1 ACAATCAAATTCTAATATTC
32164067 A
1 A
32164068 TTCCTGATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 11 0.58
21 4 0.21
22 4 0.21
ACGTcount: A:0.42, C:0.16, G:0.02, T:0.40
Consensus pattern (20 bp):
ACAATCAAATTCTAATATTC
Found at i:32164732 original size:29 final size:29
Alignment explanation
Indices: 32164700--32164761 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
32164690 TCCCTGTACT
* *
32164700 CTTTATAATTTTAA-AATTTAGTCTCTATA
1 CTTT-TAATTTTAAGAACTTAGTCACTATA
* *
32164729 CTTTTATTTTTAAGAACTTAGTCACTCTA
1 CTTTTAATTTTAAGAACTTAGTCACTATA
32164758 CTTT
1 CTTT
32164762 CCAAATTTCA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 8 0.29
29 20 0.71
ACGTcount: A:0.29, C:0.15, G:0.05, T:0.52
Consensus pattern (29 bp):
CTTTTAATTTTAAGAACTTAGTCACTATA
Found at i:32165187 original size:18 final size:18
Alignment explanation
Indices: 32165161--32165198 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
32165151 TTTTACACCC
*
32165161 ATATTTTTTAA-TCTTATT
1 ATATATTTTAAGT-TTATT
32165179 ATATATTTTAAGTTTATT
1 ATATATTTTAAGTTTATT
32165197 AT
1 AT
32165199 GCTCCATCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 17 0.94
19 1 0.06
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.63
Consensus pattern (18 bp):
ATATATTTTAAGTTTATT
Found at i:32170164 original size:11 final size:11
Alignment explanation
Indices: 32170140--32170233 Score: 69
Period size: 11 Copynumber: 9.1 Consensus size: 11
32170130 CAAATAAATC
32170140 ATTT-CTCT-A
1 ATTTCCTCTCA
32170149 ATTTCCTCTCA
1 ATTTCCTCTCA
32170160 ATTTCCTCTCAA
1 ATTTCCTCTC-A
*
32170172 ATTT-CTCCCA
1 ATTTCCTCTCA
*
32170182 A-ATCC-CT--
1 ATTTCCTCTCA
**
32170189 ATTTAATCTCA
1 ATTTCCTCTCA
*
32170200 ATTTTCTCTCA
1 ATTTCCTCTCA
32170211 ATTTCCTCTCAA
1 ATTTCCTCTC-A
32170223 ATTT-CTCTCA
1 ATTTCCTCTCA
32170233 A
1 A
32170234 ATCCCTATTT
Statistics
Matches: 67, Mismatches: 9, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
7 1 0.01
8 1 0.01
9 8 0.12
10 9 0.13
11 38 0.57
12 10 0.15
ACGTcount: A:0.24, C:0.31, G:0.00, T:0.45
Consensus pattern (11 bp):
ATTTCCTCTCA
Found at i:32170209 original size:51 final size:52
Alignment explanation
Indices: 32170143--32170245 Score: 181
Period size: 51 Copynumber: 2.0 Consensus size: 52
32170133 ATAAATCATT
32170143 TCTCTAATTTCCTCTCAATTTCCTCTCAAATTTCTCCCAAATCCCTATTTAA
1 TCTCTAATTTCCTCTCAATTTCCTCTCAAATTTCTCCCAAATCCCTATTTAA
* *
32170195 TCTC-AATTTTCTCTCAATTTCCTCTCAAATTTCTCTCAAATCCCTATTTAA
1 TCTCTAATTTCCTCTCAATTTCCTCTCAAATTTCTCCCAAATCCCTATTTAA
32170246 AAGAGCTTTA
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
51 45 0.92
52 4 0.08
ACGTcount: A:0.25, C:0.31, G:0.00, T:0.44
Consensus pattern (52 bp):
TCTCTAATTTCCTCTCAATTTCCTCTCAAATTTCTCCCAAATCCCTATTTAA
Found at i:32172086 original size:18 final size:18
Alignment explanation
Indices: 32172063--32172106 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
32172053 ATGCCAGGTG
* * *
32172063 TGTATCTTAGCCCTTTTA
1 TGTATCCTAACCCTTATA
32172081 TGTATCCTAACCCTTATA
1 TGTATCCTAACCCTTATA
*
32172099 TGTTTCCT
1 TGTATCCT
32172107 TTTTCGAGTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.18, C:0.25, G:0.09, T:0.48
Consensus pattern (18 bp):
TGTATCCTAACCCTTATA
Found at i:32172677 original size:119 final size:115
Alignment explanation
Indices: 32172398--32172806 Score: 562
Period size: 114 Copynumber: 3.6 Consensus size: 115
32172388 ATATACGAAA
* * **
32172398 GAAAAAAAA-ACAAAAAAAAAATTTTTTGGTGCTGGCCTGTCAATGGCCGGCACCCAGTGTACAG
1 GAAAAAAAATA-AAAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAG
* * * * *
32172462 TAC-CAAAAAAAAATTTGTTTTTTTT-ATGTCAGAGTCAGATTTAAAAATAC
65 TACGAAAAAAAAAATTTATTTTTTTTCGTGTCAGAATCAGA-TAAAAAATAC
* *
32172512 GAAAAAAAATAAAAATAAAAAATTTTGGGTGCTGGCCTTTCAATGGCCGGCACCCAGTACACAGT
1 GAAAAAAAATAAAAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGT
32172577 ACGAAGAAAAAAAAATTTATTTTTTTTCGTGTCAGAATCAGATAAAAAAATAC
66 ACG-A-AAAAAAAAATTTATTTTTTTTCGTGTCAGAATCAGAT-AAAAAATAC
32172630 GAAAAAAAATAAAAAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAG
1 GAAAAAAAAT-AAAAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAG
*
32172695 TACGAAAAAAAAAA-TTATTTTTTTTCGTGTAAGAATCAGATAAAAAATAC
65 TACGAAAAAAAAAATTTATTTTTTTTCGTGTCAGAATCAGATAAAAAATAC
* * * * *
32172745 G-AAAAAAAT--TAAAAAAAAATTTTGGGTGTTGACCTATCAATGGCCGGCACCCAGAACACAGT
1 GAAAAAAAATAAAAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGT
32172807 GGGTCTGTTT
Statistics
Matches: 269, Mismatches: 19, Indels: 17
0.88 0.06 0.06
Matches are distributed among these distances:
111 48 0.18
114 67 0.25
115 11 0.04
116 26 0.10
117 30 0.11
118 31 0.12
119 56 0.21
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.25
Consensus pattern (115 bp):
GAAAAAAAATAAAAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGT
ACGAAAAAAAAAATTTATTTTTTTTCGTGTCAGAATCAGATAAAAAATAC
Done.