Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63323194
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1953226 characters in sequence are not A, C, G, or T
File 94 of 199
Found at i:32173238 original size:111 final size:111
Alignment explanation
Indices: 32173099--32173610 Score: 683
Period size: 111 Copynumber: 4.5 Consensus size: 111
32173089 TTCTGACACG
* *
32173099 AAAAAAAAATTTGGTACTATGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAATTTTTT
1 AAAAAAAAATTTCGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAATTTTTT
32173164 TTTATTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAAT
66 TTTATTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAAT
*
32173210 AAAAAAAAATTTCGTACTGTGTACTGGGTGCCGGCCATTGACAGGGCAGCACCCAAAAAATTTTT
1 AAAAAAAAATTTCGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCC-AAAAATTTTT
* * *
32173275 TTTAAAATTTTTTTCGTATTTTTTATCTAATTCTTACACGAAAAAAAAT
65 TTT--TATTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAAT
***** *
32173324 -AAATTTTTTTTCGTACTGTGTACTGGGTGCCGACCATTGACAGGCCAGCACCCAAAAATATTTT
1 AAAAAAAAATTTCGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAAT-TTTT
*
32173388 TTTTATTTTTTTCGTATTTTTTTATCTGATTCTGATACGAAAAAAAAT
65 TTTTATTTTTTTCGTA-TTTTTTATCTGATTCTGACACGAAAAAAAAT
32173436 AAAATAAAAAATTTTCTTCGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCC--AAA
1 -AAA-AAAAAA---T-TTCGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAA
* * * *
32173499 TTTTTTTTTA-TTTTTTCATATTTTTTAATCTGACTCTGACA-TAAAAAAAACA
60 TTTTTTTTTATTTTTTTCGTATTTTTT-ATCTGATTCTGACACGAAAAAAAA-T
* **
32173551 AAAAAAAAATTTTGGTACTGTACACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAA
1 AAAAAAAAA-TTTCGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAA
32173611 AAAAAATTTT
Statistics
Matches: 354, Mismatches: 31, Indels: 31
0.85 0.07 0.07
Matches are distributed among these distances:
110 41 0.12
111 65 0.18
112 50 0.14
113 59 0.17
114 60 0.17
115 22 0.06
116 9 0.03
117 4 0.01
118 1 0.00
119 43 0.12
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.35
Consensus pattern (111 bp):
AAAAAAAAATTTCGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAATTTTTT
TTTATTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAAT
Found at i:32176898 original size:31 final size:31
Alignment explanation
Indices: 32176805--32176900 Score: 165
Period size: 31 Copynumber: 3.1 Consensus size: 31
32176795 GGCAAATTAC
* *
32176805 AAGAGTAATTGAATACTAATAAAACTCTTTC
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
32176836 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
32176868 AAGAGTAATTGAATCCTAATAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
32176899 AA
1 AA
32176901 ATTATCTAAG
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
31 32 0.52
32 30 0.48
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.31
Consensus pattern (31 bp):
AAGAGTAATTGAATCCTAATAAAACTCTTTA
Found at i:32182440 original size:13 final size:13
Alignment explanation
Indices: 32182422--32182451 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
32182412 GGTAGGTAAC
32182422 TTTTTTTTGCGCT
1 TTTTTTTTGCGCT
32182435 TTTTTTTTGCGCT
1 TTTTTTTTGCGCT
32182448 TTTT
1 TTTT
32182452 GCTTTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.00, C:0.13, G:0.13, T:0.73
Consensus pattern (13 bp):
TTTTTTTTGCGCT
Found at i:32182462 original size:32 final size:30
Alignment explanation
Indices: 32182421--32182501 Score: 119
Period size: 30 Copynumber: 2.7 Consensus size: 30
32182411 AGGTAGGTAA
*
32182421 CTTTTTTTTGCGCTTTTTTTTTGCGCTTTTTG
1 CTTTTTTTT--GCTGTTTTTTTGCGCTTTTTG
32182453 CTTTTTTTTGCTGTTTTTTTGCGCTTTTTG
1 CTTTTTTTTGCTGTTTTTTTGCGCTTTTTG
*
32182483 C-TTTTTTTGCTATTTTTTT
1 CTTTTTTTTGCTGTTTTTTT
32182502 TAAAGAATAA
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
29 17 0.36
30 21 0.45
32 9 0.19
ACGTcount: A:0.01, C:0.14, G:0.14, T:0.72
Consensus pattern (30 bp):
CTTTTTTTTGCTGTTTTTTTGCGCTTTTTG
Found at i:32183129 original size:31 final size:31
Alignment explanation
Indices: 32183036--32183131 Score: 165
Period size: 31 Copynumber: 3.1 Consensus size: 31
32183026 GGCAAATTAC
* *
32183036 AAGAGTAATTGAATACTAATAAAACTCTTTC
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
32183067 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
32183099 AAGAGTAATTGAATCCTAATAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
32183130 AA
1 AA
32183132 ATTATCTAAG
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
31 32 0.52
32 30 0.48
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.31
Consensus pattern (31 bp):
AAGAGTAATTGAATCCTAATAAAACTCTTTA
Found at i:32184833 original size:95 final size:94
Alignment explanation
Indices: 32184680--32184955 Score: 261
Period size: 95 Copynumber: 2.9 Consensus size: 94
32184670 AGTAACCGTA
* *
32184680 AACCCCAAACCCTAATTTATTTGAGTTTTTACTTAAAAACCCTAAACACAAAACCCTAAACTAAT
1 AACCCTAAACCCTAATTTATTT-AATTTTT-CTTAAAAACCCTAAACACAAAACCCTAAACTAAT
*
32184745 TTATTATAAA-TTTATAATTAATTTACTCAAGT
64 TT-TTA-AAATTTTATAATTAAATTACTCAAGT
* * * * * * * * *
32184777 AACCCTGAACCTTAATTTATTTAATTTTTCTTTAAAACCCTTAACTCTAAATCCTAATCTGATTT
1 AACCCTAAACCCTAATTTATTTAATTTTTCTTAAAAACCCTAAACACAAAACCCTAAACTAATTT
*
32184842 TTAAAATTTTTTTAATTAAATTACTCAAGT
66 TTAAAA-TTTTATAATTAAATTACTCAAGT
** * * *** *
32184872 AATTCTAAACCCTAATTTAATTGATTTTTTCTTAAAAAATAATAAACACGAAAA--CTAATCTAA
1 AACCCTAAACCCTAATTT-ATTTAATTTTTCTT-AAAAACCCTAAACAC-AAAACCCTAAACTAA
*
32184935 TTTTAAAAATTTTATAATTAA
63 TTTTTAAAATTTTATAATTAA
32184956 TTTAATTGAC
Statistics
Matches: 145, Mismatches: 29, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
93 3 0.02
94 3 0.02
95 74 0.51
96 34 0.23
97 28 0.19
98 3 0.02
ACGTcount: A:0.41, C:0.16, G:0.03, T:0.40
Consensus pattern (94 bp):
AACCCTAAACCCTAATTTATTTAATTTTTCTTAAAAACCCTAAACACAAAACCCTAAACTAATTT
TTAAAATTTTATAATTAAATTACTCAAGT
Found at i:32192535 original size:23 final size:23
Alignment explanation
Indices: 32192507--32192600 Score: 134
Period size: 23 Copynumber: 4.1 Consensus size: 23
32192497 ATGTGTGTAT
* *
32192507 CTTTTCATATTCAAGCCTCTTAA
1 CTTTTCATATTCAAGTCTCTTCA
*
32192530 CTTTTCATCTTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
* * *
32192553 CTATTCATATTCAAGTTTTTTCA
1 CTTTTCATATTCAAGTCTCTTCA
32192576 CTTTTCATATTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
32192599 CT
1 CT
32192601 CTTCTAACTT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.22, C:0.26, G:0.04, T:0.48
Consensus pattern (23 bp):
CTTTTCATATTCAAGTCTCTTCA
Found at i:32197029 original size:23 final size:23
Alignment explanation
Indices: 32197001--32197094 Score: 134
Period size: 23 Copynumber: 4.1 Consensus size: 23
32196991 ATGTGTGTAT
* *
32197001 CTTTTCATATTCAAGCCTCTTAA
1 CTTTTCATATTCAAGTCTCTTCA
*
32197024 CTTTTCATCTTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
* * *
32197047 CTATTCATATTCAAGTTTTTTCA
1 CTTTTCATATTCAAGTCTCTTCA
32197070 CTTTTCATATTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
32197093 CT
1 CT
32197095 CTTCTAACTT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.22, C:0.26, G:0.04, T:0.48
Consensus pattern (23 bp):
CTTTTCATATTCAAGTCTCTTCA
Found at i:32198001 original size:8 final size:8
Alignment explanation
Indices: 32197990--32198020 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
32197980 ATATCTATAT
32197990 ATGTGTAA
1 ATGTGTAA
32197998 ATGTGTAA
1 ATGTGTAA
32198006 ATGTGTAA
1 ATGTGTAA
32198014 ATGTGTA
1 ATGTGTA
32198021 TGTGTATGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.26, T:0.39
Consensus pattern (8 bp):
ATGTGTAA
Found at i:32206267 original size:16 final size:16
Alignment explanation
Indices: 32206248--32206292 Score: 72
Period size: 16 Copynumber: 2.8 Consensus size: 16
32206238 AAGGAAAATA
32206248 TTTTATGACAATAAAC
1 TTTTATGACAATAAAC
32206264 TTTTATGACAATAAAC
1 TTTTATGACAATAAAC
* *
32206280 TTGTATGTCAATA
1 TTTTATGACAATA
32206293 CTATTTTACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.40, C:0.11, G:0.09, T:0.40
Consensus pattern (16 bp):
TTTTATGACAATAAAC
Found at i:32216974 original size:43 final size:43
Alignment explanation
Indices: 32216926--32217023 Score: 144
Period size: 43 Copynumber: 2.3 Consensus size: 43
32216916 TTATGTGGAA
**
32216926 AAACGCCGCTATAA-AACATGACCTTTAGCGGTGCTTTCCCCAC
1 AAACGCCGCTA-AAGAACATGACCTTTAGCGGCACTTTCCCCAC
*
32216969 AAACGCCGCTAAAGAACATGACCTTTAGTGGCACTTTCCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCACTTTCCCCAC
*
32217012 AAACGCCACTAA
1 AAACGCCGCTAA
32217024 CTTTAACAGA
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
42 2 0.04
43 48 0.96
ACGTcount: A:0.32, C:0.33, G:0.15, T:0.20
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCACTTTCCCCAC
Found at i:32217822 original size:13 final size:14
Alignment explanation
Indices: 32217796--32217824 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
32217786 ACAAATGACG
32217796 AATTAAACCATTAT
1 AATTAAACCATTAT
32217810 AATTAAA-CATTAT
1 AATTAAACCATTAT
32217823 AA
1 AA
32217825 ATATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:32219825 original size:23 final size:24
Alignment explanation
Indices: 32219797--32219842 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
32219787 ATAATAATGA
* *
32219797 AAACGTGAATAAA-TAATCAAAAT
1 AAACGTGAACAAAGTAATAAAAAT
32219820 AAACGTGAACAAAGTAATAAAAA
1 AAACGTGAACAAAGTAATAAAAA
32219843 ATATAAAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.63, C:0.09, G:0.11, T:0.17
Consensus pattern (24 bp):
AAACGTGAACAAAGTAATAAAAAT
Found at i:32219842 original size:24 final size:23
Alignment explanation
Indices: 32219783--32219842 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 23
32219773 TAAAAATAAT
* *
32219783 AATAATAATAATGAAAACGTGAATA
1 AATAATAAAAAT--AAACGTGAACA
*
32219808 AATAATCAAAATAAACGTGAACA
1 AATAATAAAAATAAACGTGAACA
32219831 AAGTAATAAAAA
1 AA-TAATAAAAA
32219843 ATATAAAAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
23 12 0.40
24 8 0.27
25 10 0.33
ACGTcount: A:0.63, C:0.07, G:0.10, T:0.20
Consensus pattern (23 bp):
AATAATAAAAATAAACGTGAACA
Found at i:32219977 original size:6 final size:6
Alignment explanation
Indices: 32219966--32219994 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
32219956 ATAAAAACAT
32219966 ATATAG ATATAG ATATAG ATATAG ATATA
1 ATATAG ATATAG ATATAG ATATAG ATATA
32219995 TATGCGCGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34
Consensus pattern (6 bp):
ATATAG
Found at i:32223485 original size:27 final size:27
Alignment explanation
Indices: 32223455--32223523 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
32223445 TCAGAACCAC
32223455 TAGCCCAATAACCCAATAGCCTACCCT
1 TAGCCCAATAACCCAATAGCCTACCCT
32223482 TAGCCCAATAACCCAATAGCCTACCCT
1 TAGCCCAATAACCCAATAGCCTACCCT
*
32223509 CAGCCCAA-AACCCAA
1 TAGCCCAATAACCCAA
32223524 AACAAAAAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
26 7 0.17
27 34 0.83
ACGTcount: A:0.36, C:0.42, G:0.07, T:0.14
Consensus pattern (27 bp):
TAGCCCAATAACCCAATAGCCTACCCT
Found at i:32224986 original size:23 final size:23
Alignment explanation
Indices: 32224941--32225013 Score: 60
Period size: 23 Copynumber: 3.1 Consensus size: 23
32224931 TTGTTAATAA
**
32224941 TTTATATAGATACATATCCTTTTAT
1 TTTATA-AG-TACATATATTTTTAT
32224966 TTTATAAGTACATATATTTTTA-
1 TTTATAAGTACATATATTTTTAT
* * *
32224988 TATGTACGTACATATATATTTT-T
1 TTTATAAGTACATATAT-TTTTAT
32225011 TTT
1 TTT
32225014 GTATATCTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
22 14 0.35
23 18 0.45
24 2 0.05
25 6 0.15
ACGTcount: A:0.32, C:0.08, G:0.05, T:0.55
Consensus pattern (23 bp):
TTTATAAGTACATATATTTTTAT
Found at i:32225250 original size:18 final size:18
Alignment explanation
Indices: 32225227--32225261 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
32225217 TATACACCCA
*
32225227 TATATATGTACATATTTT
1 TATATATATACATATTTT
32225245 TATATATATACATATTT
1 TATATATATACATATTT
32225262 ATCGTTTCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.54
Consensus pattern (18 bp):
TATATATATACATATTTT
Found at i:32232706 original size:46 final size:44
Alignment explanation
Indices: 32232624--32232920 Score: 215
Period size: 44 Copynumber: 6.9 Consensus size: 44
32232614 ATAATACAGG
* *
32232624 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAA--TCAGA
* *
32232670 TCTCATCTCCCTGAGATTACAGCGGAGCAGATCAAAG-A-CAGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATCAG--A
* * * * *
32232714 TCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAG-----GA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATCAGA
* * * * *
32232753 TC-TATCTCTCTGA-AGTTACAGTAGAGAAGATC--A-CATCAGG
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGAATCAGA
* *
32232793 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAA--TCAGA
* * ** * *
32232839 TCTTATTTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA-GAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-AATCAGA
* *
32232883 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGA
32232921 CACTATCCTA
Statistics
Matches: 196, Mismatches: 39, Indels: 35
0.73 0.14 0.13
Matches are distributed among these distances:
36 1 0.01
37 1 0.01
38 21 0.11
39 3 0.02
40 3 0.02
41 24 0.12
42 4 0.02
43 1 0.01
44 68 0.35
45 1 0.01
46 68 0.35
47 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (44 bp):
TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATCAGA
Found at i:32232903 original size:44 final size:43
Alignment explanation
Indices: 32232624--32232915 Score: 206
Period size: 46 Copynumber: 6.8 Consensus size: 43
32232614 ATAATACAGG
* * * *
32232624 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGCA---GAGA
* *
32232670 TCTCATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACAGTA-A
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-CAG-AGA
* * * * *
32232714 TCCTATCTCCTTGAGATTACAATGGAGCGGAT-TAA--AG-GA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGCAGAGA
* * * * *
32232753 TC-TATCTCTCTGA-AGTTACAGTAGAGAAGATCACATCAG-G-
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGCAGAGA
* * * *
32232793 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGCA---GAGA
* * **
32232839 TCTTATTTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-CAGAGA
*
32232883 TCTTATCTCCCTGAGATTACAGCGGAGCAGATC
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATC
32232916 GAAGACACTA
Statistics
Matches: 189, Mismatches: 42, Indels: 32
0.72 0.16 0.12
Matches are distributed among these distances:
37 1 0.01
38 21 0.11
39 4 0.02
40 4 0.02
41 29 0.15
42 1 0.01
43 2 0.01
44 59 0.31
45 2 0.01
46 64 0.34
47 2 0.01
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.26
Consensus pattern (43 bp):
TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGCAGAGA
Found at i:32232947 original size:43 final size:43
Alignment explanation
Indices: 32232836--32232952 Score: 110
Period size: 44 Copynumber: 2.7 Consensus size: 43
32232826 AAAGAATTTC
* * * * *
32232836 AGATCTTATTTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG
1 AGATCCTATCTCCCCGA-GTTACAGTGGAGCAGATCGAAGACAG
* * *
32232880 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACA-
1 AGATCCTATCTCCCCGAG-TTACAGTGGAGCAGATCGAAGACAG
**
32232923 CTATCCTATCTCCCCGAAGTTACAGTGGAG
1 AGATCCTATCTCCCCG-AGTTACAGTGGAG
32232953 TGGATTAAAA
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
43 23 0.37
44 39 0.63
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (43 bp):
AGATCCTATCTCCCCGAGTTACAGTGGAGCAGATCGAAGACAG
Found at i:32232977 original size:87 final size:86
Alignment explanation
Indices: 32232881--32233335 Score: 269
Period size: 87 Copynumber: 5.2 Consensus size: 86
32232871 TGAAGCCAGA
* * * *
32232881 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCCGAAGTTAC
1 GATCTTATCTCTCTGAGATTACAGCGGAGTAGATCGAAGTCA-TATCCTATCTCCCTGAAGTTAC
32232946 AGTGGAGTGGATTAAAATAAAG
65 AGTGGAGTGGATTAAAATAAAG
* * * * * * * *
32232968 GATCTTATCTCTCTGAGGTTACAGCAGAGTAGGTCGCA-TCA-AGTCTTATTTCCCTGAAGATGC
1 GATCTTATCTCTCTGAGATTACAGCGGAGTAGATCGAAGTCATA-TCCTATCTCCCTGAAGTTAC
* * * *
32233031 AGTGGAATAGATTGAAAACAACG
65 AGTGGAGTGGATT-AAAATAAAG
* * * ** * *
32233054 AATCTTAT-TCCCCT-AAAGTTGTAGTGGAATAGATGGAAGCGAAGTCACTATCCTATCTCCCTG
1 GATCTTATCT-CTCTGAGA-TTACAGCGGAGTAGAT-----CGAAGTCA-TATCCTATCTCCCTG
**
32233117 AAGTTACAGTGGAACGGATTAAAATAAAG
58 AAGTTACAGTGGAGTGGATTAAAATAAAG
*** * ** * * *
32233146 GATCTTATCTCTCTGA-AGTTACAATAGAGTAGATCGCA-TCAGGTCTTATTTCCC-AAAGGTTA
1 GATCTTATCTCTCTGAGA-TTACAGCGGAGTAGATCGAAGTCATATCCTATCTCCCTGAA-GTTA
* * ** **
32233208 CAGCGGAGTAGACCGAAGAATTGCA-
64 CAGTGGAGTGGA-TTAA-AA-TAAAG
* * ** *
32233233 GATCTTATCTCTCTGAGGTTACAGCGGAGCAGATTAAAGACATAATCCTATCTCCCTGAAGTTAC
1 GATCTTATCTCTCTGAGATTACAGCGGAGTAGATCGAAGTCAT-ATCCTATCTCCCTGAAGTTAC
* *
32233298 AGTGGAGCGAATTAAAATAAAG
65 AGTGGAGTGGATTAAAATAAAG
*
32233320 AATCTTATCTCTCTGA
1 GATCTTATCTCTCTGA
32233336 AGTAGCAGTA
Statistics
Matches: 266, Mismatches: 79, Indels: 46
0.68 0.20 0.12
Matches are distributed among these distances:
84 3 0.01
85 49 0.18
86 36 0.14
87 83 0.31
88 6 0.02
89 21 0.08
90 2 0.01
91 3 0.01
92 33 0.12
93 29 0.11
94 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.27
Consensus pattern (86 bp):
GATCTTATCTCTCTGAGATTACAGCGGAGTAGATCGAAGTCATATCCTATCTCCCTGAAGTTACA
GTGGAGTGGATTAAAATAAAG
Found at i:32233667 original size:27 final size:27
Alignment explanation
Indices: 32233637--32233705 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
32233627 TCAGAACCAC
32233637 TAGCCCAATAACCCAATAGCCTACCCT
1 TAGCCCAATAACCCAATAGCCTACCCT
32233664 TAGCCCAATAACCCAATAGCCTACCCT
1 TAGCCCAATAACCCAATAGCCTACCCT
*
32233691 CAGCCCAA-AACCCAA
1 TAGCCCAATAACCCAA
32233706 AACAAAAAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
26 7 0.17
27 34 0.83
ACGTcount: A:0.36, C:0.42, G:0.07, T:0.14
Consensus pattern (27 bp):
TAGCCCAATAACCCAATAGCCTACCCT
Found at i:32235156 original size:23 final size:23
Alignment explanation
Indices: 32235111--32235183 Score: 67
Period size: 22 Copynumber: 3.1 Consensus size: 23
32235101 TTGTTAATAA
**
32235111 TTTATATAGATACATATCCTTTTAT
1 TTTATA-AG-TACATATATTTTTAT
32235136 TTTATAAGTACATATATTTTTA-
1 TTTATAAGTACATATATTTTTAT
* * * *
32235158 TATGTACGTACATATATTTTTTT
1 TTTATAAGTACATATATTTTTAT
32235181 TTT
1 TTT
32235184 GTATATCTTA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
22 18 0.45
23 14 0.35
24 2 0.05
25 6 0.15
ACGTcount: A:0.30, C:0.08, G:0.05, T:0.56
Consensus pattern (23 bp):
TTTATAAGTACATATATTTTTAT
Found at i:32235420 original size:18 final size:18
Alignment explanation
Indices: 32235397--32235431 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
32235387 TATACACCCA
*
32235397 TATATATGTACATATTTT
1 TATATATATACATATTTT
32235415 TATATATATACATATTT
1 TATATATATACATATTT
32235432 ATCGTTTCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.54
Consensus pattern (18 bp):
TATATATATACATATTTT
Found at i:32237782 original size:43 final size:42
Alignment explanation
Indices: 32237735--32237861 Score: 194
Period size: 43 Copynumber: 3.1 Consensus size: 42
32237725 ATCTAAAGTT
32237735 TTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAG
1 TTATGTAAGTTATGATATG-TATATATTTATGTATTATGTAAG
32237778 TTATGTAAGTTATGATATG-ATATA--TA--T-TTATGTAAG
1 TTATGTAAGTTATGATATGTATATATTTATGTATTATGTAAG
32237814 TTATGTAAGTTATGATATGGTATATATTTATGTATTATGTAAG
1 TTATGTAAGTTATGATAT-GTATATATTTATGTATTATGTAAG
32237857 TTATG
1 TTATG
32237862 ATCCAAAGTT
Statistics
Matches: 77, Mismatches: 0, Indels: 14
0.85 0.00 0.15
Matches are distributed among these distances:
36 27 0.35
37 2 0.03
38 5 0.06
39 2 0.03
40 2 0.03
41 5 0.06
42 1 0.01
43 33 0.43
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (42 bp):
TTATGTAAGTTATGATATGTATATATTTATGTATTATGTAAG
Found at i:32237816 original size:36 final size:36
Alignment explanation
Indices: 32237735--32237863 Score: 172
Period size: 36 Copynumber: 3.4 Consensus size: 36
32237725 ATCTAAAGTT
32237735 TTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAG
1 TTATGTAAGTTATGATATG--ATATA--TA--T-TTATGTAAG
32237778 TTATGTAAGTTATGATATGATATATATTTATGTAAG
1 TTATGTAAGTTATGATATGATATATATTTATGTAAG
*
32237814 TTATGTAAGTTATGATATGGTATATATTTATGT-A-
1 TTATGTAAGTTATGATATGATATATATTTATGTAAG
32237848 TTATGTAAGTTATGAT
1 TTATGTAAGTTATGAT
32237864 CCAAAGTTTT
Statistics
Matches: 85, Mismatches: 1, Indels: 9
0.89 0.01 0.09
Matches are distributed among these distances:
34 16 0.19
35 1 0.01
36 41 0.48
37 1 0.01
39 2 0.02
41 5 0.06
43 19 0.22
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (36 bp):
TTATGTAAGTTATGATATGATATATATTTATGTAAG
Found at i:32237933 original size:13 final size:13
Alignment explanation
Indices: 32237915--32237941 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
32237905 TGATTATCAT
32237915 CTTTAAATTTTAA
1 CTTTAAATTTTAA
32237928 CTTTAAATTTTAA
1 CTTTAAATTTTAA
32237941 C
1 C
32237942 CCTTTAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.52
Consensus pattern (13 bp):
CTTTAAATTTTAA
Found at i:32240560 original size:41 final size:40
Alignment explanation
Indices: 32240475--32240578 Score: 127
Period size: 41 Copynumber: 2.6 Consensus size: 40
32240465 CTTGTAGTGC
* * *
32240475 CGCTAATGCTTGACCTTTTGTGGTGTTTTCTCATAAAAGA
1 CGCTAATGCTTGACTTTTTGCGGAGTTTTCTCATAAAAGA
* *
32240515 CGCTAATGCTTGACTTTTTGCGGAGTTTTTCTCATAAACGT
1 CGCTAATGCTTGACTTTTTGCGGAG-TTTTCTCATAAAAGA
* * *
32240556 CGCTATTGCTTTACTTATTGCGG
1 CGCTAATGCTTGACTTTTTGCGG
32240579 TATAATATTT
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
40 22 0.40
41 33 0.60
ACGTcount: A:0.19, C:0.19, G:0.20, T:0.41
Consensus pattern (40 bp):
CGCTAATGCTTGACTTTTTGCGGAGTTTTCTCATAAAAGA
Found at i:32242284 original size:17 final size:16
Alignment explanation
Indices: 32242261--32242294 Score: 50
Period size: 18 Copynumber: 2.0 Consensus size: 16
32242251 CCGACAATAC
32242261 AAAAAAAATTAGTTTTTT
1 AAAAAAAA-TA-TTTTTT
32242279 AAAAAAAATATTTTTT
1 AAAAAAAATATTTTTT
32242295 TCTTTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 2 0.12
18 8 0.50
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (16 bp):
AAAAAAAATATTTTTT
Found at i:32243459 original size:21 final size:24
Alignment explanation
Indices: 32243411--32243461 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 24
32243401 ATTGAATTGT
* *
32243411 AGGATCGATAGTTAAGTCATTGAT
1 AGGATCGATAATTAAGTCATTGAA
32243435 AGGATCGA-AATT-AGT-ATTGAA
1 AGGATCGATAATTAAGTCATTGAA
32243456 AGGATC
1 AGGATC
32243462 ACTTGTATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 11 0.44
22 3 0.12
23 3 0.12
24 8 0.32
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.29
Consensus pattern (24 bp):
AGGATCGATAATTAAGTCATTGAA
Found at i:32245960 original size:14 final size:14
Alignment explanation
Indices: 32245938--32245981 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
32245928 GAAATAATAA
*
32245938 TTTAATTAATATAT
1 TTTAATTAATAAAT
*
32245952 TTTATTTAATAAAT
1 TTTAATTAATAAAT
*
32245966 TATAATTAATAGAAT
1 TTTAATTAATA-AAT
32245981 T
1 T
32245982 ACTTATATGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
14 21 0.84
15 4 0.16
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (14 bp):
TTTAATTAATAAAT
Found at i:32246408 original size:52 final size:52
Alignment explanation
Indices: 32246346--32246452 Score: 196
Period size: 52 Copynumber: 2.1 Consensus size: 52
32246336 AAATTTTCAT
*
32246346 CCATTACTAATGTTAAAAATTATGATGCGTAATTATCTGATTATTCTGTTAG
1 CCATTACTAATGTTAAAAATTATGATGCGTAATTATCCGATTATTCTGTTAG
*
32246398 CCATTACTAATGTTAAGAATTATGATGCGTAATTATCCGATTATTCTGTTAG
1 CCATTACTAATGTTAAAAATTATGATGCGTAATTATCCGATTATTCTGTTAG
32246450 CCA
1 CCA
32246453 CGCTAATTTT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (52 bp):
CCATTACTAATGTTAAAAATTATGATGCGTAATTATCCGATTATTCTGTTAG
Found at i:32254859 original size:15 final size:16
Alignment explanation
Indices: 32254839--32254868 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
32254829 TATTTTCAAA
32254839 AAATATA-ATAAATTT
1 AAATATATATAAATTT
32254854 AAATATATATAAATT
1 AAATATATATAAATT
32254869 ACATTGTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
AAATATATATAAATTT
Found at i:32258972 original size:3 final size:3
Alignment explanation
Indices: 32258964--32258993 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
32258954 AATTATTCCC
*
32258964 ACT ACT ACT ACT TCT ACT ACT ACT ACT ACT
1 ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT
32258994 TCTTCTTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.30, C:0.33, G:0.00, T:0.37
Consensus pattern (3 bp):
ACT
Found at i:32262829 original size:14 final size:14
Alignment explanation
Indices: 32262802--32262835 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
32262792 TTTAATCTAG
*
32262802 TTTATATTAGTTTT
1 TTTATGTTAGTTTT
*
32262816 TTTATGTTATTTTT
1 TTTATGTTAGTTTT
32262830 TTTATG
1 TTTATG
32262836 GGCTTATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.00, G:0.09, T:0.74
Consensus pattern (14 bp):
TTTATGTTAGTTTT
Found at i:32272708 original size:24 final size:24
Alignment explanation
Indices: 32272681--32272732 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
32272671 TTAGTAAGTC
*
32272681 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
32272705 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
32272729 AAAT
1 AAAT
32272733 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:32275200 original size:19 final size:19
Alignment explanation
Indices: 32275176--32275215 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
32275166 ACAAATACAT
*
32275176 TACCAACTTAATTCAGATG
1 TACCAACTTAATTCAAATG
*
32275195 TACCAACTTAGTTCAAATG
1 TACCAACTTAATTCAAATG
32275214 TA
1 TA
32275216 ACTAAGTAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.33
Consensus pattern (19 bp):
TACCAACTTAATTCAAATG
Found at i:32275625 original size:13 final size:13
Alignment explanation
Indices: 32275607--32275631 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32275597 TGCCATGATC
32275607 TTTCTTAATTAAA
1 TTTCTTAATTAAA
32275620 TTTCTTAATTAA
1 TTTCTTAATTAA
32275632 CTGTTGCAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (13 bp):
TTTCTTAATTAAA
Found at i:32276182 original size:101 final size:98
Alignment explanation
Indices: 32275991--32276189 Score: 317
Period size: 101 Copynumber: 2.0 Consensus size: 98
32275981 ACTAGGCTCC
*
32275991 TATAGGTTGATTCATTAACCTTCTCAAAAACACATTGGCTATGCTTTTCTCCAAAACCAACTGGA
1 TATAGGTTGATTCATTAACCTTCTCAAAAACACATTGGCTATGCGTTTCTCCAAAACCAACTGGA
*
32276056 GTACCAGTTGCTTTGCAATTTTGCATGGGGAAT
66 GTACCAGTTACTTTGCAATTTTGCATGGGGAAT
*
32276089 TATAGGTTGATTCATTAACCTTCTCAAAAACACTTTGGCTTGATAGCGTTTCTCCAAAACCAACT
1 TATAGGTTGATTCATTAACCTTCTCAAAAACACATTGGC-T-AT-GCGTTTCTCCAAAACCAACT
* * *
32276154 GGAGTACTAGTTACTTTGTAATTTTGCATTGGGAAT
63 GGAGTACCAGTTACTTTGCAATTTTGCATGGGGAAT
32276190 CTGTTTAGGA
Statistics
Matches: 92, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
98 38 0.41
99 1 0.01
100 2 0.02
101 51 0.55
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (98 bp):
TATAGGTTGATTCATTAACCTTCTCAAAAACACATTGGCTATGCGTTTCTCCAAAACCAACTGGA
GTACCAGTTACTTTGCAATTTTGCATGGGGAAT
Found at i:32281178 original size:5 final size:5
Alignment explanation
Indices: 32281168--32281193 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
32281158 TGAGCATTCG
32281168 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
32281194 AATATTTGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:32282319 original size:9 final size:9
Alignment explanation
Indices: 32282302--32282332 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
32282292 TCGAGTTGAT
32282302 TCGAATAAC
1 TCGAATAAC
*
32282311 TCGATTAAC
1 TCGAATAAC
32282320 TCGAATAAC
1 TCGAATAAC
32282329 TCGA
1 TCGA
32282333 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:32286287 original size:5 final size:5
Alignment explanation
Indices: 32286277--32286302 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
32286267 TGAGCATTCG
32286277 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
32286303 AATATTTGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:32287426 original size:9 final size:9
Alignment explanation
Indices: 32287409--32287439 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
32287399 TCGAGTTGAT
32287409 TCGAATAAC
1 TCGAATAAC
*
32287418 TCGATTAAC
1 TCGAATAAC
32287427 TCGAATAAC
1 TCGAATAAC
32287436 TCGA
1 TCGA
32287440 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:32292153 original size:30 final size:29
Alignment explanation
Indices: 32292117--32292205 Score: 78
Period size: 30 Copynumber: 3.1 Consensus size: 29
32292107 GCCCGGCCCG
32292117 AAAATATATTAAATATATATTTTTATGTTT
1 AAAATATA-TAAATATATATTTTTATGTTT
* *
32292147 AAAATATA-ATAGTTTA-AGTTTTTTATGTTT
1 AAAATATATA-AATATATA--TTTTTATGTTT
* *
32292177 AAAA-A-ATATATATTTATTTTTATGTTT
1 AAAATATATAAATATATATTTTTATGTTT
32292204 AA
1 AA
32292206 GTTTTTAGTT
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
27 13 0.27
28 5 0.10
29 7 0.15
30 23 0.48
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.53
Consensus pattern (29 bp):
AAAATATATAAATATATATTTTTATGTTT
Found at i:32294401 original size:16 final size:16
Alignment explanation
Indices: 32294380--32294421 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
32294370 AATAATTTGA
*
32294380 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
32294396 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
32294412 TAGTTTTAAT
1 TAATTTTAAT
32294422 TTTATTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:32295373 original size:35 final size:37
Alignment explanation
Indices: 32295334--32295402 Score: 97
Period size: 36 Copynumber: 1.9 Consensus size: 37
32295324 TTCAAAAAAT
32295334 TATATTATAA-AAATTTTAAATAAATA-AGTTTTAAA
1 TATATTATAATAAATTTTAAATAAATACAGTTTTAAA
* * *
32295369 TATATTTTAATAAATTTTAATTAATTACAGTTTT
1 TATATTATAATAAATTTTAAATAAATACAGTTTT
32295403 CAAAATAAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
35 9 0.31
36 14 0.48
37 6 0.21
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.49
Consensus pattern (37 bp):
TATATTATAATAAATTTTAAATAAATACAGTTTTAAA
Found at i:32297747 original size:143 final size:143
Alignment explanation
Indices: 32297489--32297777 Score: 481
Period size: 143 Copynumber: 2.0 Consensus size: 143
32297479 TAATTAAAGT
* * *
32297489 TCAGAGACTAAATTGTAAAAGTCTAATCGTTATTGATTTTTATATTGGAAAATGTTCGATGACCT
1 TCAGAGACTAAATTGTAAAAGTCCAATCGCTATTGAATTTTATATTGGAAAATGTTCGATGACCT
* *
32297554 AATCGGTAATTAACCAAGGGACCTAAATGGAAATTAACTCATTGTTTCTTATAAGATAGTGGATG
66 AATCGGTAATTAACCAAGGGACCTAAATAGAAATTAACTCATTGTTTCTTATAAGATAATGGATG
32297619 ATAATGATGATAG
131 ATAATGATGATAG
* *
32297632 TCAGAGATTAAATTGTAAAAGTCCAATCGCTATTGAATTTTATATTGGAAAATGTTTGATGACCT
1 TCAGAGACTAAATTGTAAAAGTCCAATCGCTATTGAATTTTATATTGGAAAATGTTCGATGACCT
**
32297697 AATTC-GTAATTAACCAAGGGACCTAAATAGTTATTAACTCATTGTTTCTTATAAGATAATGGAT
66 AA-TCGGTAATTAACCAAGGGACCTAAATAGAAATTAACTCATTGTTTCTTATAAGATAATGGAT
32297761 GATAATGATGATAG
130 GATAATGATGATAG
32297775 TCA
1 TCA
32297778 TTTAACTTTG
Statistics
Matches: 136, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
143 134 0.99
144 2 0.01
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.35
Consensus pattern (143 bp):
TCAGAGACTAAATTGTAAAAGTCCAATCGCTATTGAATTTTATATTGGAAAATGTTCGATGACCT
AATCGGTAATTAACCAAGGGACCTAAATAGAAATTAACTCATTGTTTCTTATAAGATAATGGATG
ATAATGATGATAG
Found at i:32298848 original size:39 final size:39
Alignment explanation
Indices: 32298797--32298882 Score: 129
Period size: 39 Copynumber: 2.2 Consensus size: 39
32298787 TTGGTTTATG
* * *
32298797 TCGATGAGGTGCAGAGCGCAAATTTATACTTTGGACGT-
1 TCGATGAGGTGCAAAGCACAAATTTATACTCTGGACGTC
32298835 TCTGATGAGGTGCAAAGCACAAATTTATACTCTGGACGTC
1 TC-GATGAGGTGCAAAGCACAAATTTATACTCTGGACGTC
32298875 TCGATGAG
1 TCGATGAG
32298883 CCAATAGGTG
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
38 2 0.05
39 39 0.91
40 2 0.05
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (39 bp):
TCGATGAGGTGCAAAGCACAAATTTATACTCTGGACGTC
Found at i:32313273 original size:26 final size:26
Alignment explanation
Indices: 32313240--32313293 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
32313230 ACCTAGTTAA
32313240 TTAATTAATGTCTTAATGTCGAAAAT
1 TTAATTAATGTCTTAATGTCGAAAAT
32313266 TTAATTAATGTCTTAATGTCGAAAAT
1 TTAATTAATGTCTTAATGTCGAAAAT
32313292 TT
1 TT
32313294 GAAAATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.37, C:0.07, G:0.11, T:0.44
Consensus pattern (26 bp):
TTAATTAATGTCTTAATGTCGAAAAT
Found at i:32325444 original size:17 final size:17
Alignment explanation
Indices: 32325415--32325460 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
32325405 TTATTATAAT
*
32325415 TTTTAATATATTTGTGTA
1 TTTTAATA-ATTTGTATA
*
32325433 TTTTAATAATTTTTATA
1 TTTTAATAATTTGTATA
*
32325450 TTTTAAGAATT
1 TTTTAATAATT
32325461 AAGATCAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 17 0.68
18 8 0.32
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.61
Consensus pattern (17 bp):
TTTTAATAATTTGTATA
Found at i:32325950 original size:30 final size:30
Alignment explanation
Indices: 32325910--32325998 Score: 100
Period size: 30 Copynumber: 3.2 Consensus size: 30
32325900 TTAATATAAT
32325910 ATTTGATATTTGAATATGATATTTTTTTTA
1 ATTTGATATTTGAATATGATATTTTTTTTA
*
32325940 ATTTGGTATTT--A-A-G-T-TTTTTTTTA
1 ATTTGATATTTGAATATGATATTTTTTTTA
* * *
32325964 ATTTGATACTCGAATTTGATATTTTTTTTA
1 ATTTGATATTTGAATATGATATTTTTTTTA
32325994 ATTTG
1 ATTTG
32325999 GTACCTAATT
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
24 17 0.35
25 1 0.02
26 2 0.04
27 1 0.02
28 2 0.04
29 1 0.02
30 24 0.50
ACGTcount: A:0.26, C:0.02, G:0.11, T:0.61
Consensus pattern (30 bp):
ATTTGATATTTGAATATGATATTTTTTTTA
Found at i:32326008 original size:29 final size:29
Alignment explanation
Indices: 32325926--32326013 Score: 96
Period size: 30 Copynumber: 3.2 Consensus size: 29
32325916 TATTTGAATA
**
32325926 TGATATTTTTTTTAATTTGGTATTTAA--
1 TGATATTTTTTTTAATTTGGTACCTAATT
* *
32325953 -G-T-TTTTTTTTAATTTGATACTCGAATT
1 TGATATTTTTTTTAATTTGGTAC-CTAATT
32325980 TGATATTTTTTTTAATTTGGTACCTAATT
1 TGATATTTTTTTTAATTTGGTACCTAATT
32326009 TGATA
1 TGATA
32326014 CTTGAATTTG
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
24 16 0.33
25 3 0.06
26 1 0.02
28 1 0.02
29 11 0.22
30 17 0.35
ACGTcount: A:0.25, C:0.05, G:0.11, T:0.59
Consensus pattern (29 bp):
TGATATTTTTTTTAATTTGGTACCTAATT
Found at i:32327049 original size:18 final size:17
Alignment explanation
Indices: 32327019--32327063 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
32327009 AGGCACCAAC
**
32327019 AATAAAAATAATATTTT
1 AATAAAAATAATAAATT
32327036 AATAAAAATAAATAAATT
1 AATAAAAAT-AATAAATT
32327054 AATAATAAAT
1 AATAA-AAAT
32327064 TTTAAAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 9 0.38
18 11 0.46
19 4 0.17
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
AATAAAAATAATAAATT
Found at i:32331321 original size:18 final size:19
Alignment explanation
Indices: 32331298--32331342 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
32331288 AAATGTACTA
32331298 ATTAATTT-TTTGGACCAC
1 ATTAATTTCTTTGGACCAC
32331316 ATTAATTTCTTTGGACCAC
1 ATTAATTTCTTTGGACCAC
32331335 ATTAATTT
1 ATTAATTT
32331343 AAGATCTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 8 0.31
19 18 0.69
ACGTcount: A:0.29, C:0.16, G:0.09, T:0.47
Consensus pattern (19 bp):
ATTAATTTCTTTGGACCAC
Found at i:32331927 original size:26 final size:27
Alignment explanation
Indices: 32331898--32331956 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
32331888 CTTGAACTTG
32331898 ACTTTTTTT-CCTAATTTGATACATAA
1 ACTTTTTTTACCTAATTTGATACATAA
* * *
32331924 ACTTTTTTTATCTAATTTGGTACCTAA
1 ACTTTTTTTACCTAATTTGATACATAA
32331951 ACTTTT
1 ACTTTT
32331957 CAAATGTGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 9 0.31
27 20 0.69
ACGTcount: A:0.27, C:0.15, G:0.05, T:0.53
Consensus pattern (27 bp):
ACTTTTTTTACCTAATTTGATACATAA
Found at i:32332059 original size:21 final size:20
Alignment explanation
Indices: 32332021--32332059 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
32332011 ATGATATAAT
*
32332021 TAAGTCTTTGTATCTATGGC
1 TAAGTCTTTGTATATATGGC
*
32332041 TAAGTGCTTTGTTTATATG
1 TAAGT-CTTTGTATATATG
32332060 TTAAAGGTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.21, C:0.10, G:0.21, T:0.49
Consensus pattern (20 bp):
TAAGTCTTTGTATATATGGC
Found at i:32332342 original size:18 final size:17
Alignment explanation
Indices: 32332319--32332383 Score: 62
Period size: 18 Copynumber: 3.8 Consensus size: 17
32332309 CTTTAATGTA
32332319 TTTTTTTTCTTCTTTCT
1 TTTTTTTTCTTCTTTCT
*
32332336 TTCTTTTTTC-ACTTTTCT
1 TT-TTTTTTCTTC-TTTCT
32332354 TTTCTTTTTCTT-TTTCT
1 TTT-TTTTTCTTCTTTCT
* *
32332371 TTTGTTTGCTTCT
1 TTTTTTTTCTTCT
32332384 GTAAACTATT
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
16 6 0.15
17 13 0.33
18 20 0.51
ACGTcount: A:0.02, C:0.18, G:0.03, T:0.77
Consensus pattern (17 bp):
TTTTTTTTCTTCTTTCT
Found at i:32332368 original size:17 final size:18
Alignment explanation
Indices: 32332321--32332373 Score: 65
Period size: 18 Copynumber: 2.9 Consensus size: 18
32332311 TTAATGTATT
32332321 TTTTTTCTTCTTTC-TTTC
1 TTTTTTCTT-TTTCTTTTC
*
32332339 TTTTTTCACTTTTCTTTTC
1 TTTTTTC-TTTTTCTTTTC
32332358 -TTTTTCTTTTTCTTTT
1 TTTTTTCTTTTTCTTTT
32332374 GTTTGCTTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 9 0.29
18 17 0.55
19 5 0.16
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTTTCTTTTTCTTTTC
Found at i:32338879 original size:39 final size:42
Alignment explanation
Indices: 32338834--32338928 Score: 108
Period size: 45 Copynumber: 2.3 Consensus size: 42
32338824 GTGGATATGA
*
32338834 TATTTCAAATA-T-T-TTTATATGTGAAATATTTCA-ATTAAT
1 TATTTCAAATATTATGTTTACATGTGAAATATTTCAGA-TAAT
32338873 TATTTCAAATATCATTATGTTTACATGTGAAATATTTCAGATAAT
1 TATTTC-AA-AT-ATTATGTTTACATGTGAAATATTTCAGATAAT
*
32338918 TATTTTAAATA
1 TATTTCAAATA
32338929 CACATACAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 11
0.78 0.03 0.18
Matches are distributed among these distances:
39 6 0.13
40 2 0.04
41 2 0.04
42 2 0.04
43 3 0.06
44 3 0.06
45 28 0.60
46 1 0.02
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (42 bp):
TATTTCAAATATTATGTTTACATGTGAAATATTTCAGATAAT
Found at i:32344261 original size:22 final size:21
Alignment explanation
Indices: 32344230--32344271 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
32344220 TTTTAAATTT
*
32344230 AAAAAAATCACGAAAAGATGTG
1 AAAAAAATCAC-AAAAAATGTG
*
32344252 AAAAACATCACAAAAAATGT
1 AAAAAAATCACAAAAAATGT
32344272 TTTAATTTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.62, C:0.12, G:0.12, T:0.14
Consensus pattern (21 bp):
AAAAAAATCACAAAAAATGTG
Found at i:32344361 original size:62 final size:59
Alignment explanation
Indices: 32344226--32344363 Score: 154
Period size: 62 Copynumber: 2.3 Consensus size: 59
32344216 ATTTTTTTAA
* *
32344226 ATTTAAAAAAATCACGAAAAGATGTGAAAAACATCACAAAAAATGTTTTAATTTGGTAAG
1 ATTT-AAAAAATCACGAAAAAATGTGAAAAAAATCACAAAAAATGTTTTAATTTGGTAAG
* * *
32344286 ATTTAATAAATCACGAAAAAATGTGAAAAAAAAAATCACCAAAAATGTTTT-GTTTGGTACA-
1 ATTTAAAAAATCACGAAAAAATGTG---AAAAAAATCACAAAAAATGTTTTAATTTGGTA-AG
*
32344347 TTTTAAAAACATCACGA
1 ATTTAAAAA-ATCACGA
32344364 TATATCTTAA
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
59 19 0.29
60 4 0.06
61 14 0.21
62 29 0.44
ACGTcount: A:0.51, C:0.10, G:0.12, T:0.28
Consensus pattern (59 bp):
ATTTAAAAAATCACGAAAAAATGTGAAAAAAATCACAAAAAATGTTTTAATTTGGTAAG
Found at i:32345997 original size:11 final size:11
Alignment explanation
Indices: 32345981--32346013 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
32345971 TTGGATTTTC
32345981 ACAATTTTTAA
1 ACAATTTTTAA
32345992 ACAA-TTTTAA
1 ACAATTTTTAA
32346002 AGCAATTTTTAA
1 A-CAATTTTTAA
32346014 TCATTTTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 7 0.35
11 7 0.35
12 6 0.30
ACGTcount: A:0.45, C:0.09, G:0.03, T:0.42
Consensus pattern (11 bp):
ACAATTTTTAA
Found at i:32346109 original size:20 final size:20
Alignment explanation
Indices: 32346081--32346135 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
32346071 TAAGAACTTT
* *
32346081 ATAACTTTTAATATTTTATA
1 ATAAATTTTAATATTTTAAA
*
32346101 AT-AATTTTTATATTTTTAAA
1 ATAAATTTTAATA-TTTTAAA
32346121 ATAAATTTTAA-ATTT
1 ATAAATTTTAATATTT
32346136 CCTAAATATT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
19 11 0.38
20 11 0.38
21 7 0.24
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (20 bp):
ATAAATTTTAATATTTTAAA
Found at i:32346113 original size:19 final size:19
Alignment explanation
Indices: 32346081--32346135 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 19
32346071 TAAGAACTTT
* *
32346081 ATAACTTTTAATATTTTATA
1 ATAA-TTTTTATATTTTAAA
32346101 ATAATTTTTATATTTTTAAA
1 ATAATTTTTATA-TTTTAAA
* *
32346121 ATAAATTTTAAATTT
1 ATAATTTTTATATTT
32346136 CCTAAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 10 0.33
20 20 0.67
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (19 bp):
ATAATTTTTATATTTTAAA
Found at i:32356472 original size:13 final size:14
Alignment explanation
Indices: 32356439--32356490 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
32356429 AATAATTAAT
*
32356439 TAAACATAAAAGAAA
1 TAAA-ATAAAGGAAA
32356454 TAAAATAAAGGAAA
1 TAAAATAAAGGAAA
* *
32356468 T-AAATAAAGTAAGT
1 TAAAATAAAGGAA-A
32356482 TAAAATAAA
1 TAAAATAAA
32356491 AAGGAAAAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
13 10 0.31
14 11 0.34
15 11 0.34
ACGTcount: A:0.69, C:0.02, G:0.10, T:0.19
Consensus pattern (14 bp):
TAAAATAAAGGAAA
Found at i:32357208 original size:3 final size:3
Alignment explanation
Indices: 32357200--32357226 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
32357190 GTGAGGTAAG
32357200 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
32357227 GAGTGGGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:32359204 original size:24 final size:24
Alignment explanation
Indices: 32359177--32359226 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
32359167 AAGTGTCGTC
32359177 TGGCATTGATTATCAAGAAACCTT
1 TGGCATTGATTATCAAGAAACCTT
32359201 TGGCATTGATTATCAAGAAACCTT
1 TGGCATTGATTATCAAGAAACCTT
32359225 TG
1 TG
32359227 CTCCCGTTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (24 bp):
TGGCATTGATTATCAAGAAACCTT
Found at i:32359512 original size:24 final size:24
Alignment explanation
Indices: 32359485--32359536 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
32359475 GCAAGTGTCG
32359485 TTTGGCATTGATTATCAAGAAACC
1 TTTGGCATTGATTATCAAGAAACC
32359509 TTTGGCATTGATTATCAAGAAACC
1 TTTGGCATTGATTATCAAGAAACC
32359533 TTTG
1 TTTG
32359537 CTCCCGTTGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (24 bp):
TTTGGCATTGATTATCAAGAAACC
Found at i:32359585 original size:310 final size:311
Alignment explanation
Indices: 32359020--32359641 Score: 1201
Period size: 310 Copynumber: 2.0 Consensus size: 311
32359010 CCAAATTGGA
32359020 AGTTAGTAATTATGGAGGAAATGAATGCTTTGAAGAAGAACAATACTTGGGAGATAGTAAATTTA
1 AGTTAGTAATTATGGAGGAAATGAATGCTTTGAAGAAGAACAATACTTGGGAGATAGTAAATTTA
32359085 CCCAAAGATAAACAAATTGTGGGATGTAAATGGTATTCAACGTGAAATGCAATGTTGATGGAAAT
66 CCCAAAGATAAACAAATTGTGGGATGTAAATGG--TTCAACGTGAAATGCAATGTTGATGGAAAT
32359150 ATATAAAGGTATAAGGCAAGTGTCGTCTGGCATTGATTATCAAGAAACCTTTGGCATTGATTATC
129 ATATAAAGGTATAAGGCAAGTGTCGTCTGGCATTGATTATCAAGAAACCTTTGGCATTGATTATC
*
32359215 AAGAAACCTTTGCTCCCGTTGTGAAACTCAATTCAATTCAAATTTTATTTTCCTTGGCTGTGAAT
194 AAGAAACCTTTGCTCCCGTTGCGAAACTCAATTCAATTCAAATTTTATTTTCCTTGGCTGTGAAT
32359280 CAAAATTGGCCCTTATAGCAGTTGGATATTAAGAATGCTTTTCTAAATGATGG
259 CAAAATTGGCCCTTATAGCAGTTGGATATTAAGAATGCTTTTCTAAATGATGG
32359333 AGTTAGTAATTATGGAGGAAATGAATGCTTTGAAGAAGAACAATACTTGGGAGATAGTAAATTTA
1 AGTTAGTAATTATGGAGGAAATGAATGCTTTGAAGAAGAACAATACTTGGGAGATAGTAAATTTA
32359398 CCCAAAGATAAACAAATTGTGGGATGTAAATGG-TCAACGTGAAATGCAATGTTGATGGAAATAT
66 CCCAAAGATAAACAAATTGTGGGATGTAAATGGTTCAACGTGAAATGCAATGTTGATGGAAATAT
*
32359462 ATAAAGGTATAAGGCAAGTGTCGTTTGGCATTGATTATCAAGAAACCTTTGGCATTGATTATCAA
131 ATAAAGGTATAAGGCAAGTGTCGTCTGGCATTGATTATCAAGAAACCTTTGGCATTGATTATCAA
32359527 GAAACCTTTGCTCCCGTTGCGAAACTCAATTCAATTCAAATTTTATTTTCCTTGGCTGTGAATCA
196 GAAACCTTTGCTCCCGTTGCGAAACTCAATTCAATTCAAATTTTATTTTCCTTGGCTGTGAATCA
32359592 AAATTGGCCCTTATAGCAGTTGGATATTAAGAATGCTTTTCTAAATGATG
261 AAATTGGCCCTTATAGCAGTTGGATATTAAGAATGCTTTTCTAAATGATG
32359642 ATTTTGAAGA
Statistics
Matches: 307, Mismatches: 2, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
310 209 0.68
313 98 0.32
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.32
Consensus pattern (311 bp):
AGTTAGTAATTATGGAGGAAATGAATGCTTTGAAGAAGAACAATACTTGGGAGATAGTAAATTTA
CCCAAAGATAAACAAATTGTGGGATGTAAATGGTTCAACGTGAAATGCAATGTTGATGGAAATAT
ATAAAGGTATAAGGCAAGTGTCGTCTGGCATTGATTATCAAGAAACCTTTGGCATTGATTATCAA
GAAACCTTTGCTCCCGTTGCGAAACTCAATTCAATTCAAATTTTATTTTCCTTGGCTGTGAATCA
AAATTGGCCCTTATAGCAGTTGGATATTAAGAATGCTTTTCTAAATGATGG
Found at i:32366015 original size:17 final size:17
Alignment explanation
Indices: 32365993--32366029 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
32365983 TTAAAAATAA
32365993 ATAAAATCTGATATTTT
1 ATAAAATCTGATATTTT
* *
32366010 ATAAAATTTTATATTTT
1 ATAAAATCTGATATTTT
32366027 ATA
1 ATA
32366030 CATTTTTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (17 bp):
ATAAAATCTGATATTTT
Found at i:32366036 original size:17 final size:18
Alignment explanation
Indices: 32366003--32366047 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
32365993 ATAAAATCTG
32366003 ATATTTTATAAA-ATTTT
1 ATATTTTATAAATATTTT
* *
32366020 ATATTTTATACATTTTTT
1 ATATTTTATAAATATTTT
32366038 ATAGTTTTAT
1 ATA-TTTTAT
32366048 TTTATATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 11 0.46
18 7 0.29
19 6 0.25
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (18 bp):
ATATTTTATAAATATTTT
Found at i:32366334 original size:27 final size:23
Alignment explanation
Indices: 32366303--32366357 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 23
32366293 AAAAACTATT
32366303 TTTAATATTTTTACAAATTTATATATA
1 TTTAAT-TTTTT--AAATTT-TATATA
*
32366330 TTTAATTTTTTAGATTTTATATA
1 TTTAATTTTTTAAATTTTATATA
32366353 TTTAA
1 TTTAA
32366358 AATATAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 11 0.41
24 5 0.19
26 5 0.19
27 6 0.22
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (23 bp):
TTTAATTTTTTAAATTTTATATA
Found at i:32366978 original size:11 final size:11
Alignment explanation
Indices: 32366958--32366987 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
32366948 TTTAAAAATA
32366958 AAAAAGTATTTT
1 AAAAA-TATTTT
32366970 AAAAATATTTT
1 AAAAATATTTT
32366981 AAAAATA
1 AAAAATA
32366988 ATAAAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:32367232 original size:41 final size:41
Alignment explanation
Indices: 32367175--32367256 Score: 128
Period size: 41 Copynumber: 2.0 Consensus size: 41
32367165 GGCCGGACTG
* * *
32367175 CCCGGCCCATGATCACCTCTATTGAGGTGTCAGTTAATGAA
1 CCCGGCCCATGATCACCTCTATTAAGGAGTCAATTAATGAA
*
32367216 CCCGGCCCATGATCACCTTTATTAAGGAGTCAATTAATGAA
1 CCCGGCCCATGATCACCTCTATTAAGGAGTCAATTAATGAA
32367257 TATATCCCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (41 bp):
CCCGGCCCATGATCACCTCTATTAAGGAGTCAATTAATGAA
Found at i:32367423 original size:15 final size:15
Alignment explanation
Indices: 32367403--32367432 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
32367393 AAACCCTAAA
32367403 ATCTAATATCATTTC
1 ATCTAATATCATTTC
32367418 ATCTAATATCATTTC
1 ATCTAATATCATTTC
32367433 TGGTTCATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.20, G:0.00, T:0.47
Consensus pattern (15 bp):
ATCTAATATCATTTC
Found at i:32368520 original size:102 final size:102
Alignment explanation
Indices: 32368344--32368547 Score: 408
Period size: 102 Copynumber: 2.0 Consensus size: 102
32368334 CATAATATAT
32368344 TTGATAGTTGAGTGATAAAAAAAACTAAACATAGACTCCGGTTTCAGTGGCGATGGTGTGCTTTG
1 TTGATAGTTGAGTGATAAAAAAAACTAAACATAGACTCCGGTTTCAGTGGCGATGGTGTGCTTTG
32368409 TTCCGATGGGGATCGGAACACAAAGAAAGTTAGATTC
66 TTCCGATGGGGATCGGAACACAAAGAAAGTTAGATTC
32368446 TTGATAGTTGAGTGATAAAAAAAACTAAACATAGACTCCGGTTTCAGTGGCGATGGTGTGCTTTG
1 TTGATAGTTGAGTGATAAAAAAAACTAAACATAGACTCCGGTTTCAGTGGCGATGGTGTGCTTTG
32368511 TTCCGATGGGGATCGGAACACAAAGAAAGTTAGATTC
66 TTCCGATGGGGATCGGAACACAAAGAAAGTTAGATTC
32368548 AAGGAAGGGG
Statistics
Matches: 102, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
102 102 1.00
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.27
Consensus pattern (102 bp):
TTGATAGTTGAGTGATAAAAAAAACTAAACATAGACTCCGGTTTCAGTGGCGATGGTGTGCTTTG
TTCCGATGGGGATCGGAACACAAAGAAAGTTAGATTC
Found at i:32371652 original size:41 final size:41
Alignment explanation
Indices: 32371595--32371676 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
32371585 CGTGGTGATA
32371595 TTAATTTTTTAAGGAAGTCGATCACTAATGATGAAATTAAG
1 TTAATTTTTTAAGGAAGTCGATCACTAATGATGAAATTAAG
32371636 TTAATTTTTTAAGGAAGTCGATCACTAATGATGAAATTAAG
1 TTAATTTTTTAAGGAAGTCGATCACTAATGATGAAATTAAG
32371677 GATGCCCTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.39, C:0.07, G:0.17, T:0.37
Consensus pattern (41 bp):
TTAATTTTTTAAGGAAGTCGATCACTAATGATGAAATTAAG
Found at i:32372058 original size:16 final size:16
Alignment explanation
Indices: 32372037--32372069 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
32372027 CGATTAAAAT
32372037 TGATCTGGAGAAAGCC
1 TGATCTGGAGAAAGCC
32372053 TGATCTGGAGAAAGCC
1 TGATCTGGAGAAAGCC
32372069 T
1 T
32372070 ATGATAGAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.21
Consensus pattern (16 bp):
TGATCTGGAGAAAGCC
Found at i:32372377 original size:171 final size:171
Alignment explanation
Indices: 32372092--32372433 Score: 684
Period size: 171 Copynumber: 2.0 Consensus size: 171
32372082 ATAGATTTTA
32372092 TTCATAAGCAGCAGGTATTCCTGAGTATCTCAGTAAAGTTATTATATCCTCTATTTCAAATCTAC
1 TTCATAAGCAGCAGGTATTCCTGAGTATCTCAGTAAAGTTATTATATCCTCTATTTCAAATCTAC
32372157 TATGCAGGTTATGTAGAATGCTGTTCTTTTGTCTAAATTTAGACCTGCCAGAGGCATCAGACAAG
66 TATGCAGGTTATGTAGAATGCTGTTCTTTTGTCTAAATTTAGACCTGCCAGAGGCATCAGACAAG
32372222 GGTGCTATTTCAAATCTACTATGCAGGTTATGTAGAATGCT
131 GGTGCTATTTCAAATCTACTATGCAGGTTATGTAGAATGCT
32372263 TTCATAAGCAGCAGGTATTCCTGAGTATCTCAGTAAAGTTATTATATCCTCTATTTCAAATCTAC
1 TTCATAAGCAGCAGGTATTCCTGAGTATCTCAGTAAAGTTATTATATCCTCTATTTCAAATCTAC
32372328 TATGCAGGTTATGTAGAATGCTGTTCTTTTGTCTAAATTTAGACCTGCCAGAGGCATCAGACAAG
66 TATGCAGGTTATGTAGAATGCTGTTCTTTTGTCTAAATTTAGACCTGCCAGAGGCATCAGACAAG
32372393 GGTGCTATTTCAAATCTACTATGCAGGTTATGTAGAATGCT
131 GGTGCTATTTCAAATCTACTATGCAGGTTATGTAGAATGCT
32372434 GTTCTTTTGT
Statistics
Matches: 171, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
171 171 1.00
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.35
Consensus pattern (171 bp):
TTCATAAGCAGCAGGTATTCCTGAGTATCTCAGTAAAGTTATTATATCCTCTATTTCAAATCTAC
TATGCAGGTTATGTAGAATGCTGTTCTTTTGTCTAAATTTAGACCTGCCAGAGGCATCAGACAAG
GGTGCTATTTCAAATCTACTATGCAGGTTATGTAGAATGCT
Found at i:32372433 original size:84 final size:84
Alignment explanation
Indices: 32372142--32372482 Score: 424
Period size: 84 Copynumber: 4.0 Consensus size: 84
32372132 ATTATATCCT
32372142 CTATTTCAAATCTACTATGCAGGTTATGTAGAATGCTGTTCTTTTGTCTAAATTTAGACCTGCCA
1 CTATTTCAAATCTACTATGCAGGTTATGTAGAATGCTGTTCTTTTGTCTAAATTTAGACCTGCCA
32372207 GAGGCATCAGACAAGGGTG
66 GAGGCATCAGACAAGGGTG
* ** * ** **
32372226 CTATTTCAAATCTACTATGCAGGTTATGTAGAATGCT-TTCATAAG-C-AGCAGGTATTCCTG--
1 CTATTTCAAATCTACTATGCAGGTTATGTAGAATGCTGTTCTTTTGTCTA-AATTTAGACCTGCC
** * * ***
32372286 AGTATCTCAGTAAAGTTATTATATCCT-
65 AG-A-GGCA-T-CAG--A-CA-AGGGTG
32372313 CTATTTCAAATCTACTATGCAGGTTATGTAGAATGCTGTTCTTTTGTCTAAATTTAGACCTGCCA
1 CTATTTCAAATCTACTATGCAGGTTATGTAGAATGCTGTTCTTTTGTCTAAATTTAGACCTGCCA
32372378 GAGGCATCAGACAAGGGTG
66 GAGGCATCAGACAAGGGTG
32372397 CTATTTCAAATCTACTATGCAGGTTATGTAGAATGCTGTTCTTTTGTCTAAATTTAGACCTGCCA
1 CTATTTCAAATCTACTATGCAGGTTATGTAGAATGCTGTTCTTTTGTCTAAATTTAGACCTGCCA
32372462 GAGGCATCAGACAAGGGTG
66 GAGGCATCAGACAAGGGTG
32372481 CT
1 CT
32372483 CGCTCTCTTC
Statistics
Matches: 212, Mismatches: 30, Indels: 30
0.78 0.11 0.11
Matches are distributed among these distances:
80 2 0.01
81 2 0.01
82 10 0.05
83 8 0.04
84 126 0.59
85 1 0.00
86 1 0.00
87 40 0.19
88 8 0.04
89 10 0.05
90 2 0.01
91 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (84 bp):
CTATTTCAAATCTACTATGCAGGTTATGTAGAATGCTGTTCTTTTGTCTAAATTTAGACCTGCCA
GAGGCATCAGACAAGGGTG
Found at i:32372694 original size:42 final size:38
Alignment explanation
Indices: 32372647--32372904 Score: 235
Period size: 42 Copynumber: 6.7 Consensus size: 38
32372637 TTGTGGTTTT
32372647 TGTGGGCATCTTATTAATGTAAGGAATATTCTGGATCGGTTC
1 TGTGGGCATCTTATTAATGTAAGGAATA--CT-GATC-GTTC
* * * * * *
32372689 TGTGGGCATCTTATTAATGCAAGGAAGAC-CAACATTT
1 TGTGGGCATCTTATTAATGTAAGGAATACTGATCGTTC
32372726 TGTGGGCATCTTATTAATGTAAGGAATA-T--T--TT-
1 TGTGGGCATCTTATTAATGTAAGGAATACTGATCGTTC
32372758 TGTGGGCATCTTATTAATGTAAGGAATATTCTGGATCGGTTC
1 TGTGGGCATCTTATTAATGTAAGGAATA--CT-GATC-GTTC
* * * * * *
32372800 TGTGGGCATCTTATTAATGCAAGGAAGAC-CAACATTT
1 TGTGGGCATCTTATTAATGTAAGGAATACTGATCGTTC
32372837 TGTGGGCATCTTATTAATGTAAGGAATATTCTGGATCGGTTC
1 TGTGGGCATCTTATTAATGTAAGGAATA--CT-GATC-GTTC
*
32372879 TGTGGGCATCTTATTAATGCAAGGAA
1 TGTGGGCATCTTATTAATGTAAGGAA
32372905 GACCAACATT
Statistics
Matches: 178, Mismatches: 22, Indels: 32
0.77 0.09 0.14
Matches are distributed among these distances:
32 28 0.16
33 2 0.01
35 1 0.01
37 56 0.31
38 5 0.03
39 1 0.01
40 2 0.01
41 4 0.02
42 79 0.44
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.36
Consensus pattern (38 bp):
TGTGGGCATCTTATTAATGTAAGGAATACTGATCGTTC
Found at i:32372762 original size:32 final size:32
Alignment explanation
Indices: 32372723--32372787 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
32372713 AAGACCAACA
32372723 TTTTGTGGGCATCTTATTAATGTAAGGAATAT
1 TTTTGTGGGCATCTTATTAATGTAAGGAATAT
32372755 TTTTGTGGGCATCTTATTAATGTAAGGAATAT
1 TTTTGTGGGCATCTTATTAATGTAAGGAATAT
32372787 T
1 T
32372788 CTGGATCGGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.28, C:0.06, G:0.22, T:0.45
Consensus pattern (32 bp):
TTTTGTGGGCATCTTATTAATGTAAGGAATAT
Found at i:32372837 original size:111 final size:111
Alignment explanation
Indices: 32372643--32372866 Score: 448
Period size: 111 Copynumber: 2.0 Consensus size: 111
32372633 GGACTTGTGG
32372643 TTTTTGTGGGCATCTTATTAATGTAAGGAATATTCTGGATCGGTTCTGTGGGCATCTTATTAATG
1 TTTTTGTGGGCATCTTATTAATGTAAGGAATATTCTGGATCGGTTCTGTGGGCATCTTATTAATG
32372708 CAAGGAAGACCAACATTTTGTGGGCATCTTATTAATGTAAGGAATA
66 CAAGGAAGACCAACATTTTGTGGGCATCTTATTAATGTAAGGAATA
32372754 TTTTTGTGGGCATCTTATTAATGTAAGGAATATTCTGGATCGGTTCTGTGGGCATCTTATTAATG
1 TTTTTGTGGGCATCTTATTAATGTAAGGAATATTCTGGATCGGTTCTGTGGGCATCTTATTAATG
32372819 CAAGGAAGACCAACATTTTGTGGGCATCTTATTAATGTAAGGAATA
66 CAAGGAAGACCAACATTTTGTGGGCATCTTATTAATGTAAGGAATA
32372865 TT
1 TT
32372867 CTGGATCGGT
Statistics
Matches: 113, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
111 113 1.00
ACGTcount: A:0.28, C:0.12, G:0.23, T:0.38
Consensus pattern (111 bp):
TTTTTGTGGGCATCTTATTAATGTAAGGAATATTCTGGATCGGTTCTGTGGGCATCTTATTAATG
CAAGGAAGACCAACATTTTGTGGGCATCTTATTAATGTAAGGAATA
Found at i:32372858 original size:79 final size:79
Alignment explanation
Indices: 32372755--32372916 Score: 324
Period size: 79 Copynumber: 2.1 Consensus size: 79
32372745 TAAGGAATAT
32372755 TTTTGTGGGCATCTTATTAATGTAAGGAATATTCTGGATCGGTTCTGTGGGCATCTTATTAATGC
1 TTTTGTGGGCATCTTATTAATGTAAGGAATATTCTGGATCGGTTCTGTGGGCATCTTATTAATGC
32372820 AAGGAAGACCAACA
66 AAGGAAGACCAACA
32372834 TTTTGTGGGCATCTTATTAATGTAAGGAATATTCTGGATCGGTTCTGTGGGCATCTTATTAATGC
1 TTTTGTGGGCATCTTATTAATGTAAGGAATATTCTGGATCGGTTCTGTGGGCATCTTATTAATGC
32372899 AAGGAAGACCAACA
66 AAGGAAGACCAACA
32372913 TTTT
1 TTTT
32372917 TTTCTCTAAA
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 83 1.00
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (79 bp):
TTTTGTGGGCATCTTATTAATGTAAGGAATATTCTGGATCGGTTCTGTGGGCATCTTATTAATGC
AAGGAAGACCAACA
Found at i:32373277 original size:32 final size:32
Alignment explanation
Indices: 32373236--32373304 Score: 120
Period size: 32 Copynumber: 2.2 Consensus size: 32
32373226 AGACTTCATG
32373236 ATCAAAACATATCCTTTCTTTTGAAGCTAGGT
1 ATCAAAACATATCCTTTCTTTTGAAGCTAGGT
*
32373268 ATCAAAACATATCCTTTCTTTTGAAGCTGGGT
1 ATCAAAACATATCCTTTCTTTTGAAGCTAGGT
*
32373300 TTCAA
1 ATCAA
32373305 CATTGTTTCT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (32 bp):
ATCAAAACATATCCTTTCTTTTGAAGCTAGGT
Found at i:32373693 original size:68 final size:68
Alignment explanation
Indices: 32373584--32373720 Score: 274
Period size: 68 Copynumber: 2.0 Consensus size: 68
32373574 GCTTTCGGAT
32373584 GGTGTGATTCAGCTTATTAAGGGTATTTCGCCTCCTCATCCATCTACTGGCTTTGATAAAATTTC
1 GGTGTGATTCAGCTTATTAAGGGTATTTCGCCTCCTCATCCATCTACTGGCTTTGATAAAATTTC
32373649 TAG
66 TAG
32373652 GGTGTGATTCAGCTTATTAAGGGTATTTCGCCTCCTCATCCATCTACTGGCTTTGATAAAATTTC
1 GGTGTGATTCAGCTTATTAAGGGTATTTCGCCTCCTCATCCATCTACTGGCTTTGATAAAATTTC
32373717 TAG
66 TAG
32373720 G
1 G
32373721 AGCCACACTT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 69 1.00
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (68 bp):
GGTGTGATTCAGCTTATTAAGGGTATTTCGCCTCCTCATCCATCTACTGGCTTTGATAAAATTTC
TAG
Found at i:32374549 original size:29 final size:29
Alignment explanation
Indices: 32374479--32374550 Score: 117
Period size: 29 Copynumber: 2.4 Consensus size: 29
32374469 ATTAGTTTGG
32374479 TATTTCTTATTTTCACCAAAAAAATGTGT
1 TATTTCTTATTTTCACCAAAAAAATGTGT
*
32374508 TATATCTTATTTTCACCAAAAAAATGTGT
1 TATTTCTTATTTTCACCAAAAAAATGTGT
*
32374537 TATTTACTTTTTTT
1 TATTT-CTTATTTT
32374551 GTTAAATGGT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
29 32 0.82
30 7 0.18
ACGTcount: A:0.32, C:0.12, G:0.06, T:0.50
Consensus pattern (29 bp):
TATTTCTTATTTTCACCAAAAAAATGTGT
Found at i:32375064 original size:35 final size:35
Alignment explanation
Indices: 32375018--32375085 Score: 136
Period size: 35 Copynumber: 1.9 Consensus size: 35
32375008 CGGTTGGTAT
32375018 AGATAAATAGAGGAAATAAACACAAAAAAAAAAAG
1 AGATAAATAGAGGAAATAAACACAAAAAAAAAAAG
32375053 AGATAAATAGAGGAAATAAACACAAAAAAAAAA
1 AGATAAATAGAGGAAATAAACACAAAAAAAAAA
32375086 GTTGATCCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.72, C:0.06, G:0.13, T:0.09
Consensus pattern (35 bp):
AGATAAATAGAGGAAATAAACACAAAAAAAAAAAG
Found at i:32380789 original size:18 final size:18
Alignment explanation
Indices: 32380766--32380819 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
32380756 AATTTTTATG
32380766 ATTGGGTTGGGTTGGGTA
1 ATTGGGTTGGGTTGGGTA
* *
32380784 ATTGGGTCGGGTTGGATA
1 ATTGGGTTGGGTTGGGTA
* *
32380802 CTTGGGTTTGGATTGGGT
1 ATTGGG-TTGGGTTGGGT
32380820 TTAGGTGAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
18 21 0.72
19 8 0.28
ACGTcount: A:0.11, C:0.04, G:0.46, T:0.39
Consensus pattern (18 bp):
ATTGGGTTGGGTTGGGTA
Found at i:32381092 original size:12 final size:12
Alignment explanation
Indices: 32381072--32381102 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
32381062 CCTCACACGC
*
32381072 CCGTTTGCTAGG
1 CCGTGTGCTAGG
32381084 CCGTGTGCTAGG
1 CCGTGTGCTAGG
32381096 CCGTGTG
1 CCGTGTG
32381103 AAGCTACTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.06, C:0.26, G:0.39, T:0.29
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:32384225 original size:13 final size:13
Alignment explanation
Indices: 32384204--32384233 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
32384194 CATGAGGATG
*
32384204 AAATGCAGTGCTA
1 AAATACAGTGCTA
32384217 AAATACAGTGCTA
1 AAATACAGTGCTA
32384230 AAAT
1 AAAT
32384234 GCAACCGTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.13, G:0.17, T:0.23
Consensus pattern (13 bp):
AAATACAGTGCTA
Found at i:32391839 original size:20 final size:20
Alignment explanation
Indices: 32391814--32391856 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
32391804 ATAACTTAAA
32391814 AATGGTATATTTACCATTTG
1 AATGGTATATTTACCATTTG
32391834 AATGGTATATTTACCATTTG
1 AATGGTATATTTACCATTTG
32391854 AAT
1 AAT
32391857 CCCTTACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.09, G:0.14, T:0.44
Consensus pattern (20 bp):
AATGGTATATTTACCATTTG
Found at i:32406002 original size:22 final size:22
Alignment explanation
Indices: 32405974--32406018 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
32405964 GTTGAACAAG
*
32405974 TTGAATTGGTTTAATTAAATTT
1 TTGAATTGGTTTAATAAAATTT
**
32405996 TTGAATTTTTTTAATAAAATTT
1 TTGAATTGGTTTAATAAAATTT
32406018 T
1 T
32406019 AATTATTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (22 bp):
TTGAATTGGTTTAATAAAATTT
Found at i:32413913 original size:18 final size:18
Alignment explanation
Indices: 32413886--32413920 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32413876 AGTTTTACAA
*
32413886 ATTTTTAAAATTCTTATG
1 ATTTTCAAAATTCTTATG
*
32413904 ATTTTCAAAATTTTTAT
1 ATTTTCAAAATTCTTAT
32413921 TTTTTAATTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (18 bp):
ATTTTCAAAATTCTTATG
Found at i:32413980 original size:27 final size:26
Alignment explanation
Indices: 32413904--32413988 Score: 61
Period size: 27 Copynumber: 3.2 Consensus size: 26
32413894 AATTCTTATG
*
32413904 ATTTTCAAAATT-TTT-ATTTTTTAATT
1 ATTTT-AAAATTATTTAATTTTTTCA-T
* *
32413930 ATTTTAAAA-TATTCCAATGATTTTCAT
1 ATTTTAAAATTATT-TAAT-TTTTTCAT
32413957 ATTTTAAAATTATTATAATTTTTTACA-
1 ATTTTAAAATTATT-TAATTTTTT-CAT
32413984 ATTTT
1 ATTTT
32413989 TGAAATATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 11
0.73 0.09 0.17
Matches are distributed among these distances:
24 1 0.02
25 6 0.13
26 5 0.11
27 21 0.45
28 14 0.30
ACGTcount: A:0.35, C:0.06, G:0.01, T:0.58
Consensus pattern (26 bp):
ATTTTAAAATTATTTAATTTTTTCAT
Found at i:32413986 original size:19 final size:19
Alignment explanation
Indices: 32413958--32414018 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
32413948 GATTTTCATA
* *
32413958 TTTTAAAATTATTATAATT
1 TTTTACAATTTTTATAATT
32413977 TTTTACAATTTTTGA-AATAT
1 TTTTACAATTTTT-ATAAT-T
* *
32413997 TTTAACAATTTTTTTAATT
1 TTTTACAATTTTTATAATT
32414016 TTT
1 TTT
32414019 AAACAGCTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
19 18 0.51
20 17 0.49
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (19 bp):
TTTTACAATTTTTATAATT
Found at i:32414019 original size:19 final size:19
Alignment explanation
Indices: 32413958--32414020 Score: 67
Period size: 20 Copynumber: 3.3 Consensus size: 19
32413948 GATTTTCATA
*
32413958 TTTTAA-AATTATTATAAT
1 TTTTAACAATTTTTATAAT
*
32413976 TTTTTACAATTTTTGA-AAT
1 TTTTAACAATTTTT-ATAAT
*
32413995 ATTTTAACAATTTTTTTAAT
1 -TTTTAACAATTTTTATAAT
32414015 TTTTAA
1 TTTTAA
32414021 ACAGCTTAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
18 5 0.14
19 15 0.41
20 17 0.46
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.59
Consensus pattern (19 bp):
TTTTAACAATTTTTATAAT
Found at i:32414110 original size:32 final size:31
Alignment explanation
Indices: 32414074--32414136 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 31
32414064 TTCTAAACAA
* *
32414074 TTTTTTGT-AATTTTATA-ATTTTTACAAGTT
1 TTTTTTTTCAATTTTAAATATTTTTACAA-TT
*
32414104 TTTTTTTTCATTTTTAAATATTTTTACAATT
1 TTTTTTTTCAATTTTAAATATTTTTACAATT
32414135 TT
1 TT
32414137 CGAATGATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
30 7 0.25
31 11 0.39
32 10 0.36
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.67
Consensus pattern (31 bp):
TTTTTTTTCAATTTTAAATATTTTTACAATT
Found at i:32419336 original size:25 final size:26
Alignment explanation
Indices: 32419302--32419363 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
32419292 AATGAATTTC
*
32419302 TCAAAATTTTAAC-AGGGTAAAATCG
1 TCAAAATTTTAACGAGGGTAAAACCG
* * *
32419327 TCAAAATTTTACCGAGGTTAAGACCG
1 TCAAAATTTTAACGAGGGTAAAACCG
32419353 TCAAAATTTTA
1 TCAAAATTTTA
32419364 TCAAATGGAT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
25 12 0.38
26 20 0.62
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.31
Consensus pattern (26 bp):
TCAAAATTTTAACGAGGGTAAAACCG
Found at i:32425516 original size:34 final size:34
Alignment explanation
Indices: 32425322--32425523 Score: 113
Period size: 34 Copynumber: 5.7 Consensus size: 34
32425312 CAAAAGAGTT
* * *
32425322 TGCGCCCAGCACTAGTCGGATAAACTGGCA-AATG
1 TGCGCCCAGCACTAGTCAGATAAAC-CGAAGAATG
** * **
32425356 TATGGCCAGCACTAGTCAGATAAATTGACAGAA-G
1 TGCGCCCAGCACTAGTCAGATAAACCGA-AGAATG
* * *
32425390 TTGCGCCCATCGCTAGTCAGATAAACCGACGAATAATTAG
1 -TGCGCCCAGCACTAGTCAGATAAA-C--CGAAGAA-T-G
* * ** * *
32425430 TGAGCCCAGCTCTAGTTGGATAAA-CTAATGATATT
1 TGCGCCCAGCACTAGTCAGATAAACCGAA-GA-ATG
* *
32425465 TGCGCCTAGCGCTAGTCAGATAAACCGAAGAATG
1 TGCGCCCAGCACTAGTCAGATAAACCGAAGAATG
*
32425499 TGTGCCCAGCACTAGTCAGATAAAC
1 TGCGCCCAGCACTAGTCAGATAAAC
32425524 TGACGAAAGT
Statistics
Matches: 123, Mismatches: 33, Indels: 24
0.68 0.18 0.13
Matches are distributed among these distances:
33 1 0.01
34 46 0.37
35 45 0.37
36 5 0.04
37 4 0.03
38 2 0.02
39 19 0.15
40 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.22
Consensus pattern (34 bp):
TGCGCCCAGCACTAGTCAGATAAACCGAAGAATG
Found at i:32425545 original size:69 final size:69
Alignment explanation
Indices: 32425321--32425546 Score: 204
Period size: 69 Copynumber: 3.2 Consensus size: 69
32425311 GCAAAAGAGT
* * ** * * * *
32425321 TTGCGCCCAGCACTAGTCGGATAAACTGGCAAATGTATGGCCAGCACTAGTCAGATAAATTGAC-
1 TTGCGCCCAGCGCTAGTCAGATAAACACGAAAATGTGTGCCCAGCACTAGTCAGATAAACTGACG
32425385 AGAAG
66 A-AAG
* * * **
32425390 TTGCGCCCATCGCTAGTCAGATAAACCGACGAATAATTAGTGAGCCCAGCTCTAGTTGGATAAAC
1 TTGCGCCCAGCGCTAGTCAGATAAA-C-ACGAA-AA-T-GTGTGCCCAGCACTAGTCAGATAAAC
* * * *
32425455 TAATGATAT
61 TGACGAAAG
*
32425464 TTGCGCCTAGCGCTAGTCAGATAAAC-CGAAGAATGTGTGCCCAGCACTAGTCAGATAAACTGAC
1 TTGCGCCCAGCGCTAGTCAGATAAACACGAA-AATGTGTGCCCAGCACTAGTCAGATAAACTGAC
32425528 GAAAG
65 GAAAG
*
32425533 TTGCGTCCAGCGCT
1 TTGCGCCCAGCGCT
32425547 GGCCAGATGA
Statistics
Matches: 121, Mismatches: 30, Indels: 12
0.74 0.18 0.07
Matches are distributed among these distances:
69 61 0.50
70 2 0.02
71 8 0.07
72 2 0.02
73 2 0.02
74 45 0.37
75 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.22
Consensus pattern (69 bp):
TTGCGCCCAGCGCTAGTCAGATAAACACGAAAATGTGTGCCCAGCACTAGTCAGATAAACTGACG
AAAG
Found at i:32427455 original size:20 final size:20
Alignment explanation
Indices: 32427432--32427491 Score: 54
Period size: 19 Copynumber: 3.1 Consensus size: 20
32427422 TAATATTTAT
32427432 TTTAATTTTAAAATATATAA
1 TTTAATTTTAAAATATATAA
* *
32427452 TTT-ATTATAAAA-ATATTTA
1 TTTAATTTTAAAATATA-TAA
* *
32427471 TTTATTTTTAACATATA-AA
1 TTTAATTTTAAAATATATAA
32427490 TT
1 TT
32427492 AAGAATAAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
18 3 0.10
19 16 0.52
20 9 0.29
21 3 0.10
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (20 bp):
TTTAATTTTAAAATATATAA
Found at i:32427486 original size:19 final size:19
Alignment explanation
Indices: 32427423--32427486 Score: 65
Period size: 20 Copynumber: 3.3 Consensus size: 19
32427413 TATAAAAAAT
*
32427423 AATATTTATTTTAATTTTAA
1 AATATTTA-TTTATTTTTAA
* * *
32427443 AATATATAATTTATTATAAA
1 AATAT-TTATTTATTTTTAA
32427463 AATATTTATTTATTTTTAA
1 AATATTTATTTATTTTTAA
*
32427482 CATAT
1 AATAT
32427487 AAATTAAGAA
Statistics
Matches: 35, Mismatches: 8, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
19 15 0.43
20 18 0.51
21 2 0.06
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.55
Consensus pattern (19 bp):
AATATTTATTTATTTTTAA
Found at i:32427500 original size:38 final size:39
Alignment explanation
Indices: 32427423--32427509 Score: 95
Period size: 38 Copynumber: 2.2 Consensus size: 39
32427413 TATAAAAAAT
* **
32427423 AATATTTATTTTAATTTTAAAATATATAATTTATTATAAA
1 AATATTTA-TTTAATTTTAAAATATATAATTAAGAATAAA
* *
32427463 AATATTTATTTATTTTTAACATATA-AATTAAGAATAAA
1 AATATTTATTTAATTTTAAAATATATAATTAAGAATAAA
* *
32427501 TAGATTTAT
1 AATATTTAT
32427510 ACATTTTAGA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
38 17 0.43
39 15 0.38
40 8 0.20
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.49
Consensus pattern (39 bp):
AATATTTATTTAATTTTAAAATATATAATTAAGAATAAA
Found at i:32433738 original size:9 final size:9
Alignment explanation
Indices: 32433724--32433751 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
32433714 TTTTGTTACA
32433724 ACAATTAAT
1 ACAATTAAT
32433733 ACAATTAAT
1 ACAATTAAT
32433742 ACAATTAAT
1 ACAATTAAT
32433751 A
1 A
32433752 ATTTGATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
ACAATTAAT
Found at i:32433772 original size:68 final size:68
Alignment explanation
Indices: 32433694--32433903 Score: 388
Period size: 68 Copynumber: 3.1 Consensus size: 68
32433684 TCAAGTTTGT
*
32433694 TTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
32433759 AAA
66 AAA
32433762 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
32433827 AAA
66 AAA
32433830 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATT-A-ACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
*
32433893 AAT
66 AAA
32433896 TTTACTAA
1 TTTACTAA
32433904 CAATTAATTT
Statistics
Matches: 140, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
66 27 0.19
67 1 0.01
68 112 0.80
ACGTcount: A:0.46, C:0.09, G:0.05, T:0.40
Consensus pattern (68 bp):
TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
AAA
Found at i:32433804 original size:9 final size:9
Alignment explanation
Indices: 32433792--32433819 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
32433782 TTTTATTACA
32433792 ACAATTAAT
1 ACAATTAAT
32433801 ACAATTAAT
1 ACAATTAAT
32433810 ACAATTAAT
1 ACAATTAAT
32433819 A
1 A
32433820 ATTTGATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
ACAATTAAT
Found at i:32433913 original size:16 final size:16
Alignment explanation
Indices: 32433892--32433933 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
32433882 AATAATTTGA
*
32433892 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
32433908 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
32433924 TAATTTTAAT
1 TAATTTTAAT
32433934 TTTATTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:32433922 original size:59 final size:66
Alignment explanation
Indices: 32433694--32433927 Score: 338
Period size: 68 Copynumber: 3.6 Consensus size: 66
32433684 TCAAGTTTGT
*
32433694 TTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAA-GTTAGATTTT-ATACAACAATTAATACAATTAATACAATTAATAATTTGAT
32433759 AAA
64 AAA
32433762 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAA-GTTAGATTTTA-TACAACAATTAATACAATTAATACAATTAATAATTTGAT
32433827 AAA
64 AAA
32433830 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATT-A-ACAATTAATAATTTGAT
1 TTTACTAATCAAA-GTTAGATTTTA-TACAACAATTAATACAATTAATACAATTAATAATTTGAT
*
32433893 AAT
64 AAA
*
32433896 TTTACTAA-C-AA-TTA-ATTTTA-ATAACAATTAAT
1 TTTACTAATCAAAGTTAGATTTTATACAACAATTAAT
32433928 TTTAATTTTA
Statistics
Matches: 162, Mismatches: 3, Indels: 11
0.92 0.02 0.06
Matches are distributed among these distances:
59 11 0.07
61 6 0.04
62 3 0.02
64 2 0.01
65 1 0.01
66 27 0.17
67 1 0.01
68 111 0.69
ACGTcount: A:0.46, C:0.09, G:0.04, T:0.41
Consensus pattern (66 bp):
TTTACTAATCAAAGTTAGATTTTATACAACAATTAATACAATTAATACAATTAATAATTTGATAA
A
Found at i:32436106 original size:63 final size:63
Alignment explanation
Indices: 32436005--32436123 Score: 211
Period size: 63 Copynumber: 1.9 Consensus size: 63
32435995 TCCCTTTGGT
* *
32436005 TATGCACTAGTTGATGGTCTGAGAGTCAATCGATCATATAAGTTGGGTAGAATCTGTGTAAAA
1 TATGCACTAGTTGATCGTCTGAGAGTCAATCGACCATATAAGTTGGGTAGAATCTGTGTAAAA
*
32436068 TATGCACTAGTTGATCGTCTGAGAGTCAATCGACCATATACGTTGGGTAGAATCTG
1 TATGCACTAGTTGATCGTCTGAGAGTCAATCGACCATATAAGTTGGGTAGAATCTG
32436124 ACTAAAACAG
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 53 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (63 bp):
TATGCACTAGTTGATCGTCTGAGAGTCAATCGACCATATAAGTTGGGTAGAATCTGTGTAAAA
Found at i:32437387 original size:20 final size:20
Alignment explanation
Indices: 32437362--32437405 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
32437352 GAAGTTGAAT
32437362 AGGCTAGCTATAGCAGTAAA
1 AGGCTAGCTATAGCAGTAAA
*
32437382 AGGCTAGCTATAGCTGTAAA
1 AGGCTAGCTATAGCAGTAAA
32437402 AGGC
1 AGGC
32437406 AAGTTTAGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.36, C:0.16, G:0.27, T:0.20
Consensus pattern (20 bp):
AGGCTAGCTATAGCAGTAAA
Found at i:32437416 original size:19 final size:20
Alignment explanation
Indices: 32437362--32437417 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
32437352 GAAGTTGAAT
* *
32437362 AGGCTAGCTATAGCAGTAAA
1 AGGCAAGCTATAGCTGTAAA
*
32437382 AGGCTAGCTATAGCTGTAAA
1 AGGCAAGCTATAGCTGTAAA
*
32437402 AGGCAAG-TTTAGCTGT
1 AGGCAAGCTATAGCTGT
32437418 CCTTTGCAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 8 0.24
20 25 0.76
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.25
Consensus pattern (20 bp):
AGGCAAGCTATAGCTGTAAA
Found at i:32445493 original size:18 final size:19
Alignment explanation
Indices: 32445466--32445535 Score: 61
Period size: 22 Copynumber: 3.4 Consensus size: 19
32445456 AATTCAAGAT
32445466 TTTTTGTTCTTCTCTTTTA
1 TTTTTGTTCTTCTCTTTTA
* *
32445485 TTTTT-TTCTTCTGTTTTCTG
1 TTTTTGTTCTTCT-CTTT-TA
32445505 TTTTCTGTTCTTTCTCTTTCTA
1 TTTT-TGTTC-TTCTCTTT-TA
32445527 CTTTTTGTT
1 -TTTTTGTT
32445536 TCTAAAAATA
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
18 7 0.17
19 8 0.20
20 5 0.12
21 1 0.02
22 12 0.29
23 8 0.20
ACGTcount: A:0.03, C:0.17, G:0.07, T:0.73
Consensus pattern (19 bp):
TTTTTGTTCTTCTCTTTTA
Found at i:32453488 original size:124 final size:124
Alignment explanation
Indices: 32453204--32453690 Score: 710
Period size: 124 Copynumber: 3.9 Consensus size: 124
32453194 CCTTGGTCTC
* * * *
32453204 TGCTCATAATTTGGCAACATGCCTTTCATTCAACTCACTATAGGAGGTGAGTTGATCAATCATTC
1 TGCTCGTAATCTGGCAACATGCCTCTCATTCAACTCACTGTAGGAGGTGAGTTGATCAATCATTC
* * * *
32453269 GTTCTTGAATGCTTGTGGGAATAGCCTTA-GGCCTGAGCCAATGGGCACTCCTTGAGAC
66 ATTCTTGAATGCTTGTGGGAATAGCCTTAGGGCCTAAGCTAATGGGCACTCCTTGAGAT
* * ** *
32453327 TGCTCGTAATCTAGCAACATTCCTCTCATTTGACTCACTGTAGGAGGTGAGTTTATCAATCATTC
1 TGCTCGTAATCTGGCAACATGCCTCTCATTCAACTCACTGTAGGAGGTGAGTTGATCAATCATTC
32453392 ATTCTTGAATGCTTGTGGGAATAGCCTTAGGGCCTAAGCTAATGGGCACTCCTTGAGAT
66 ATTCTTGAATGCTTGTGGGAATAGCCTTAGGGCCTAAGCTAATGGGCACTCCTTGAGAT
*
32453451 TGCTCCTAATCTGGCAACATGCCTCTCATTCAACTCACTGTAGGAGGTGAGTTGATCAATCATTC
1 TGCTCGTAATCTGGCAACATGCCTCTCATTCAACTCACTGTAGGAGGTGAGTTGATCAATCATTC
* * * *
32453516 ATTCTTGAATGCTTGTGGGAATAGCCTTGGGGCCTGAGCTAGTGGGCACTCCTTGAGTT
66 ATTCTTGAATGCTTGTGGGAATAGCCTTAGGGCCTAAGCTAATGGGCACTCCTTGAGAT
* ** * *
32453575 TGCTTGTAATCTGAAAACATGCCTCTTATTCGAA-TCACTTTAGGAGGTGAGTTGATCAATCATT
1 TGCTCGTAATCTGGCAACATGCCTCTCATTC-AACTCACTGTAGGAGGTGAGTTGATCAATCATT
* *
32453639 CATTCTTGAATGCTTGTAGGAATAGCCTTGGGGCCTAAAGC-AATGGGCACTC
65 CATTCTTGAATGCTTGTGGGAATAGCCTTAGGGCCT-AAGCTAATGGGCACTC
32453691 TCTGAGTCTG
Statistics
Matches: 329, Mismatches: 32, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
123 84 0.26
124 240 0.73
125 5 0.02
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (124 bp):
TGCTCGTAATCTGGCAACATGCCTCTCATTCAACTCACTGTAGGAGGTGAGTTGATCAATCATTC
ATTCTTGAATGCTTGTGGGAATAGCCTTAGGGCCTAAGCTAATGGGCACTCCTTGAGAT
Found at i:32458088 original size:29 final size:30
Alignment explanation
Indices: 32458046--32458130 Score: 93
Period size: 29 Copynumber: 2.9 Consensus size: 30
32458036 TTGATAATTA
*
32458046 TAAT-ACCAGCACAAAGTGCCTGATAACCG
1 TAATCACCGGCACAAAGTGCCTGATAACCG
* * * *
32458075 TAA-CACCGGTACAAAGTACCTAATAACTG
1 TAATCACCGGCACAAAGTGCCTGATAACCG
* *
32458104 TAATCACTGGCACATAGTGCCTGATAA
1 TAATCACCGGCACAAAGTGCCTGATAA
32458131 ACCCTAATGA
Statistics
Matches: 44, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
29 26 0.59
30 18 0.41
ACGTcount: A:0.38, C:0.25, G:0.16, T:0.21
Consensus pattern (30 bp):
TAATCACCGGCACAAAGTGCCTGATAACCG
Found at i:32464281 original size:28 final size:28
Alignment explanation
Indices: 32464241--32464325 Score: 161
Period size: 28 Copynumber: 3.0 Consensus size: 28
32464231 GGCAAAAAGT
32464241 TGTCACTTCCTAATTAACACACGTTCTA
1 TGTCACTTCCTAATTAACACACGTTCTA
32464269 TGTCACTTCCTAATTAACACACGTTCTA
1 TGTCACTTCCTAATTAACACACGTTCTA
*
32464297 TGTCACTTCCTAATTAACACACGCTCTA
1 TGTCACTTCCTAATTAACACACGTTCTA
32464325 T
1 T
32464326 CTAAATATGG
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 56 1.00
ACGTcount: A:0.28, C:0.29, G:0.07, T:0.35
Consensus pattern (28 bp):
TGTCACTTCCTAATTAACACACGTTCTA
Found at i:32467621 original size:18 final size:18
Alignment explanation
Indices: 32467577--32467621 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
32467567 ACAATAAGAA
32467577 AACGTTTTGAAATTGAAT
1 AACGTTTTGAAATTGAAT
*
32467595 AACGATTTGTAAA-TGAAT
1 AACGTTTTG-AAATTGAAT
*
32467613 AAGGTTTTG
1 AACGTTTTG
32467622 GAAACGAACG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 20 0.87
19 3 0.13
ACGTcount: A:0.38, C:0.04, G:0.20, T:0.38
Consensus pattern (18 bp):
AACGTTTTGAAATTGAAT
Found at i:32469993 original size:2 final size:2
Alignment explanation
Indices: 32469986--32470021 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
32469976 TAAAGAGTTG
32469986 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32470022 AGAAGAGGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:32485731 original size:27 final size:27
Alignment explanation
Indices: 32485698--32485817 Score: 143
Period size: 27 Copynumber: 4.5 Consensus size: 27
32485688 GAGACCCTAA
32485698 AATAGGGTAAAATAACCAAAATACCCC
1 AATAGGGTAAAATAACCAAAATACCCC
*
32485725 AATAGGGTAAAATAACCAAATTACCCC
1 AATAGGGTAAAATAACCAAAATACCCC
* * * **
32485752 TATAGGGTAGAATGACTGAAATACCCC
1 AATAGGGTAAAATAACCAAAATACCCC
* * * *
32485779 CATAGGGTAAAATGATCGAAATACCCC
1 AATAGGGTAAAATAACCAAAATACCCC
32485806 -ATAGGGTAAAAT
1 AATAGGGTAAAAT
32485818 GACTGTTATA
Statistics
Matches: 82, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 12 0.15
27 70 0.85
ACGTcount: A:0.45, C:0.19, G:0.17, T:0.19
Consensus pattern (27 bp):
AATAGGGTAAAATAACCAAAATACCCC
Done.