Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63323194
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1953226 characters in sequence are not A, C, G, or T
File 95 of 199
Found at i:32485777 original size:54 final size:53
Alignment explanation
Indices: 32485699--32485822 Score: 160
Period size: 54 Copynumber: 2.3 Consensus size: 53
32485689 AGACCCTAAA
* **
32485699 ATAGGGTAAAATAACCAAAATACCCCAATAGGGTAAAAT-AACCAAATTACCCC
1 ATAGGGTAAAATGACTGAAATACCCCAATAGGGTAAAATGAACCAAA-TACCCC
* * * *
32485752 TATAGGGTAGAATGACTGAAATACCCCCATAGGGTAAAATGATCGAAATACCCC
1 -ATAGGGTAAAATGACTGAAATACCCCAATAGGGTAAAATGAACCAAATACCCC
32485806 ATAGGGTAAAATGACTG
1 ATAGGGTAAAATGACTG
32485823 TTATAACCTT
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
53 16 0.26
54 40 0.66
55 5 0.08
ACGTcount: A:0.44, C:0.19, G:0.18, T:0.19
Consensus pattern (53 bp):
ATAGGGTAAAATGACTGAAATACCCCAATAGGGTAAAATGAACCAAATACCCC
Found at i:32496183 original size:41 final size:41
Alignment explanation
Indices: 32496126--32496351 Score: 312
Period size: 41 Copynumber: 5.5 Consensus size: 41
32496116 GACTTTTCGG
32496126 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
*
32496167 GGGCTTTCGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
* *
32496208 GGGATTTAGCGGCATTTTTATGTAAGCGCCGCTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
* * * *
32496249 GGGATTTAGTGGCGTTTTTAAGTAAGCGCCGTTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
* *
32496290 GGGCTTTAGCGGCGTTTTTAT-TGATGCGCCGCTAAT-TCTCA
1 GGGCTTTAGCGGCGTTTTTATGT-AAGCGCCGCTAATGT-TCT
* *
32496331 GGCCTTTAGTGGCGCTTTTTA
1 GGGCTTTAGCGGCG-TTTTTA
32496352 AAAAAACGCC
Statistics
Matches: 166, Mismatches: 16, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
40 2 0.01
41 158 0.95
42 6 0.04
ACGTcount: A:0.15, C:0.19, G:0.28, T:0.38
Consensus pattern (41 bp):
GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
Found at i:32496267 original size:82 final size:82
Alignment explanation
Indices: 32496130--32496391 Score: 314
Period size: 82 Copynumber: 3.2 Consensus size: 82
32496120 TTTCGGGGGC
* * * *
32496130 TTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCTGGGCTTTCGCGGCGTTTTTATGTAAGCG
1 TTTAGCGGCATTTTTATGTAAGCGCCGCTAATGTTCTGGGCTTTAGTGGCGTTTTTAAGTAAGCG
32496195 CCGCTAATGTTCTGGGA
66 CCGCTAATGTTCTGGGA
*
32496212 TTTAGCGGCATTTTTATGTAAGCGCCGCTAATGTTCTGGGATTTAGTGGCGTTTTTAAGTAAGCG
1 TTTAGCGGCATTTTTATGTAAGCGCCGCTAATGTTCTGGGCTTTAGTGGCGTTTTTAAGTAAGCG
* *
32496277 CCGTTAATGTTCTGGGC
66 CCGCTAATGTTCTGGGA
* * * * **
32496294 TTTAGCGGCGTTTTTAT-TGATGCGCCGCTAAT-TCTCAGGCCTTTAGTGGCGCTTTTTAAAAAA
1 TTTAGCGGCATTTTTATGT-AAGCGCCGCTAATGT-TCTGGGCTTTAGTGGCG-TTTTTAAGTAA
* * **
32496357 ACGCCGCTAATGCTCT-TCA
63 GCGCCGCTAATGTTCTGGGA
*
32496376 TTTAGTGGCATTTTTA
1 TTTAGCGGCATTTTTA
32496392 GAAAGCACCG
Statistics
Matches: 155, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
81 2 0.01
82 131 0.85
83 22 0.14
ACGTcount: A:0.18, C:0.19, G:0.26, T:0.38
Consensus pattern (82 bp):
TTTAGCGGCATTTTTATGTAAGCGCCGCTAATGTTCTGGGCTTTAGTGGCGTTTTTAAGTAAGCG
CCGCTAATGTTCTGGGA
Found at i:32496379 original size:123 final size:123
Alignment explanation
Indices: 32496130--32496391 Score: 314
Period size: 123 Copynumber: 2.1 Consensus size: 123
32496120 TTTCGGGGGC
* * *
32496130 TTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCTGGGCTTTCGCGGCGTTTTTATGTAAGCG
1 TTTAGTGGCGTTTTTAAGTAAGCGCCGCTAATGTTCTGGGCTTTAGCGGCGTTTTTATGTAAGCG
* * *** * * *
32496195 CCGCTAATGTTCTGGGATTTAGCGGCATTTTTATGTAAGCGCCGCTAATGTTCTGGGA
66 CCGCTAATGTTCAGGCATTTAGCGGCATTTTTAAAAAAACGCCGCTAATGCTCTGGCA
* *
32496253 TTTAGTGGCGTTTTTAAGTAAGCGCCGTTAATGTTCTGGGCTTTAGCGGCGTTTTTAT-TGATGC
1 TTTAGTGGCGTTTTTAAGTAAGCGCCGCTAATGTTCTGGGCTTTAGCGGCGTTTTTATGT-AAGC
* * * *
32496317 GCCGCTAAT-TCTCAGGCCTTTAGTGGCGCTTTTTAAAAAAACGCCGCTAATGCTCT-TCA
65 GCCGCTAATGT-TCAGGCATTTAGCGGC-ATTTTTAAAAAAACGCCGCTAATGCTCTGGCA
*
32496376 TTTAGTGGCATTTTTA
1 TTTAGTGGCGTTTTTA
32496392 GAAAGCACCG
Statistics
Matches: 118, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
122 2 0.02
123 94 0.80
124 22 0.19
ACGTcount: A:0.18, C:0.19, G:0.26, T:0.38
Consensus pattern (123 bp):
TTTAGTGGCGTTTTTAAGTAAGCGCCGCTAATGTTCTGGGCTTTAGCGGCGTTTTTATGTAAGCG
CCGCTAATGTTCAGGCATTTAGCGGCATTTTTAAAAAAACGCCGCTAATGCTCTGGCA
Found at i:32498010 original size:66 final size:66
Alignment explanation
Indices: 32497927--32498062 Score: 218
Period size: 66 Copynumber: 2.1 Consensus size: 66
32497917 GACCACAGTT
* *
32497927 GAGGTTCAAAAGAAATATGAAAAACTCCAACTACAACTTAAAGCAGATGCGGCAGCGAGAGAAGC
1 GAGGTTCAAAAGAAATATGAAAAACTCCAACGACAACTTAAAGCAGATGCGGCAGCCAGAGAAGC
32497992 A
66 A
* * * *
32497993 GAGGTTCAAAAGAAATATGAAGAACTCCAGCGACAACTTAAAGCTGATGCGGCATCCAGAGAAGC
1 GAGGTTCAAAAGAAATATGAAAAACTCCAACGACAACTTAAAGCAGATGCGGCAGCCAGAGAAGC
32498058 A
66 A
32498059 GAGG
1 GAGG
32498063 CTGTAGCGAG
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.43, C:0.18, G:0.25, T:0.14
Consensus pattern (66 bp):
GAGGTTCAAAAGAAATATGAAAAACTCCAACGACAACTTAAAGCAGATGCGGCAGCCAGAGAAGC
A
Found at i:32498474 original size:43 final size:43
Alignment explanation
Indices: 32498414--32498544 Score: 192
Period size: 43 Copynumber: 3.0 Consensus size: 43
32498404 CAAATAGTGA
*
32498414 CGTTTGTGTAAAAAGCGCCGCTAAAGAACATTAGCTTTAGCGG
1 CGTTTGTGTAAAAAGCGCCGCTAAAGAACATTAACTTTAGCGG
* * * *
32498457 CGTTTGTGTTAGAAGCGCCGCTAAAGAACATGAATTTTAGCGG
1 CGTTTGTGTAAAAAGCGCCGCTAAAGAACATTAACTTTAGCGG
*
32498500 CGTTTGTGTAAAAAGCGCCGCTAAAGAACATGT-TCTTTAGCGG
1 CGTTTGTGTAAAAAGCGCCGCTAAAGAACAT-TAACTTTAGCGG
32498543 CG
1 CG
32498545 CTTTTAAAAA
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
43 77 1.00
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (43 bp):
CGTTTGTGTAAAAAGCGCCGCTAAAGAACATTAACTTTAGCGG
Found at i:32510540 original size:126 final size:125
Alignment explanation
Indices: 32510220--32510573 Score: 570
Period size: 125 Copynumber: 2.8 Consensus size: 125
32510210 ATTATTTCAA
32510220 GTTGACGTTTCTG-GTCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTG
1 GTTGACGTTTCTGAG-CAAATAGTATAAAATCGCTTCTA-CAGGATGCTATTTGAGAAGAAATTG
32510284 TGAAATC-ATGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTT
64 TGAAATCGA-GCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTT
* * * * *
32510346 -CTGATGTTTCTAAGCAAATAGTATAAAATCGTTTCTACGAGAATGCTATTTGAGAAGAAATTGT
1 GTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAC-AGGATGCTATTTGAGAAGAAATTGT
*
32510410 GAAATCGAACCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTT
65 GAAATCGAGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTT
32510471 GTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTATCAGGATGCTATTTGAGAAGAAATTGT
1 GTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTA-CAGGATGCTATTTGAGAAGAAATTGT
* *
32510536 GAAATTGCGCCCTCGTGGACGCGATTTTGCTACAGTAG
65 GAAATCGAGCCCTCGTGGACGCGATTTTGCTACAGTAG
32510574 CAAGTTTGGG
Statistics
Matches: 209, Mismatches: 14, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
124 1 0.00
125 113 0.54
126 94 0.45
127 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (125 bp):
GTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACAGGATGCTATTTGAGAAGAAATTGTG
AAATCGAGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTT
Found at i:32513648 original size:10 final size:10
Alignment explanation
Indices: 32513633--32513657 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
32513623 CAAATCTAAC
32513633 ATTATGTAAA
1 ATTATGTAAA
32513643 ATTATGTAAA
1 ATTATGTAAA
32513653 ATTAT
1 ATTAT
32513658 TAAGCCAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (10 bp):
ATTATGTAAA
Found at i:32513739 original size:56 final size:55
Alignment explanation
Indices: 32513649--32513977 Score: 486
Period size: 56 Copynumber: 5.9 Consensus size: 55
32513639 TAAAATTATG
32513649 TAAAATTATTAAGCCAAAAAAATTGTGTTAATGGTTAGTAAAATTTATCAAATAAAC
1 TAAAATTATTAAGCC--AAAAATTGTGTTAATGGTTAGTAAAATTTATCAAATAAAC
**
32513706 TAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAA-TTATCAAA-ATATG
1 TAAAATTATTAAG-CCAAAAATTGTGTTAATGGTTAGTAAAATTTATCAAATA-AAC
* *
32513761 TAAAATTATTAAGCCAAAAATTGTATTAATGGTTAGTAAAATTTATGAAATAAAC
1 TAAAATTATTAAGCCAAAAATTGTGTTAATGGTTAGTAAAATTTATCAAATAAAC
* **
32513816 TAAAATTATTAAGTCCAGAAATTGTGTTAATGGTTAGTAAAA-TTATCAAA-ATATG
1 TAAAATTATTAAG-CCAAAAATTGTGTTAATGGTTAGTAAAATTTATCAAATA-AAC
* *
32513871 TAAAATTATTAAGCCAAAAATTGTATTAATGGTTAGTAAAATTTATGAAATAAAC
1 TAAAATTATTAAGCCAAAAATTGTGTTAATGGTTAGTAAAATTTATCAAATAAAC
32513926 TAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTTATCAAAT
1 TAAAATTATTAAG-CCAAAAATTGTGTTAATGGTTAGTAAAATTTATCAAAT
32513978 TAAGTTAGGT
Statistics
Matches: 245, Mismatches: 18, Indels: 19
0.87 0.06 0.07
Matches are distributed among these distances:
54 55 0.22
55 85 0.35
56 90 0.37
57 13 0.05
58 2 0.01
ACGTcount: A:0.47, C:0.06, G:0.12, T:0.36
Consensus pattern (55 bp):
TAAAATTATTAAGCCAAAAATTGTGTTAATGGTTAGTAAAATTTATCAAATAAAC
Found at i:32513804 original size:110 final size:110
Alignment explanation
Indices: 32513640--32513976 Score: 611
Period size: 110 Copynumber: 3.0 Consensus size: 110
32513630 AACATTATGT
* *
32513640 AAAATTATGTAAAATTATTAAGCCAAAAAAATTGTGTTAATGGTTAGTAAAATTTATCAAATAAA
1 AAAA-TATGTAAAATTATTAAGCC--AAAAATTGTATTAATGGTTAGTAAAATTTATGAAATAAA
32513705 CTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTATC
63 CTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTATC
32513753 AAAATATGTAAAATTATTAAGCCAAAAATTGTATTAATGGTTAGTAAAATTTATGAAATAAACTA
1 AAAATATGTAAAATTATTAAGCCAAAAATTGTATTAATGGTTAGTAAAATTTATGAAATAAACTA
*
32513818 AAATTATTAAGTCCAGAAATTGTGTTAATGGTTAGTAAAATTATC
66 AAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTATC
32513863 AAAATATGTAAAATTATTAAGCCAAAAATTGTATTAATGGTTAGTAAAATTTATGAAATAAACTA
1 AAAATATGTAAAATTATTAAGCCAAAAATTGTATTAATGGTTAGTAAAATTTATGAAATAAACTA
32513928 AAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTTATC
66 AAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAA-TTATC
32513974 AAA
1 AAA
32513977 TTAAGTTAGG
Statistics
Matches: 219, Mismatches: 4, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
110 188 0.86
111 8 0.04
112 19 0.09
113 4 0.02
ACGTcount: A:0.47, C:0.06, G:0.12, T:0.35
Consensus pattern (110 bp):
AAAATATGTAAAATTATTAAGCCAAAAATTGTATTAATGGTTAGTAAAATTTATGAAATAAACTA
AAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTATC
Found at i:32514014 original size:29 final size:29
Alignment explanation
Indices: 32513975--32514294 Score: 453
Period size: 29 Copynumber: 10.9 Consensus size: 29
32513965 AAATTTATCA
32513975 AATTAAGTTAGGTTAGGGTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTAGGGTTTTT
* *
32514004 AGTTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTAGGGTTTTT
* *
32514033 AATTAATTTAGGTTAGGGATAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTAGGGTTTTT
* * *
32514062 AGTTAATTTAGGTTAGGGTTAGAGTTTTT
1 AATTAAGTTAGGTTAGGGTTAGGGTTTTT
* *
32514091 ATTTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTAGGGTTTTT
32514120 AATTAAGTTAGGTTAGGGTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTAGGGTTTTT
*
32514149 AGTTAGGTTAGGTTAGGTTAGGGTTAGGGTTTTT
1 A---A--TTAAGTTAGGTTAGGGTTAGGGTTTTT
*
32514183 AATTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTAGGGTTTTT
* *
32514212 AGTTAGGTTAGGTTAGGGTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTAGGGTTTTT
*
32514241 AATTAAGTTAGGTGAGGGTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTAGGGTTTTT
*
32514270 -ATTAAGTTAGGTGAGGGTTAGGGTT
1 AATTAAGTTAGGTTAGGGTTAGGGTT
32514295 AGGGTTTTTA
Statistics
Matches: 266, Mismatches: 20, Indels: 11
0.90 0.07 0.04
Matches are distributed among these distances:
28 25 0.09
29 212 0.80
31 1 0.00
32 1 0.00
34 27 0.10
ACGTcount: A:0.23, C:0.00, G:0.32, T:0.45
Consensus pattern (29 bp):
AATTAAGTTAGGTTAGGGTTAGGGTTTTT
Found at i:32514165 original size:10 final size:11
Alignment explanation
Indices: 32514126--32514176 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
32514116 TTTTAATTAA
32514126 GTTAGGTTAGG
1 GTTAGGTTAGG
***
32514137 GTTAGGGTTTTTA
1 GTTA-GG-TTAGG
32514150 GTTAGGTTA-G
1 GTTAGGTTAGG
32514160 GTTAGGTTAGG
1 GTTAGGTTAGG
32514171 GTTAGG
1 GTTAGG
32514177 GTTTTTAATT
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
10 9 0.28
11 13 0.41
12 4 0.12
13 6 0.19
ACGTcount: A:0.18, C:0.00, G:0.41, T:0.41
Consensus pattern (11 bp):
GTTAGGTTAGG
Found at i:32514189 original size:121 final size:119
Alignment explanation
Indices: 32513977--32514309 Score: 501
Period size: 121 Copynumber: 2.8 Consensus size: 119
32513967 ATTTATCAAA
* * *
32513977 TTAAGTTAGGTTAGGGTTAGGGTTTTTAGTTAATTTAGGTTAGGGTTAGGGTTTTTA--A-TTAA
1 TTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTTATTAGTTAG
* * * *
32514039 TTTAGGTTAGGGATAGGGTTTTTAGTTAATTTAGGTTAGGGTTAGAGTTTTTAT
66 GTTAGGTTAGGGTTAGGGTTTTTAATTAATTTAGGTTAGGGTTAGAGTTTTTAG
*
32514093 TTAATTTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTTAGTTAGGTT
1 TTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTTA-TTA-GTT
*
32514158 AGGTTAGGTTAGGGTTAGGGTTTTTAATTAATTTAGGTTAGGGTTAGGGTTTTTAG
64 AGGTTAGGTTAGGGTTAGGGTTTTTAATTAATTTAGGTTAGGGTTAGAGTTTTTAG
* *
32514214 TTAGGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTGAGGGTTAGGGTTTTTATTAAGTTA
1 TTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTTATT-AGTTA
*
32514279 GGTGAGGGTTAGGGTTAGGGTTTTTAATTAA
65 GGTTA-GGTTAGGGTTAGGGTTTTTAATTAA
32514310 AATAGTTTAG
Statistics
Matches: 197, Mismatches: 13, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
116 54 0.27
119 1 0.01
120 10 0.05
121 132 0.67
ACGTcount: A:0.23, C:0.00, G:0.32, T:0.46
Consensus pattern (119 bp):
TTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTTATTAGTTAG
GTTAGGTTAGGGTTAGGGTTTTTAATTAATTTAGGTTAGGGTTAGAGTTTTTAG
Found at i:32514338 original size:46 final size:45
Alignment explanation
Indices: 32514274--32514399 Score: 175
Period size: 46 Copynumber: 2.8 Consensus size: 45
32514264 GTTTTTATTA
* *
32514274 AGTTAGGTGAGGGTTAGGGTTAGGGTTTTTAATTAAAATAGTTTAG
1 AGTTAGGTTA-GGTTAGGGTTAGGGTTTTTAATTAAAATAGGTTAG
**
32514320 TAGTTAGGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAG
1 -AGTTAGGTTAGGTTAGGGTTAGGGTTTTTAATTAAAATAGGTTAG
*
32514366 -GTTAGGTTAGGTTA-GGTTAGGGTTTTCAATTAAA
1 AGTTAGGTTAGGTTAGGGTTAGGGTTTTTAATTAAA
32514400 TTAGAGTTTT
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
43 18 0.25
44 14 0.19
46 32 0.44
47 9 0.12
ACGTcount: A:0.26, C:0.01, G:0.32, T:0.41
Consensus pattern (45 bp):
AGTTAGGTTAGGTTAGGGTTAGGGTTTTTAATTAAAATAGGTTAG
Found at i:32514342 original size:6 final size:5
Alignment explanation
Indices: 32514322--32514386 Score: 64
Period size: 5 Copynumber: 13.2 Consensus size: 5
32514312 TAGTTTAGTA
* * *
32514322 GTTAG GTTAG GTTAGG GTTAGG GTT-- TTTA- ATTAA GTTAG GTTAG GTTAG
1 GTTAG GTTAG GTTA-G GTTA-G GTTAG GTTAG GTTAG GTTAG GTTAG GTTAG
32514371 GTTAG GTTAG GTTAG G
1 GTTAG GTTAG GTTAG G
32514387 GTTTTCAATT
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
3 2 0.04
4 3 0.06
5 38 0.72
6 10 0.19
ACGTcount: A:0.22, C:0.00, G:0.37, T:0.42
Consensus pattern (5 bp):
GTTAG
Found at i:32514495 original size:25 final size:26
Alignment explanation
Indices: 32514452--32514500 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
32514442 CTTCAAAAAT
* *
32514452 TTCTATGTGTATTATATCAGATAAAC
1 TTCTATGTGTATTACATCAAATAAAC
*
32514478 TTCTAT-TTTATTACATCAAATAA
1 TTCTATGTGTATTACATCAAATAA
32514501 TAAATTTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 14 0.70
26 6 0.30
ACGTcount: A:0.37, C:0.12, G:0.06, T:0.45
Consensus pattern (26 bp):
TTCTATGTGTATTACATCAAATAAAC
Found at i:32514623 original size:21 final size:21
Alignment explanation
Indices: 32514598--32514638 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
32514588 TCCTCTAGCT
*
32514598 TCCGGCGGCGATTGTTCTTCC
1 TCCGGCGGCGATTGTGCTTCC
* *
32514619 TCCGGTGGTGATTGTGCTTC
1 TCCGGCGGCGATTGTGCTTC
32514639 TTTCGGTTCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.05, C:0.27, G:0.32, T:0.37
Consensus pattern (21 bp):
TCCGGCGGCGATTGTGCTTCC
Found at i:32515596 original size:7 final size:7
Alignment explanation
Indices: 32515584--32515608 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
32515574 TTATATAATT
32515584 AATACTA
1 AATACTA
32515591 AATACTA
1 AATACTA
32515598 AATACTA
1 AATACTA
32515605 AATA
1 AATA
32515609 TCAATCGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:32516242 original size:17 final size:17
Alignment explanation
Indices: 32516220--32516257 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
32516210 ATTGCTAGAT
*
32516220 TGGGCAGACCTAGTGAC
1 TGGGCAGACCCAGTGAC
*
32516237 TGGGCAGACCCGGTGAC
1 TGGGCAGACCCAGTGAC
32516254 TGGG
1 TGGG
32516258 TGCCCATCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.18, C:0.24, G:0.42, T:0.16
Consensus pattern (17 bp):
TGGGCAGACCCAGTGAC
Found at i:32519158 original size:11 final size:11
Alignment explanation
Indices: 32519142--32519177 Score: 54
Period size: 11 Copynumber: 3.1 Consensus size: 11
32519132 TGGTTGTTAG
32519142 AATATTTTATT
1 AATATTTTATT
32519153 AATATTTTATCAT
1 AATATTTTAT--T
32519166 AATATTTTATT
1 AATATTTTATT
32519177 A
1 A
32519178 TAAGAAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 12 0.52
13 11 0.48
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (11 bp):
AATATTTTATT
Found at i:32519170 original size:13 final size:12
Alignment explanation
Indices: 32519142--32519180 Score: 53
Period size: 13 Copynumber: 3.2 Consensus size: 12
32519132 TGGTTGTTAG
32519142 AATATTTTAT-T
1 AATATTTTATAT
32519153 AATATTTTATCAT
1 AATATTTTAT-AT
32519166 AATATTTTATTAT
1 AATATTTTA-TAT
32519179 AA
1 AA
32519181 GAAATTTGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 10 0.40
13 14 0.56
14 1 0.04
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (12 bp):
AATATTTTATAT
Found at i:32529424 original size:14 final size:14
Alignment explanation
Indices: 32529389--32529424 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
32529379 TACATGTTAT
*
32529389 AATTTTTTTATAAA
1 AATTTATTTATAAA
32529403 ATATTTATTTATAAA
1 A-ATTTATTTATAAA
32529418 AATTTAT
1 AATTTAT
32529425 GGTCAAGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
AATTTATTTATAAA
Found at i:32530593 original size:13 final size:13
Alignment explanation
Indices: 32530575--32530605 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
32530565 AGATATGATG
32530575 ATTTGATTTTAAT
1 ATTTGATTTTAAT
32530588 ATTTGATTTTAAT
1 ATTTGATTTTAAT
*
32530601 TTTTG
1 ATTTG
32530606 TTACTTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.10, T:0.65
Consensus pattern (13 bp):
ATTTGATTTTAAT
Found at i:32532253 original size:2 final size:2
Alignment explanation
Indices: 32532246--32532412 Score: 214
Period size: 2 Copynumber: 85.0 Consensus size: 2
32532236 TGTATAGGGG
*
32532246 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GG
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * * *
32532288 GA GA GA G- GA GG GA GG GA GA GG GA GA GG GA GA GG GA GG GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* *
32532329 GA GA GA GA GA GA GA GA G- GA GA GA GG GA GA GG GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* *
32532370 GA G- GA GA GA GG GA GA GG GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
32532411 GA
1 GA
32532413 CTAGTAGATA
Statistics
Matches: 140, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
1 3 0.02
2 137 0.98
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (2 bp):
GA
Found at i:32538811 original size:27 final size:27
Alignment explanation
Indices: 32538787--32538957 Score: 227
Period size: 27 Copynumber: 6.3 Consensus size: 27
32538777 ATGTGTATAA
*
32538787 CAGTCATTTTACCCTATGGGGGTATTT
1 CAGTCATTCTACCCTATGGGGGTATTT
* * *
32538814 CAATCATTCTACCTTATGGGGATATTT
1 CAGTCATTCTACCCTATGGGGGTATTT
* * *
32538841 CGGTCATTTTACCATATGGAGGGTATTT
1 CAGTCATTCTACCCTATGG-GGGTATTT
32538869 CAGTCATTCTACCCTATGGGGGTATTT
1 CAGTCATTCTACCCTATGGGGGTATTT
**
32538896 TGGTCATTCTACCCTATGGGGGTATTT
1 CAGTCATTCTACCCTATGGGGGTATTT
32538923 C-GATCATTCTACCCTATGGGGGTATTT
1 CAG-TCATTCTACCCTATGGGGGTATTT
*
32538950 CAATCATT
1 CAGTCATT
32538958 TTATTGACCT
Statistics
Matches: 125, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
26 1 0.01
27 101 0.81
28 23 0.18
ACGTcount: A:0.20, C:0.19, G:0.21, T:0.39
Consensus pattern (27 bp):
CAGTCATTCTACCCTATGGGGGTATTT
Found at i:32538853 original size:54 final size:54
Alignment explanation
Indices: 32538789--32538960 Score: 254
Period size: 54 Copynumber: 3.2 Consensus size: 54
32538779 GTGTATAACA
* *
32538789 GTCATTTTACCCTATGGGGGTATTTCAATCATTCTACCTTATGGGGATATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCAATCATTCTACCCTATGGGGGTATTTCG
* * *
32538843 GTCATTTTACCATATGGAGGGTATTTCAGTCATTCTACCCTATGGGGGTATTTTG
1 GTCATTTTACCCTATGG-GGGTATTTCAATCATTCTACCCTATGGGGGTATTTCG
* * *
32538898 GTCATTCTACCCTATGGGGGTATTTCGATCATTCTACCCTATGGGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCAATCATTCTACCCTATGGGGGTATTTCG
*
32538952 ATCATTTTA
1 GTCATTTTA
32538961 TTGACCTCTC
Statistics
Matches: 104, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
54 56 0.54
55 48 0.46
ACGTcount: A:0.20, C:0.19, G:0.21, T:0.40
Consensus pattern (54 bp):
GTCATTTTACCCTATGGGGGTATTTCAATCATTCTACCCTATGGGGGTATTTCG
Found at i:32538924 original size:82 final size:81
Alignment explanation
Indices: 32538787--32538957 Score: 243
Period size: 82 Copynumber: 2.1 Consensus size: 81
32538777 ATGTGTATAA
* * * *
32538787 CAGTCATTTTACCCTATGGGGGTATTTCAATCATTCTACCTTATGGGGATATTTCGGTCATTTTA
1 CAGTCATTCTACCCTATGGGGGTATTTCAATCATTCTACCCTATGGGGATATTTCGATCATTCTA
32538852 CCATATGGAGGGTATTT
66 CCATATGG-GGGTATTT
*** *
32538869 CAGTCATTCTACCCTATGGGGGTATTTTGGTCATTCTACCCTATGGGGGTATTTCGATCATTCTA
1 CAGTCATTCTACCCTATGGGGGTATTTCAATCATTCTACCCTATGGGGATATTTCGATCATTCTA
*
32538934 CCCTATGGGGGTATTT
66 CCATATGGGGGTATTT
*
32538950 CAATCATT
1 CAGTCATT
32538958 TTATTGACCT
Statistics
Matches: 79, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
81 15 0.19
82 64 0.81
ACGTcount: A:0.20, C:0.19, G:0.21, T:0.39
Consensus pattern (81 bp):
CAGTCATTCTACCCTATGGGGGTATTTCAATCATTCTACCCTATGGGGATATTTCGATCATTCTA
CCATATGGGGGTATTT
Found at i:32539648 original size:24 final size:25
Alignment explanation
Indices: 32539612--32539658 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
32539602 CCTAAATCCT
*
32539612 AATATTCTCTCCTCAGA-TCTCTCCA
1 AATATCCTCTCCTCA-ATTCTCTCCA
32539637 AATATCCT-TCCTCAATTCTCTC
1 AATATCCTCTCCTCAATTCTCTC
32539659 TATGACCAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 1 0.05
24 12 0.60
25 7 0.35
ACGTcount: A:0.23, C:0.36, G:0.02, T:0.38
Consensus pattern (25 bp):
AATATCCTCTCCTCAATTCTCTCCA
Found at i:32542561 original size:50 final size:50
Alignment explanation
Indices: 32542496--32542637 Score: 203
Period size: 50 Copynumber: 2.8 Consensus size: 50
32542486 ATTTGGGTAA
*
32542496 AGAGGTCCCATGTAAGACCATGTCTGGGAAATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATATCTGGGAAATGGCATTGGCACCGAGATG
** * * *
32542546 AGAGGTCCCCCGTAAGACCATATCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATATCTGGGAAATGGCATTGGCACCGAGATG
** *
32542596 AGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 AGAGGTCCCATGTAAGACCATATCTGGGAAATGGCATTGGCA
32542638 GTACAAAAAA
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 80 1.00
ACGTcount: A:0.28, C:0.23, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATATCTGGGAAATGGCATTGGCACCGAGATG
Found at i:32558568 original size:19 final size:21
Alignment explanation
Indices: 32558525--32558572 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
32558515 CAAAAATCTT
*
32558525 TTTATAAAAATATATACAATT
1 TTTATAAAAATATATACAATA
32558546 TTTATAAAAATATAT-CAA-A
1 TTTATAAAAATATATACAATA
32558565 TTTA-AAAA
1 TTTATAAAA
32558573 GCAAAAATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 4 0.15
19 4 0.15
20 3 0.12
21 15 0.58
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (21 bp):
TTTATAAAAATATATACAATA
Found at i:32562361 original size:25 final size:24
Alignment explanation
Indices: 32562319--32562368 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
32562309 CTCATACGAA
*
32562319 CCATAAACGGGAAGCTCAAGAGAG
1 CCATAAACCGGAAGCTCAAGAGAG
* *
32562343 CCATATAACCGGATGCTCATGAGAG
1 CCATA-AACCGGAAGCTCAAGAGAG
32562368 C
1 C
32562369 TAATTAACGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.36, C:0.24, G:0.26, T:0.14
Consensus pattern (24 bp):
CCATAAACCGGAAGCTCAAGAGAG
Found at i:32562376 original size:25 final size:25
Alignment explanation
Indices: 32562348--32562410 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
32562338 GAGAGCCATA
* *
32562348 TAACCGGATGCTCATGAGAGCTAAT
1 TAACAGGACGCTCATGAGAGCTAAT
* * *
32562373 TAACGGGACGCTCTTGTGAGCTAAT
1 TAACAGGACGCTCATGAGAGCTAAT
32562398 TAACAGGACGCTC
1 TAACAGGACGCTC
32562411 TTACATGTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (25 bp):
TAACAGGACGCTCATGAGAGCTAAT
Found at i:32562411 original size:25 final size:25
Alignment explanation
Indices: 32562365--32562412 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
32562355 ATGCTCATGA
*
32562365 GAGCTAATTAACGGGACGCTCTTGT
1 GAGCTAATTAACAGGACGCTCTTGT
32562390 GAGCTAATTAACAGGACGCTCTT
1 GAGCTAATTAACAGGACGCTCTT
32562413 ACATGTAACA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (25 bp):
GAGCTAATTAACAGGACGCTCTTGT
Found at i:32567281 original size:34 final size:34
Alignment explanation
Indices: 32567238--32567311 Score: 139
Period size: 34 Copynumber: 2.2 Consensus size: 34
32567228 ACTAAGAACG
*
32567238 AAATAAAAACGTAAGAATAATTTTTGTCTCCCTA
1 AAATAAAAACGTAAGAATAATTTTTGCCTCCCTA
32567272 AAATAAAAACGTAAGAATAATTTTTGCCTCCCTA
1 AAATAAAAACGTAAGAATAATTTTTGCCTCCCTA
32567306 AAATAA
1 AAATAA
32567312 GTGAAAACTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.47, C:0.15, G:0.08, T:0.30
Consensus pattern (34 bp):
AAATAAAAACGTAAGAATAATTTTTGCCTCCCTA
Found at i:32568424 original size:18 final size:18
Alignment explanation
Indices: 32568401--32568443 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
32568391 ACCCAATCTA
**
32568401 AACCCAAGTATTCAACCC
1 AACCCAAGTACCCAACCC
*
32568419 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
32568437 AACCCAA
1 AACCCAA
32568444 TCATAAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.42, C:0.44, G:0.02, T:0.12
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:32568564 original size:18 final size:17
Alignment explanation
Indices: 32568543--32568591 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
32568533 TCAATTCGGG
*
32568543 TAATCCGGTTAATTCGAT
1 TAATCCGGGTAATTCG-T
*
32568561 TAATTCGGGTAATTCGT
1 TAATCCGGGTAATTCGT
* *
32568578 TAATTCAGGTAATT
1 TAATCCGGGTAATT
32568592 TTTAACCAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
17 14 0.50
18 14 0.50
ACGTcount: A:0.29, C:0.12, G:0.18, T:0.41
Consensus pattern (17 bp):
TAATCCGGGTAATTCGT
Found at i:32568565 original size:27 final size:27
Alignment explanation
Indices: 32568530--32568583 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
32568520 ATTATGTAGT
32568530 GATTCAATTCGGGTAATCCGGTTAATTC
1 GATTCAATTCGGGTAATCC-GTTAATTC
*
32568558 GATT-AATTCGGGTAATTCGTTAATTC
1 GATTCAATTCGGGTAATCCGTTAATTC
32568584 AGGTAATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 8 0.32
27 13 0.52
28 4 0.16
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.39
Consensus pattern (27 bp):
GATTCAATTCGGGTAATCCGTTAATTC
Found at i:32568582 original size:17 final size:18
Alignment explanation
Indices: 32568552--32568591 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
32568542 GTAATCCGGT
*
32568552 TAATTCGATTAATTCGGG
1 TAATTCGATTAATTCAGG
32568570 TAATTCG-TTAATTCAGG
1 TAATTCGATTAATTCAGG
32568587 TAATT
1 TAATT
32568592 TTTAACCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.42
Consensus pattern (18 bp):
TAATTCGATTAATTCAGG
Found at i:32568953 original size:16 final size:16
Alignment explanation
Indices: 32568932--32568967 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
32568922 ACAAATTGAA
32568932 ATTTTA-TTTTCATTTT
1 ATTTTATTTTTCA-TTT
32568948 ATTTTATTTTTCATTT
1 ATTTTATTTTTCATTT
32568964 ATTT
1 ATTT
32568968 GAAAATCCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (16 bp):
ATTTTATTTTTCATTT
Found at i:32570810 original size:10 final size:10
Alignment explanation
Indices: 32570795--32570901 Score: 57
Period size: 10 Copynumber: 10.6 Consensus size: 10
32570785 GAAGGAGAGG
32570795 GAAAGAAGAA
1 GAAAGAAGAA
32570805 GAAAG-A-AA
1 GAAAGAAGAA
32570813 GAAAGAAAGAA
1 GAAAG-AAGAA
32570824 -AAAGAAGGAA
1 GAAAGAA-GAA
*
32570834 CGGAAAGGA-AA
1 --GAAAGAAGAA
*
32570845 G-GAGAAGAA
1 GAAAGAAGAA
*
32570854 GAAAAAAGAAA
1 GAAAGAAG-AA
32570865 GAAA-AAGAA
1 GAAAGAAGAA
32570874 GGAAAGAA-AA
1 -GAAAGAAGAA
*
32570884 GGAAAGGAGAA
1 -GAAAGAAGAA
32570895 GAGAAGA
1 GA-AAGA
32570902 GAAAAAAAAA
Statistics
Matches: 76, Mismatches: 7, Indels: 27
0.69 0.06 0.25
Matches are distributed among these distances:
8 10 0.13
9 9 0.12
10 35 0.46
11 17 0.22
13 5 0.07
ACGTcount: A:0.67, C:0.01, G:0.32, T:0.00
Consensus pattern (10 bp):
GAAAGAAGAA
Found at i:32570812 original size:4 final size:4
Alignment explanation
Indices: 32570795--32570882 Score: 57
Period size: 4 Copynumber: 23.0 Consensus size: 4
32570785 GAAGGAGAGG
* *
32570795 GAAA G-AA G-AA GAAA GAAA GAAA GAAA G-AA -AAA GAAG GAACG GAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAA-A GAAA
*
32570840 GGAAA GGAGAA G-AA GAAA -AAA GAAA G-AA -AAA GAAG GAAA GAAA
1 -GAAA -GA-AA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
32570883 AGGAAAGGAG
Statistics
Matches: 70, Mismatches: 4, Indels: 20
0.74 0.04 0.21
Matches are distributed among these distances:
3 20 0.29
4 36 0.51
5 12 0.17
6 2 0.03
ACGTcount: A:0.69, C:0.01, G:0.30, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:32570812 original size:14 final size:14
Alignment explanation
Indices: 32570795--32570881 Score: 60
Period size: 14 Copynumber: 6.5 Consensus size: 14
32570785 GAAGGAGAGG
32570795 GAAAGAAGAAGAAA
1 GAAAGAAGAAGAAA
32570809 GAAAG-A-AAGAAA
1 GAAAGAAGAAGAAA
*
32570821 GAAA-AAGAAGGAACG
1 GAAAGAAGAA-GAA-A
* *
32570836 GAAAGGA-AAG-GA
1 GAAAGAAGAAGAAA
*
32570848 G-AAGAAGAAAAAA
1 GAAAGAAGAAGAAA
* *
32570861 GAAAGAAAAAGAAG
1 GAAAGAAGAAGAAA
32570875 GAAAGAA
1 GAAAGAA
32570882 AAGGAAAGGA
Statistics
Matches: 55, Mismatches: 10, Indels: 16
0.68 0.12 0.20
Matches are distributed among these distances:
11 4 0.07
12 14 0.25
13 5 0.09
14 25 0.45
15 6 0.11
16 1 0.02
ACGTcount: A:0.69, C:0.01, G:0.30, T:0.00
Consensus pattern (14 bp):
GAAAGAAGAAGAAA
Found at i:32570870 original size:44 final size:45
Alignment explanation
Indices: 32570794--32570951 Score: 168
Period size: 44 Copynumber: 3.6 Consensus size: 45
32570784 AGAAGGAGAG
* * *
32570794 GGAAAGAAGAAGAAAGAAAGAAAGAAAGAAAAAGAAGGAACGGAAA
1 GGAAAGGAGAAG-AAGAAAGAAAGAAAGAAAAAGAAGGAAAGAAAA
32570840 GGAAAGGAGAAGAAGAAA-AAAGAAAGAAAAAGAAGGAAAGAAAA
1 GGAAAGGAGAAGAAGAAAGAAAGAAAGAAAAAGAAGGAAAGAAAA
* ***
32570884 GGAAAGGAGAAG-AGAAGAGAAA-AAAAAAACAAGAA-GAATAGGGGA
1 GGAAAGGAGAAGAAGAA-AGAAAGAAAGAAA-AAGAAGGAA-AGAAAA
32570929 GG-AAGGA-AA-AAGAAAGAAAGAAA
1 GGAAAGGAGAAGAAGAAAGAAAGAAA
32570952 AAATATTTTA
Statistics
Matches: 99, Mismatches: 7, Indels: 15
0.82 0.06 0.12
Matches are distributed among these distances:
42 5 0.05
43 13 0.13
44 51 0.52
45 19 0.19
46 11 0.11
ACGTcount: A:0.67, C:0.01, G:0.31, T:0.01
Consensus pattern (45 bp):
GGAAAGGAGAAGAAGAAAGAAAGAAAGAAAAAGAAGGAAAGAAAA
Found at i:32570882 original size:14 final size:14
Alignment explanation
Indices: 32570810--32570883 Score: 69
Period size: 14 Copynumber: 5.1 Consensus size: 14
32570800 AAGAAGAAAG
*
32570810 AAAGAAAGAAAGAA
1 AAAGAAGGAAAGAA
* *
32570824 AAAGAAGGAACGGA
1 AAAGAAGGAAAGAA
*
32570838 AAGGAAAGGAGAAGAA
1 AAAG-AAGGA-AAGAA
*
32570854 GAAA-AAAGAAAGAA
1 -AAAGAAGGAAAGAA
32570868 AAAGAAGGAAAGAA
1 AAAGAAGGAAAGAA
32570882 AA
1 AA
32570884 GGAAAGGAGA
Statistics
Matches: 47, Mismatches: 9, Indels: 8
0.73 0.14 0.12
Matches are distributed among these distances:
13 3 0.06
14 30 0.64
15 9 0.19
16 3 0.06
17 2 0.04
ACGTcount: A:0.70, C:0.01, G:0.28, T:0.00
Consensus pattern (14 bp):
AAAGAAGGAAAGAA
Found at i:32570888 original size:49 final size:48
Alignment explanation
Indices: 32570780--32570908 Score: 142
Period size: 49 Copynumber: 2.7 Consensus size: 48
32570770 TGGGTGGGGG
* *
32570780 GAAGAGAAGGAGAGG-GAA-AGAAGAAGAAAGAAAGAAAGAAAGAAAAA
1 GAAGAAAAGGAAAGGAGAAGAGAAGAAGAAA-AAAGAAAGAAAGAAAAA
* * *
32570827 GAAGGAACGGAAAGGA-AAGGAGAAGAAGAAAAAAGAAAGAAA-AAGAAG
1 GAAGAAAAGGAAAGGAGAA-GAGAAGAAGAAAAAAGAAAGAAAGAA-AAA
32570875 GAAAGAAAAGGAAAGGAGAAGAGAAG-AGAAAAAA
1 G-AAGAAAAGGAAAGGAGAAGAGAAGAAGAAAAAA
32570909 AAAACAAGAA
Statistics
Matches: 69, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
47 15 0.22
48 22 0.32
49 30 0.43
50 2 0.03
ACGTcount: A:0.66, C:0.01, G:0.33, T:0.00
Consensus pattern (48 bp):
GAAGAAAAGGAAAGGAGAAGAGAAGAAGAAAAAAGAAAGAAAGAAAAA
Found at i:32572083 original size:285 final size:284
Alignment explanation
Indices: 32571336--32572833 Score: 2241
Period size: 285 Copynumber: 5.3 Consensus size: 284
32571326 AAAGTAAAAA
32571336 TATAAAATTAGAAATTATGAAATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAAGAAAT
1 TATAAAATTAGAAATTATGAAATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAAGAAAT
* * ** *
32571401 GGCCAAGGTAAGAGTGTTTTATAATTTTTTTTTAAAATTCAGAAATAATTAATAAAAATATTTGA
66 GG-CGAGGTAAGAGTGTTTTACAAAATTTTTTAAAAATTCAGAAATAATTAATAAAAATATTTGA
32571466 AACAAAATGTACTAAAATAATATAAAATAATAAAATACGAAAATAAAATTATTTTATTGAAAGTA
130 AACAAAATGTACTAAAATAATATAAAATAATAAAATACGAAAATAAAATTATTTTATTGAAAGTA
32571531 ATAAAATTCGGGAAAATAATACGAGCAAATGGCGGGAATAAGGGGTTTTTTTACACTAAATTAAT
195 ATAAAATTCGGGAAAATAATACGAGCAAATGGCGGGAATAA-GGGTTTTTTTACACTAAATTAA-
*
32571596 TTTAAAAACACACTAAATTAATAAATT
258 TTAAAAAACACACTAAATTAATAAATT
32571623 TATAAAATTAGAAATTATGAAATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAAGAAAT
1 TATAAAATTAGAAATTATGAAATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAAGAAAT
* *
32571688 GGCTGAGGTAAGAGTGTTTTACAAAA-TATTTAAAAATTCAGAAATAATTAATATAAATATTTGA
66 GGC-GAGGTAAGAGTGTTTTACAAAATTTTTTAAAAATTCAGAAATAATTAATAAAAATATTTGA
*
32571752 AACAAAATGTACTGAAATAATATAAAATAATAAAATACGAAAATAAAATTATTTTATTGAAAGTA
130 AACAAAATGTACTAAAATAATATAAAATAATAAAATACGAAAATAAAATTATTTTATTGAAAGTA
*
32571817 ATAAAATTCGGGAAAATAATACGAGCAAATGGCGGGAACAAGGGTTTTTTTACACTAAATTAATT
195 ATAAAATTCGGGAAAATAATACGAGCAAATGGCGGGAATAAGGGTTTTTTTACACTAAATTAATT
32571882 AAAAAACACACTAAATTAATAAATT
260 AAAAAACACACTAAATTAATAAATT
* * *
32571907 TATAAAATTAGAAATTATGAAATTTTTTAAAGTAATAAAGTACGGACAAAAAAATACGAAGAAAT
1 TATAAAATTAGAAATTATGAAATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAAGAAAT
* *
32571972 GGTCGAGGTAAGAGTGTTTTACAAAATTTTTTAAAAATTCAGAAATAATTAATACAAATATGTGA
66 GG-CGAGGTAAGAGTGTTTTACAAAATTTTTTAAAAATTCAGAAATAATTAATAAAAATATTTGA
32572037 AACAAAATGTACTAAAATAATATAAAATAATAAAATACGAAAATAAAATTATTTTATTGAAAGTA
130 AACAAAATGTACTAAAATAATATAAAATAATAAAATACGAAAATAAAATTATTTTATTGAAAGTA
* *
32572102 ATAAAATTCGGGAAAATAATATGAGCAAATGGCGGGAATAA-GG----ATT----T---TT--TT
195 ATAAAATTCGGGAAAATAATACGAGCAAATGGCGGGAATAAGGGTTTTTTTACACTAAATTAATT
32572153 -------ACACTAAATTAATAAATT
260 AAAAAACACACTAAATTAATAAATT
* *** ** *
32572171 TATAAAATTAGAAATTATGAAATTTTTTAAAGTAATAA-AATGCG-GAGA-AAAAATACGAAGAA
1 TATAAAATTAGAAATTATGAAATTTTTT-AA--AGTAATAAAATGCG-GAGAAAAA-AATACGAA
* * * *
32572233 -AT--GGCTAAGGTAAGAGTGTTTTACAAATTTTTTTAAAAATTCAGAAATAATTAATATAAATA
61 GAAATGGC-GAGGTAAGAGTGTTTTACAAAATTTTTTAAAAATTCAGAAATAATTAATAAAAATA
*
32572295 TTTGAAACAAAATGTAC-AGAAATAATATAAAATAATAAAATGC-AAAA-AAAATTATTTTATTG
125 TTTGAAACAAAATGTACTA-AAATAATATAAAATAATAAAATACGAAAATAAAATTATTTTATTG
32572357 AAAGTAATAAAATTCGGGAAAATAATACGAGCAAATGGCGGGAATAAGGG-TTTTTTACACTAAA
189 AAAGTAATAAAATTCGGGAAAATAATACGAGCAAATGGCGGGAATAAGGGTTTTTTTACACTAAA
*
32572421 TTAATTTAAAAACACACTAAATTAATAAATT
254 TTAATTAAAAAACACACTAAATTAATAAATT
* *
32572452 TATAAAATTAGAAATTATGAACTTTTTTAAAGTAATAAAATACGGAGAAAAAAATACGAAGAAAT
1 TATAAAATTAGAAATTATGAAATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAAGAAAT
* ** *
32572517 GGCGAGGTAAGAGTGTTTTAAAAAAAATTTAAAAAATTCAGAAATAATTAATAAAAATATTTGAA
66 GGCGAGGTAAGAGTGTTTTACAAAATTTTTTAAAAATTCAGAAATAATTAATAAAAATATTTGAA
* *
32572582 ACAAAATATACTGAAATAATATAAAATAATAAAATACGAAAATAAAATTATTTTATTGAAAGTAA
131 ACAAAATGTACTAAAATAATATAAAATAATAAAATACGAAAATAAAATTATTTTATTGAAAGTAA
* *
32572647 TAAAATTTGGGAAAATAATACCAGCAAATGGCGGGAATAAGGGTTTTTTTACACTAAATTAATTT
196 TAAAATTCGGGAAAATAATACGAGCAAATGGCGGGAATAAGGGTTTTTTTACACTAAATTAA-TT
*
32572712 AAAAAACACACTAAATTTATAAATT
260 AAAAAACACACTAAATTAATAAATT
* *
32572737 TATAAAATTAGAAATTATGAAAATTTTTAAAGTAATAAAATGCAGAGAAAAAAATACGAAGAAAT
1 TATAAAATTAGAAATTATGAAATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAAGAAAT
* *
32572802 GGCCGAGGTAAGAGTGTTTTACTAACTTTTTT
66 GG-CGAGGTAAGAGTGTTTTACAAAATTTTTT
32572834 TTCAGCATGC
Statistics
Matches: 1100, Mismatches: 69, Indels: 85
0.88 0.06 0.07
Matches are distributed among these distances:
261 61 0.06
262 8 0.01
263 94 0.09
264 46 0.04
265 11 0.01
266 10 0.01
267 4 0.00
269 1 0.00
271 2 0.00
272 2 0.00
273 2 0.00
274 2 0.00
276 1 0.00
278 4 0.00
279 9 0.01
280 11 0.01
281 133 0.12
282 7 0.01
283 63 0.06
284 132 0.12
285 249 0.23
286 163 0.15
287 85 0.08
ACGTcount: A:0.51, C:0.06, G:0.13, T:0.30
Consensus pattern (284 bp):
TATAAAATTAGAAATTATGAAATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAAGAAAT
GGCGAGGTAAGAGTGTTTTACAAAATTTTTTAAAAATTCAGAAATAATTAATAAAAATATTTGAA
ACAAAATGTACTAAAATAATATAAAATAATAAAATACGAAAATAAAATTATTTTATTGAAAGTAA
TAAAATTCGGGAAAATAATACGAGCAAATGGCGGGAATAAGGGTTTTTTTACACTAAATTAATTA
AAAAACACACTAAATTAATAAATT
Found at i:32575080 original size:11 final size:11
Alignment explanation
Indices: 32575064--32575090 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
32575054 TTTATAACTT
32575064 AATTTGGATAC
1 AATTTGGATAC
32575075 AATTTGGATAC
1 AATTTGGATAC
32575086 AATTT
1 AATTT
32575091 AAGCATAAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.41
Consensus pattern (11 bp):
AATTTGGATAC
Found at i:32578160 original size:27 final size:27
Alignment explanation
Indices: 32578121--32578209 Score: 160
Period size: 27 Copynumber: 3.3 Consensus size: 27
32578111 AACACGACTA
*
32578121 GTGCCGCCAATGGGAATGGCACCATCG
1 GTGCCGCCCATGGGAATGGCACCATCG
*
32578148 GTGCCTCCCATGGGAATGGCACCATCG
1 GTGCCGCCCATGGGAATGGCACCATCG
32578175 GTGCCGCCCATGGGAATGGCACCATCG
1 GTGCCGCCCATGGGAATGGCACCATCG
32578202 GTGCCGCC
1 GTGCCGCC
32578210 AATCAGATAC
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.18, C:0.34, G:0.33, T:0.16
Consensus pattern (27 bp):
GTGCCGCCCATGGGAATGGCACCATCG
Found at i:32585796 original size:19 final size:19
Alignment explanation
Indices: 32585759--32585813 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 19
32585749 AAGTTAATAA
* * *
32585759 CAAATTTGATTATGGTGGG
1 CAAAATTGATTACGATGGG
32585778 CAAAATTGATTACGATGGG
1 CAAAATTGATTACGATGGG
*
32585797 TAACAA-TGATTAC-ATGG
1 CAA-AATTGATTACGATGG
32585814 ACCCAAAGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
18 4 0.13
19 25 0.81
20 2 0.06
ACGTcount: A:0.35, C:0.09, G:0.25, T:0.31
Consensus pattern (19 bp):
CAAAATTGATTACGATGGG
Found at i:32596233 original size:45 final size:45
Alignment explanation
Indices: 32596140--32596235 Score: 113
Period size: 45 Copynumber: 2.1 Consensus size: 45
32596130 TAACCTTTGG
* ** **
32596140 TATCCGGTGAAATCAGCACATAGCAATCACCTTTATTTTCATTAA
1 TATCCGGTGAAATCAGCACATAGCAATCACCTATATTGCCAACAA
* *
32596185 TATCCGGTGGAATCAGCACATAGC-ATCCACCTATATTGCCAACGA
1 TATCCGGTGAAATCAGCACATAGCAAT-CACCTATATTGCCAACAA
32596230 TATCCG
1 TATCCG
32596236 ATCCATTCCG
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
44 2 0.05
45 41 0.95
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (45 bp):
TATCCGGTGAAATCAGCACATAGCAATCACCTATATTGCCAACAA
Found at i:32597731 original size:28 final size:28
Alignment explanation
Indices: 32597691--32597844 Score: 227
Period size: 28 Copynumber: 5.5 Consensus size: 28
32597681 TGACTTTCGA
* *
32597691 CACTAAGTGTGCGAATTTAATTGTGAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
32597719 CACTAAGTGTGCGAGTTTAATTGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
*
32597747 CACTAAGTGTGAGAGTTTAATTGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
*
32597775 CACTAAGTGTGCGAGTTTAATGGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
* * * **
32597803 CACTAAGTGTGTGAGTTTGATTATTGAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
32597831 CACTAAGTGTGCGA
1 CACTAAGTGTGCGA
32597845 ACTTATTAAA
Statistics
Matches: 114, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 114 1.00
ACGTcount: A:0.31, C:0.10, G:0.27, T:0.32
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTAATTGTAAAG
Found at i:32598616 original size:47 final size:48
Alignment explanation
Indices: 32598565--32598918 Score: 282
Period size: 47 Copynumber: 7.6 Consensus size: 48
32598555 TTTTTATGCT
* *
32598565 TAAATGCTGCCCAATTTGTGGTA-AT-TATGCTGCCTAATTTTGGTGAA
1 TAAATGCTGTCCAATTT-TGGTATATATATGCTGCCAAATTTTGGTGAA
* * * * ** *
32598612 TAAATTCTGTCTAATTTT-GCATATACATGCTATCAAATTTT-GTGTA
1 TAAATGCTGTCCAATTTTGGTATATATATGCTGCCAAATTTTGGTGAA
* * * *
32598658 TAAGTGCTGTCCAA-ATTGGTATATGTATGCTGCCCAATTTTGGTGAA
1 TAAATGCTGTCCAATTTTGGTATATATATGCTGCCAAATTTTGGTGAA
* * * * *
32598705 TAAATGTTGTCCAATTTT-GCATATACATGCTGTCAAATTTT-GTGTA
1 TAAATGCTGTCCAATTTTGGTATATATATGCTGCCAAATTTTGGTGAA
* * * * * *
32598751 TAAGTGCTGTCCAA-ATTGGTATATGTTTGCTGCCCAATTTAGGTGAA
1 TAAATGCTGTCCAATTTTGGTATATATATGCTGCCAAATTTTGGTGAA
* * ** * *
32598798 TAAATGCTGTCCAATTTT-GCATATACATGCTGTTAGATTTT-GTGTA
1 TAAATGCTGTCCAATTTTGGTATATATATGCTGCCAAATTTTGGTGAA
* * * * * *
32598844 TAAGTACTGTCCAA-ATTGGTATATGTATGCTGCCCAATTTTGGTGTA
1 TAAATGCTGTCCAATTTTGGTATATATATGCTGCCAAATTTTGGTGAA
*
32598891 TAAATGCTGTCTAATTTT-GTATATATAT
1 TAAATGCTGTCCAATTTTGGTATATATAT
32598919 ATATGTATAT
Statistics
Matches: 229, Mismatches: 67, Indels: 22
0.72 0.21 0.07
Matches are distributed among these distances:
45 8 0.03
46 99 0.43
47 116 0.51
48 6 0.03
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (48 bp):
TAAATGCTGTCCAATTTTGGTATATATATGCTGCCAAATTTTGGTGAA
Found at i:32598659 original size:23 final size:23
Alignment explanation
Indices: 32598618--32598915 Score: 117
Period size: 23 Copynumber: 12.8 Consensus size: 23
32598608 TGAATAAATT
* *
32598618 CTGTCTAATTTTGCATATACATG
1 CTGTCAAATTTTGTATATACATG
* *
32598641 CTATCAAATTTTGTGTATA-AGTG
1 CTGTCAAATTTTGTATATACA-TG
* **
32598664 CTGTCCAAA-TTGGTATATGTATG
1 CTGT-CAAATTTTGTATATACATG
* * *
32598687 CTGCCCAATTTTGGTGA-ATAAATG
1 CTGTCAAATTTT-GT-ATATACATG
* * *
32598711 TTGTCCAATTTTGCATATACATG
1 CTGTCAAATTTTGTATATACATG
*
32598734 CTGTCAAATTTTGTGTATA-AGTG
1 CTGTCAAATTTTGTATATACA-TG
* ***
32598757 CTGTCCAAA-TTGGTATATGTTTG
1 CTGT-CAAATTTTGTATATACATG
* * * *
32598780 CTGCCCAATTTAGGTGA-ATAAATG
1 CTGTCAAATTT-TGT-ATATACATG
* *
32598804 CTGTCCAATTTTGCATATACATG
1 CTGTCAAATTTTGTATATACATG
* * * *
32598827 CTGTTAGATTTTGTGTATA-AGTA
1 CTGTCAAATTTTGTATATACA-TG
* **
32598850 CTGTCCAAA-TTGGTATATGTATG
1 CTGT-CAAATTTTGTATATACATG
* * * *
32598873 CTGCCCAATTTTGGTGTATAAATG
1 CTGTCAAATTTT-GTATATACATG
*
32598897 CTGTCTAATTTTGTATATA
1 CTGTCAAATTTTGTATATA
32598916 TATATATGTA
Statistics
Matches: 201, Mismatches: 55, Indels: 38
0.68 0.19 0.13
Matches are distributed among these distances:
22 14 0.07
23 121 0.60
24 64 0.32
25 2 0.01
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (23 bp):
CTGTCAAATTTTGTATATACATG
Found at i:32598697 original size:93 final size:93
Alignment explanation
Indices: 32598583--32598915 Score: 535
Period size: 93 Copynumber: 3.6 Consensus size: 93
32598573 GCCCAATTTG
* * * *
32598583 TGGTA-AT-TATGCTGCCTAATTTTGGTGAATAAATTCTGTCTAATTTTGCATATACATGCTATC
1 TGGTATATGTATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGCATATACATGCTGTC
32598646 AAATTTTGTGTATAAGTGCTGTCCAAAT
66 AAATTTTGTGTATAAGTGCTGTCCAAAT
*
32598674 TGGTATATGTATGCTGCCCAATTTTGGTGAATAAATGTTGTCCAATTTTGCATATACATGCTGTC
1 TGGTATATGTATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGCATATACATGCTGTC
32598739 AAATTTTGTGTATAAGTGCTGTCCAAAT
66 AAATTTTGTGTATAAGTGCTGTCCAAAT
* * *
32598767 TGGTATATGTTTGCTGCCCAATTTAGGTGAATAAATGCTGTCCAATTTTGCATATACATGCTGTT
1 TGGTATATGTATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGCATATACATGCTGTC
* *
32598832 AGATTTTGTGTATAAGTACTGTCCAAAT
66 AAATTTTGTGTATAAGTGCTGTCCAAAT
* * *
32598860 TGGTATATGTATGCTGCCCAATTTTGGTGTATAAATGCTGTCTAATTTTGTATATA
1 TGGTATATGTATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGCATATA
32598916 TATATATGTA
Statistics
Matches: 224, Mismatches: 16, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
91 5 0.02
92 2 0.01
93 217 0.97
ACGTcount: A:0.27, C:0.13, G:0.19, T:0.41
Consensus pattern (93 bp):
TGGTATATGTATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGCATATACATGCTGTC
AAATTTTGTGTATAAGTGCTGTCCAAAT
Found at i:32599553 original size:50 final size:49
Alignment explanation
Indices: 32599431--32599610 Score: 215
Period size: 50 Copynumber: 3.7 Consensus size: 49
32599421 CATATCGGTG
* * *
32599431 CCGATGCTATGTCCAAGACATGGTCTTACACTGACACTCATC-T-CG-A
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACACTCCTCGTCCGTA
* * *
32599477 GCCGATGTCATGTCCCAGACATGGTCTTACGCTGACTCTCCTCTGTCCGTA
1 -CCGATGCCATGTCCCAGACATGGTCTTACACTGACACTCCTC-GTCCGTA
* * *
32599528 CAGATGCCATGTCCCAGACATGGTCTTACACT-AGCACTCCTCGGTCTGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGA-CACTCCTC-GTCCGTA
32599578 CCGATGCCATGTCCCAGACATGGTCTTACACTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTG
32599611 GCACACTCAC
Statistics
Matches: 113, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
47 36 0.32
49 2 0.02
50 74 0.65
51 1 0.01
ACGTcount: A:0.21, C:0.32, G:0.21, T:0.27
Consensus pattern (49 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGACACTCCTCGTCCGTA
Found at i:32603289 original size:114 final size:114
Alignment explanation
Indices: 32603096--32603658 Score: 443
Period size: 114 Copynumber: 4.9 Consensus size: 114
32603086 AAAAATGTTA
* * * * *
32603096 ACCAAAACGCAGCGGTTTGGTCTCGATGTATAATACAATTAGTGGCG-TTA-GTTAAAAACGCCG
1 ACCAAAACGCAG-AGTTTGGTCTTGAGGTATAATAGAATTAGTGGCGCTTACG-AAAAAACGCCG
** * *
32603159 CTAAAGTATAAAATTAGCGGCGATTTTTTAGAATCGCCGCAAGATATGCAC
64 CTAAAGTATACTATTAGCGGCGCTTTTTTAGAAGCGCCGCAAGATATGCAC
* * *
32603210 ACCAAAACGCAGAGTTTGGTCTTGAGGTATATTAGGATTAGTGGCGCTTACGAAAAAACGCTGCT
1 ACCAAAACGCAGAGTTTGGTCTTGAGGTATAATAGAATTAGTGGCGCTTACGAAAAAACGCCGCT
* ** * * * *
32603275 AAAG-AGTACTATTAGCGGCGCGTTTGGAGAAGCACCGCTATAT-TTCTTA-
66 AAAGTA-TACTATTAGCGGCGCTTTTTTAGAAGCGCCGCAAGATATGC--AC
* * * * *
32603324 ACCAAAACTCA-ACGTTTTGGTCTTGATGTAAAATATAATTAGTGGCGTTTAC-AACAAAACGCC
1 ACCAAAACGCAGA-G-TTTGGTCTTGAGGTATAATAGAATTAGTGGCGCTTACGAA-AAAACGCC
* *
32603387 GCTAAA-TATCAGTATTAGCGGCGC--TTTCAGTTAAGCGCCGCAAGATATGCAC
63 GCTAAAGTAT-ACTATTAGCGGCGCTTTTTTAG--AAGCGCCGCAAGATATGCAC
* * * * *
32603439 ACCAAAACGCAGAGTTTGGTATTGAGGTATATTAGAATTAGTGGGGCTTATTG-GAAAACGCCGC
1 ACCAAAACGCAGAGTTTGGTCTTGAGGTATAATAGAATTAGTGGCGCTTA-CGAAAAAACGCCGC
* **
32603503 TAAAGTATACTATTAGCGGCGCTTTCTTAGAAGCGCCGCAAGATATATTA-
65 TAAAGTATACTATTAGCGGCGCTTTTTTAGAAGCGCCGCAAGATAT-GCAC
* * * ** * * * * * * *
32603553 ACCGAAACGCTGCGTTTAAATTTTGATGTATACTGGAATTAGTGGC-ATTCACGAGAAATCGCCG
1 ACCAAAACGCAGAGTTT-GGTCTTGAGGTATAATAGAATTAGTGGCGCTT-ACGAAAAAACGCCG
* * *
32603617 CTAAA-TCATATTATTAGCGGCGCTTTTTTATAAGTGCCGCAA
64 CTAAAGT-ATACTATTAGCGGCGCTTTTTTAGAAGCGCCGCAA
32603659 AAGATCTTTA
Statistics
Matches: 358, Mismatches: 66, Indels: 49
0.76 0.14 0.10
Matches are distributed among these distances:
113 36 0.10
114 162 0.45
115 153 0.43
116 7 0.02
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28
Consensus pattern (114 bp):
ACCAAAACGCAGAGTTTGGTCTTGAGGTATAATAGAATTAGTGGCGCTTACGAAAAAACGCCGCT
AAAGTATACTATTAGCGGCGCTTTTTTAGAAGCGCCGCAAGATATGCAC
Found at i:32603499 original size:229 final size:227
Alignment explanation
Indices: 32603093--32603524 Score: 586
Period size: 229 Copynumber: 1.9 Consensus size: 227
32603083 ACAAAAAATG
* * **
32603093 TTAACCAAAACGCAGCGGTTTGGTCTCGATGTATAATACAATTAGTGGCGTTAGTTAAAAACGCC
1 TTAACCAAAACGCAACGGTTTGGTCTCGATGTAAAATACAATTAGTGGCGTTAGCAAAAAACGCC
* *
32603158 GCTAAAGTATAAAATTAGCGGCGATTTTTTAGAATCGCCGCAAGATATGCACACCAAAACGCAGA
66 GCTAAAGTATAAAATTAGCGGCGATTTGTTA-AAGCGCCGCAAGATATGCACACCAAAACGCAGA
* * *
32603223 GTTTGGTCTTGAGGTATATTAGGATTAGTGGCGCTTACGAAAAAACGCTGCTAAAG-AGTACTAT
130 GTTTGGTATTGAGGTATATTAGAATTAGTGGCGCTTACGAAAAAACGCCGCTAAAGTA-TACTAT
32603287 TAGCGGCGCGTTTGGAGAAGCACCGCTATATTTC
194 TAGCGGCGCGTTTGGAGAAGCACCGCTATATTTC
* * * *
32603321 TTAACCAAAACTCAACGTTTTGGTCTTGATGTAAAATATAATTAGTGGCGTTTA-CAACAAAACG
1 TTAACCAAAACGCAACGGTTTGGTCTCGATGTAAAATACAATTAGTGGCG-TTAGCAA-AAAACG
** *
32603385 CCGCTAAA-TATCAGTATTAGCGGCGCTTTCAGTT-AAGCGCCGCAAGATATGCACACCAAAACG
64 CCGCTAAAGTAT-AAAATTAGCGGCGATTT--GTTAAAGCGCCGCAAGATATGCACACCAAAACG
* * *
32603448 CAGAGTTTGGTATTGAGGTATATTAGAATTAGTGGGGCTTATTG-GAAAACGCCGCTAAAGTATA
126 CAGAGTTTGGTATTGAGGTATATTAGAATTAGTGGCGCTTA-CGAAAAAACGCCGCTAAAGTATA
32603512 CTATTAGCGGCGC
190 CTATTAGCGGCGC
32603525 TTTCTTAGAA
Statistics
Matches: 178, Mismatches: 19, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
228 48 0.27
229 126 0.71
230 2 0.01
231 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (227 bp):
TTAACCAAAACGCAACGGTTTGGTCTCGATGTAAAATACAATTAGTGGCGTTAGCAAAAAACGCC
GCTAAAGTATAAAATTAGCGGCGATTTGTTAAAGCGCCGCAAGATATGCACACCAAAACGCAGAG
TTTGGTATTGAGGTATATTAGAATTAGTGGCGCTTACGAAAAAACGCCGCTAAAGTATACTATTA
GCGGCGCGTTTGGAGAAGCACCGCTATATTTC
Found at i:32603658 original size:229 final size:228
Alignment explanation
Indices: 32603150--32603658 Score: 569
Period size: 229 Copynumber: 2.2 Consensus size: 228
32603140 GCGTTAGTTA
* * *
32603150 AAAACGCCGCTAAAGTATAAAATTAGCGGCGATTTTTTAGAA-TCGCCGCAAGATATGCACACCA
1 AAAACGCCGCTAAA-TATAATATTAGCGGCGCTTTTTTATAAGT-GCCGCAAGATATGCACACCA
* * *
32603214 AAACGCAGAGTTTGGTCTTGAGGTATATTAGGATTAGTGGCGCTTACGAAAAAACGCTGCTAAAG
64 AAACGCAGAGTTTGGTATTGAGGTATATTAGAATTAGTGGCGCTTACGAAAAAACGCCGCTAAAG
* * * * * ***
32603279 AGTACTATTAGCGGCGCGTTTGGAGAAGCACCGCTATATTTCTTAACCAAAACTCAACGTTTTGG
129 AGTACTATTAGCGGCGCGTTTGGAGAAGCACCGCAAGATATATTAACCAAAACGCAACGTTTAAA
* * *
32603344 TCTTGATGTAAAATATAATTAGTGGCGTTTACAAC
194 TCTTGATGTAAAATAGAATTAGTGGCATTCACAAC
* ** *
32603379 AAAACGCCGCTAAATATCAGTATTAGCGGCGCTTTCAGT-TAAGCGCCGCAAGATATGCACACCA
1 AAAACGCCGCTAAATAT-AATATTAGCGGCGCTTT-TTTATAAGTGCCGCAAGATATGCACACCA
* * *
32603443 AAACGCAGAGTTTGGTATTGAGGTATATTAGAATTAGTGGGGCTTATTG-GAAAACGCCGCTAAA
64 AAACGCAGAGTTTGGTATTGAGGTATATTAGAATTAGTGGCGCTTA-CGAAAAAACGCCGCTAAA
** * * **
32603507 GTA-TACTATTAGCGGCGC-TTTCTTAGAAGCGCCGCAAGATATATTAACCGAAACGCTGCGTTT
128 G-AGTACTATTAGCGGCGCGTTT-GGAGAAGCACCGCAAGATATATTAACCAAAACGCAACGTTT
* * * * * *
32603570 AAATTTTGATGTATACTGGAATTAGTGGCATTCACGAG
191 AAATCTTGATGTAAAATAGAATTAGTGGCATTCACAAC
* *
32603608 AAATCGCCGCTAAATCATATTATTAGCGGCGCTTTTTTATAAGTGCCGCAA
1 AAAACGCCGCTAAAT-ATAATATTAGCGGCGCTTTTTTATAAGTGCCGCAA
32603659 AAGATCTTTA
Statistics
Matches: 231, Mismatches: 41, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
228 7 0.03
229 219 0.95
230 5 0.02
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (228 bp):
AAAACGCCGCTAAATATAATATTAGCGGCGCTTTTTTATAAGTGCCGCAAGATATGCACACCAAA
ACGCAGAGTTTGGTATTGAGGTATATTAGAATTAGTGGCGCTTACGAAAAAACGCCGCTAAAGAG
TACTATTAGCGGCGCGTTTGGAGAAGCACCGCAAGATATATTAACCAAAACGCAACGTTTAAATC
TTGATGTAAAATAGAATTAGTGGCATTCACAAC
Found at i:32604016 original size:22 final size:22
Alignment explanation
Indices: 32604000--32604054 Score: 85
Period size: 22 Copynumber: 2.5 Consensus size: 22
32603990 GGGTTATGGT
*
32604000 GTTTTGGGTTTAAGGTTTAGGA
1 GTTTGGGGTTTAAGGTTTAGGA
*
32604022 GTTTGGGGTTTAAGATTTAGG-
1 GTTTGGGGTTTAAGGTTTAGGA
32604043 GTTTGGGGTTTA
1 GTTTGGGGTTTA
32604055 GACTAATTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 12 0.39
22 19 0.61
ACGTcount: A:0.16, C:0.00, G:0.38, T:0.45
Consensus pattern (22 bp):
GTTTGGGGTTTAAGGTTTAGGA
Found at i:32605282 original size:44 final size:44
Alignment explanation
Indices: 32605219--32605312 Score: 145
Period size: 44 Copynumber: 2.1 Consensus size: 44
32605209 AATTCTTGCG
* *
32605219 TCCTTCTTGCCCAATTTCTTG-AATTCCCAAATCCGTAAATCGCC
1 TCCTTCTTGCCAAATTTCTTGAAATT-CCAAATCCCTAAATCGCC
*
32605263 TCCTTCTTGCCAAATTTCTTGAAATTCGAAATCCCTAAATCGCC
1 TCCTTCTTGCCAAATTTCTTGAAATTCCAAATCCCTAAATCGCC
32605307 TCCTTC
1 TCCTTC
32605313 CTCCTTCTAG
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
44 42 0.91
45 4 0.09
ACGTcount: A:0.23, C:0.33, G:0.09, T:0.35
Consensus pattern (44 bp):
TCCTTCTTGCCAAATTTCTTGAAATTCCAAATCCCTAAATCGCC
Found at i:32606980 original size:35 final size:35
Alignment explanation
Indices: 32606936--32607028 Score: 145
Period size: 35 Copynumber: 2.7 Consensus size: 35
32606926 TAAAGTTATA
*
32606936 TTTTAAATATTTTATTTTATTTTAATCACGAATTT
1 TTTTAAATATTTTATTTTATTTTAATCACGAATAT
*
32606971 TTTTAAATATTTTATTTTATTTGAATCACGAATAT
1 TTTTAAATATTTTATTTTATTTTAATCACGAATAT
*
32607006 TTTTAAATA-TTAATTTT-TTTTAA
1 TTTTAAATATTTTATTTTATTTTAA
32607029 AAGTTCAAAT
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
33 5 0.09
34 7 0.13
35 42 0.78
ACGTcount: A:0.33, C:0.04, G:0.03, T:0.59
Consensus pattern (35 bp):
TTTTAAATATTTTATTTTATTTTAATCACGAATAT
Found at i:32607067 original size:18 final size:17
Alignment explanation
Indices: 32607036--32607091 Score: 78
Period size: 16 Copynumber: 3.3 Consensus size: 17
32607026 TAAAAGTTCA
32607036 AATTTCATAACTTACGT
1 AATTTCATAACTTACGT
* *
32607053 AATTTACATATCTTACAT
1 AATTT-CATAACTTACGT
32607071 AA-TTCATAACTTACGT
1 AATTTCATAACTTACGT
32607087 AATTT
1 AATTT
32607092 AAATTTATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
16 12 0.36
17 9 0.27
18 12 0.36
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (17 bp):
AATTTCATAACTTACGT
Found at i:32607111 original size:29 final size:33
Alignment explanation
Indices: 32607041--32607113 Score: 100
Period size: 34 Copynumber: 2.3 Consensus size: 33
32607031 GTTCAAATTT
*
32607041 CATAACTTACGTAATTTACATATCTTACATAATT
1 CATAACTTACGTAATTTACATATCTTA-ATAATA
32607075 CATAACTTACGTAATTTA-A-AT-TT-ATAATA
1 CATAACTTACGTAATTTACATATCTTAATAATA
32607104 CATAACTTAC
1 CATAACTTAC
32607114 ATATAATACA
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
29 15 0.39
31 2 0.05
32 2 0.05
33 1 0.03
34 18 0.47
ACGTcount: A:0.41, C:0.16, G:0.03, T:0.40
Consensus pattern (33 bp):
CATAACTTACGTAATTTACATATCTTAATAATA
Found at i:32607130 original size:47 final size:45
Alignment explanation
Indices: 32607057--32607145 Score: 115
Period size: 47 Copynumber: 1.9 Consensus size: 45
32607047 TTACGTAATT
* * * *
32607057 TACATATCTTACATAATTCATAACTTACGTAATTTAAATTTATAA
1 TACATAACTTACATAATACATAACTTACATAACTTAAATTTATAA
*
32607102 TACATAACTTACATATAATACATAACTTATATAACTTAAATTTA
1 TACATAACTTAC--ATAATACATAACTTACATAACTTAAATTTA
32607146 GCAATCATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
45 11 0.30
47 26 0.70
ACGTcount: A:0.45, C:0.13, G:0.01, T:0.40
Consensus pattern (45 bp):
TACATAACTTACATAATACATAACTTACATAACTTAAATTTATAA
Found at i:32607215 original size:21 final size:21
Alignment explanation
Indices: 32607190--32607274 Score: 68
Period size: 24 Copynumber: 4.0 Consensus size: 21
32607180 ATCATATCAC
32607190 AACTTACATAACCAACATAAT
1 AACTTACATAACCAACATAAT
* *
32607211 GACTTACATAATAACCTACATAAT
1 AACTTAC---ATAACCAACATAAT
**
32607235 AACTTACATAATAATACATAAT
1 AACTTACATAACCA-ACATAAT
32607257 AA--TACATAA-CATACATAA
1 AACTTACATAACCA-ACATAA
32607275 ATTAAATAAG
Statistics
Matches: 53, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
19 8 0.15
20 7 0.13
21 10 0.19
22 9 0.17
24 19 0.36
ACGTcount: A:0.53, C:0.19, G:0.01, T:0.27
Consensus pattern (21 bp):
AACTTACATAACCAACATAAT
Found at i:32607221 original size:12 final size:12
Alignment explanation
Indices: 32607204--32607258 Score: 78
Period size: 12 Copynumber: 4.8 Consensus size: 12
32607194 TACATAACCA
*
32607204 ACATAATGACTT
1 ACATAATAACTT
*
32607216 ACATAATAACCT
1 ACATAATAACTT
32607228 ACATAATAACTT
1 ACATAATAACTT
32607240 ACATAATAA--T
1 ACATAATAACTT
32607250 ACATAATAA
1 ACATAATAA
32607259 TACATAACAT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
10 10 0.25
12 30 0.75
ACGTcount: A:0.53, C:0.16, G:0.02, T:0.29
Consensus pattern (12 bp):
ACATAATAACTT
Found at i:32607231 original size:24 final size:24
Alignment explanation
Indices: 32607197--32607265 Score: 92
Period size: 24 Copynumber: 3.0 Consensus size: 24
32607187 CACAACTTAC
* *
32607197 ATAACCAACATAATGACTTACATA
1 ATAACCTACATAATAACTTACATA
32607221 ATAACCTACATAATAACTTACATA
1 ATAACCTACATAATAACTTACATA
32607245 ATAA--TACATAATAA--TACATA
1 ATAACCTACATAATAACTTACATA
32607265 A
1 A
32607266 CATACATAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
20 7 0.16
22 10 0.23
24 26 0.60
ACGTcount: A:0.54, C:0.17, G:0.01, T:0.28
Consensus pattern (24 bp):
ATAACCTACATAATAACTTACATA
Found at i:32607254 original size:10 final size:10
Alignment explanation
Indices: 32607215--32607274 Score: 68
Period size: 12 Copynumber: 5.7 Consensus size: 10
32607205 CATAATGACT
32607215 TACATAATAA
1 TACATAATAA
32607225 CCTACATAATAA
1 --TACATAATAA
32607237 CTTACATAATAA
1 --TACATAATAA
32607249 TACATAATAA
1 TACATAATAA
*
32607259 TACATAA-CA
1 TACATAATAA
32607268 TACATAA
1 TACATAA
32607275 ATTAAATAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
9 8 0.17
10 17 0.37
12 21 0.46
ACGTcount: A:0.55, C:0.17, G:0.00, T:0.28
Consensus pattern (10 bp):
TACATAATAA
Found at i:32607295 original size:25 final size:24
Alignment explanation
Indices: 32607214--32607367 Score: 76
Period size: 25 Copynumber: 6.5 Consensus size: 24
32607204 ACATAATGAC
* * *
32607214 TTACATAATAACCTACAT-AATAAC
1 TTACATAAT-ACATAAATAAATAAG
*
32607238 TTACATAATA-ATACAT-AATAA-
1 TTACATAATACATAAATAAATAAG
32607259 -TACATAACATACATAAATTAAATAAG
1 TTACAT-A-ATACATAAA-TAAATAAG
* * * *
32607285 TTACATAATACACAAAAACAAAAAC
1 TTACATAATACATAAATA-AATAAG
* *
32607310 TTACAT-A-ACTTACAT-AATAA-
1 TTACATAATACATAAATAAATAAG
32607330 -TACATACCATACATAAATTAAATAAG
1 TTACATA--ATACATAAA-TAAATAAG
32607356 TTACATAATACA
1 TTACATAATACA
32607368 CAAAAACAAA
Statistics
Matches: 101, Mismatches: 13, Indels: 31
0.70 0.09 0.21
Matches are distributed among these distances:
19 5 0.05
20 5 0.05
21 5 0.05
22 14 0.14
23 14 0.14
24 13 0.13
25 33 0.33
26 1 0.01
27 11 0.11
ACGTcount: A:0.55, C:0.16, G:0.01, T:0.28
Consensus pattern (24 bp):
TTACATAATACATAAATAAATAAG
Found at i:32607324 original size:71 final size:71
Alignment explanation
Indices: 32607235--32607399 Score: 296
Period size: 71 Copynumber: 2.3 Consensus size: 71
32607225 CCTACATAAT
32607235 AACTTACATAA-TAATACATAATAATACATAACATACATAAATTAAATAAGTTACATAATACACA
1 AACTTACATAACT--TACATAATAATACATAACATACATAAATTAAATAAGTTACATAATACACA
32607299 AAAACAAA
64 AAAACAAA
*
32607307 AACTTACATAACTTACATAATAATACATACCATACATAAATTAAATAAGTTACATAATACACAAA
1 AACTTACATAACTTACATAATAATACATAACATACATAAATTAAATAAGTTACATAATACACAAA
32607372 AACAAA
66 AACAAA
32607378 AACTTACATAACTTACATAATA
1 AACTTACATAACTTACATAATA
32607400 TCCTACATCC
Statistics
Matches: 91, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
71 79 0.87
72 11 0.12
73 1 0.01
ACGTcount: A:0.57, C:0.16, G:0.01, T:0.26
Consensus pattern (71 bp):
AACTTACATAACTTACATAATAATACATAACATACATAAATTAAATAAGTTACATAATACACAAA
AACAAA
Found at i:32607429 original size:95 final size:83
Alignment explanation
Indices: 32607233--32607629 Score: 401
Period size: 95 Copynumber: 4.7 Consensus size: 83
32607223 AACCTACATA
*
32607233 ATAACTTACATAATAA--TACATAATAATACATAACATACATAAATTAAATAAGTTACATAATAC
1 ATAACTTACATAATAACTTACATAATAATACATACCATACATAAATTAAATAAGTTACATAATAC
32607296 ACAAAAAC----A---A-
66 ACAAAAACAAAAACTTAC
32607306 A-AACTTAC---ATAACTTACATAATAATACATACCATACATAAATTAAATAAGTTACATAATAC
1 ATAACTTACATAATAACTTACATAATAATACATACCATACATAAATTAAATAAGTTACATAATAC
32607367 ACAAAAACAAAAACTTAC
66 ACAAAAACAAAAACTTAC
**
32607385 ATAACTTACATAATATCCTACATCCCTACTTACATAATAATACATACTGTACATAAATTAAATAA
1 ATAACTTACAT-A-A---T--A-----ACTTACATAATAATACATACCATACATAAATTAAATAA
32607450 GTTACATAATACACAAAAACAAAAACTTAC
54 GTTACATAATACACAAAAACAAAAACTTAC
* *
32607480 ATAACTTACATAATAACTTACATAATAATGCATACCCTACATAAATTAAATAAGTTACATAATAC
1 ATAACTTACATAATAACTTACATAATAATACATACCATACATAAATTAAATAAGTTACATAATAC
** * *
32607545 ACAATAAGGTTAAAAACATAGT
66 ACAA-AA--ACAAAAACTTA-C
* * * * *
32607567 GTAACTTACATAAGAACTTACATAATAATACATACTC-TACATAATAATACATAACTTACATAA
1 ATAACTTACATAATAACTTACATAATAATACATAC-CATACATAA-ATTAAATAAGTTACATAA
32607630 GACATAACTT
Statistics
Matches: 276, Mismatches: 16, Indels: 49
0.81 0.05 0.14
Matches are distributed among these distances:
69 4 0.01
71 54 0.20
72 7 0.03
73 1 0.00
75 1 0.00
78 1 0.00
79 1 0.00
80 7 0.03
83 51 0.18
84 2 0.01
85 1 0.00
86 8 0.03
87 39 0.14
88 18 0.07
90 2 0.01
93 1 0.00
94 1 0.00
95 77 0.28
ACGTcount: A:0.53, C:0.17, G:0.03, T:0.28
Consensus pattern (83 bp):
ATAACTTACATAATAACTTACATAATAATACATACCATACATAAATTAAATAAGTTACATAATAC
ACAAAAACAAAAACTTAC
Found at i:32607497 original size:12 final size:12
Alignment explanation
Indices: 32607480--32607507 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
32607470 AAAAACTTAC
32607480 ATAACTTACATA
1 ATAACTTACATA
32607492 ATAACTTACATA
1 ATAACTTACATA
32607504 ATAA
1 ATAA
32607508 TGCATACCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.32
Consensus pattern (12 bp):
ATAACTTACATA
Found at i:32607609 original size:19 final size:19
Alignment explanation
Indices: 32607581--32607645 Score: 84
Period size: 19 Copynumber: 3.6 Consensus size: 19
32607571 CTTACATAAG
32607581 AACTTACATAATAATACAT
1 AACTTACATAATAATACAT
32607600 -ACTCTACATAATAATACAT
1 AACT-TACATAATAATACAT
*
32607619 AACTTAC---ATAAGACAT
1 AACTTACATAATAATACAT
32607635 AACTTACATAA
1 AACTTACATAA
32607646 GTTTCATAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
16 15 0.38
18 3 0.08
19 19 0.47
20 3 0.08
ACGTcount: A:0.51, C:0.18, G:0.02, T:0.29
Consensus pattern (19 bp):
AACTTACATAATAATACAT
Found at i:32607626 original size:9 final size:9
Alignment explanation
Indices: 32607614--32607717 Score: 112
Period size: 9 Copynumber: 12.2 Consensus size: 9
32607604 TACATAATAA
32607614 TACATAACT
1 TACATAACT
32607623 TACATAA--
1 TACATAACT
*
32607630 GACATAACT
1 TACATAACT
*
32607639 TACATAAGT
1 TACATAACT
*
32607648 TTCATAA--
1 TACATAACT
*
32607655 TACACAACT
1 TACATAACT
*
32607664 TACACAACT
1 TACATAACT
*
32607673 TACACAACT
1 TACATAACT
32607682 TACATAACT
1 TACATAACT
32607691 TACATAACT
1 TACATAACT
32607700 TACATAA--
1 TACATAACT
32607707 TACATAACT
1 TACATAACT
32607716 TA
1 TA
32607718 TTCCTAAATC
Statistics
Matches: 82, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
7 18 0.22
9 64 0.78
ACGTcount: A:0.46, C:0.22, G:0.02, T:0.30
Consensus pattern (9 bp):
TACATAACT
Found at i:32607629 original size:16 final size:16
Alignment explanation
Indices: 32607610--32607717 Score: 86
Period size: 16 Copynumber: 6.9 Consensus size: 16
32607600 ACTCTACATA
32607610 ATAATACATAACTTAC
1 ATAATACATAACTTAC
*
32607626 ATAAGACATAACTTAC
1 ATAATACATAACTTAC
*
32607642 AT-A-A-GT---TT-C
1 ATAATACATAACTTAC
*
32607651 ATAATACACAACTTAC
1 ATAATACATAACTTAC
* *
32607667 ACAACTTACACAACTTAC
1 ATAA--TACATAACTTAC
32607685 ATAACTTACATAACTTAC
1 ATAA--TACATAACTTAC
32607703 ATAATACATAACTTA
1 ATAATACATAACTTA
32607718 TTCCTAAATC
Statistics
Matches: 76, Mismatches: 7, Indels: 18
0.75 0.07 0.18
Matches are distributed among these distances:
9 3 0.04
10 3 0.04
11 1 0.01
13 1 0.01
14 1 0.01
15 3 0.04
16 32 0.42
18 32 0.42
ACGTcount: A:0.47, C:0.21, G:0.02, T:0.30
Consensus pattern (16 bp):
ATAATACATAACTTAC
Found at i:32607653 original size:25 final size:25
Alignment explanation
Indices: 32607614--32607717 Score: 136
Period size: 25 Copynumber: 4.1 Consensus size: 25
32607604 TACATAATAA
*
32607614 TACATAACTTACATAAGACATAACT
1 TACATAACTTACATAATACATAACT
* * *
32607639 TACATAAGTTTCATAATACACAACT
1 TACATAACTTACATAATACATAACT
* *
32607664 TACACAACTTACACAACTTACATAACT
1 TACATAACTTACATAA--TACATAACT
32607691 TACATAACTTACATAATACATAACT
1 TACATAACTTACATAATACATAACT
32607716 TA
1 TA
32607718 TTCCTAAATC
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
25 44 0.67
27 22 0.33
ACGTcount: A:0.46, C:0.22, G:0.02, T:0.30
Consensus pattern (25 bp):
TACATAACTTACATAATACATAACT
Found at i:32613179 original size:21 final size:21
Alignment explanation
Indices: 32613154--32613222 Score: 75
Period size: 21 Copynumber: 3.3 Consensus size: 21
32613144 CAACAACTTA
* *
32613154 AAGCAGAGGCGGCAACGAGGG
1 AAGCAGAGGCGACAACGAGAG
* * *
32613175 AAGCAGATGCTACAGCGAGAG
1 AAGCAGAGGCGACAACGAGAG
* *
32613196 AAGCAGAGGCCACAGCGAGAG
1 AAGCAGAGGCGACAACGAGAG
32613217 AAGCAG
1 AAGCAG
32613223 CGAGAGAAGC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.38, C:0.20, G:0.39, T:0.03
Consensus pattern (21 bp):
AAGCAGAGGCGACAACGAGAG
Found at i:32613225 original size:12 final size:12
Alignment explanation
Indices: 32613208--32613234 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
32613198 GCAGAGGCCA
32613208 CAGCGAGAGAAG
1 CAGCGAGAGAAG
32613220 CAGCGAGAGAAG
1 CAGCGAGAGAAG
32613232 CAG
1 CAG
32613235 AGGTTCAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.19, G:0.41, T:0.00
Consensus pattern (12 bp):
CAGCGAGAGAAG
Found at i:32613696 original size:43 final size:42
Alignment explanation
Indices: 32613649--32613764 Score: 126
Period size: 42 Copynumber: 2.7 Consensus size: 42
32613639 TCAAATAGTG
* *
32613649 GCGTTTGTGAAATAAGCGCCGCTAAATAACACTACTTTTAGCA
1 GCGTTTGTG-AACAAGCGCCGCTAAAGAACACTACTTTTAGCA
* * * *
32613692 GCGTTTTTGAACAAGCGCCGCTATAGAACATTACTTTTAGCG
1 GCGTTTGTGAACAAGCGCCGCTAAAGAACACTACTTTTAGCA
* *
32613734 GCGTTT-TCTACCAAAGCGCCGCTAAAGAACA
1 GCGTTTGT-GAAC-AAGCGCCGCTAAAGAACA
32613765 TGATCTTTAG
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
41 1 0.02
42 36 0.58
43 25 0.40
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (42 bp):
GCGTTTGTGAACAAGCGCCGCTAAAGAACACTACTTTTAGCA
Found at i:32613727 original size:42 final size:43
Alignment explanation
Indices: 32613662--32613782 Score: 149
Period size: 42 Copynumber: 2.8 Consensus size: 43
32613652 TTTGTGAAAT
* * *
32613662 AAGCGCCGCTAAATAACACTACTTTTAGCAGCGTTTT-TGAAC-
1 AAGCGCCGCTAAAGAACATTACTTTTAGCGGCGTTTTCT-AACA
* *
32613704 AAGCGCCGCTATAGAACATTACTTTTAGCGGCGTTTTCTACCA
1 AAGCGCCGCTAAAGAACATTACTTTTAGCGGCGTTTTCTAACA
*
32613747 AAGCGCCGCTAAAGAACATGA-TCTTTAGCGGCGTTT
1 AAGCGCCGCTAAAGAACATTACT-TTTAGCGGCGTTT
32613783 ATTTTCTTAG
Statistics
Matches: 69, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
42 36 0.52
43 33 0.48
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (43 bp):
AAGCGCCGCTAAAGAACATTACTTTTAGCGGCGTTTTCTAACA
Found at i:32613765 original size:43 final size:42
Alignment explanation
Indices: 32613648--32613782 Score: 148
Period size: 43 Copynumber: 3.2 Consensus size: 42
32613638 ATCAAATAGT
* * * *
32613648 GGCGTTTGTGAAATAAGCGCCGCTAAATAACACTACTTTTAGC
1 GGCGTTTTTG-AACAAGCGCCGCTAAAGAACATTACTTTTAGC
* *
32613691 AGCGTTTTTGAACAAGCGCCGCTATAGAACATTACTTTTAGC
1 GGCGTTTTTGAACAAGCGCCGCTAAAGAACATTACTTTTAGC
* *
32613733 GGCGTTTTCT-ACCAAAGCGCCGCTAAAGAACATGA-TCTTTAGC
1 GGCGTTTT-TGAAC-AAGCGCCGCTAAAGAACATTACT-TTTAGC
32613776 GGCGTTT
1 GGCGTTT
32613783 ATTTTCTTAG
Statistics
Matches: 79, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
42 38 0.48
43 41 0.52
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (42 bp):
GGCGTTTTTGAACAAGCGCCGCTAAAGAACATTACTTTTAGC
Found at i:32613795 original size:43 final size:42
Alignment explanation
Indices: 32613661--32613831 Score: 143
Period size: 43 Copynumber: 4.0 Consensus size: 42
32613651 GTTTGTGAAA
* * **
32613661 TAAGCGCCGCTAAATAACACT-A-CTTTTAGCAGCGTTTTTGAAC
1 TAAGCGCCGCTAAAGAACA-TGATC-TTTAGCGGCGTTTTT-TTC
* * **
32613704 -AAGCGCCGCTATAGAACATTA-CTTTTAGCGGCGTTTTCTACC
1 TAAGCGCCGCTAAAGAACATGATC-TTTAGCGGCGTTTT-TTTC
*
32613746 AAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTTC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTT-TTTTC
* * * *
32613789 TTAGCGCCGCTAAAGATCATGTTCTTTAACGGCGTTTTTTTC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTC
32613831 T
1 T
32613832 GTAAGCGACG
Statistics
Matches: 110, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
41 1 0.01
42 40 0.36
43 67 0.61
44 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (42 bp):
TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTC
Found at i:32614154 original size:52 final size:52
Alignment explanation
Indices: 32614082--32614182 Score: 148
Period size: 52 Copynumber: 1.9 Consensus size: 52
32614072 ATTATGGTCA
* * * *
32614082 AACCGTAATTTAGTTTACTTTAGGATTATATTAATTTAATTATCATAAATTG
1 AACCATAATCTAGGTTACTTTAGGATTATATTAATCTAATTATCATAAATTG
* *
32614134 AACCATAATCTAGGTTACTTTCGGATTATATTTATCTAATTATCATAAA
1 AACCATAATCTAGGTTACTTTAGGATTATATTAATCTAATTATCATAAA
32614183 CTTCCTTTGA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 43 1.00
ACGTcount: A:0.37, C:0.11, G:0.09, T:0.44
Consensus pattern (52 bp):
AACCATAATCTAGGTTACTTTAGGATTATATTAATCTAATTATCATAAATTG
Found at i:32614405 original size:19 final size:19
Alignment explanation
Indices: 32614381--32614417 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
32614371 TTTTTTTTAA
32614381 AAAATCATTAAAAT-CCAAC
1 AAAATCA-TAAAATGCCAAC
32614400 AAAATCATAAAATGCCAA
1 AAAATCATAAAATGCCAA
32614418 AAACAATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.59, C:0.19, G:0.03, T:0.19
Consensus pattern (19 bp):
AAAATCATAAAATGCCAAC
Found at i:32614678 original size:20 final size:19
Alignment explanation
Indices: 32614649--32614700 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
32614639 ATTTTCCTTT
*
32614649 TTTTTGTATTTTTATGAAAA
1 TTTTTATATTTTTA-GAAAA
*
32614669 TTTTTATATTTTTAGGAAA
1 TTTTTATATTTTTAGAAAA
*
32614688 -TTTTAAATTTTTA
1 TTTTTATATTTTTA
32614701 CACGTGACAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 12 0.41
19 4 0.14
20 13 0.45
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (19 bp):
TTTTTATATTTTTAGAAAA
Found at i:32614697 original size:18 final size:20
Alignment explanation
Indices: 32614656--32614700 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 20
32614646 TTTTTTTTGT
*
32614656 ATTTTTATGAAAATTTTTAT
1 ATTTTTATGAAAATTTTTAA
*
32614676 ATTTTTA-GGAAA-TTTTAA
1 ATTTTTATGAAAATTTTTAA
32614694 ATTTTTA
1 ATTTTTA
32614701 CACGTGACAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 12 0.52
19 4 0.17
20 7 0.30
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.58
Consensus pattern (20 bp):
ATTTTTATGAAAATTTTTAA
Found at i:32617492 original size:29 final size:30
Alignment explanation
Indices: 32617442--32617516 Score: 93
Period size: 29 Copynumber: 2.6 Consensus size: 30
32617432 TTTGGGTTTT
32617442 TTATAAAAATAATATTAAAAAATTA-ATTAA
1 TTATAAAAATAATATTAAAAAA-TAGATTAA
* *
32617472 TTATAAAAATAGTA-TGAAAAATAGATTAA
1 TTATAAAAATAATATTAAAAAATAGATTAA
*
32617501 TTATGAAAATAA-ATTA
1 TTATAAAAATAATATTA
32617517 TGTTTTACTA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
28 3 0.08
29 22 0.58
30 13 0.34
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (30 bp):
TTATAAAAATAATATTAAAAAATAGATTAA
Found at i:32618637 original size:28 final size:30
Alignment explanation
Indices: 32618576--32618638 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 30
32618566 TAGATTTTTA
* * * *
32618576 ATTTTTATAATAACAAATTTAACTCTCAAT
1 ATTTATATAATAAAAAATTTAACTCCCAAC
32618606 ATTTATATAA-AAAAAATTTAA-TCCCAAC
1 ATTTATATAATAAAAAATTTAACTCCCAAC
32618634 ATTTA
1 ATTTA
32618639 CTCATTATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 10 0.34
29 10 0.34
30 9 0.31
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.40
Consensus pattern (30 bp):
ATTTATATAATAAAAAATTTAACTCCCAAC
Found at i:32625284 original size:15 final size:16
Alignment explanation
Indices: 32625259--32625292 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
32625249 TCCGTTTTTC
32625259 TTAGATTAATTTATTT
1 TTAGATTAATTTATTT
*
32625275 TTAG-TTAATTTCTTT
1 TTAGATTAATTTATTT
32625290 TTA
1 TTA
32625293 AATTTAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (16 bp):
TTAGATTAATTTATTT
Found at i:32629210 original size:21 final size:21
Alignment explanation
Indices: 32629167--32629210 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
32629157 ATTGAATAAA
* *
32629167 ATAAAAAATAGTAAAAGACTT
1 ATAAAAAATACTAAAAGAATT
32629188 ATAAATAAATACTAAAA-AATT
1 ATAAA-AAATACTAAAAGAATT
32629209 AT
1 AT
32629211 TTAAATGCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.27
Consensus pattern (21 bp):
ATAAAAAATACTAAAAGAATT
Found at i:32633209 original size:21 final size:20
Alignment explanation
Indices: 32633163--32633213 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
32633153 CCTGATCAAT
**
32633163 ATACGACACATAAGTGCCTG
1 ATACGACACATAAACGCCTG
* *
32633183 AAACGACACATGAAACGTCTG
1 ATACGACACAT-AAACGCCTG
32633204 ATACGACACA
1 ATACGACACA
32633214 CGAGGTGCCT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 10 0.40
21 15 0.60
ACGTcount: A:0.41, C:0.25, G:0.18, T:0.16
Consensus pattern (20 bp):
ATACGACACATAAACGCCTG
Found at i:32633266 original size:44 final size:42
Alignment explanation
Indices: 32633163--32633280 Score: 114
Period size: 42 Copynumber: 2.7 Consensus size: 42
32633153 CCTGATCAAT
* *
32633163 ATACGACACATAAGTGCCTGAA-ACGACACATGAAACGTCTG
1 ATACGACACATAAGTGCCTGAATACGACACACGAAACGCCTG
* * ***
32633204 ATACGACACACGAGGTGCCT-AATACGACACACGAGGTGCCTG
1 ATACGACACA-TAAGTGCCTGAATACGACACACGAAACGCCTG
32633246 AAATACGACACATAAAGTGCCTGATATACGACACA
1 --ATACGACACAT-AAGTGCCTGA-ATACGACACA
32633281 TAAAGTGCCT
Statistics
Matches: 61, Mismatches: 9, Indels: 9
0.77 0.11 0.11
Matches are distributed among these distances:
41 12 0.20
42 21 0.34
44 17 0.28
45 1 0.02
46 10 0.16
ACGTcount: A:0.38, C:0.25, G:0.20, T:0.16
Consensus pattern (42 bp):
ATACGACACATAAGTGCCTGAATACGACACACGAAACGCCTG
Found at i:32633281 original size:23 final size:22
Alignment explanation
Indices: 32633163--32633293 Score: 130
Period size: 23 Copynumber: 6.0 Consensus size: 22
32633153 CCTGATCAAT
32633163 ATACGACACAT-AAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
32633184 A-ACGACACATGAAACGT--CTG-
1 ATACGACACAT-AAA-GTGCCTGA
** *
32633204 ATACGACACACGAGGTGCCT-A
1 ATACGACACATAAAGTGCCTGA
** *
32633225 ATACGACACACGAGGTGCCTGAA
1 ATACGACACATAAAGTGCCTG-A
32633248 ATACGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
32633270 TATACGACACATAAAGTGCCTGA
1 -ATACGACACATAAAGTGCCTGA
32633293 A
1 A
32633294 CGGCAAAGTC
Statistics
Matches: 94, Mismatches: 6, Indels: 19
0.79 0.05 0.16
Matches are distributed among these distances:
19 2 0.02
20 11 0.12
21 34 0.36
22 4 0.04
23 43 0.46
ACGTcount: A:0.38, C:0.24, G:0.21, T:0.17
Consensus pattern (22 bp):
ATACGACACATAAAGTGCCTGA
Found at i:32634704 original size:5 final size:5
Alignment explanation
Indices: 32634696--32634770 Score: 150
Period size: 5 Copynumber: 15.0 Consensus size: 5
32634686 TTTATTTTAC
32634696 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
32634746 ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA
32634771 TTTAAAACAT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 70 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:32637431 original size:291 final size:291
Alignment explanation
Indices: 32636907--32637475 Score: 1084
Period size: 291 Copynumber: 2.0 Consensus size: 291
32636897 CTTTTCCATC
*
32636907 TTGGTGCCTTCCATTGAACAATTGCCTCGACCTTCTTCGGATCAACTCTAATCCCATCAGTAGAT
1 TTGGTGCCTTCCATTGAACAATTGCCTCGACCTTCTTCGGATCAACTCTAATCCCATCAATAGAT
32636972 ACAACATGTCCCAAGAGTACTACCTCTGATAACCAGAATTCACATTTACTCAGCTTCTCGTACAA
66 ACAACATGTCCCAAGAGTACTACCTCTGATAACCAGAATTCACATTTACTCAGCTTCTCGTACAA
* *
32637037 CTGTTTTTCCCGTAGAATCTGTAACACTGTTTTGAGATGCTAATTATGTTCTACCTTAGTCTTCG
131 CTGTTTTTCCCGCAGAATCTGTAACACTGTTCTGAGATGCTAATTATGTTCTACCTTAGTCTTCG
* *
32637102 AATAAACTAATCTATCATCAATAAAAACCACCACGAATTGATCTAAAAACGACTAAAAGACATGA
196 AATAAACCAATATATCATCAATAAAAACCACCACGAATTGATCTAAAAACGACTAAAAGACATGA
32637167 TTCATGATATCTATAAAAACTCCAAATCGTG
261 TTCATGATATCTATAAAAACTCCAAATCGTG
32637198 TTGGTGCCTTCCATTGAACAATTGCCTCGACCTTCTTCGGATCAACTCTAATCCCATCAATAGAT
1 TTGGTGCCTTCCATTGAACAATTGCCTCGACCTTCTTCGGATCAACTCTAATCCCATCAATAGAT
32637263 ACAACATGTCCCAAGAGTACTACCTCTGATAACCAGAATTCACATTTACTCAGCTTCTCGTACAA
66 ACAACATGTCCCAAGAGTACTACCTCTGATAACCAGAATTCACATTTACTCAGCTTCTCGTACAA
32637328 CTGTTTTTCCCGCAGAATCTGTAACACTGTTCTGAGATGCTAATTATGTTCTACCTTAGTCTTCG
131 CTGTTTTTCCCGCAGAATCTGTAACACTGTTCTGAGATGCTAATTATGTTCTACCTTAGTCTTCG
*
32637393 AATAAACCAATATATCATCAATAAAAACCACCACGAATTGATCTAAAAACGACTGAAAGACATGA
196 AATAAACCAATATATCATCAATAAAAACCACCACGAATTGATCTAAAAACGACTAAAAGACATGA
32637458 TTCATGATATCTATAAAA
261 TTCATGATATCTATAAAA
32637476 GCAGCTGGGG
Statistics
Matches: 272, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
291 272 1.00
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.30
Consensus pattern (291 bp):
TTGGTGCCTTCCATTGAACAATTGCCTCGACCTTCTTCGGATCAACTCTAATCCCATCAATAGAT
ACAACATGTCCCAAGAGTACTACCTCTGATAACCAGAATTCACATTTACTCAGCTTCTCGTACAA
CTGTTTTTCCCGCAGAATCTGTAACACTGTTCTGAGATGCTAATTATGTTCTACCTTAGTCTTCG
AATAAACCAATATATCATCAATAAAAACCACCACGAATTGATCTAAAAACGACTAAAAGACATGA
TTCATGATATCTATAAAAACTCCAAATCGTG
Found at i:32638358 original size:18 final size:18
Alignment explanation
Indices: 32638325--32638377 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
32638315 ATTCACCTAA
*
32638325 ACCCAATCCAAACCCAAGT
1 ACCCAA-CCCAACCCAAGT
** *
32638344 ATTCAACCCAACCCAATT
1 ACCCAACCCAACCCAAGT
32638362 ACCCAACCCAACCCAA
1 ACCCAACCCAACCCAA
32638378 TCATAAAAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
18 24 0.86
19 4 0.14
ACGTcount: A:0.42, C:0.45, G:0.02, T:0.11
Consensus pattern (18 bp):
ACCCAACCCAACCCAAGT
Found at i:32638428 original size:6 final size:6
Alignment explanation
Indices: 32638419--32638453 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
32638409 AAATAAAATT
32638419 CTAAAA CTAAAA CTAAAA CTAAAA CTAAAA CTAAA
1 CTAAAA CTAAAA CTAAAA CTAAAA CTAAAA CTAAA
32638454 GTCTAAAAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.66, C:0.17, G:0.00, T:0.17
Consensus pattern (6 bp):
CTAAAA
Found at i:32638508 original size:9 final size:9
Alignment explanation
Indices: 32638493--32638577 Score: 50
Period size: 9 Copynumber: 9.4 Consensus size: 9
32638483 GTAGTGATTC
32638493 AATTCAGTT
1 AATTCAGTT
*
32638502 GATTCAGTT
1 AATTCAGTT
*
32638511 AATTCGGTT
1 AATTCAGTT
* *
32638520 AATTCGGGT
1 AATTCAGTT
*
32638529 AA-TCCGATT
1 AATTCAG-TT
32638538 AATTC-GATT
1 AATTCAG-TT
32638547 AATTC-GATT
1 AATTCAG-TT
* *
32638556 AATTCGGAT
1 AATTCAGTT
*
32638565 AATTCGGTT
1 AATTCAGTT
32638574 AATT
1 AATT
32638578 TTTAACCAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
8 3 0.05
9 59 0.91
10 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.18, T:0.41
Consensus pattern (9 bp):
AATTCAGTT
Found at i:32638524 original size:18 final size:18
Alignment explanation
Indices: 32638493--32638577 Score: 89
Period size: 18 Copynumber: 4.7 Consensus size: 18
32638483 GTAGTGATTC
* * *
32638493 AATTCAGTTGATTCAGTT
1 AATTCGGTTAATTCGGTT
*
32638511 AATTCGGTTAATTCGGGT
1 AATTCGGTTAATTCGGTT
* * *
32638529 AATCCGATTAATTCGATT
1 AATTCGGTTAATTCGGTT
* *
32638547 AATTCGATTAATTCGGAT
1 AATTCGGTTAATTCGGTT
32638565 AATTCGGTTAATT
1 AATTCGGTTAATT
32638578 TTTAACCAAA
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 55 1.00
ACGTcount: A:0.29, C:0.12, G:0.18, T:0.41
Consensus pattern (18 bp):
AATTCGGTTAATTCGGTT
Found at i:32638539 original size:27 final size:28
Alignment explanation
Indices: 32638509--32638577 Score: 88
Period size: 27 Copynumber: 2.5 Consensus size: 28
32638499 GTTGATTCAG
*
32638509 TTAATTCGGTTAATTCGGGTAA-TCCGA
1 TTAATTCGGTTAATTCGAGTAATTCCGA
* * *
32638536 TTAATTCGATTAATTCGATTAATTCGGA
1 TTAATTCGGTTAATTCGAGTAATTCCGA
32638564 -TAATTCGGTTAATT
1 TTAATTCGGTTAATT
32638578 TTTAACCAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
27 32 0.89
28 4 0.11
ACGTcount: A:0.29, C:0.12, G:0.17, T:0.42
Consensus pattern (28 bp):
TTAATTCGGTTAATTCGAGTAATTCCGA
Found at i:32641672 original size:23 final size:23
Alignment explanation
Indices: 32641646--32641712 Score: 89
Period size: 23 Copynumber: 2.9 Consensus size: 23
32641636 TGAAACGTCT
* *
32641646 AATACGACACACGAGGTGCCTGA
1 AATACGACACACAAAGTGCCTGA
*
32641669 AATACGACACATAAAGTGCCTGA
1 AATACGACACACAAAGTGCCTGA
* *
32641692 TATACGACACATAAAGTGCCT
1 AATACGACACACAAAGTGCCT
32641713 AAACAGTAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.39, C:0.24, G:0.19, T:0.18
Consensus pattern (23 bp):
AATACGACACACAAAGTGCCTGA
Found at i:32641711 original size:46 final size:42
Alignment explanation
Indices: 32641604--32641716 Score: 117
Period size: 46 Copynumber: 2.6 Consensus size: 42
32641594 TACCTGATCA
32641604 ATATACGACACATAAGTGCCTGAAACGACACATGAAACGTCT
1 ATATACGACACATAAGTGCCTGAAACGACACATGAAACGTCT
* *
32641646 A-ATACGACACACGAGGTGCCTGAAATACGACACAT-AAA-GTGCCT
1 ATATACGACACA-TAAGTGCCTG-AA-ACGACACATGAAACGT--CT
32641690 GATATACGACACATAAAGTGCCT-AAAC
1 -ATATACGACACAT-AAGTGCCTGAAAC
32641717 AGTAAAGCCG
Statistics
Matches: 59, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
41 10 0.17
42 11 0.19
43 7 0.12
44 13 0.22
45 1 0.02
46 17 0.29
ACGTcount: A:0.41, C:0.24, G:0.18, T:0.18
Consensus pattern (42 bp):
ATATACGACACATAAGTGCCTGAAACGACACATGAAACGTCT
Found at i:32643064 original size:5 final size:5
Alignment explanation
Indices: 32643056--32643121 Score: 118
Period size: 5 Copynumber: 13.6 Consensus size: 5
32643046 TTTATTTTAC
32643056 ATAAT ATAAT ATAAT ATAAT AT-A- ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
32643104 ATAAT ATAAT ATAAT ATA
1 ATAAT ATAAT ATAAT ATA
32643122 TTTAAAACAT
Statistics
Matches: 59, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
3 2 0.03
4 2 0.03
5 55 0.93
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATAAT
Found at i:32645816 original size:25 final size:26
Alignment explanation
Indices: 32645788--32645856 Score: 79
Period size: 25 Copynumber: 2.7 Consensus size: 26
32645778 TTCCCGATAT
32645788 TGGCTCGTATGAGCTTCCT-GTTACA
1 TGGCTCGTATGAGCTTCCTAGTTACA
* * * *
32645813 TGGCTCATAAGAGCTTCCTATTTATA
1 TGGCTCGTATGAGCTTCCTAGTTACA
32645839 T-GCTCGTATGAGCATTCC
1 TGGCTCGTATGAGC-TTCC
32645857 CGAATATGAA
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
25 27 0.75
26 9 0.25
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (26 bp):
TGGCTCGTATGAGCTTCCTAGTTACA
Found at i:32653896 original size:2 final size:2
Alignment explanation
Indices: 32653883--32653928 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
32653873 GATACCCTTT
*
32653883 GA GA GA GT GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
32653925 GA GA
1 GA GA
32653929 ACGGAATCTG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.48, C:0.00, G:0.50, T:0.02
Consensus pattern (2 bp):
GA
Found at i:32655599 original size:17 final size:17
Alignment explanation
Indices: 32655577--32655640 Score: 67
Period size: 17 Copynumber: 3.6 Consensus size: 17
32655567 AATCTTAGAG
32655577 TTCTAATTGTATACAGC
1 TTCTAATTGTATACAGC
* *
32655594 TTCTAATTGTGT-CTTAGAG
1 TTCTAATTGTATAC--AG-C
32655613 TTCTAATTGTATACAGC
1 TTCTAATTGTATACAGC
*
32655630 TTTTAATTGTA
1 TTCTAATTGTA
32655641 GCCCTTGATG
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
16 1 0.03
17 21 0.55
18 4 0.11
19 11 0.29
20 1 0.03
ACGTcount: A:0.27, C:0.12, G:0.14, T:0.47
Consensus pattern (17 bp):
TTCTAATTGTATACAGC
Found at i:32655616 original size:36 final size:36
Alignment explanation
Indices: 32655569--32655639 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
32655559 GATTATGTAA
32655569 TCTTAGAGTTCTAATTGTATACAGCTTCTAATTGTG
1 TCTTAGAGTTCTAATTGTATACAGCTTCTAATTGTG
*
32655605 TCTTAGAGTTCTAATTGTATACAGCTTTTAATTGT
1 TCTTAGAGTTCTAATTGTATACAGCTTCTAATTGT
32655640 AGCCCTTGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.25, C:0.13, G:0.15, T:0.46
Consensus pattern (36 bp):
TCTTAGAGTTCTAATTGTATACAGCTTCTAATTGTG
Found at i:32655618 original size:19 final size:19
Alignment explanation
Indices: 32655568--32655624 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
32655558 TGATTATGTA
32655568 ATCTTAGAGTTCTAATTGT
1 ATCTTAGAGTTCTAATTGT
*
32655587 ATAC--AG-CTTCTAATTGT
1 AT-CTTAGAGTTCTAATTGT
*
32655604 GTCTTAGAGTTCTAATTGT
1 ATCTTAGAGTTCTAATTGT
32655623 AT
1 AT
32655625 ACAGCTTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
16 1 0.03
17 11 0.37
18 4 0.13
19 13 0.43
20 1 0.03
ACGTcount: A:0.26, C:0.12, G:0.16, T:0.46
Consensus pattern (19 bp):
ATCTTAGAGTTCTAATTGT
Found at i:32660710 original size:17 final size:17
Alignment explanation
Indices: 32660688--32660751 Score: 67
Period size: 17 Copynumber: 3.6 Consensus size: 17
32660678 AATCTTAGAG
32660688 TTCTAATTGTATACAGC
1 TTCTAATTGTATACAGC
* *
32660705 TTCTAATTGTGT-CTTAGAG
1 TTCTAATTGTATAC--AG-C
32660724 TTCTAATTGTATACAGC
1 TTCTAATTGTATACAGC
*
32660741 TTTTAATTGTA
1 TTCTAATTGTA
32660752 GCCCTTGATG
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
16 1 0.03
17 21 0.55
18 4 0.11
19 11 0.29
20 1 0.03
ACGTcount: A:0.27, C:0.12, G:0.14, T:0.47
Consensus pattern (17 bp):
TTCTAATTGTATACAGC
Found at i:32660727 original size:36 final size:36
Alignment explanation
Indices: 32660680--32660750 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
32660670 GATTATGTAA
32660680 TCTTAGAGTTCTAATTGTATACAGCTTCTAATTGTG
1 TCTTAGAGTTCTAATTGTATACAGCTTCTAATTGTG
*
32660716 TCTTAGAGTTCTAATTGTATACAGCTTTTAATTGT
1 TCTTAGAGTTCTAATTGTATACAGCTTCTAATTGT
32660751 AGCCCTTGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.25, C:0.13, G:0.15, T:0.46
Consensus pattern (36 bp):
TCTTAGAGTTCTAATTGTATACAGCTTCTAATTGTG
Found at i:32660729 original size:19 final size:19
Alignment explanation
Indices: 32660679--32660735 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
32660669 TGATTATGTA
32660679 ATCTTAGAGTTCTAATTGT
1 ATCTTAGAGTTCTAATTGT
*
32660698 ATAC--AG-CTTCTAATTGT
1 AT-CTTAGAGTTCTAATTGT
*
32660715 GTCTTAGAGTTCTAATTGT
1 ATCTTAGAGTTCTAATTGT
32660734 AT
1 AT
32660736 ACAGCTTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
16 1 0.03
17 11 0.37
18 4 0.13
19 13 0.43
20 1 0.03
ACGTcount: A:0.26, C:0.12, G:0.16, T:0.46
Consensus pattern (19 bp):
ATCTTAGAGTTCTAATTGT
Found at i:32661017 original size:49 final size:48
Alignment explanation
Indices: 32660945--32661041 Score: 167
Period size: 49 Copynumber: 2.0 Consensus size: 48
32660935 TGAGGGAATT
* *
32660945 CTGTTGAATCCTTTATCATTGCGAGATTAGGTTGACTTAGGTGTTTTTA
1 CTGTTGAATCCGTTATCATTGCGAG-TTAGGTTGACTTAGGCGTTTTTA
32660994 CTGTTGAATCCGTTATCATTGCGAGTTAGGTTGACTTAGGCGTTTTTA
1 CTGTTGAATCCGTTATCATTGCGAGTTAGGTTGACTTAGGCGTTTTTA
32661042 AGCAAAGAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
48 22 0.48
49 24 0.52
ACGTcount: A:0.20, C:0.13, G:0.24, T:0.43
Consensus pattern (48 bp):
CTGTTGAATCCGTTATCATTGCGAGTTAGGTTGACTTAGGCGTTTTTA
Found at i:32662372 original size:22 final size:22
Alignment explanation
Indices: 32662328--32662372 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
32662318 GTTTTTTATT
*
32662328 TAATTTTTATAGTTTTTAAAGA
1 TAATTTTTATAGATTTTAAAGA
32662350 TAATTTTTATA-ATTTTAATAGA
1 TAATTTTTATAGATTTTAA-AGA
32662372 T
1 T
32662373 TTATGAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.56
Consensus pattern (22 bp):
TAATTTTTATAGATTTTAAAGA
Found at i:32662521 original size:23 final size:23
Alignment explanation
Indices: 32662495--32662548 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
32662485 CCAATTTAAT
* *
32662495 AATTTTAAAATCAAATTAAATCA
1 AATTTTAAAAACAAATCAAATCA
*
32662518 AATTTCAAAAACAAATCAAATCA
1 AATTTTAAAAACAAATCAAATCA
32662541 AATTTTAA
1 AATTTTAA
32662549 CAAATTATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.31
Consensus pattern (23 bp):
AATTTTAAAAACAAATCAAATCA
Found at i:32665441 original size:20 final size:20
Alignment explanation
Indices: 32665401--32665538 Score: 100
Period size: 20 Copynumber: 6.9 Consensus size: 20
32665391 ATTTCTGGTG
** *
32665401 GCTTGTCTACAACATTGGCA
1 GCTTGTCTACATTACTGGCA
* *
32665421 GCTTGTCTACAATACTAGCA
1 GCTTGTCTACATTACTGGCA
* * * **
32665441 GTTTATCTGCATTACTGGTG
1 GCTTGTCTACATTACTGGCA
*
32665461 GTTTGTCTACATTACTGGCA
1 GCTTGTCTACATTACTGGCA
* *
32665481 GTTTGTCTGCATTACTGGCA
1 GCTTGTCTACATTACTGGCA
32665501 GCTTGT-TCACATTTA-TGGCA
1 GCTTGTCT-ACA-TTACTGGCA
* * *
32665521 GTTTATCTGCATTACTGG
1 GCTTGTCTACATTACTGG
32665539 TGGCTTGTCC
Statistics
Matches: 94, Mismatches: 20, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
19 4 0.04
20 86 0.91
21 4 0.04
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.38
Consensus pattern (20 bp):
GCTTGTCTACATTACTGGCA
Found at i:32665482 original size:40 final size:40
Alignment explanation
Indices: 32665421--32665547 Score: 168
Period size: 40 Copynumber: 3.2 Consensus size: 40
32665411 AACATTGGCA
* *
32665421 GCTTGTCTACAATACTAGCAGTTTATCTGCATTACTGGTG
1 GCTTGTCTACATTACTGGCAGTTTATCTGCATTACTGGTG
* * **
32665461 GTTTGTCTACATTACTGGCAGTTTGTCTGCATTACTGGCA
1 GCTTGTCTACATTACTGGCAGTTTATCTGCATTACTGGTG
32665501 GCTTGT-TCACATTTA-TGGCAGTTTATCTGCATTACTGGTG
1 GCTTGTCT-ACA-TTACTGGCAGTTTATCTGCATTACTGGTG
32665541 GCTTGTC
1 GCTTGTC
32665548 CACAAACTGG
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
39 1 0.01
40 70 0.95
41 3 0.04
ACGTcount: A:0.18, C:0.20, G:0.22, T:0.40
Consensus pattern (40 bp):
GCTTGTCTACATTACTGGCAGTTTATCTGCATTACTGGTG
Found at i:32671656 original size:31 final size:31
Alignment explanation
Indices: 32671621--32671686 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
32671611 TTTTTTAGCT
* *
32671621 AAATTTTACCATAAATATTTTAAAAAGAGTC
1 AAATTTGACCATAAACATTTTAAAAAGAGTC
* * *
32671652 AAATTTGACTATAAACCTTTTAAAAGGAGTC
1 AAATTTGACCATAAACATTTTAAAAAGAGTC
32671683 AAAT
1 AAAT
32671687 AGTTGCTTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.47, C:0.11, G:0.09, T:0.33
Consensus pattern (31 bp):
AAATTTGACCATAAACATTTTAAAAAGAGTC
Found at i:32674290 original size:26 final size:26
Alignment explanation
Indices: 32674226--32674293 Score: 95
Period size: 26 Copynumber: 2.7 Consensus size: 26
32674216 AAAGTTCCGG
*
32674226 AGAGCCATTAAT-GGGAAGCTTACAA
1 AGAGCCATTAATCGGGAAGCTCACAA
*
32674251 AGAGCCTTTAATCGGGAAGCTCACAA
1 AGAGCCATTAATCGGGAAGCTCACAA
32674277 AGAGCCA-TATATCGGGA
1 AGAGCCATTA-ATCGGGA
32674294 CGCTTATAAG
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
25 13 0.34
26 25 0.66
ACGTcount: A:0.37, C:0.19, G:0.25, T:0.19
Consensus pattern (26 bp):
AGAGCCATTAATCGGGAAGCTCACAA
Found at i:32675992 original size:6 final size:6
Alignment explanation
Indices: 32675981--32676011 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
32675971 TAACCAACTT
32675981 TTAGAA TTAGAA TTAGAA TTAGAA TTA-AA TT
1 TTAGAA TTAGAA TTAGAA TTAGAA TTAGAA TT
32676012 GATAAATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.16
6 21 0.84
ACGTcount: A:0.48, C:0.00, G:0.13, T:0.39
Consensus pattern (6 bp):
TTAGAA
Found at i:32677977 original size:15 final size:15
Alignment explanation
Indices: 32677965--32678020 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
32677955 AAAATTCAGT
*
32677965 ACTTAAATTTTCAAT
1 ACTTAAATTTTCAAC
* *
32677980 ACATAATTTTTCAAC
1 ACTTAAATTTTCAAC
** *
32677995 ACTTATTTTTTCAGC
1 ACTTAAATTTTCAAC
32678010 ACTTAAATTTT
1 ACTTAAATTTT
32678021 AGTTTAGTAA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.34, C:0.16, G:0.02, T:0.48
Consensus pattern (15 bp):
ACTTAAATTTTCAAC
Done.