Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2899
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 200339
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:5423 original size:28 final size:28
Alignment explanation
Indices: 5391--5444 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
5381 ACAATAAAAG
5391 AAACATTCAATATTTCAATTTAATTATT
1 AAACATTCAATATTTCAATTTAATTATT
*
5419 AAACATTCAATATTTCAGTTTAATTA
1 AAACATTCAATATTTCAATTTAATTA
5445 GCATTAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.44
Consensus pattern (28 bp):
AAACATTCAATATTTCAATTTAATTATT
Found at i:9566 original size:25 final size:26
Alignment explanation
Indices: 9538--9586 Score: 91
Period size: 25 Copynumber: 1.9 Consensus size: 26
9528 CAATAAAGAA
9538 AACATTCAATATTTCA-TTTAATTTT
1 AACATTCAATATTTCAGTTTAATTTT
9563 AACATTCAATATTTCAGTTTAATT
1 AACATTCAATATTTCAGTTTAATT
9587 AGCATTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.37, C:0.12, G:0.02, T:0.49
Consensus pattern (26 bp):
AACATTCAATATTTCAGTTTAATTTT
Found at i:11609 original size:25 final size:25
Alignment explanation
Indices: 11581--11629 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
11571 ACAATAAAGA
11581 AACATTCAATATTTCAATTTAATTT
1 AACATTCAATATTTCAATTTAATTT
*
11606 AACATTCAATATTTCAGTTTAATT
1 AACATTCAATATTTCAATTTAATT
11630 AGCATTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.39, C:0.12, G:0.02, T:0.47
Consensus pattern (25 bp):
AACATTCAATATTTCAATTTAATTT
Found at i:13678 original size:25 final size:25
Alignment explanation
Indices: 13650--13701 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
13640 GAATACGTTA
13650 CAATAAAAGAAAACATTCAATATTT
1 CAATAAAAGAAAACATTCAATATTT
* ** *
13675 CAATTAATTATAACATTCAATATTT
1 CAATAAAAGAAAACATTCAATATTT
13700 CA
1 CA
13702 GTTTAATTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.50, C:0.13, G:0.02, T:0.35
Consensus pattern (25 bp):
CAATAAAAGAAAACATTCAATATTT
Found at i:20333 original size:25 final size:26
Alignment explanation
Indices: 20287--20335 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
20277 CAATAAAGAA
20287 AACATTCAATATTTCAATTTAATTCT
1 AACATTCAATATTTCAATTTAATTCT
*
20313 AACATTCAATA-TTCAGTTTAATT
1 AACATTCAATATTTCAATTTAATT
20336 AGCATTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.39, C:0.14, G:0.02, T:0.45
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTCT
Found at i:25251 original size:23 final size:25
Alignment explanation
Indices: 25208--25255 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
25198 AGAATGTGTA
*
25208 TATATAAATGAAATATGAATATTAT
1 TATATAAATGAAAGATGAATATTAT
25233 TATATAAAT-AAAGAT-AATATTAT
1 TATATAAATGAAAGATGAATATTAT
25256 CTATTAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 8 0.36
24 5 0.23
25 9 0.41
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (25 bp):
TATATAAATGAAAGATGAATATTAT
Found at i:25350 original size:12 final size:12
Alignment explanation
Indices: 25315--25358 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
25305 TGATACATAA
*
25315 AAATAATATAAGG
1 AAAT-ATATAATG
25328 AAATATATAATG
1 AAATATATAATG
* *
25340 AAATTTATAATA
1 AAATATATAATG
25352 AAATATA
1 AAATATA
25359 ATTTATAGAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
12 23 0.85
13 4 0.15
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (12 bp):
AAATATATAATG
Found at i:25363 original size:17 final size:18
Alignment explanation
Indices: 25341--25376 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
25331 TATATAATGA
25341 AATTTATA-ATAAAATAT
1 AATTTATAGATAAAATAT
25358 AATTTATAGATAAAATAT
1 AATTTATAGATAAAATAT
25376 A
1 A
25377 CAATAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (18 bp):
AATTTATAGATAAAATAT
Found at i:25484 original size:23 final size:24
Alignment explanation
Indices: 25435--25496 Score: 63
Period size: 23 Copynumber: 2.6 Consensus size: 24
25425 ACTATTTATA
* * *
25435 AAAATAAATAATATAAAAAGTATTT
1 AAAATAAA-ATTAAAAAAAGGATTT
25460 AAAATAAAATTAAAAAAAGGA-TT
1 AAAATAAAATTAAAAAAAGGATTT
**
25483 AAAATTGAATTAAA
1 AAAATAAAATTAAA
25497 TTAAAGAATT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
23 14 0.44
24 10 0.31
25 8 0.25
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.27
Consensus pattern (24 bp):
AAAATAAAATTAAAAAAAGGATTT
Found at i:27547 original size:24 final size:24
Alignment explanation
Indices: 27520--27573 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
27510 AATAAAAGAA
27520 AACATTCAATATTTCAATTTAATT
1 AACATTCAATATTTCAATTTAATT
*
27544 AACATTCAATATTTCAGTTTAATT
1 AACATTCAATATTTCAATTTAATT
*
27568 AGCATT
1 AACATT
27574 AATTTTTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.39, C:0.13, G:0.04, T:0.44
Consensus pattern (24 bp):
AACATTCAATATTTCAATTTAATT
Found at i:29652 original size:26 final size:26
Alignment explanation
Indices: 29623--29674 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
29613 AATAAAAGAA
29623 AACATTCAATATTTCAATTTAATTAG
1 AACATTCAATATTTCAATTTAATTAG
*
29649 AACATTCAATATTTCAGTTTAATTAG
1 AACATTCAATATTTCAATTTAATTAG
29675 CATTAATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.06, T:0.42
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTAG
Found at i:31738 original size:24 final size:24
Alignment explanation
Indices: 31714--31760 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
31704 TACGTTACAA
31714 TAAAGAAAACATTCAATATTTCAAT
1 TAAA-AAAACATTCAATATTTCAAT
* **
31739 TTAATTAACATTCAATATTTCA
1 TAAAAAAACATTCAATATTTCA
31761 GTTTAATTAG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 16 0.84
25 3 0.16
ACGTcount: A:0.47, C:0.13, G:0.02, T:0.38
Consensus pattern (24 bp):
TAAAAAAACATTCAATATTTCAAT
Found at i:31765 original size:24 final size:24
Alignment explanation
Indices: 31721--31774 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
31711 CAATAAAGAA
31721 AACATTCAATATTTCAATTTAATT
1 AACATTCAATATTTCAATTTAATT
*
31745 AACATTCAATATTTCAGTTTAATT
1 AACATTCAATATTTCAATTTAATT
*
31769 AGCATT
1 AACATT
31775 AATTTTTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.39, C:0.13, G:0.04, T:0.44
Consensus pattern (24 bp):
AACATTCAATATTTCAATTTAATT
Found at i:35955 original size:26 final size:26
Alignment explanation
Indices: 35925--35974 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
35915 AATAAAAGAA
35925 AACATTCAATATTTCAATTTAATTCT
1 AACATTCAATATTTCAATTTAATTCT
35951 AACATTCAATATTTCAATTTAATT
1 AACATTCAATATTTCAATTTAATT
35975 AGCATTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.40, C:0.14, G:0.00, T:0.46
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTCT
Found at i:36206 original size:68 final size:68
Alignment explanation
Indices: 36090--36225 Score: 254
Period size: 68 Copynumber: 2.0 Consensus size: 68
36080 TTCAATAAAG
*
36090 ATGATTATGTCGTACATGTGTTTCTGCGTTGAAACTAGGAGTGCACTATTACGTCCACTCCAAAC
1 ATGATTATGTCGTACATGTGTTTCTGCGTTGAAACTAGGAGTGAACTATTACGTCCACTCCAAAC
36155 AAA
66 AAA
*
36158 ATGATTATGTCGTACATGTGTTTCTGCGTTGAAACTAGGATTGAACTATTACGTCCACTCCAAAC
1 ATGATTATGTCGTACATGTGTTTCTGCGTTGAAACTAGGAGTGAACTATTACGTCCACTCCAAAC
36223 AAA
66 AAA
36226 CACTTGGACT
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 66 1.00
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (68 bp):
ATGATTATGTCGTACATGTGTTTCTGCGTTGAAACTAGGAGTGAACTATTACGTCCACTCCAAAC
AAA
Found at i:38315 original size:26 final size:26
Alignment explanation
Indices: 38269--38321 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
38259 TCAAACATGC
*
38269 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAAGGGT
* *
38295 ATTTCGGT-AATTTATCTCCTAAGGGT
1 ATTTAGGTCAATTTAAC-CCTAAGGGT
38321 A
1 A
38322 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAAGGGT
Found at i:39794 original size:26 final size:26
Alignment explanation
Indices: 39764--39819 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
39754 TGAAATGCCC
39764 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
39790 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
39816 ATCA
1 ATCA
39820 ATTTTTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:41003 original size:26 final size:26
Alignment explanation
Indices: 40967--41016 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
40957 ATTAAAAGAA
40967 AACATTCAATATTTCAATTTAATTCT
1 AACATTCAATATTTCAATTTAATTCT
* *
40993 AACATTGAATATTTCAGTTTAATT
1 AACATTCAATATTTCAATTTAATT
41017 AGCATTAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.38, C:0.12, G:0.04, T:0.46
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTCT
Found at i:45962 original size:6 final size:5
Alignment explanation
Indices: 45932--45961 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
45922 GTTCTTTATT
45932 TTTTA TTTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA -TTTTA TTTTA TTTTA TTTTA TTTT
45962 TCTCAACGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:47897 original size:26 final size:26
Alignment explanation
Indices: 47868--47917 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
47858 CAATAAAGAA
47868 AACATTCAATATTTCAATTTAATTCT
1 AACATTCAATATTTCAATTTAATTCT
* *
47894 AACATTCAATATTTTAGTTTAATT
1 AACATTCAATATTTCAATTTAATT
47918 AGCATTAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.38, C:0.12, G:0.02, T:0.48
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTCT
Found at i:50015 original size:26 final size:26
Alignment explanation
Indices: 49986--50037 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
49976 AATAAAAGAA
*
49986 AACATTCAATATTTCAATTTAATTAG
1 AACATTCAATATTCCAATTTAATTAG
*
50012 AACATTCAATATTCCAGTTTAATTAG
1 AACATTCAATATTCCAATTTAATTAG
50038 CATTAATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.40, C:0.13, G:0.06, T:0.40
Consensus pattern (26 bp):
AACATTCAATATTCCAATTTAATTAG
Found at i:62651 original size:28 final size:28
Alignment explanation
Indices: 62583--62764 Score: 276
Period size: 28 Copynumber: 6.5 Consensus size: 28
62573 CATGAGATTG
* * * *
62583 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
62612 GCACTAAGTGTGCGAGTTAGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
62640 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
62668 GCACTAAGTGTGCAAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
62696 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
62724 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
62751 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
62765 GACTTAATAT
Statistics
Matches: 142, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
27 24 0.17
28 101 0.71
29 17 0.12
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:74011 original size:21 final size:20
Alignment explanation
Indices: 73973--74012 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
73963 TAACCTACTA
* *
73973 AAATAATACTAAATAAATAC
1 AAATAATACAAAAAAAATAC
73993 AAATAGATACAAAAAAAATA
1 AAATA-ATACAAAAAAAATA
74013 AACAAATTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.70, C:0.07, G:0.03, T:0.20
Consensus pattern (20 bp):
AAATAATACAAAAAAAATAC
Found at i:74189 original size:20 final size:18
Alignment explanation
Indices: 74144--74198 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 18
74134 TTAGAAACGA
74144 TTAATATATATATAAAAC
1 TTAATATATATATAAAAC
* *
74162 ATACTATATGATATAATAAC
1 TTAATATAT-ATATAA-AAC
*
74182 TTAATATATTTATAAAA
1 TTAATATATATATAAAA
74199 ATAATAATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
18 9 0.30
19 11 0.37
20 10 0.33
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (18 bp):
TTAATATATATATAAAAC
Found at i:74373 original size:17 final size:17
Alignment explanation
Indices: 74351--74383 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
74341 AAATAATAAA
74351 ATAATATACAATAAAAT
1 ATAATATACAATAAAAT
*
74368 ATAATATATAATAAAA
1 ATAATATACAATAAAA
74384 GCTATAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (17 bp):
ATAATATACAATAAAAT
Found at i:74399 original size:23 final size:22
Alignment explanation
Indices: 74368--74439 Score: 69
Period size: 23 Copynumber: 3.3 Consensus size: 22
74358 ACAATAAAAT
*
74368 ATAATATATAATAAAAGCTATAA
1 ATAAAATATAATAAAA-CTATAA
74391 ATAAAATAT-ATAAAA-TATAA
1 ATAAAATATAATAAAACTATAA
* *
74411 ATAACATGATAAATAATAC-ATAA
1 ATAAAAT-AT-AATAAAACTATAA
74434 ATAAAA
1 ATAAAA
74440 ATATTATATA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
20 11 0.27
21 2 0.05
22 6 0.15
23 22 0.54
ACGTcount: A:0.65, C:0.04, G:0.03, T:0.28
Consensus pattern (22 bp):
ATAAAATATAATAAAACTATAA
Found at i:74448 original size:47 final size:51
Alignment explanation
Indices: 74387--74506 Score: 128
Period size: 49 Copynumber: 2.4 Consensus size: 51
74377 AATAAAAGCT
*
74387 ATAAATAAAATATATAAAATATAAATAACATG-ATAAATAATA-CATAAATA
1 ATAAATAATATATATAAAATATAAATAACATGTATAAATAATATCATAAA-A
* * *
74437 A-AAATATTATATATAATAAT-T---TTACATGTATAAATAATATTTATAAAA
1 ATAAATAATATATATAA-AATATAAATAACATGTATAAATAATA-TCATAAAA
74485 ATAAATAATATATATAAAATAT
1 ATAAATAATATATATAAAATAT
74507 TTAAAATAAA
Statistics
Matches: 59, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
46 6 0.10
47 10 0.17
48 5 0.08
49 34 0.58
50 4 0.07
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.35
Consensus pattern (51 bp):
ATAAATAATATATATAAAATATAAATAACATGTATAAATAATATCATAAAA
Found at i:74452 original size:15 final size:15
Alignment explanation
Indices: 74434--74547 Score: 63
Period size: 15 Copynumber: 7.4 Consensus size: 15
74424 TAATACATAA
74434 ATAAAAATATTATAT
1 ATAAAAATATTATAT
* * *
74449 ATAATAATTTTACAT
1 ATAAAAATATTATAT
* * * *
74464 GTATAAATAATATTT
1 ATAAAAATATTATAT
*
74479 ATAAAAATAAATAATAT
1 ATAAAAAT--ATTATAT
*
74496 ATATAAAATATT-TAAA
1 ATA-AAAATATTAT-AT
74512 ATAAATAA-ATTATAT
1 ATAAA-AATATTATAT
*
74527 AT-AAAATGTATATAT
1 ATAAAAATAT-TATAT
74542 ATAAAA
1 ATAAAA
74548 GGATTAAAAT
Statistics
Matches: 71, Mismatches: 19, Indels: 17
0.66 0.18 0.16
Matches are distributed among these distances:
13 2 0.03
14 3 0.04
15 42 0.59
16 12 0.17
17 7 0.10
18 5 0.07
ACGTcount: A:0.59, C:0.01, G:0.02, T:0.39
Consensus pattern (15 bp):
ATAAAAATATTATAT
Found at i:74488 original size:19 final size:19
Alignment explanation
Indices: 74466--74503 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
74456 TTTTACATGT
*
74466 ATAAATAATATTTATAAAA
1 ATAAATAATATATATAAAA
74485 ATAAATAATATATATAAAA
1 ATAAATAATATATATAAAA
74504 TATTTAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
ATAAATAATATATATAAAA
Found at i:74521 original size:31 final size:28
Alignment explanation
Indices: 74472--74533 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 28
74462 ATGTATAAAT
*
74472 AATATTTATAAAAATAAATAATATATATAA
1 AATATTTAAAAAAATAAAT--TATATATAA
74502 AATATTTAAAATAAATAAATTATATATAA
1 AATATTTAAAA-AAATAAATTATATATAA
74531 AAT
1 AAT
74534 GTATATATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 12 0.40
30 10 0.33
31 8 0.27
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (28 bp):
AATATTTAAAAAAATAAATTATATATAA
Found at i:79257 original size:26 final size:26
Alignment explanation
Indices: 79228--79277 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
79218 AATAAAAGAA
79228 AACATTCAATATTTCAATTTAATTCT
1 AACATTCAATATTTCAATTTAATTCT
*
79254 AACATTCAATATTTCAGTTTAATT
1 AACATTCAATATTTCAATTTAATT
79278 AGCATTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.38, C:0.14, G:0.02, T:0.46
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTCT
Found at i:83480 original size:25 final size:25
Alignment explanation
Indices: 83452--83505 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
83442 GAATACGTTA
83452 CAATAAAAGAAAACATTCAATATTT
1 CAATAAAAGAAAACATTCAATATTT
**
83477 CAATTTAAGAAAACATTCAATATTT
1 CAATAAAAGAAAACATTCAATATTT
83502 CAAT
1 CAAT
83506 TTAATTCTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.52, C:0.13, G:0.04, T:0.31
Consensus pattern (25 bp):
CAATAAAAGAAAACATTCAATATTT
Found at i:83524 original size:26 final size:26
Alignment explanation
Indices: 83461--83538 Score: 113
Period size: 25 Copynumber: 3.0 Consensus size: 26
83451 ACAATAAAAG
*
83461 AAAACATTCAATATTTCAATTTAA-G
1 AAAACATTCAATATTTCAATTTAATT
83486 AAAACATTCAATATTTCAATTTAATT
1 AAAACATTCAATATTTCAATTTAATT
** *
83512 CTAACATTCAATATTTCAGTTTAATT
1 AAAACATTCAATATTTCAATTTAATT
83538 A
1 A
83539 CAATTAATTT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
25 24 0.51
26 23 0.49
ACGTcount: A:0.44, C:0.13, G:0.03, T:0.41
Consensus pattern (26 bp):
AAAACATTCAATATTTCAATTTAATT
Found at i:85606 original size:26 final size:26
Alignment explanation
Indices: 85577--85626 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
85567 AATAAAAGAA
85577 AACATTCAATATTTCAATTTAATTCT
1 AACATTCAATATTTCAATTTAATTCT
*
85603 AACATTCAATATTTCAGTTTAATT
1 AACATTCAATATTTCAATTTAATT
85627 AGCATTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.38, C:0.14, G:0.02, T:0.46
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTCT
Found at i:86541 original size:26 final size:26
Alignment explanation
Indices: 86512--86567 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
86502 TGATAAAAAT
* *
86512 TGATAATGGGTTAGGTCAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86538 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86564 TGAT
1 TGAT
86568 GGGCATTTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.07, G:0.27, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:89745 original size:12 final size:12
Alignment explanation
Indices: 89715--89745 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
89705 ACTCGGGGAA
*
89715 GAGGCCATGGTC
1 GAGGCCGTGGTC
89727 GAGGCCGTGGTC
1 GAGGCCGTGGTC
89739 GAGGCCG
1 GAGGCCG
89746 AGTTAGTACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.26, G:0.48, T:0.13
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:94634 original size:26 final size:26
Alignment explanation
Indices: 94605--94660 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
94595 TGATAAAAAT
*
94605 TGATAATGGGTTAGGTCAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
94631 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
94657 TGAT
1 TGAT
94661 GGGCATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.09, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:99037 original size:26 final size:26
Alignment explanation
Indices: 99008--99057 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
98998 AATTAATGCT
99008 AATTAAACTGAAATATTGAATGTTAG
1 AATTAAACTGAAATATTGAATGTTAG
*
99034 AATTAAATTGAAATATTGAATGTT
1 AATTAAACTGAAATATTGAATGTT
99058 TTCTTTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.46, C:0.02, G:0.14, T:0.38
Consensus pattern (26 bp):
AATTAAACTGAAATATTGAATGTTAG
Found at i:101152 original size:26 final size:26
Alignment explanation
Indices: 101123--101174 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
101113 AAAATTAATG
101123 CTAATTAAACTAAAATATTGAATGTT
1 CTAATTAAACTAAAATATTGAATGTT
* *
101149 CTAATTAAATTGAAATATTGAATGTT
1 CTAATTAAACTAAAATATTGAATGTT
101175 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.44, C:0.06, G:0.10, T:0.40
Consensus pattern (26 bp):
CTAATTAAACTAAAATATTGAATGTT
Found at i:103272 original size:26 final size:26
Alignment explanation
Indices: 103243--103294 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
103233 AAAATTAATG
103243 CTAATTAAACTGAAATATTGAATGTT
1 CTAATTAAACTGAAATATTGAATGTT
*
103269 CTAATTAAATTGAAATATTGAATGTT
1 CTAATTAAACTGAAATATTGAATGTT
103295 TTCTTTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.42, C:0.06, G:0.12, T:0.40
Consensus pattern (26 bp):
CTAATTAAACTGAAATATTGAATGTT
Found at i:105396 original size:26 final size:26
Alignment explanation
Indices: 105357--105407 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
105347 AAATTAATAC
*
105357 TAATTAAACTGAAATGTTGAATGTTA
1 TAATTAAACTGAAATATTGAATGTTA
105383 TAATTAAA-TAGAAATATTGAATGTT
1 TAATTAAACT-GAAATATTGAATGTT
105408 TTCTTTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.45, C:0.02, G:0.14, T:0.39
Consensus pattern (26 bp):
TAATTAAACTGAAATATTGAATGTTA
Found at i:106221 original size:66 final size:61
Alignment explanation
Indices: 106102--106233 Score: 210
Period size: 66 Copynumber: 2.1 Consensus size: 61
106092 TGCCATTATT
*
106102 TTTAATTTTATAGCATGGAACGATAACATCTCAAACGAGCACTAGATATTGTTTCACATTG
1 TTTAATTTTATAGCATGGAACGATAACATCTCAAACGAACACTAGATATTGTTTCACATTG
106163 TTTAATTTTATAGCACTGGAACTCGATAACCATCTCAAACCGAACACTAGATATTGTTTCACATT
1 TTTAATTTTATAGCA-TGGAA--CGATAA-CATCTCAAA-CGAACACTAGATATTGTTTCACATT
106228 G
61 G
106229 TTTAA
1 TTTAA
106234 ATTGACACAA
Statistics
Matches: 65, Mismatches: 1, Indels: 5
0.92 0.01 0.07
Matches are distributed among these distances:
61 15 0.23
62 5 0.08
64 6 0.09
65 9 0.14
66 30 0.46
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.35
Consensus pattern (61 bp):
TTTAATTTTATAGCATGGAACGATAACATCTCAAACGAACACTAGATATTGTTTCACATTG
Found at i:107674 original size:22 final size:21
Alignment explanation
Indices: 107644--107690 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
107634 TGCAAATTAA
107644 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
107666 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
107687 ATCT
1 ATCT
107691 AAGATTGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:107704 original size:21 final size:21
Alignment explanation
Indices: 107661--107702 Score: 70
Period size: 19 Copynumber: 2.1 Consensus size: 21
107651 AGATTACAAG
107661 ATCATATCTTCAAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
107682 ATCATATC-T-AAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
107701 AT
1 AT
107703 ATTTAAAGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 12 0.57
20 1 0.05
21 8 0.38
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.38
Consensus pattern (21 bp):
ATCATATCTTCAAGATTGCAT
Found at i:108671 original size:84 final size:84
Alignment explanation
Indices: 108565--108795 Score: 322
Period size: 84 Copynumber: 2.7 Consensus size: 84
108555 TCTGCTATAC
* *
108565 TTTAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCA-TCTTCGATCTGCTCCACTACTACTT
1 TTTAACCTGTTACCCTATTGCTTAGGGGATTAAGGCG-AGTCTTCGATCTGCTCCACTACTACTT
*
108629 AGGGAGATAAGATCCACAAT
65 AGGGAGATAAGATCCACAAA
* * *
108649 TTTGACCTGTTACCCTATTGCTTAGGGGATTAAGGTGAGTCTTCGATCTGCTCCACTACTGCTTA
1 TTTAACCTGTTACCCTATTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTACTTA
**
108714 GGGAGATAAGATCTGCAAA
66 GGGAGATAAGATCCACAAA
*
108733 TTTAACCTGTTACCC-ATTTGCTTAGGGGATTAAGGCGAGTCGTCGTCGATCTGCTCCGCTACT
1 TTTAACCTGTTACCCTA-TTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACT
108796 GTAACACCCC
Statistics
Matches: 131, Mismatches: 11, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
83 2 0.02
84 111 0.85
85 1 0.01
87 17 0.13
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.32
Consensus pattern (84 bp):
TTTAACCTGTTACCCTATTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTACTTA
GGGAGATAAGATCCACAAA
Found at i:108714 original size:41 final size:40
Alignment explanation
Indices: 108579--108716 Score: 102
Period size: 41 Copynumber: 3.3 Consensus size: 40
108569 ACCTGTTACC
* *
108579 CTACTGCTTAGGGGGTTAAGGCGCATCTTCGATCTGCTCCA
1 CTACTGCTTAGGGGATTAAGGTG-ATCTTCGATCTGCTCCA
* * * * * *
108620 CTACTACTTAGGGAGA-TAAGATCCA-CAATTTTGACCTGTTACC-
1 CTACTGCTTAGGG-GATTAAGGT-GATC---TTCGATCTGCT-CCA
*
108663 CTATTGCTTAGGGGATTAAGGTGAGTCTTCGATCTGCTCCA
1 CTACTGCTTAGGGGATTAAGGTGA-TCTTCGATCTGCTCCA
108704 CTACTGCTTAGGG
1 CTACTGCTTAGGG
108717 AGATAAGATC
Statistics
Matches: 71, Mismatches: 16, Indels: 20
0.66 0.15 0.19
Matches are distributed among these distances:
40 3 0.04
41 37 0.52
42 4 0.06
43 24 0.34
44 3 0.04
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.31
Consensus pattern (40 bp):
CTACTGCTTAGGGGATTAAGGTGATCTTCGATCTGCTCCA
Found at i:110002 original size:125 final size:125
Alignment explanation
Indices: 109859--110121 Score: 427
Period size: 125 Copynumber: 2.1 Consensus size: 125
109849 ACCTGTTACC
* * *
109859 CTACTACTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGTTCT
1 CTACTGCTTAGGGGATTAAAGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
**
109924 ACAAATTTAACCTGTTACCCTACCGTTTAAGAGATTAAGGCGAGTCTTCGATCTACTCCA
66 ACAAATTTAACCTGTTACCCTACCGCGTAAGAGATTAAGGCGAGTCTTCGATCTACTCCA
109984 CTACTGCTTAGGGGATTAAAGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
1 CTACTGCTTAGGGGATTAAAGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
* ** * * *
110049 GCAAATTTAACCTGTTACCCTATTGCGTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
66 ACAAATTTAACCTGTTACCCTACCGCGTAAGAGATTAAGGCGAGTCTTCGATCTACTCCA
110109 CTACTGCTTAGGG
1 CTACTGCTTAGGG
110122 AGATAAGATC
Statistics
Matches: 127, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
125 127 1.00
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (125 bp):
CTACTGCTTAGGGGATTAAAGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
ACAAATTTAACCTGTTACCCTACCGCGTAAGAGATTAAGGCGAGTCTTCGATCTACTCCA
Found at i:110138 original size:84 final size:84
Alignment explanation
Indices: 109984--110258 Score: 496
Period size: 84 Copynumber: 3.3 Consensus size: 84
109974 ATCTACTCCA
*
109984 CTACTGCTTAGGGGATTAAAGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
1 CTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
110049 GCAAATTTAACCTGTTACC
66 GCAAATTTAACCTGTTACC
* *
110068 CTATTGCGTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
1 CTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
*
110133 ACAAATTTAACCTGTTACC
66 GCAAATTTAACCTGTTACC
*
110152 CTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCAGCTCCACTACTGCTTAGGGAGATAAGATCT
1 CTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
*
110217 GCAAATTTAACCTGTTATC
66 GCAAATTTAACCTGTTACC
110236 CTACTGCTTAGGGGATTAAGGCG
1 CTACTGCTTAGGGGATTAAGGCG
110259 CTGAATTTTG
Statistics
Matches: 182, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
84 182 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29
Consensus pattern (84 bp):
CTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
GCAAATTTAACCTGTTACC
Found at i:110176 original size:209 final size:204
Alignment explanation
Indices: 109821--110205 Score: 628
Period size: 209 Copynumber: 1.9 Consensus size: 204
109811 GGTGTTACAG
*
109821 CTACTGCTTAGGGAGATAAGATCTGCGAACCTGTTACCCTACTACTTAGGGGATTAAGGCGAGTC
1 CTACTGCTTAGGGAGATAAGATCTGCGAACCTGTTACCCTACTACGTAGGGGATTAAGGCGAGTC
* *
109886 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGTTCTACAAATTTAACCTGTTACCCTACCGTT
66 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTACCCTACCGCT
109951 TAAGAGATTAAGGCGAGTCTTCGATCTA-CTCCACTACTGCTTAGGGGATTAAAGCGAGTCTTCG
131 TAAGAGATTAAGGCGAGTCTTCGATC-AGCTCCACTACTGCTTAGGGGATTAAAGCGAGTCTTCG
110015 ATCTGCTCCA
195 ATCTGCTCCA
* * *
110025 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTATTGCGTAGGGGATTAAGGC
1 CTACTGCTTAGGGAGATAAGATCTGC-----GAACCTGTTACCCTACTACGTAGGGGATTAAGGC
110090 GAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTACCCTA
61 GAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTACCCTA
* * *
110155 CTGCTTAGGGGATTAAGGCGAGTCTTCGATCAGCTCCACTACTGCTTAGGG
126 CCGCTTAAGAGATTAAGGCGAGTCTTCGATCAGCTCCACTACTGCTTAGGG
110206 AGATAAGATC
Statistics
Matches: 166, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
204 26 0.16
208 1 0.01
209 139 0.84
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.29
Consensus pattern (204 bp):
CTACTGCTTAGGGAGATAAGATCTGCGAACCTGTTACCCTACTACGTAGGGGATTAAGGCGAGTC
TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTACCCTACCGCT
TAAGAGATTAAGGCGAGTCTTCGATCAGCTCCACTACTGCTTAGGGGATTAAAGCGAGTCTTCGA
TCTGCTCCA
Found at i:112304 original size:225 final size:225
Alignment explanation
Indices: 111910--112349 Score: 772
Period size: 225 Copynumber: 2.0 Consensus size: 225
111900 GAGACACAAC
* * *
111910 AAATATGGCTGTGGTGCTCCTTTGATACATATAGGATAGAGAATGAACAAACTCTTGCAGATCAT
1 AAATATGGCTGTGGTGCTCCTTTCATACATATAGGACAGAGAATGAACAAACTCTTACAGATCAT
* *
111975 CAGCCGAAAATCCAGCCTGGTCTAAGAGAACATGATAGTGGGTCTGCCTCGTGATTCCAATCATT
66 CAGCCGAAAACCCAGCCTGGTCTAAGAAAACATGATAGTGGGTCTGCCTCGTGATTCCAATCATT
* * * * *
112040 CCAGCATGGGTACCAAGGTAAAAATCGTTGTTTTTTGGATGGCATACTTTGTTGTCAATGACAGT
131 CCAGCATGGGTACCAAGGAAAAAATCATTATTCTTTGGATGGCATACTTTGTTGCCAATGACAGT
112105 ACCATGTAGCACATTGTCAGGAGCCACGAA
196 ACCATGTAGCACATTGTCAGGAGCCACGAA
* *
112135 AAATATGGTTGTGGTGCTCCTTTCATACATATAGGACAGAGAATGAACAAACTCTTATAGATCAT
1 AAATATGGCTGTGGTGCTCCTTTCATACATATAGGACAGAGAATGAACAAACTCTTACAGATCAT
112200 CAGCCGAAAACCCAGCCTGGTCTAAGAAAACATGATAGTGGGTCTGCCTCGTGATTCCAATCATT
66 CAGCCGAAAACCCAGCCTGGTCTAAGAAAACATGATAGTGGGTCTGCCTCGTGATTCCAATCATT
112265 CCAGCATGGGTACCAAGGAAAAAATCATTATTCTTTGGATGGCATACTTTGTTGCCAATGACAGT
131 CCAGCATGGGTACCAAGGAAAAAATCATTATTCTTTGGATGGCATACTTTGTTGCCAATGACAGT
112330 ACCATGTAGCACATTGTCAG
196 ACCATGTAGCACATTGTCAG
112350 AAGATCCTTG
Statistics
Matches: 203, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
225 203 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.28
Consensus pattern (225 bp):
AAATATGGCTGTGGTGCTCCTTTCATACATATAGGACAGAGAATGAACAAACTCTTACAGATCAT
CAGCCGAAAACCCAGCCTGGTCTAAGAAAACATGATAGTGGGTCTGCCTCGTGATTCCAATCATT
CCAGCATGGGTACCAAGGAAAAAATCATTATTCTTTGGATGGCATACTTTGTTGCCAATGACAGT
ACCATGTAGCACATTGTCAGGAGCCACGAA
Found at i:117134 original size:19 final size:19
Alignment explanation
Indices: 117110--117160 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
117100 TCATATCTTC
117110 AAGATTGCATATCATATCA
1 AAGATTGCATATCATATCA
*
117129 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCA
117148 AAGATTGCATATC
1 AAGATTGCATATC
117161 CTTAAAGATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.33
Consensus pattern (19 bp):
AAGATTGCATATCATATCA
Found at i:118396 original size:26 final size:26
Alignment explanation
Indices: 118367--118416 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
118357 AATCAATGCT
118367 AATTAAACTGAAATATTGAATGTTAG
1 AATTAAACTGAAATATTGAATGTTAG
*
118393 AATTAAATTGAAATATTGAATGTT
1 AATTAAACTGAAATATTGAATGTT
118417 TTCTTTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.46, C:0.02, G:0.14, T:0.38
Consensus pattern (26 bp):
AATTAAACTGAAATATTGAATGTTAG
Found at i:123177 original size:19 final size:19
Alignment explanation
Indices: 123141--123190 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
123131 TATTTTATAT
***
123141 ATATTATTTATTTTTGTAA
1 ATATTATTTATACATGTAA
123160 ATATTATTTATACATGTAA
1 ATATTATTTATACATGTAA
123179 A-ATTATTGTATA
1 ATATTATT-TATA
123191 TAATATTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
18 6 0.22
19 21 0.78
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.54
Consensus pattern (19 bp):
ATATTATTTATACATGTAA
Found at i:123215 original size:47 final size:43
Alignment explanation
Indices: 123161--123249 Score: 108
Period size: 45 Copynumber: 2.0 Consensus size: 43
123151 TTTTTGTAAA
123161 TATTATTTATACATGTAAAATTAT-TGTATATAATATTTTTATTTATG
1 TATTATTTAT-CATG-AAAATTATAT-TATAT-ATA-TTTTATTTATG
* *
123208 TATTATTTATCATGAAATTTATATTTTATATATTTTATTTAT
1 TATTATTTATCATGAAAATTATATTATATATATTTTATTTAT
123250 AGCTTTTATT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
43 10 0.26
44 3 0.08
45 11 0.28
46 5 0.13
47 10 0.26
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.58
Consensus pattern (43 bp):
TATTATTTATCATGAAAATTATATTATATATATTTTATTTATG
Found at i:123249 original size:20 final size:21
Alignment explanation
Indices: 123224--123289 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 21
123214 TTATCATGAA
*
123224 ATTTATATTTTA-TATATTTT
1 ATTTATATTTTATTATATATT
123244 ATTTATAGCTTTTATTATATATT
1 ATTTATA--TTTTATTATATATT
*
123267 ATTT-TATTATTTATTATTTATT
1 ATTTATA-T-TTTATTATATATT
123289 A
1 A
123290 GTACATATAA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
20 7 0.18
21 1 0.03
22 20 0.51
23 11 0.28
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (21 bp):
ATTTATATTTTATTATATATT
Found at i:123250 original size:13 final size:13
Alignment explanation
Indices: 123232--123274 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
123222 AAATTTATAT
123232 TTTATATATTTTA
1 TTTATATATTTTA
**
123245 TTTATAGCTTTTA
1 TTTATATATTTTA
123258 TTATATATTATTTTA
1 TT-TATA-TATTTTA
123273 TT
1 TT
123275 ATTTATTATT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
13 13 0.54
14 4 0.17
15 7 0.29
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (13 bp):
TTTATATATTTTA
Found at i:123273 original size:15 final size:14
Alignment explanation
Indices: 123224--123289 Score: 55
Period size: 14 Copynumber: 4.6 Consensus size: 14
123214 TTATCATGAA
*
123224 ATTTATATTTTATAT
1 ATTT-TATTATATAT
*
123239 ATTTTATT-TATAG
1 ATTTTATTATATAT
*
123252 CTTTTATTATATATT
1 ATTTTATTATATA-T
*
123267 ATTTTATTATTTAT
1 ATTTTATTATATAT
123281 -TATTTATTA
1 AT-TTTATTA
123290 GTACATATAA
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
13 12 0.28
14 16 0.37
15 15 0.35
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (14 bp):
ATTTTATTATATAT
Found at i:123451 original size:20 final size:18
Alignment explanation
Indices: 123420--123474 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
123410 ATATTATTAT
*
123420 TTTTATAAATATATTAAG
1 TTTTATACATATATTAAG
* *
123438 TTATTATACCATATAGTATG
1 TT-TTATA-CATATATTAAG
*
123458 TTTTATATATATATTAA
1 TTTTATACATATATTAA
123475 TCGTTTCTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
18 9 0.31
19 10 0.34
20 10 0.34
ACGTcount: A:0.40, C:0.04, G:0.05, T:0.51
Consensus pattern (18 bp):
TTTTATACATATATTAAG
Found at i:130598 original size:40 final size:40
Alignment explanation
Indices: 130523--130697 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 40
130513 AACCCAAGTA
* *
130523 CCTTCGGGATTTAG-CTGGATATAG-CAACTCA-CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACT-AGCACAAATG
* *
130562 CCTTCGGGTCTTAGCTCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
130602 CCTTCGGGACTTACCCCAGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
130642 CCTTCGGGACTTAGCCCGG----A-T--CTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
130675 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
130698 CATTCGAATA
Statistics
Matches: 119, Mismatches: 10, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
33 31 0.26
35 1 0.01
36 1 0.01
39 13 0.11
40 72 0.61
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:130672 original size:33 final size:33
Alignment explanation
Indices: 130630--130695 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
130620 GATATAGTCA
130630 CTAGCACAAATGCCTTCGGGACTTAGCCCGGAT
1 CTAGCACAAATGCCTTCGGGACTTAGCCCGGAT
130663 CTAGCACAAATGCCTTCGGGACTTAGCCCGGAT
1 CTAGCACAAATGCCTTCGGGACTTAGCCCGGAT
130696 ATCATTCGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.21
Consensus pattern (33 bp):
CTAGCACAAATGCCTTCGGGACTTAGCCCGGAT
Found at i:137688 original size:96 final size:96
Alignment explanation
Indices: 137587--138275 Score: 1147
Period size: 96 Copynumber: 7.2 Consensus size: 96
137577 TACATGATAC
*
137587 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATACATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
137652 GAATGGCCAATGTGATGAATGTGAAAGTGTA
66 TAATGGCCAATGTGATGAATGTGAAAGTGTA
137683 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
137748 GAATGGCCAATGTGATGAATGTGAAAGTGTA
66 TAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
137779 TATATATGTGGTAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGG
*
137844 CCTAATGGCCGATGTGATGAATGTGAAAGTG--
64 CCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
137875 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATACATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT--ATATGTGATAAGG
137940 CCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
64 CCTAATGGCCAATGTGATGAATGTGAAAGTG--TA
137975 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
138040 GAATGGCCAATGTGATGAATGTGAAAGTGTA
66 TAATGGCCAATGTGATGAATGTGAAAGTGTA
*
138071 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
138136 TAATGGCCGATGTGATGAATGTGAAAGTG--
66 TAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
138165 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGG
138230 CCTAATGGCCAATGTGATGAATGTGAAAGTGTA
64 CCTAATGGCCAATGTGATGAATGTGAAAGTGTA
138263 TA-A-ATGTGATAAG
1 TATATATGTGATAAG
138276 TCCCGAAGGG
Statistics
Matches: 563, Mismatches: 18, Indels: 24
0.93 0.03 0.04
Matches are distributed among these distances:
94 47 0.08
96 377 0.67
97 1 0.00
98 90 0.16
100 48 0.09
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:137714 original size:49 final size:49
Alignment explanation
Indices: 137587--138275 Score: 1127
Period size: 47 Copynumber: 14.3 Consensus size: 49
137577 TACATGATAC
*
137587 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
137634 TATACATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
137683 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
137730 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
137779 TATATATGTGGTAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
137828 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
137875 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
137924 TACATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TA
*
137975 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
138022 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
138071 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
138118 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
138165 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
138214 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
138263 TA-A-ATGTGATAAG
1 TATATATGTGATAAG
138276 TCCCGAAGGG
Statistics
Matches: 603, Mismatches: 27, Indels: 24
0.92 0.04 0.04
Matches are distributed among these distances:
47 280 0.46
48 1 0.00
49 275 0.46
51 47 0.08
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:138444 original size:37 final size:37
Alignment explanation
Indices: 138394--138501 Score: 171
Period size: 37 Copynumber: 2.9 Consensus size: 37
138384 CCGAGCTCTA
138394 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
138431 AAGACCCGATGACTACGTGTAGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* * *
138468 AAGACCCGATAACTTCGTGTGGAGATTACGTCCG
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCG
138502 AGCTAAAGGT
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:140051 original size:157 final size:159
Alignment explanation
Indices: 139762--140150 Score: 613
Period size: 157 Copynumber: 2.4 Consensus size: 159
139752 GAGAATTGAG
*
139762 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCGAGGCTAAGTCTCG
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATC-CGGCTAAGTCTCG
139827 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTAT
65 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTAT
*
139892 CCGGGCTAAG-TCTCGAAGAGCATTCGTGCT
130 CCGGACTAAGTTC-CGAAGAGCATTCGTGCT
*
139922 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGCTAAGT-T-GA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGCTAAGTCTCGA
139985 AGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATC
66 AGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATC
*
140050 CGGACTAAGTTCCGAAGAGCTTTCGTGCT
131 CGGACTAAGTTCCGAAGAGCATTCGTGCT
* * ** * * * * *
140079 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCG
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC-GGCTAAGTCTCG
140144 AAGAGCA
65 AAGAGCA
140151 ATCATGCTGG
Statistics
Matches: 211, Mismatches: 14, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
157 135 0.64
158 10 0.05
159 8 0.04
160 58 0.27
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.27
Consensus pattern (159 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGCTAAGTCTCGA
AGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATC
CGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:140132 original size:197 final size:199
Alignment explanation
Indices: 139762--140150 Score: 606
Period size: 197 Copynumber: 2.0 Consensus size: 199
139752 GAGAATTGAG
139762 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCGAGGCTAAGTCTCG
1 AGTGATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATGTATCGAGGCTAAGTCTCG
* *
139827 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTAT
65 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCTCGAAGAGCATTCGTGCTAGTGATATAT
** * * *
139892 CCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTC
130 CCGGGCTAAACCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTC
139957 GTGCT
195 GTGCT
*
139962 AGTGATGTATCC-GGCTAAGT-TGAAGAGCATTCGTGCTAGTGATGTATCCG-GGCTAAGTCTCG
1 AGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTAT-CGAGGCTAAGTCTCG
*
140024 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGT-TCCGAAGAGCTTTCGTGCTAGTGATATA
65 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCT-CGAAGAGCATTCGTGCTAGTGATATA
* * * *
140088 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
129 TCCGGGCTAAACCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCA
140151 ATCATGCTGG
Statistics
Matches: 174, Mismatches: 13, Indels: 7
0.90 0.07 0.04
Matches are distributed among these distances:
196 1 0.01
197 151 0.87
198 2 0.01
199 8 0.05
200 12 0.07
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.27
Consensus pattern (199 bp):
AGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTATCGAGGCTAAGTCTCGA
AGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCTCGAAGAGCATTCGTGCTAGTGATATATC
CGGGCTAAACCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCG
TGCT
Found at i:140162 original size:40 final size:40
Alignment explanation
Indices: 139762--140150 Score: 608
Period size: 40 Copynumber: 9.8 Consensus size: 40
139752 GAGAATTGAG
*
139762 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
139802 AGTGATGTAT-CGAGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCG-GGCTAAGTCTCGAAGAGCATTCGTGCT
139842 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
139882 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
139922 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
139962 AGTGATGTATCC-GGCTAAGT-T-GAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
139999 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
* *
140039 AGTGATGTATCCGGACTAAGT-TCCGAAGAGCTTTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCT-CGAAGAGCATTCGTGCT
* * ** *
140079 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
* * * * *
140119 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCA
140151 ATCATGCTGG
Statistics
Matches: 326, Mismatches: 16, Indels: 14
0.92 0.04 0.04
Matches are distributed among these distances:
37 28 0.09
38 9 0.03
39 12 0.04
40 275 0.84
41 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
Found at i:143722 original size:47 final size:47
Alignment explanation
Indices: 143668--144210 Score: 879
Period size: 47 Copynumber: 11.3 Consensus size: 47
143658 GTACATGATA
*
143668 GTATATATGTGATAAGGACTAATGGCCGATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
* *
143715 GTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
143762 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 G--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
* *
143811 GTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
*
143858 GTATATATATGTGATATGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 G--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
143907 GTATATATTTATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 G--TATA--TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
* *
143958 GTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
144005 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
*
144052 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATT
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
* *
144099 GTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
*
144146 GTATATATATGTGATAAGGCCTAATGGCGGATGTGATGAATGTGAAAGT
1 G--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
*
144195 GTATAAATGTGATAAG
1 GTATATATGTGATAAG
144211 TCCCGAAGGG
Statistics
Matches: 465, Mismatches: 23, Indels: 16
0.92 0.05 0.03
Matches are distributed among these distances:
47 280 0.60
49 143 0.31
51 42 0.09
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
Found at i:143772 original size:96 final size:96
Alignment explanation
Indices: 143669--144210 Score: 921
Period size: 96 Copynumber: 5.6 Consensus size: 96
143659 TACATGATAG
*
143669 TATATATGTGATAAGGACTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
143734 GAATGGCCAATGTGATGAATGTGAAAGTGTA
66 GAATGGCCAATGTGATGAATGTGAAAGTGTA
143765 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
143830 GAATGGCCAATGTGATGAATGTGAAAGTGTA
66 GAATGGCCAATGTGATGAATGTGAAAGTGTA
*
143861 TATATATGTGATATGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATTTATGTGATAA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA--TATGTGATAA
* *
143926 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
62 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
143959 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
144024 TAATGGCCGATGTGATGAATGTGAAAGTG--
66 GAATGGCCAATGTGATGAATGTGAAAGTGTA
*
144053 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
144118 GAATGGCCAATGTGATGAATGTGAAAGTGTA
66 GAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
144149 TATATATGTGATAAGGCCTAATGGCGGATGTGATGAATGTGAAAGTGTATAAATGTGATAAG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
144211 TCCCGAAGGG
Statistics
Matches: 425, Mismatches: 15, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
94 132 0.31
96 204 0.48
98 48 0.11
100 41 0.10
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
GAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:144379 original size:37 final size:37
Alignment explanation
Indices: 144329--144436 Score: 162
Period size: 37 Copynumber: 2.9 Consensus size: 37
144319 CCGAGCTCTA
*
144329 AAGACCCAATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
144366 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* * * *
144403 AAGACCCGATAACTTCGTGTGTAGATTACGTCCG
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCG
144437 AGCTAAAGGT
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:148832 original size:40 final size:40
Alignment explanation
Indices: 148758--148859 Score: 147
Period size: 40 Copynumber: 2.6 Consensus size: 40
148748 AACCCAAGTA
*
148758 CCTTCGGGAT-TTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGG-TCTTAGCCCGGATATAGCAACTAGCACAAATG
148797 CCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAG-CAACTAGCACAAATG
*
148837 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGTCTTAGCCCGGATAT
148860 CATTCGAATA
Statistics
Matches: 58, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
38 1 0.02
39 12 0.21
40 44 0.76
41 1 0.02
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAATG
Found at i:156944 original size:45 final size:45
Alignment explanation
Indices: 156687--156947 Score: 173
Period size: 45 Copynumber: 5.8 Consensus size: 45
156677 ATGTAGATAG
* * * * * *
156687 CAGATTTGACATCTCTGTCTT-GACAGGGAACAAATCGAAGATGA
1 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAAATGA
*
156731 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGAT-A
1 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAAATGA
* ** * * * *
156775 GCAGATCTAACATC-CGTGTGTTTACATC--GAAGCAGATCGAAGATGA
1 -CAGATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAAATGA
156821 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATC-AAAGAT-A
1 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAA-ATGA
* * * * *
156865 GCAGATCTGACAT-TCATGTGTTTACATC--GAAGCAGATCGAAAATGA
1 -CAGATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAAATGA
* * *
156911 CAGGTTTGGCCTCTTTGTATTAGACGGGGAGCAGATC
1 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATC
156948 AAAGATAACG
Statistics
Matches: 167, Mismatches: 31, Indels: 37
0.71 0.13 0.16
Matches are distributed among these distances:
43 2 0.01
44 34 0.20
45 114 0.68
46 15 0.09
47 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.26
Consensus pattern (45 bp):
CAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAAATGA
Found at i:157032 original size:90 final size:90
Alignment explanation
Indices: 156681--157021 Score: 481
Period size: 90 Copynumber: 3.8 Consensus size: 90
156671 GGGACAATGT
* * * **
156681 AGATAGCAGATTTGACATCTC-TGTCTTGACAGGGAA-CAAATCGAAGATGACAGATTTGGCATC
1 AGATAGCAGATCTGACAT-TCGTGTGTTTACATCGAAGCAAATCGAAGATGACAGATTTGGCATC
*
156744 TCTGTATTAGACGGGGAGCAGATCGA
65 TCTGTATTAGACGGGGAGCAGATCAA
* * *
156770 AGATAGCAGATCTAACATCCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCATCT
1 AGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAAATCGAAGATGACAGATTTGGCATCT
156835 CTGTATTAGACGGGGAGCAGATCAA
66 CTGTATTAGACGGGGAGCAGATCAA
* * * * *
156860 AGATAGCAGATCTGACATTCATGTGTTTACATCGAAGCAGATCGAAAATGACAGGTTTGGCCTCT
1 AGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAAATCGAAGATGACAGATTTGGCATCT
*
156925 TTGTATTAGACGGGGAGCAGATCAA
66 CTGTATTAGACGGGGAGCAGATCAA
* * *
156950 AGATAAC-GAATCTGACATTCGTGTGTTTGCATCGAAGCAAATCGAAGATGACAGATTTGGCGTC
1 AGATAGCAG-ATCTGACATTCGTGTGTTTACATCGAAGCAAATCGAAGATGACAGATTTGGCATC
157014 TCTGTATT
65 TCTGTATT
157022 TGACAAGGAG
Statistics
Matches: 225, Mismatches: 24, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
88 1 0.00
89 28 0.12
90 196 0.87
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (90 bp):
AGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAAATCGAAGATGACAGATTTGGCATCT
CTGTATTAGACGGGGAGCAGATCAA
Found at i:158507 original size:9 final size:9
Alignment explanation
Indices: 158467--158536 Score: 61
Period size: 9 Copynumber: 7.7 Consensus size: 9
158457 AATTTTAATC
158467 TTTATATA-
1 TTTATATAT
* *
158475 TATATACAT
1 TTTATATAT
158484 TTTATATAT
1 TTTATATAT
*
158493 AATTTATTTAT
1 --TTTATATAT
*
158504 TTTAAATAT
1 TTTATATAT
158513 TTTATATAT
1 TTTATATAT
* *
158522 ATTATTTAT
1 TTTATATAT
158531 TTTATA
1 TTTATA
158537 AATATTATTT
Statistics
Matches: 47, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
8 6 0.13
9 33 0.70
11 8 0.17
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.61
Consensus pattern (9 bp):
TTTATATAT
Found at i:158524 original size:20 final size:22
Alignment explanation
Indices: 158475--158524 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 22
158465 TCTTTATATA
*
158475 TATATACATTTTATATATAATT
1 TATATATATTTTATATATAATT
*
158497 TAT-T-TATTTTA-A-ATATTT
1 TATATATATTTTATATATAATT
158515 TATATATATT
1 TATATATATT
158525 ATTTATTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
18 8 0.33
19 2 0.08
20 10 0.42
21 1 0.04
22 3 0.12
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (22 bp):
TATATATATTTTATATATAATT
Found at i:158531 original size:18 final size:18
Alignment explanation
Indices: 158510--158548 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
158500 TTATTTTAAA
*
158510 TATTTTATATATATTATT
1 TATTTTATAAATATTATT
158528 TATTTTATAAATATTATT
1 TATTTTATAAATATTATT
158546 TAT
1 TAT
158549 ACATGTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
TATTTTATAAATATTATT
Found at i:158544 original size:27 final size:28
Alignment explanation
Indices: 158485--158549 Score: 80
Period size: 27 Copynumber: 2.3 Consensus size: 28
158475 TATATACATT
*
158485 TTATATATAATTTATTTATTTTAAATATT
1 TTATATAT-ATTTATTTATTTTAAATATA
158514 TTATATATA-TTATTTATTTTATAA-ATA
1 TTATATATATTTATTTATTTTA-AATATA
*
158541 TTATTTATA
1 TTATATATA
158550 CATGTAAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 22 0.67
28 3 0.09
29 8 0.24
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (28 bp):
TTATATATATTTATTTATTTTAAATATA
Found at i:158687 original size:19 final size:21
Alignment explanation
Indices: 158651--158697 Score: 62
Period size: 19 Copynumber: 2.3 Consensus size: 21
158641 TATTATTCCC
*
158651 TATATTATCTTCATTTTATTA
1 TATATTATATTCATTTTATTA
158672 TATATTATATT-A-TTTATTA
1 TATATTATATTCATTTTATTA
*
158691 TTTATTA
1 TATATTA
158698 GTACATATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 13 0.54
20 1 0.04
21 10 0.42
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (21 bp):
TATATTATATTCATTTTATTA
Found at i:158858 original size:20 final size:18
Alignment explanation
Indices: 158827--158881 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 18
158817 ATATTATTAT
*
158827 TTTTATAAATATATTAAG
1 TTTTATATATATATTAAG
* *
158845 TTATTATATCATATAGTATG
1 TT-TTATAT-ATATATTAAG
158865 TTTTATATATATATTAA
1 TTTTATATATATATTAA
158882 TCGTTTCTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
18 9 0.30
19 11 0.37
20 10 0.33
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.53
Consensus pattern (18 bp):
TTTTATATATATATTAAG
Found at i:159251 original size:71 final size:64
Alignment explanation
Indices: 159154--159304 Score: 171
Period size: 67 Copynumber: 2.3 Consensus size: 64
159144 TTATTTTAAG
* * *
159154 TTATATTTGCATGAAATATTATTGTATATATATTATGTAATTTATATTGTTATATTCATTATTTT
1 TTATATTTGCATGAAATATTA----ATGTATATTATGTAATTTATATAGTTAT-TT-ATCATTTT
159219 CTATGA
60 CTAT-A
* *
159225 TTATATCTGCATGAAATGA-TAATGTATATTATGTAATTTATGTAGTTATTTATCATTTTCTATA
1 TTATATTTGCATGAAAT-ATTAATGTATATTATGTAATTTATATAGTTATTTATCATTTTCTATA
159289 TTATATTTGCAT-AAAT
1 TTATATTTGCATGAAAT
159305 TGTTAAAGTA
Statistics
Matches: 73, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
63 4 0.05
64 12 0.16
65 11 0.15
66 2 0.03
67 25 0.34
71 18 0.25
72 1 0.01
ACGTcount: A:0.33, C:0.05, G:0.09, T:0.52
Consensus pattern (64 bp):
TTATATTTGCATGAAATATTAATGTATATTATGTAATTTATATAGTTATTTATCATTTTCTATA
Found at i:165097 original size:26 final size:26
Alignment explanation
Indices: 165068--165117 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
165058 AATAAAAGAA
165068 AACATTCAATATTTCAATTTAATTTT
1 AACATTCAATATTTCAATTTAATTTT
*
165094 AACATTCAATATTTCAGTTTAATT
1 AACATTCAATATTTCAATTTAATT
165118 AGCATTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.38, C:0.12, G:0.02, T:0.48
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTTT
Found at i:167196 original size:26 final size:26
Alignment explanation
Indices: 167167--167217 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
167157 AATAAAAGAA
*
167167 AACATTCAATATTTCAATTTAATTAT
1 AACAGTCAATATTTCAATTTAATTAT
*
167193 AACAGTCAATATTTCAGTTTAATTA
1 AACAGTCAATATTTCAATTTAATTA
167218 GCATTAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.41, C:0.12, G:0.04, T:0.43
Consensus pattern (26 bp):
AACAGTCAATATTTCAATTTAATTAT
Found at i:169315 original size:26 final size:26
Alignment explanation
Indices: 169286--169336 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
169276 AATAAAAGAA
169286 AACATTCAATATTTCAATTTAATTAT
1 AACATTCAATATTTCAATTTAATTAT
*
169312 AACATTCAATATTTCAGTTTAATTA
1 AACATTCAATATTTCAATTTAATTA
169337 GCATTAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.41, C:0.12, G:0.02, T:0.45
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTAT
Found at i:171433 original size:26 final size:26
Alignment explanation
Indices: 171404--171454 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
171394 AATAAAAGAA
171404 AACATTCAATATTTCAATTTAATTAT
1 AACATTCAATATTTCAATTTAATTAT
*
171430 AACATTCAATATTTCAGTTTAATTA
1 AACATTCAATATTTCAATTTAATTA
171455 GCATTAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.41, C:0.12, G:0.02, T:0.45
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTAT
Found at i:173549 original size:26 final size:26
Alignment explanation
Indices: 173520--173570 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
173510 AATAAAAGAA
173520 AACATTCAATATTTCAATTTAATTAT
1 AACATTCAATATTTCAATTTAATTAT
*
173546 AACATTCAATATTTCAGTTTAATTA
1 AACATTCAATATTTCAATTTAATTA
173571 GCATTAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.41, C:0.12, G:0.02, T:0.45
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTAT
Found at i:175669 original size:26 final size:26
Alignment explanation
Indices: 175640--175690 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
175630 AATAAAAGAA
175640 AACATTCAATATTTCAATTTAATTAT
1 AACATTCAATATTTCAATTTAATTAT
*
175666 AACATTCAATATTTCAGTTTAATTA
1 AACATTCAATATTTCAATTTAATTA
175691 GCATTAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.41, C:0.12, G:0.02, T:0.45
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTAT
Found at i:177786 original size:26 final size:26
Alignment explanation
Indices: 177757--177807 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
177747 AATAAAAGAA
177757 AACATTCAATATTTCAATTTAATTAT
1 AACATTCAATATTTCAATTTAATTAT
*
177783 AACATTCAATATTTCAGTTTAATTA
1 AACATTCAATATTTCAATTTAATTA
177808 GCATTAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.41, C:0.12, G:0.02, T:0.45
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTAT
Found at i:179899 original size:26 final size:26
Alignment explanation
Indices: 179870--179920 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
179860 AATAAAAGAA
179870 AACATTCAATATTTCAATTTAATTAT
1 AACATTCAATATTTCAATTTAATTAT
*
179896 AACATTCAATATTTCAGTTTAATTA
1 AACATTCAATATTTCAATTTAATTA
179921 GCATTAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.41, C:0.12, G:0.02, T:0.45
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTAT
Found at i:182016 original size:26 final size:26
Alignment explanation
Indices: 181987--182037 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
181977 AATAAAAGAA
181987 AACATTCAATATTTCAATTTAATTAT
1 AACATTCAATATTTCAATTTAATTAT
*
182013 AACATTCAATATTTCAGTTTAATTA
1 AACATTCAATATTTCAATTTAATTA
182038 GCATTAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.41, C:0.12, G:0.02, T:0.45
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTAT
Found at i:184133 original size:26 final size:26
Alignment explanation
Indices: 184104--184154 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
184094 AATAAAAGAA
184104 AACATTCAATATTTCAATTTAATTAT
1 AACATTCAATATTTCAATTTAATTAT
*
184130 AACATTCAATATTTCAGTTTAATTA
1 AACATTCAATATTTCAATTTAATTA
184155 GCATTAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.41, C:0.12, G:0.02, T:0.45
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTAT
Found at i:190444 original size:26 final size:26
Alignment explanation
Indices: 190415--190465 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
190405 AATAAAAGAA
190415 AACATTCAATATTTCAATTTAATTAT
1 AACATTCAATATTTCAATTTAATTAT
*
190441 AACATTCAATATTTCAGTTTAATTA
1 AACATTCAATATTTCAATTTAATTA
190466 GCATTAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.41, C:0.12, G:0.02, T:0.45
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTAT
Found at i:197105 original size:24 final size:24
Alignment explanation
Indices: 197069--197122 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
197059 TAATAAAATT
* *
197069 AATGCTAATTAAACTGAAATATTG
1 AATGTTAAATAAACTGAAATATTG
*
197093 AATGTTAAATAAATTGAAATATTG
1 AATGTTAAATAAACTGAAATATTG
197117 AATGTT
1 AATGTT
197123 TTCTTTTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.46, C:0.04, G:0.13, T:0.37
Consensus pattern (24 bp):
AATGTTAAATAAACTGAAATATTG
Found at i:199168 original size:25 final size:26
Alignment explanation
Indices: 199133--199181 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
199123 ATTAATGCTA
199133 ATTAAACTGAAATATTG-ATGTTTAT
1 ATTAAACTGAAATATTGAATGTTTAT
*
199158 ATTAAATTGAAATATTGAATGTTT
1 ATTAAACTGAAATATTGAATGTTT
199182 TCTTTTATTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.41, C:0.02, G:0.12, T:0.45
Consensus pattern (26 bp):
ATTAAACTGAAATATTGAATGTTTAT
Done.