Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold2155

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3618
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.30


Found at i:280 original size:92 final size:91

Alignment explanation


    Indices: 113--281  Score: 293
    Period size: 92  Copynumber: 1.8  Consensus size: 91

        103 GGATGGTTGA

                                                          ***                
        113 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAATGTCGAACTCGTTGAGTTG
          1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACCCCGAACTCGTTGAGTTG

                                      
        178 AGTCCGAGTTCGTGAGATGTAACTAG
         66 AGTCCGAGTTCGTGAGATGTAACTAG

                                                                 *           
        204 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACCCCGAGCTCGTTGAGTT
          1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACCCCGAACTCGTTGAGTT

                         
        269 GAGTCCGAGTTCG
         65 GAGTCCGAGTTCG

        282 CTTATGGGCG


Statistics
Matches: 73,  Mismatches: 4, Indels: 1
        0.94            0.05        0.01

Matches are distributed among these distances:
  91   34  0.47
  92   39  0.53

ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28


Consensus pattern (91 bp):   
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACCCCGAACTCGTTGAGTTG
AGTCCGAGTTCGTGAGATGTAACTAG
Done.