Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2864
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 146604
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Found at i:4165 original size:27 final size:27
Alignment explanation
Indices: 4121--4282 Score: 211
Period size: 27 Copynumber: 6.1 Consensus size: 27
4111 GGATGTTACA
* *
4121 TACCACATAAGGGAAAAACAATCATTG
1 TACCACATAAGGGCAAAACAATCATTT
* * *
4148 TACCACATAAAGGTAAAACAGTCATTT
1 TACCACATAAGGGCAAAACAATCATTT
* * *
4175 TACCATATAAGGGCAAAATAGTCATTT
1 TACCACATAAGGGCAAAACAATCATTT
* *
4202 TA-C-CATAAGGGCAAAATAGTCATTT
1 TACCACATAAGGGCAAAACAATCATTT
*
4227 TACCACATAAAGGCAAAACAATCATTT
1 TACCACATAAGGGCAAAACAATCATTT
4254 TACCACATAAGGGCAAAACAATCATTT
1 TACCACATAAGGGCAAAACAATCATTT
4281 TA
1 TA
4283 TCAATTAGGG
Statistics
Matches: 120, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
25 23 0.19
26 2 0.02
27 95 0.79
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (27 bp):
TACCACATAAGGGCAAAACAATCATTT
Found at i:4257 original size:79 final size:79
Alignment explanation
Indices: 4126--4282 Score: 233
Period size: 79 Copynumber: 2.0 Consensus size: 79
4116 TTACATACCA
* * *
4126 CATAAGGGAAAAACAATCATTGTACCACATAAAGGTAAAACAGTCATTTTACCATATAAGGGCAA
1 CATAAGGGAAAAACAATCATTGTACCACATAAAGGCAAAACAATCATTTTACCACATAAGGGCAA
* *
4191 AATAGTCATTTTAC
66 AACAATCATTTTAC
* * * *
4205 CATAAGGGCAAAATAGTCATTTTACCACATAAAGGCAAAACAATCATTTTACCACATAAGGGCAA
1 CATAAGGGAAAAACAATCATTGTACCACATAAAGGCAAAACAATCATTTTACCACATAAGGGCAA
4270 AACAATCATTTTA
66 AACAATCATTTTA
4283 TCAATTAGGG
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
79 69 1.00
ACGTcount: A:0.45, C:0.18, G:0.13, T:0.25
Consensus pattern (79 bp):
CATAAGGGAAAAACAATCATTGTACCACATAAAGGCAAAACAATCATTTTACCACATAAGGGCAA
AACAATCATTTTAC
Found at i:14183 original size:6 final size:6
Alignment explanation
Indices: 14172--14468 Score: 276
Period size: 6 Copynumber: 48.8 Consensus size: 6
14162 AACCAAAATG
*
14172 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC A-ATATT AGTAA-C
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGA-ATC AG-AATC
* * *
14220 AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATT AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* *
14269 AGAATT AG-GTGAC AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC
1 AGAATC AGAAT--C AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC
*
14318 AGAATC AGAATT AGTAA-C AGAATC AGAATC AGAATC AGAATTAC ATG-A-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAA-T-C A-GAATC
* *
14367 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
*
14415 AGTAA-C AGAATC AGAATC AGAATC AGAATT ACGTAAT- AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
14464 AGAAT
1 AGAAT
14469 GTGAATGCAA
Statistics
Matches: 244, Mismatches: 19, Indels: 56
0.76 0.06 0.18
Matches are distributed among these distances:
4 1 0.00
5 21 0.09
6 195 0.80
7 17 0.07
8 9 0.04
9 1 0.00
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:14348 original size:85 final size:85
Alignment explanation
Indices: 14172--14468 Score: 472
Period size: 85 Copynumber: 3.5 Consensus size: 85
14162 AACCAAAATG
* *
14172 AGAATCAGAATCAGAATCA-GTAACAGAATCAGAATCA-ATATTAGTAACAGAATCAGAATCAGA
1 AGAATCAGAATCAGAATTACGTAACAGAATCAGAATCAGA-ATCAGTAACAGAATCAGAATCAGA
* *
14235 ATCAGAATTAGGTGACAGAATT
65 ATCAGAATTA-GTAACAGAATC
* *
14257 AGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAA
1 AGAATCAGAATCAGAATTACGTAACAGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAA
14322 TCAGAATTAGTAACAGAATC
66 TCAGAATTAGTAACAGAATC
* *
14342 AGAATCAGAATCAGAATTACATGACAGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAA
1 AGAATCAGAATCAGAATTACGTAACAGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAA
*
14407 TCAGTATTAGTAACAGAATC
66 TCAGAATTAGTAACAGAATC
*
14427 AGAATCAGAATCAGAATTACGTAATAGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAATTACGTAACAGAATCAGAATCAGAAT
14469 GTGAATGCAA
Statistics
Matches: 199, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
85 148 0.74
86 50 0.25
87 1 0.01
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAGAATTACGTAACAGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAA
TCAGAATTAGTAACAGAATC
Found at i:16576 original size:40 final size:40
Alignment explanation
Indices: 16492--16760 Score: 350
Period size: 40 Copynumber: 6.8 Consensus size: 40
16482 CATTTGAATG
* * *
16492 ATATCCGGGCTAAG--TC-AAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
*
16529 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
16569 ATTTCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * * *
16609 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
*
16649 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
16689 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * * *
16729 ATACCCAGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
16761 TTGTGGTTAT
Statistics
Matches: 204, Mismatches: 22, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
37 13 0.06
39 4 0.02
40 181 0.89
41 6 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:16721 original size:120 final size:120
Alignment explanation
Indices: 16508--16780 Score: 467
Period size: 120 Copynumber: 2.3 Consensus size: 120
16498 GGGCTAAGTC
* * *
16508 AAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATTT
1 AAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATAT
*
16573 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATACCCGGGTTAAGACCCG
66 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATACCCAGGTTAAGACCCG
16628 AAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATAT
1 AAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATAT
*
16693 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCAGGTTAAGACCCG
66 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATACCCAGGTTAAGACCCG
* * *
16748 AAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 AAGGCAATTGTGCTAGTGATTTTATCCGGGCTAA
16781 ATTCCGAAGA
Statistics
Matches: 145, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
119 6 0.04
120 139 0.96
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (120 bp):
AAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATAT
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATACCCAGGTTAAGACCCG
Found at i:18291 original size:27 final size:27
Alignment explanation
Indices: 18221--18294 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
18211 AGCATGGCTG
* *
18221 CCAGA-ACAGAT-ATCGTGACAGAGTCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
*
18247 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGATACAGATAATGTGGCAGAGCCA
18274 CCAGAATA-AGATAATGTGGCA
1 CCAG-ATACAGATAATGTGGCA
18295 AACCCACCTA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
26 5 0.12
27 32 0.78
28 4 0.10
ACGTcount: A:0.38, C:0.20, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:18301 original size:27 final size:27
Alignment explanation
Indices: 18245--18302 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
18235 GTGACAGAGT
* * *
18245 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
18272 CACCAGAATA-AGATAATGTGGCAAACC
1 CACCAG-ATACAGATAATGTGGCAAACC
18299 CACC
1 CACC
18303 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 24 0.89
28 3 0.11
ACGTcount: A:0.38, C:0.26, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:18507 original size:22 final size:22
Alignment explanation
Indices: 18459--18517 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
18449 GTAAGTACAT
*
18459 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
18481 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
18503 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
18518 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:18685 original size:27 final size:26
Alignment explanation
Indices: 18605--18687 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
18595 TCGATCGGTC
* * *
18605 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
*
18631 ATACAGATATTGTGGCAGAGCCATCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
18658 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
18685 AAC
1 AAC
18688 GCTTCCTCCG
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 8 0.16
27 41 0.84
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:18916 original size:27 final size:27
Alignment explanation
Indices: 18886--19081 Score: 221
Period size: 27 Copynumber: 7.3 Consensus size: 27
18876 GGGGCAAAAT
* * *
18886 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
18913 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
18940 GGTATTTCTACCCTACAAGGGCATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
18967 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
18994 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
19021 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
19048 AGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
19075 AGTAATT
1 GGTAATT
19082 TCACAATCAA
Statistics
Matches: 144, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 144 1.00
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:19116 original size:27 final size:27
Alignment explanation
Indices: 19086--19548 Score: 549
Period size: 27 Copynumber: 17.1 Consensus size: 27
19076 GTAATTTCAC
* *
19086 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * * *
19113 AATCGAGAGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
19140 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* * *
19167 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
19194 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
** *
19221 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
19248 AA-CTGAGGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTATA
** *
19275 AATCGAGGGTAAAATAGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
19302 AA-CTGAGGGTAAAACGATAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* *
19329 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
19356 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
19383 AATCGATGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
19410 AA-CTGAGGGTAAAACAGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
*
19437 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * * *
19464 AA-CTTAGGGTAAAACGATAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
19491 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
19518 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
19545 AATC
1 AATC
19549 AGGAGTACTT
Statistics
Matches: 371, Mismatches: 55, Indels: 20
0.83 0.12 0.04
Matches are distributed among these distances:
26 5 0.01
27 361 0.97
28 5 0.01
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:26245 original size:16 final size:14
Alignment explanation
Indices: 26214--26241 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
26204 TTTTTCGTGC
26214 TTATTATGTGTGAA
1 TTATTATGTGTGAA
26228 TTATTATGTGTGAA
1 TTATTATGTGTGAA
26242 AATTTCGTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (14 bp):
TTATTATGTGTGAA
Found at i:27477 original size:43 final size:42
Alignment explanation
Indices: 27360--27482 Score: 115
Period size: 43 Copynumber: 2.9 Consensus size: 42
27350 GAGTTATGAT
* *
27360 TTACATGTAAGACCACGTCTGGGATGTTGGCATCGTATCTGA
1 TTACATGTAAGACCACGTCTGGGACGTTGGCATCGTATCTCA
*** * * *
27402 TTTTGTGTAAGACC-CTGTATGGGACAG-AGGCATCGATATTTCA
1 TTACATGTAAGACCAC-GTCTGGGAC-GTTGGCATCG-TATCTCA
* *
27445 TTACATGTAAGACCACGTCTAGGACGTTGGCATTGTAT
1 TTACATGTAAGACCACGTCTGGGACGTTGGCATCGTAT
27483 GAGATTTTTG
Statistics
Matches: 61, Mismatches: 15, Indels: 10
0.71 0.17 0.12
Matches are distributed among these distances:
41 1 0.02
42 29 0.48
43 30 0.49
44 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
TTACATGTAAGACCACGTCTGGGACGTTGGCATCGTATCTCA
Found at i:39471 original size:26 final size:26
Alignment explanation
Indices: 39435--39487 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
39425 ACATCGTCCA
39435 AGGTAAGTTTATAAGCAAATAGACAT
1 AGGTAAGTTTATAAGCAAATAGACAT
39461 AGGTAAGTTTATAAGCAAATAGACAT
1 AGGTAAGTTTATAAGCAAATAGACAT
39487 A
1 A
39488 CTTAATTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.47, C:0.08, G:0.19, T:0.26
Consensus pattern (26 bp):
AGGTAAGTTTATAAGCAAATAGACAT
Found at i:39497 original size:26 final size:26
Alignment explanation
Indices: 39437--39497 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
39427 ATCGTCCAAG
*
39437 GTAAGTTTATAAGCAAATAGACATAG
1 GTAAGTTTATAAGCAAATAGACATAC
39463 GTAAGTTTATAAGCAAATAGACATAC
1 GTAAGTTTATAAGCAAATAGACATAC
* *
39489 TTAATTTTA
1 GTAAGTTTA
39498 ATTAAATTCA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.44, C:0.08, G:0.15, T:0.33
Consensus pattern (26 bp):
GTAAGTTTATAAGCAAATAGACATAC
Found at i:41973 original size:17 final size:17
Alignment explanation
Indices: 41926--41974 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
41916 AGGGTTAGAG
41926 TTTTTCTTTTC-TTTTC
1 TTTTTCTTTTCATTTTC
*
41942 TTTTCCCTTTT-ATTTTC
1 TTTT-TCTTTTCATTTTC
*
41959 TTTTTTTTTTCATTTT
1 TTTTTCTTTTCATTTT
41975 TAGTTTAGGT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
16 8 0.30
17 19 0.70
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.80
Consensus pattern (17 bp):
TTTTTCTTTTCATTTTC
Found at i:41974 original size:22 final size:22
Alignment explanation
Indices: 41927--41974 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
41917 GGGTTAGAGT
* *
41927 TTTTCTTTTCTTTTCTTTTCCC
1 TTTTATTTTCTTTTCTTTTCCA
* *
41949 TTTTATTTTCTTTTTTTTTTCA
1 TTTTATTTTCTTTTCTTTTCCA
41971 TTTT
1 TTTT
41975 TAGTTTAGGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.79
Consensus pattern (22 bp):
TTTTATTTTCTTTTCTTTTCCA
Found at i:42429 original size:30 final size:30
Alignment explanation
Indices: 42395--42457 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
42385 TGTGACCGAA
* * * *
42395 AGGTAATTTCTATGCCTATGTGAGACCAAG
1 AGGTAATCTATATGACTAGGTGAGACCAAG
42425 AGGTAATCTATATGACTAGGTGAGACCAAG
1 AGGTAATCTATATGACTAGGTGAGACCAAG
42455 AGG
1 AGG
42458 ATGTTCCTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.25
Consensus pattern (30 bp):
AGGTAATCTATATGACTAGGTGAGACCAAG
Found at i:45763 original size:29 final size:29
Alignment explanation
Indices: 45701--45813 Score: 158
Period size: 28 Copynumber: 4.0 Consensus size: 29
45691 ACATACCTGT
* * *
45701 ATATGGCCCACTAGGCCC-AATCTCTTTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
* *
45729 ATATGGCTCATGAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
*
45758 AAATGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
45787 ATAT-GCCCATTAGGCCCAAATCACATT
1 ATATGGCCCATTAGGCCCAAATCACATT
45814 TACAGTCATG
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
28 38 0.51
29 37 0.49
ACGTcount: A:0.30, C:0.31, G:0.14, T:0.25
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATTC
Found at i:45764 original size:57 final size:57
Alignment explanation
Indices: 45703--45813 Score: 161
Period size: 57 Copynumber: 1.9 Consensus size: 57
45693 ATACCTGTAT
* * *
45703 ATGGCCCACTAGGCCC-AATCTCTTTCATATGGCTCATGAGGCCCAAATCACATTCAA
1 ATGGCCCACTAGGCCCAAATCACATTCATAT-GCCCATGAGGCCCAAATCACATTCAA
* *
45760 ATGGCCCATTAGGCCCAAATCACATTCATATGCCCATTAGGCCCAAATCACATT
1 ATGGCCCACTAGGCCCAAATCACATTCATATGCCCATGAGGCCCAAATCACATT
45814 TACAGTCATG
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
57 36 0.75
58 12 0.25
ACGTcount: A:0.30, C:0.32, G:0.14, T:0.24
Consensus pattern (57 bp):
ATGGCCCACTAGGCCCAAATCACATTCATATGCCCATGAGGCCCAAATCACATTCAA
Found at i:46057 original size:8 final size:8
Alignment explanation
Indices: 46029--46075 Score: 51
Period size: 8 Copynumber: 6.0 Consensus size: 8
46019 CATAGCCAAA
46029 CTTTT-GG
1 CTTTTCGG
*
46036 CTTTTCGA
1 CTTTTCGG
* *
46044 CATTTCAG
1 CTTTTCGG
46052 CTTTTCGG
1 CTTTTCGG
*
46060 CATTTCGG
1 CTTTTCGG
46068 CTTTTCGG
1 CTTTTCGG
46076 GATTTGCAGA
Statistics
Matches: 31, Mismatches: 8, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
7 5 0.16
8 26 0.84
ACGTcount: A:0.09, C:0.23, G:0.21, T:0.47
Consensus pattern (8 bp):
CTTTTCGG
Found at i:46075 original size:16 final size:16
Alignment explanation
Indices: 46034--46080 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
46024 CCAAACTTTT
*
46034 GGCTTTTCGACATTTC
1 GGCTTTTCGGCATTTC
*
46050 AGCTTTTCGGCATTTC
1 GGCTTTTCGGCATTTC
*
46066 GGCTTTTCGGGATTT
1 GGCTTTTCGGCATTT
46081 GCAGATCTAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.11, C:0.21, G:0.23, T:0.45
Consensus pattern (16 bp):
GGCTTTTCGGCATTTC
Found at i:46873 original size:13 final size:14
Alignment explanation
Indices: 46855--46884 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
46845 ATATATATAC
46855 TAAATAAATAA-AA
1 TAAATAAATAATAA
46868 TAAATAAATAATAA
1 TAAATAAATAATAA
46882 TAA
1 TAA
46885 CCTACACTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (14 bp):
TAAATAAATAATAA
Found at i:54553 original size:27 final size:27
Alignment explanation
Indices: 54513--54621 Score: 123
Period size: 27 Copynumber: 4.0 Consensus size: 27
54503 GGAGGAAGTG
*
54513 TTCTGGTGGCTATGTCACAAATATCTGT
1 TTCTGGTGGCTATGCCAC-AATATCTGT
*
54541 TTCTGGT-GTTATGCCACAAATATCTG-
1 TTCTGGTGGCTATGCCAC-AATATCTGT
*
54567 TTCTGGTGGCTCTGCCACAATATCTGT
1 TTCTGGTGGCTATGCCACAATATCTGT
* * * *
54594 ATCTGGTGACTCTGTCACAATATCTGT
1 TTCTGGTGGCTATGCCACAATATCTGT
54621 T
1 T
54622 GACTGATCGA
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
26 15 0.21
27 49 0.69
28 7 0.10
ACGTcount: A:0.20, C:0.21, G:0.20, T:0.39
Consensus pattern (27 bp):
TTCTGGTGGCTATGCCACAATATCTGT
Found at i:54616 original size:53 final size:54
Alignment explanation
Indices: 54511--54621 Score: 145
Period size: 53 Copynumber: 2.1 Consensus size: 54
54501 ATGGAGGAAG
* * *
54511 TGTTCTGGTGGCTATGTCACAAATATCTGTTTCTGGTGTTATGCCACAAATATC
1 TGTTCTGGTGGCTATGCCACAAATATCTGTATCTGGTGCTATGCCACAAATATC
* * *
54565 TGTTCTGGTGGCTCTGCCAC-AATATCTGTATCTGGTGACTCTGTCAC-AATATC
1 TGTTCTGGTGGCTATGCCACAAATATCTGTATCTGGTG-CTATGCCACAAATATC
54618 TGTT
1 TGTT
54622 GACTGATCGA
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
53 26 0.52
54 24 0.48
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.39
Consensus pattern (54 bp):
TGTTCTGGTGGCTATGCCACAAATATCTGTATCTGGTGCTATGCCACAAATATC
Found at i:54945 original size:25 final size:25
Alignment explanation
Indices: 54907--54973 Score: 64
Period size: 27 Copynumber: 2.6 Consensus size: 25
54897 TACGGCTTTG
*
54907 TGCCACATATTCTGTT-AAGTGGCTT
1 TGCCACATA-TCTGTTCAAGTGGCTC
**
54932 TGCCACATTATCTGATTCTGGTGGCTC
1 TGCCACA-TATCTG-TTCAAGTGGCTC
54959 TGCCACAATATCTGT
1 TGCCAC-ATATCTGT
54974 ATCTGGTGAC
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
25 11 0.31
26 5 0.14
27 18 0.51
28 1 0.03
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.37
Consensus pattern (25 bp):
TGCCACATATCTGTTCAAGTGGCTC
Found at i:54955 original size:27 final size:27
Alignment explanation
Indices: 54925--54981 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
54915 ATTCTGTTAA
* *
54925 GTGGCTTTGCCACATTATCTG-ATTCTG
1 GTGGCTCTGCCACAATATCTGTA-TCTG
54952 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
54979 GTG
1 GTG
54982 ACTTCGTCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 26 0.96
28 1 0.04
ACGTcount: A:0.16, C:0.23, G:0.25, T:0.37
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTATCTG
Found at i:55187 original size:12 final size:12
Alignment explanation
Indices: 55170--55200 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
55160 TTCTGTCACC
*
55170 TGATTCTGATTT
1 TGATTCTCATTT
55182 TGATTCTCATTT
1 TGATTCTCATTT
55194 TGATTCT
1 TGATTCT
55201 AATTCTGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.13, G:0.13, T:0.58
Consensus pattern (12 bp):
TGATTCTCATTT
Found at i:55188 original size:31 final size:31
Alignment explanation
Indices: 55116--55180 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
55106 TTGCATTCAC
* * *
55116 ATTCTAATTTTGATTCTGTTACCTGATACTG
1 ATTCTAATTCTAATTCTGTCACCTGATACTG
*
55147 ATTCTAATTCTAATTCTGTCACCTGATTCTG
1 ATTCTAATTCTAATTCTGTCACCTGATACTG
55178 ATT
1 ATT
55181 TTGATTCTCA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.18, G:0.11, T:0.48
Consensus pattern (31 bp):
ATTCTAATTCTAATTCTGTCACCTGATACTG
Found at i:59432 original size:68 final size:67
Alignment explanation
Indices: 59360--59509 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
59350 CATCATGTGT
* * * *
59360 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
59422 ATGTAG
62 ATGTAG
** * *
59428 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
59493 AG
66 AG
59495 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
59510 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:59465 original size:64 final size:64
Alignment explanation
Indices: 59384--59567 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
59374 AGACATTATG
* *
59384 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
59448 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
59513 AA
63 AA
* * * *
59515 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
59568 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:71377 original size:46 final size:46
Alignment explanation
Indices: 71305--71394 Score: 153
Period size: 46 Copynumber: 2.0 Consensus size: 46
71295 GGCTTGGGTT
*
71305 AAATTCATTTTACGAGCCTAGAGACTAAATCGTAAAATATTGAATG
1 AAATTCATTTTACGAGCCTAGAGACTAAATCATAAAATATTGAATG
* *
71351 AAATTCATTTTACGAGCCTAGGGACTAAATCATAGAATATTGAA
1 AAATTCATTTTACGAGCCTAGAGACTAAATCATAAAATATTGAA
71395 ATATTAGGGG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.41, C:0.13, G:0.16, T:0.30
Consensus pattern (46 bp):
AAATTCATTTTACGAGCCTAGAGACTAAATCATAAAATATTGAATG
Found at i:71494 original size:19 final size:19
Alignment explanation
Indices: 71470--71507 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
71460 ATTAAATAAG
71470 TTAAATTTGACATTATAGA
1 TTAAATTTGACATTATAGA
71489 TTAAATTTGACATTATAGA
1 TTAAATTTGACATTATAGA
71508 ACAAGAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.42
Consensus pattern (19 bp):
TTAAATTTGACATTATAGA
Found at i:81835 original size:79 final size:78
Alignment explanation
Indices: 81694--81915 Score: 261
Period size: 79 Copynumber: 2.8 Consensus size: 78
81684 TATTCGAATG
* * * *
81694 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGG-TTAAG-TCCGAAGGC
81759 ATTTGTGCGAGTTACT
63 ATTTGTGCGAGTTACT
* *
81775 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGAGTTAAGTCCCGAAGGC
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG-GTTAAGT-CCGAAGGC
81838 ATTTGTGCGAGTTACT
63 ATTTGTGCGAGTTACT
* * * *
81854 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCCGGTTAAATTCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGTT-AAGTCCGAAGG
81916 TATGTGATTC
Statistics
Matches: 122, Mismatches: 12, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
78 1 0.01
79 62 0.51
80 47 0.39
81 12 0.10
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGTTAAGTCCGAAGGCATT
TGTGCGAGTTACT
Found at i:81846 original size:40 final size:39
Alignment explanation
Indices: 81696--81915 Score: 214
Period size: 40 Copynumber: 5.5 Consensus size: 39
81686 TTCGAATGAT
* * * *
81696 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAT
1 ATCC-GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
81737 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGG-CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* *
81777 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA
1 ATCC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
81816 ATCCGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCG-GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* * *
81857 A-CCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTAT
1 ATCC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAA
* * *
81896 ATCCGGTTAAATTCCGAAGG
1 ATCCGGCTAAGTCCCGAAGG
81916 TATGTGATTC
Statistics
Matches: 152, Mismatches: 17, Indels: 22
0.80 0.09 0.12
Matches are distributed among these distances:
38 1 0.01
39 48 0.32
40 73 0.48
41 29 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
ATCCGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:90008 original size:79 final size:79
Alignment explanation
Indices: 89868--90089 Score: 263
Period size: 79 Copynumber: 2.8 Consensus size: 79
89858 TATTCGAATG
* * * **
89868 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAG-TCCGAAGGC
89933 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* *
89949 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGC
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGT-CCGAAGGC
90012 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* * * *
90028 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTT-AAGTCCGAAGG
90090 TATGTGATTC
Statistics
Matches: 122, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
78 1 0.01
79 64 0.52
80 45 0.37
81 12 0.10
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:90070 original size:40 final size:40
Alignment explanation
Indices: 89868--90075 Score: 262
Period size: 40 Copynumber: 5.2 Consensus size: 40
89858 TATTCGAATG
* * *
89868 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
*
89909 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
*
89949 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
89988 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
90028 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
90068 ATATCCGG
1 ATATCCGG
90076 TTAAATTCCG
Statistics
Matches: 147, Mismatches: 14, Indels: 13
0.84 0.08 0.07
Matches are distributed among these distances:
39 37 0.25
40 81 0.55
41 28 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:91552 original size:49 final size:49
Alignment explanation
Indices: 91401--91671 Score: 419
Period size: 49 Copynumber: 5.5 Consensus size: 49
91391 GATTCTATGT
*
91401 TGATGAATGTTGAAGGTGTTTATATATATG-GATAAGGGCCTAATGGCCGATTG
1 TGATGAATG-TGAAAGTG--TATATATATGTGATAA-GGCCTAATGGCCGA-TG
91454 TGATGAATGTGAAAGTGTATATATATTGTGATAAGGCCTAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATA-TGTGATAAGGCCTAATGGCCGATG
91504 TGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
91553 TGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
91600 TGATGAAATGTTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGAT-
1 TGATG-AATG-TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
91648 TGATGAATGTGAAAGTGTATATAT
1 TGATGAATGTGAAAGTGTATATAT
91672 GTGCACAGGG
Statistics
Matches: 211, Mismatches: 1, Indels: 17
0.92 0.00 0.07
Matches are distributed among these distances:
46 8 0.04
47 39 0.18
48 14 0.07
49 78 0.37
50 35 0.17
51 16 0.08
52 12 0.06
53 9 0.04
ACGTcount: A:0.32, C:0.07, G:0.28, T:0.32
Consensus pattern (49 bp):
TGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
Found at i:91596 original size:96 final size:97
Alignment explanation
Indices: 91401--91674 Score: 432
Period size: 96 Copynumber: 2.8 Consensus size: 97
91391 GATTCTATGT
*
91401 TGATGAATGTTGAAGGTGTTTATATATATG-GATAAGGGCCTAATGGCCGATTGTGATGAATGTG
1 TGATGAATGTTGAAAGTG--TATATATATGTGATAA-GGCCTAATGGCCGA-TGTGATGAATGTG
91465 AAAGTGTATATATATTGTGATAAGGCCTAATGGCCGATG
62 AAAGTG--TATATA-TGTGATAAGGCCTAATGGCCGATG
91504 TGATGAATG-TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 TGATGAATGTTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
91568 TGTATATATGTGATAAGGCCTAATGGCCGATG
66 TGTATATATGTGATAAGGCCTAATGGCCGATG
91600 TGATGAAATGTTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGAT-TGATGAATGTGAAA
1 TGATG-AATGTTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
91662 GTGTATATATGTG
65 GTGTATATATGTG
91675 CACAGGGTGC
Statistics
Matches: 167, Mismatches: 1, Indels: 14
0.92 0.01 0.08
Matches are distributed among these distances:
95 27 0.16
96 58 0.35
97 10 0.06
98 8 0.05
99 19 0.11
100 24 0.14
101 5 0.03
102 7 0.04
103 9 0.05
ACGTcount: A:0.32, C:0.07, G:0.29, T:0.32
Consensus pattern (97 bp):
TGATGAATGTTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCGATG
Found at i:91724 original size:96 final size:95
Alignment explanation
Indices: 91401--91730 Score: 364
Period size: 96 Copynumber: 3.3 Consensus size: 95
91391 GATTCTATGT
*
91401 TGATGAATGTTGAAGGTGTTTATATATATG-GATAAGGGCCTAATGGCCGATTGTGATGAATGTG
1 TGATGAATG-TGAAAGTG--TAT-TATATGTGATAA-GGCCTAATGGCCGA-TGTGATGAATGTG
* * *
91465 AAAGTGTATATATATTGTGATAAGGCCTAATGGCCGATG
60 AAAGTG--TATATA-TGTGACAAGGCCTAATGGCCAACG
91504 TGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 TGATGAATGTGAAAGTGTAT-TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
* * *
91569 GTATATATGTGATAAGGCCTAATGGCCGATG
65 GTATATATGTGACAAGGCCTAATGGCCAACG
91600 TGATGAAATGTTGAAAGTGTA-TATATGTGATAAGGCCTAATGGCCGAT-TGATGAATGTGAAAG
1 TGATG-AATG-TGAAAGTGTATTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* **
91663 TGTATATATGTGCACAGGGTGCC-GGT-GCCAACG
64 TGTATATATGTG-ACA-AG-GCCTAATGGCCAACG
* *
91696 TGATGGATGTGAAAGTTGTATTAAATGTGGATAAG
1 TGATGAATGTGAAAG-TGTATTATATGT-GATAAG
91731 TCCCGAAGGC
Statistics
Matches: 209, Mismatches: 9, Indels: 24
0.86 0.04 0.10
Matches are distributed among these distances:
94 6 0.03
95 34 0.16
96 74 0.35
97 18 0.09
98 13 0.06
99 19 0.09
100 24 0.11
101 5 0.02
102 7 0.03
103 9 0.04
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.31
Consensus pattern (95 bp):
TGATGAATGTGAAAGTGTATTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATGTGACAAGGCCTAATGGCCAACG
Found at i:91900 original size:38 final size:37
Alignment explanation
Indices: 91849--91966 Score: 155
Period size: 38 Copynumber: 3.1 Consensus size: 37
91839 CCGAGCTCTA
* *
91849 AAGACCCAATGACTACATGTGGGGATTTTGTACCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGT-CCGGGT
*
91887 AAGACCCGATGACTACGTGGTGGGGATTTTGTCCAGGT
1 AAGACCCGATGACTACGT-GTGGGGATTTTGTCCGGGT
* * * *
91925 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
91962 AAGAC
1 AAGAC
91967 TTCGTATAAG
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
37 21 0.30
38 37 0.52
39 13 0.18
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Found at i:94883 original size:49 final size:49
Alignment explanation
Indices: 94830--95152 Score: 527
Period size: 47 Copynumber: 6.8 Consensus size: 49
94820 TTAGGATTCT
94830 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
94879 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
94928 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
94977 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
95024 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* * * * *
95071 ATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* *
95118 ACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
95153 TCCCGAAGGG
Statistics
Matches: 263, Mismatches: 9, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
47 142 0.54
48 1 0.00
49 120 0.46
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
Found at i:95319 original size:36 final size:37
Alignment explanation
Indices: 95271--95383 Score: 142
Period size: 35 Copynumber: 3.1 Consensus size: 37
95261 CCGAGCTCTA
* *
95271 AAGACCCAATGACTACATGTGGGGATTTTGTCC-GGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCAGGT
95307 AAGACCCGATGACTACGTGT-GGGA-TTTGTCCAGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCAGGT
* * * * *
95342 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCAGGT
95379 AAGAC
1 AAGAC
95384 TTCGTAATAA
Statistics
Matches: 67, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
34 7 0.10
35 25 0.37
36 21 0.31
37 14 0.21
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCAGGT
Found at i:101943 original size:39 final size:39
Alignment explanation
Indices: 101911--102019 Score: 166
Period size: 39 Copynumber: 2.8 Consensus size: 39
101901 TAAAAACATG
* * * *
101911 TATTAAAGATGTCCAAACTATGACATAATT-AAAACTCT
1 TATTAATGATGTTCAAATTATGACATAATTAAAAACTCA
*
101949 TATTAATGATGTTCAGATTATGACATAATTAAAAACTCA
1 TATTAATGATGTTCAAATTATGACATAATTAAAAACTCA
101988 TATTAATGATGTTCAAATTATGACATAATTAA
1 TATTAATGATGTTCAAATTATGACATAATTAA
102020 GGACTCAAAC
Statistics
Matches: 64, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
38 26 0.41
39 38 0.59
ACGTcount: A:0.44, C:0.11, G:0.09, T:0.36
Consensus pattern (39 bp):
TATTAATGATGTTCAAATTATGACATAATTAAAAACTCA
Found at i:109299 original size:13 final size:13
Alignment explanation
Indices: 109281--109306 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
109271 GTCAAACTGT
109281 TGTTAAGAATGCC
1 TGTTAAGAATGCC
109294 TGTTAAGAATGCC
1 TGTTAAGAATGCC
109307 ACTACAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
TGTTAAGAATGCC
Found at i:118272 original size:25 final size:25
Alignment explanation
Indices: 118238--118287 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
118228 ATACATCGAA
118238 TTCATTACTCATGAATTTTGCGTAC
1 TTCATTACTCATGAATTTTGCGTAC
118263 TTCATTACTCATGAATTTTGCGTAC
1 TTCATTACTCATGAATTTTGCGTAC
118288 ATACTTGTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.20, G:0.12, T:0.44
Consensus pattern (25 bp):
TTCATTACTCATGAATTTTGCGTAC
Found at i:119927 original size:41 final size:43
Alignment explanation
Indices: 119814--119958 Score: 127
Period size: 41 Copynumber: 3.4 Consensus size: 43
119804 TGTGTTCTCG
* * * *
119814 TGTAAGACCACGTCT-AGGACGTTGGCATCGATATATGTGGTTACA
1 TGTAAGACCATGTCTGA-GACATCGGCATCG--ATATGTGATTACA
* *
119859 TGTAAGACCATGTCTGAGACATCGGCATCG-TATTTGATT-CG
1 TGTAAGACCATGTCTGAGACATCGGCATCGATATGTGATTACA
* * * *
119900 TGTAAGACCCTGTTTGGGACAGT-GGCATGGATATGTGATTACA
1 TGTAAGACCATGTCTGAGACA-TCGGCATCGATATGTGATTACA
*
119943 TGTAAGACCACGTCTG
1 TGTAAGACCATGTCTG
119959 GGACGTTGGC
Statistics
Matches: 81, Mismatches: 15, Indels: 10
0.76 0.14 0.09
Matches are distributed among these distances:
41 25 0.31
42 16 0.20
43 14 0.17
45 25 0.31
46 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (43 bp):
TGTAAGACCATGTCTGAGACATCGGCATCGATATGTGATTACA
Found at i:133750 original size:27 final size:27
Alignment explanation
Indices: 133716--133893 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
133706 TAAATTGTAC
133716 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
133743 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
133769 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
133797 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
133825 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
133852 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
133879 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
133894 GACTTAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:133830 original size:82 final size:81
Alignment explanation
Indices: 133717--133872 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
133707 AAATTGTACA
* *
133717 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
133781 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
133798 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
133863 TGCGAGTTGA
65 TGCGAATTGA
133873 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:133884 original size:82 final size:81
Alignment explanation
Indices: 133713--133893 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
133703 GGTTAAATTG
* *
133713 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
133778 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
133794 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
133858 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
133876 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
133894 GACTTAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:141565 original size:27 final size:27
Alignment explanation
Indices: 141531--141708 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
141521 TAAATTGTAC
141531 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
141558 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
141584 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
141612 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
141640 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
141667 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
141694 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
141709 GACTTAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:141645 original size:82 final size:81
Alignment explanation
Indices: 141532--141687 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
141522 AAATTGTACA
* *
141532 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
141596 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
141613 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
141678 TGCGAGTTGA
65 TGCGAATTGA
141688 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:141699 original size:82 final size:81
Alignment explanation
Indices: 141528--141708 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
141518 GGTTAAATTG
* *
141528 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
141593 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
141609 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
141673 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
141691 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
141709 GACTTAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:145987 original size:46 final size:47
Alignment explanation
Indices: 145617--146323 Score: 1005
Period size: 47 Copynumber: 15.4 Consensus size: 47
145607 CAGCCAAGAC
*
145617 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
145664 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
145711 AGTGTATATATATGTGA-AAGGCCTAATGGCCGATGTGATG-ATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
145758 AGTGT-TATATGTGCTAAGGCCTAATAGCCGATGTGATG-ATGTGGA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
145803 AGTGTA-ATATGTGATAAGG-CTAAT-G-CGAT-TGATG-ATGTG-A
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
145843 AGTGTATA-ATGTGAT-AGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
145888 AGTGTATATATATGTGAT-AGGCCT-AT-G-CGATGTGAAG-ATGTG-A
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
145931 AGTGTATATATATGTG-TAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
145979 AGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
146025 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
146072 AGT-TGATATATAGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGT-ATATAT-GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
146120 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT-AATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
146166 AGTGTATATATGTAATATGGCCTAAT-GCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
146212 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * *
146259 AGAGTATATATGTGACAGGGCCGAGTGGCCAACGTGA-GGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
146305 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
146324 TCCCGAAGGG
Statistics
Matches: 609, Mismatches: 24, Indels: 55
0.89 0.03 0.08
Matches are distributed among these distances:
39 3 0.00
40 19 0.03
41 12 0.02
42 9 0.01
43 29 0.05
44 25 0.04
45 72 0.12
46 153 0.25
47 189 0.31
48 86 0.14
49 12 0.02
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:146318 original size:93 final size:92
Alignment explanation
Indices: 145617--146323 Score: 953
Period size: 93 Copynumber: 7.7 Consensus size: 92
145607 CAGCCAAGAC
*
145617 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGA-GGATGTGAAAGTGTATATATGTGATAA
145682 GGCCTAATGGCCGATGTGATGAATGTGAA
64 GGCCTAATGGCCGATGTGATGAATGTGAA
* *
145711 AGTGTATATATATGTGA-AAGGCCTAATGGCCGATGTGATGATGTGAAAGTGT-TATATGTGCTA
1 AGTG--TATATATGTGATAAGGCCTAAT-GCCGATGTGAGGATGTGAAAGTGTATATATGTGATA
* *
145774 AGGCCTAATAGCCGATGTGATG-ATGTGGA
63 AGGCCTAATGGCCGATGTGATGAATGTGAA
*
145803 AGTGTA-ATATGTGATAAGG-CTAATG-CGAT-TGATGATGTG-AAGTGTATA-ATGTGAT-AGG
1 AGTGTATATATGTGATAAGGCCTAATGCCGATGTGAGGATGTGAAAGTGTATATATGTGATAAGG
145861 CCTAATGGCCGATGTGATGAATGTGAA
66 CCTAATGGCCGATGTGATGAATGTGAA
*
145888 AGTGTATATATATGTGAT-AGGCCT-ATG-CGATGTGAAGATGTG-AAGTGTATATATATGTG-T
1 AGTG--TATATATGTGATAAGGCCTAATGCCGATGTGAGGATGTGAAAGTG--TATATATGTGAT
*
145948 AAGGCCTAATAGCCGATGTGATGAATGTGAA
62 AAGGCCTAATGGCCGATGTGATGAATGTGAA
*
145979 AGTGTATATATGTGATAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 AGTGTATATATGTGATAAGGCCTAATGCCGATGTGA-GGATGTGAAAGTGTATATATGTGATAAG
146044 GCCTAATGGCCGATGTGATGAATGTGAA
65 GCCTAATGGCCGATGTGATGAATGTGAA
*
146072 AGT-TGATATATAGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AGTGT-ATATAT-GTGATAAGGCCTAAT-GCCGATGTGA-GGATGTGAAAGTGTATATATGTGAT
146136 AAGGCCTAATGGCCGATGTGAT-AATGTGAA
62 AAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
146166 AGTGTATATATGTAATATGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 AGTGTATATATGTGATAAGGCCTAATGCCGATGTGA-GGATGTGAAAGTGTATATATGTGATAAG
146231 GCCTAATGGCCGATGTGATGAATGTGAA
65 GCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * * *
146259 AGAGTATATATGTGACAGGGCCGAGTGGCCAACGTGAGGATGTGAAAGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGAGGATGTGAAAGTGTATATATGTGATAAG
146324 TCCCGAAGGG
Statistics
Matches: 560, Mismatches: 27, Indels: 53
0.88 0.04 0.08
Matches are distributed among these distances:
84 21 0.04
85 22 0.04
86 12 0.02
87 16 0.03
88 26 0.05
89 25 0.04
90 17 0.03
91 41 0.07
92 87 0.16
93 142 0.25
94 61 0.11
95 79 0.14
96 11 0.02
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (92 bp):
AGTGTATATATGTGATAAGGCCTAATGCCGATGTGAGGATGTGAAAGTGTATATATGTGATAAGG
CCTAATGGCCGATGTGATGAATGTGAA
Found at i:146497 original size:37 final size:37
Alignment explanation
Indices: 146442--146519 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
146432 CCGAGCTCTA
* *
146442 AAGA-CCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
146478 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
146515 AAGAC
1 AAGAC
146520 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
36 4 0.11
37 32 0.86
38 1 0.03
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Done.