genome.fa.s182.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1560
Parameters: 2 7 7 80 10 50 1000
Length:  123219

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6565--7048	47	10.3	48	91	4	733	31	8	30	29	1.87
6563--7048	93	5.2	94	89	7	722	31	8	30	29	1.87
6563--7046	142	3.4	142	92	4	770	31	8	30	29	1.87
7167--7244	36	2.1	37	90	2	122	24	19	32	24	1.98
15351--15396	17	2.8	18	84	15	64	28	41	30	0	1.56
25365--25391	13	2.1	13	100	0	54	77	7	7	7	1.12
25579--25639	14	4.4	14	82	13	72	70	0	29	0	0.88
25611--25654	3	16.0	3	82	17	60	68	0	31	0	0.90
25589--25654	8	8.6	8	80	12	68	68	0	31	0	0.90
25596--25653	19	3.1	18	82	9	71	68	0	31	0	0.89
25792--25824	11	3.0	11	91	8	50	33	0	12	54	1.37
26089--27104	138	7.4	137	91	3	1614	56	7	8	27	1.57
29153--29293	72	2.0	72	87	2	203	22	27	17	32	1.96
33756--33807	25	2.1	25	100	0	104	40	11	15	32	1.83
35859--35901	19	2.3	19	84	8	52	79	6	6	6	1.07
36073--36131	3	19.7	3	76	13	59	67	0	32	0	0.91
36072--36124	18	3.0	18	86	13	83	66	0	33	0	0.92
36075--36131	16	3.4	17	81	13	73	68	0	31	0	0.90
36068--36131	19	3.4	19	79	14	78	67	0	32	0	0.91
36162--36215	3	19.0	3	77	7	51	72	0	27	0	0.85
36161--36242	17	4.7	18	69	14	64	68	0	31	0	0.90
36173--36242	25	2.8	24	75	16	70	67	0	32	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36164--36242	12	6.2	13	75	12	58	69	0	30	0	0.89
36712--36973	131	2.0	128	82	7	312	54	7	8	29	1.57
36699--37266	144	4.1	133	75	15	459	55	6	8	29	1.54
36835--37276	144	3.0	143	82	9	595	56	6	8	29	1.53
36685--37276	293	2.1	281	87	5	839	56	6	8	29	1.53
37141--37331	90	2.1	90	78	4	197	52	6	8	31	1.59
37359--37394	13	2.8	13	87	4	56	75	2	0	22	0.94
37359--37421	17	4.4	14	72	20	51	69	3	1	25	1.12
37037--37519	243	2.0	233	89	5	736	53	7	8	30	1.58
37334--37831	144	3.4	145	87	5	689	57	7	7	28	1.52
37334--37831	145	3.4	146	88	5	693	57	7	7	28	1.52
45069--45134	26	2.7	26	88	6	93	46	9	4	39	1.56
45227--45261	17	2.1	17	88	0	52	0	22	0	77	0.78
45438--45481	19	2.4	19	92	3	72	4	9	9	77	1.12
50713--50747	16	2.2	16	89	0	52	77	0	0	22	0.78
57554--57598	22	2.0	22	83	8	56	26	11	17	44	1.82
61961--62132	86	2.0	85	90	3	211	46	5	12	35	1.65
62216--62269	17	3.3	17	69	10	58	24	11	9	55	1.64
66935--66967	15	2.1	16	88	5	50	57	3	6	33	1.38
70334--70367	17	2.0	17	94	0	59	44	50	0	5	1.26
74963--74996	17	2.0	17	94	0	59	44	50	0	5	1.26
75150--75188	17	2.4	17	86	4	53	28	7	10	53	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76873--76909	13	2.8	13	91	0	56	40	2	13	43	1.58
89225--89252	13	2.2	13	100	0	56	28	7	14	50	1.69
90362--90409	17	2.9	16	84	12	62	47	4	6	41	1.48
90368--90409	15	2.6	17	85	11	61	50	4	7	38	1.51
92597--92630	17	2.0	17	88	11	52	11	26	41	20	1.87
94784--94833	24	2.1	24	100	0	100	44	28	8	20	1.79
97765--97801	18	2.1	18	89	0	56	51	2	40	5	1.39
98350--98395	19	2.4	19	100	0	92	43	0	8	47	1.34
100585--100682	19	5.2	19	92	7	164	37	10	16	35	1.82
100575--100682	36	2.9	35	78	20	112	37	10	15	36	1.82
111032--111139	26	4.2	26	91	0	180	33	7	23	36	1.83
114944--114973	3	10.0	3	92	0	51	63	0	0	36	0.95
119599--119636	18	2.1	19	90	5	60	52	5	21	21	1.66
123031--123141	41	2.6	44	88	5	167	24	21	30	23	1.99

Tables:   1

The End!