genome.fa.s183.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3360
Parameters: 2 7 7 80 10 50 1000
Length:  91565

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2406--2473	26	2.5	26	80	7	64	30	10	30	27	1.90
8172--8355	40	4.6	39	77	8	165	27	27	21	23	1.99
8175--8355	80	2.3	80	83	9	210	27	27	21	23	1.99
16663--16810	43	3.5	43	76	9	133	27	20	25	26	1.99
16698--16800	42	2.4	42	79	9	102	29	18	23	29	1.98
27463--27501	18	2.2	18	90	0	60	41	15	10	33	1.81
39741--39800	30	2.0	30	86	0	84	31	26	5	36	1.78
48416--48441	12	2.2	12	100	0	52	53	7	0	38	1.30
52229--52404	46	3.8	45	77	12	196	22	20	28	28	1.99
53142--53242	49	2.1	50	96	3	188	36	7	19	35	1.81
55359--55406	14	3.4	15	86	11	66	10	14	12	62	1.54
57776--57949	45	3.8	45	79	11	194	21	20	29	28	1.98
57772--57941	92	1.8	92	92	2	288	21	21	30	27	1.98
59430--59598	55	3.1	54	85	2	232	23	23	18	34	1.96
59580--59700	47	2.6	47	93	0	188	26	23	12	37	1.91
62363--62441	37	2.1	37	88	0	113	26	30	18	24	1.98
62560--63066	47	10.7	47	94	1	847	29	29	8	31	1.87
62560--63045	190	2.6	190	94	1	843	29	29	8	32	1.87
62615--63066	237	1.9	235	96	0	789	30	29	8	32	1.87
83446--84233	47	16.6	47	91	2	1216	32	8	29	29	1.87
83446--84233	96	8.3	94	92	2	1216	32	8	29	29	1.87
83446--84233	143	5.5	143	93	0	1301	32	8	29	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86159--86363	27	7.6	27	85	3	250	30	27	14	26	1.95

Tables:   1

The End!