Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold3059
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38581
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Found at i:6930 original size:27 final size:27
Alignment explanation
Indices: 6900--7077 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
6890 ATATTGAGCC
* * *
6900 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
6927 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
6954 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
6982 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
7009 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
7036 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
7063 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
7078 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:6993 original size:55 final size:55
Alignment explanation
Indices: 6900--7077 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
6890 ATATTGAGCC
* * *
6900 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
6954 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
7009 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
7063 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
7078 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:7039 original size:82 final size:81
Alignment explanation
Indices: 6921--7076 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
6911 TGCTATACAA
* * *
6921 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
6986 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
7003 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
7067 CACTTAGTGC
65 CACTTAGTGC
7077 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:10061 original size:47 final size:47
Alignment explanation
Indices: 10008--10427 Score: 619
Period size: 47 Copynumber: 9.0 Consensus size: 47
9998 TTAGGATTTT
*
10008 ATGTGATGAATGTGAACATGCATATATGTGATGAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
10055 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
10102 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGG-CT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
10148 ATGTGATGAATGTGAACATGCATATATGTGATGAA-GCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGAT-AAGGCCGAATGGCCA
* *
10195 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
10242 AAGTGGTGAATGTGAACATGCATATATGTGATGAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
10289 ATGTGATAAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
10336 ATGTGATGAATGTGAGCATACATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
10383 ATGTGGTGAATATGAAAATGCATATATGCGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
10428 TAGTGTGAAA
Statistics
Matches: 335, Mismatches: 35, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
46 42 0.13
47 293 0.87
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.25
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:10482 original size:141 final size:138
Alignment explanation
Indices: 10007--10435 Score: 669
Period size: 140 Copynumber: 3.1 Consensus size: 138
9997 TTTAGGATTT
* *
10007 TATGTGATGAATGTGAACATGCATATATGTGATGAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATAAATGTGAGCATGCATATATGTGAT--GGCCGAATGGCCAATGTGATGAATGTGAGC
10072 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
64 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
10137 GCCGAATGGC
129 GCCGAATGGC
* *
10147 TATGTGATGAATGTGAACATGCATATATGTGATGAAGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATAAATGTGAGCATGCATATATGTGATG--GCCGAATGGCCAATGTGATGAATGTGAGC
* * *
10212 ATGCATATGTGTGATAAGGCCGAATGGCCAAAGTGGTGAATGTGAACATGCATATATGTGATGAG
64 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
10277 GCCGAATGGCC
129 GCCGAATGG-C
*
10288 AATGTGATAAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATAAATGTGAGCATGCATATATGTGAT--GGCCGAATGGCCAATGTGATGAATGTGAGC
* * * * *
10353 ATACATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAAAATGCATATATGCGGTAAA
64 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
10418 GCCGAATGGC
129 GCCGAATGGC
10428 TAGTGTGA
1 TA-TGTGA
10436 AATATGTAGG
Statistics
Matches: 268, Mismatches: 15, Indels: 11
0.91 0.05 0.04
Matches are distributed among these distances:
138 1 0.00
140 135 0.50
141 131 0.49
143 1 0.00
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (138 bp):
TATGTGATAAATGTGAGCATGCATATATGTGATGGCCGAATGGCCAATGTGATGAATGTGAGCAT
GCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAGGC
CGAATGGC
Found at i:10638 original size:37 final size:37
Alignment explanation
Indices: 10588--10696 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
10578 GGAAATATAT
*
10588 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
10625 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
10662 TCCGGGTAAGACCCAATAACTTCGTGTGGAGATTA
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTA
10697 CATCCGAGCT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:14396 original size:12 final size:12
Alignment explanation
Indices: 14379--14408 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
14369 AAGCACATAG
*
14379 CCGTGTCCTAGC
1 CCGTGTCCTACC
14391 CCGTGTCCTACC
1 CCGTGTCCTACC
14403 CCGTGT
1 CCGTGT
14409 AACTCCTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.43, G:0.23, T:0.27
Consensus pattern (12 bp):
CCGTGTCCTACC
Found at i:14854 original size:25 final size:24
Alignment explanation
Indices: 14826--14872 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
14816 TACCAACCAA
14826 TACCAATC-ATATCAATACCAAAATG
1 TACCAATCAAT-TC-ATACCAAAATG
*
14851 TACCATTCAATTCATACCAAAA
1 TACCAATCAATTCATACCAAAA
14873 ACTAATAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 9 0.45
25 9 0.45
26 2 0.10
ACGTcount: A:0.47, C:0.26, G:0.02, T:0.26
Consensus pattern (24 bp):
TACCAATCAATTCATACCAAAATG
Found at i:24563 original size:29 final size:28
Alignment explanation
Indices: 24506--24608 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 28
24496 TACATACATG
*
24506 CATATGGCCCACTAGGCCCAATCTTATT
1 CATATGGCCCACTAGGCCCATTCTTATT
* *
24534 CAAATGGCCCATCTA-GCCCAGTTCATATT
1 CATATGGCCCA-CTAGGCCCA-TTCTTATT
*
24563 CTTATGGCCCACTAGGCCCAATTCTTATT
1 CATATGGCCCACTAGGCCC-ATTCTTATT
* *
24592 CATATTGCCCATTAGGC
1 CATATGGCCCACTAGGC
24609 TCAAATCATA
Statistics
Matches: 62, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
28 18 0.29
29 43 0.69
30 1 0.02
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.30
Consensus pattern (28 bp):
CATATGGCCCACTAGGCCCATTCTTATT
Found at i:24618 original size:58 final size:57
Alignment explanation
Indices: 24508--24620 Score: 156
Period size: 58 Copynumber: 2.0 Consensus size: 57
24498 CATACATGCA
**
24508 TATGGCCCACTAGGCCCAATCTTATTCAAATGGCCCATCTAGCCCAGTTCATATTCT
1 TATGGCCCACTAGGCCCAATCTTATTCAAATGGCCCATCTAGCCCAAATCATATTCT
* * *
24565 TATGGCCCACTAGGCCCAATTCTTATTCATATTGCCCAT-TAGGCTCAAATCATATT
1 TATGGCCCACTAGGCCCAA-TCTTATTCAAATGGCCCATCTA-GCCCAAATCATATT
24621 ATATTCATGC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
57 21 0.43
58 28 0.57
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.32
Consensus pattern (57 bp):
TATGGCCCACTAGGCCCAATCTTATTCAAATGGCCCATCTAGCCCAAATCATATTCT
Found at i:24620 original size:29 final size:29
Alignment explanation
Indices: 24506--24625 Score: 102
Period size: 29 Copynumber: 4.2 Consensus size: 29
24496 TACATACATG
* *
24506 CATATGGCCCACTAGGCCC-AATCTTATT
1 CATATTGCCCACTAGGCCCAAATCATATT
* * **
24534 CAAATGGCCCATCTA-GCCCAGTTCATATT
1 CATATTGCCCA-CTAGGCCCAAATCATATT
* * * *
24563 CTTATGGCCCACTAGGCCCAATTCTTATT
1 CATATTGCCCACTAGGCCCAAATCATATT
* *
24592 CATATTGCCCATTAGGCTCAAATCATATT
1 CATATTGCCCACTAGGCCCAAATCATATT
24621 -ATATT
1 CATATT
24626 CATGCTCACA
Statistics
Matches: 75, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
28 22 0.29
29 53 0.71
ACGTcount: A:0.27, C:0.28, G:0.12, T:0.33
Consensus pattern (29 bp):
CATATTGCCCACTAGGCCCAAATCATATT
Found at i:24727 original size:19 final size:19
Alignment explanation
Indices: 24703--24739 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
24693 AGCCAATCAG
*
24703 GCCCATTTAGCCCATTCTA
1 GCCCATTTAGCCAATTCTA
*
24722 GCCCATTTGGCCAATTCT
1 GCCCATTTAGCCAATTCT
24740 CAACCTAAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.19, C:0.35, G:0.14, T:0.32
Consensus pattern (19 bp):
GCCCATTTAGCCAATTCTA
Found at i:24860 original size:16 final size:15
Alignment explanation
Indices: 24834--24870 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 15
24824 TCATAGCCCA
*
24834 ACTTTTGGCTTTTCG
1 ACTTTTAGCTTTTCG
24849 ACATTTTAGCTTTTCG
1 AC-TTTTAGCTTTTCG
24865 ACTTTT
1 ACTTTT
24871 CGGCATTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.14, C:0.19, G:0.14, T:0.54
Consensus pattern (15 bp):
ACTTTTAGCTTTTCG
Found at i:27715 original size:7 final size:7
Alignment explanation
Indices: 27703--27852 Score: 59
Period size: 7 Copynumber: 22.0 Consensus size: 7
27693 CCTTATTTTC
27703 ATATTAT
1 ATATTAT
27710 ATATTAT
1 ATATTAT
*
27717 ATAAGTATT
1 AT-ATTA-T
*
27726 TTATTAT
1 ATATTAT
27733 ATATTATTT
1 ATATTA--T
27742 ATATTAT
1 ATATTAT
*
27749 -TATTGT
1 ATATTAT
*
27755 TTATTAT
1 ATATTAT
27762 ATATTAT
1 ATATTAT
* **
27769 -TTTTCGC
1 ATATT-AT
* *
27776 AAATTGT
1 ATATTAT
27783 -TATTAT
1 ATATTAT
*
27789 TTA-TAT
1 ATATTAT
27795 ATATTAT
1 ATATTAT
27802 ATATTAT
1 ATATTAT
27809 -TATT-T
1 ATATTAT
* * *
27814 TTCTTAC
1 ATATTAT
27821 ATA-TAT
1 ATATTAT
27827 ACT-TT-T
1 A-TATTAT
27833 ATATTAT
1 ATATTAT
27840 ATATTAT
1 ATATTAT
27847 A-ATTAT
1 ATATTAT
27853 TGTATTAAAT
Statistics
Matches: 107, Mismatches: 21, Indels: 31
0.67 0.13 0.19
Matches are distributed among these distances:
5 2 0.02
6 36 0.34
7 52 0.49
8 8 0.07
9 9 0.08
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (7 bp):
ATATTAT
Found at i:27732 original size:16 final size:16
Alignment explanation
Indices: 27704--27748 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
27694 CTTATTTTCA
27704 TATTATATATTATATAAG
1 TATT-TATATTATAT-AG
*
27722 TATTT-TATTATATAT
1 TATTTATATTATATAG
27737 TATTTATATTAT
1 TATTTATATTAT
27749 TATTGTTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 6 0.24
16 14 0.56
17 1 0.04
18 4 0.16
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (16 bp):
TATTTATATTATATAG
Found at i:27746 original size:9 final size:10
Alignment explanation
Indices: 27704--27881 Score: 65
Period size: 10 Copynumber: 17.8 Consensus size: 10
27694 CTTATTTTCA
27704 TATTATATAT
1 TATTATATAT
*
27714 TATATAAGTATTT
1 TAT-T-A-TATAT
27727 TATTATATAT
1 TATTATATAT
27737 TATT-TATAT
1 TATTATATAT
*
27746 TATTAT-TGTT
1 TATTATAT-AT
27756 TATTATATAT
1 TATTATATAT
*
27766 TATT-TTTCGCA-
1 TATTATAT---AT
* *
27777 AATTGT-TAT
1 TATTATATAT
27786 TATT-TATAT
1 TATTATATAT
27795 ATATTATATAT
1 -TATTATATAT
*
27806 TATTAT-TTT
1 TATTATATAT
* *
27815 TCTTACATAT
1 TATTATATAT
27825 ATACTT-T-TA-
1 -TA-TTATATAT
27834 TATTATATAT
1 TATTATATAT
*
27844 TATAAT-TATT
1 TATTATATA-T
* *
27854 GTATTAAATCT
1 -TATTATATAT
27865 T-TTATATAT
1 TATTATATAT
27874 TATTATAT
1 TATTATAT
27882 CATTTATACA
Statistics
Matches: 125, Mismatches: 19, Indels: 48
0.65 0.10 0.25
Matches are distributed among these distances:
7 2 0.02
8 5 0.04
9 35 0.28
10 51 0.41
11 18 0.14
12 7 0.06
13 7 0.06
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.60
Consensus pattern (10 bp):
TATTATATAT
Found at i:27808 original size:23 final size:23
Alignment explanation
Indices: 27782--27879 Score: 69
Period size: 23 Copynumber: 4.3 Consensus size: 23
27772 TCGCAAATTG
27782 TTATTATTTATATATATTATATA
1 TTATTATTTATATATATTATATA
* * *
27805 TTATTATTTTTCT-TACATATATA
1 TTATTATTTATATATA-TTATATA
*
27828 CTT-TTATAT-TATATATTATA-A
1 -TTATTATTTATATATATTATATA
* * * *
27849 TTATTGTATTAAATCTTTTATATA
1 TTATTAT-TTATATATATTATATA
27873 TTATTAT
1 TTATTAT
27880 ATCATTTATA
Statistics
Matches: 56, Mismatches: 12, Indels: 13
0.69 0.15 0.16
Matches are distributed among these distances:
20 2 0.04
21 4 0.07
22 9 0.16
23 32 0.57
24 9 0.16
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.60
Consensus pattern (23 bp):
TTATTATTTATATATATTATATA
Found at i:27843 original size:19 final size:19
Alignment explanation
Indices: 27633--27843 Score: 51
Period size: 18 Copynumber: 11.4 Consensus size: 19
27623 AATCTAACCC
27633 TATATAT-TTATTTT-TAT
1 TATATATATTATTTTATAT
27650 TATTATATATATATTTTATAT
1 TA-TATATAT-TATTTTATAT
* * *
27671 TGT-TAT-TTTTTTTATTT
1 TATATATATTATTTTATAT
* **
27688 TTTA-ACCTTATTTTCATA-
1 TATATATATTATTTT-ATAT
* *
27706 T-TATATATTATATAAGTAT
1 TATATATATTATTTTA-TAT
* *
27725 TTTAT-TA-TATATTAT-T
1 TATATATATTATTTTATAT
27741 TATAT-TATTATTGTT-TAT
1 TATATATATTATT-TTATAT
* *
27759 TATATATTATT-TTTCGCAAAT
1 TATATA-TATTATTT--TATAT
* *
27780 TGT-TATTATT-TATATATAT
1 TATATA-TATTAT-TTTATAT
*
27799 TATATATTATTATTTT-TCT
1 TATATA-TATTATTTTATAT
*
27818 TACATATA-TACTTTTATAT
1 TATATATATTA-TTTTATAT
27837 TATATAT
1 TATATAT
27844 TATAATTATT
Statistics
Matches: 144, Mismatches: 26, Indels: 46
0.67 0.12 0.21
Matches are distributed among these distances:
16 7 0.05
17 23 0.16
18 42 0.29
19 31 0.22
20 31 0.22
21 10 0.07
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (19 bp):
TATATATATTATTTTATAT
Found at i:27887 original size:19 final size:19
Alignment explanation
Indices: 27855--27894 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
27845 ATAATTATTG
* *
27855 TATTAAATCTTTTATATAT
1 TATTAAATCATTTATACAT
*
27874 TATTATATCATTTATACAT
1 TATTAAATCATTTATACAT
27893 TA
1 TA
27895 AATGCTAGTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (19 bp):
TATTAAATCATTTATACAT
Done.