Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2060
Parameters: 2 7 7 80 10 50 1000
Length:  80632

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1522--2796
149
8.5
144
78
11
1236
30
15
19
33
1.94
1526--2796
72
16.9
75
78
9
959
31
15
19
33
1.94
2501--2798
73
4.1
73
86
6
390
30
16
20
32
1.95
1594--2796
455
2.6
453
94
1
2061
30
15
20
33
1.94
2663--3007
177
1.9
173
84
8
444
31
17
20
30
1.95
4982--5018
13
3.0
13
84
7
51
29
5
2
62
1.31
4770--5113
161
2.1
170
89
8
537
32
4
4
58
1.38
4820--5016
3
64.7
3
66
23
76
31
4
4
59
1.36
5241--5289
9
5.0
10
79
18
50
28
4
2
65
1.22
7485--7551
21
3.0
22
68
14
57
22
4
13
59
1.52
17117--17308
90
2.1
92
88
5
284
44
4
4
46
1.41
17286--17384
52
2.0
52
80
11
118
45
6
2
46
1.39
17341--17374
17
2.0
17
94
0
59
44
5
0
50
1.26
17346--17393
17
3.0
16
79
17
55
45
6
2
45
1.40
17434--17468
18
2.0
17
88
5
52
40
0
0
60
0.97
17383--17604
120
1.9
119
96
0
408
42
2
6
49
1.40
17542--17812
144
1.9
146
93
4
476
47
2
3
46
1.32
17697--17731
18
2.0
17
88
5
52
45
0
0
54
0.99
17893--17987
45
2.1
45
88
1
138
32
27
5
34
1.79
17966--17998
16
2.1
16
94
0
57
30
36
0
33
1.58
17979--18021
21
2.0
21
95
0
77
34
37
0
27
1.57
19652--19922
41
6.6
40
73
11
192
38
15
24
21
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19652--19922
82
3.3
82
78
7
273
38
15
24
21
1.92
22162--22217
28
2.0
27
82
3
67
42
0
5
51
1.24
23528--23645
46
2.6
46
80
2
139
32
16
23
27
1.96
41917--41949
16
2.1
16
100
0
66
33
24
18
24
1.97
48883--48964
30
2.7
30
92
0
128
17
47
7
28
1.74
49379--49411
15
2.1
16
88
5
50
12
0
3
84
0.72
49400--49586
18
10.1
18
69
17
80
28
8
3
60
1.41
49386--49467
9
8.4
10
74
14
64
26
3
1
68
1.14
50838--50866
15
2.0
15
93
6
51
10
34
6
48
1.64
58182--58357
46
3.8
45
77
12
196
19
19
31
29
1.97
58178--58350
93
1.9
93
93
0
301
19
20
31
28
1.97
60457--60514
30
1.9
30
92
0
98
20
32
22
24
1.98
65289--65377
42
2.1
42
83
8
110
30
25
15
28
1.96
75072--75112
21
2.0
21
90
0
64
34
4
2
58
1.32

Tables:   1

The End!