Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold3345

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9416
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.31


Found at i:7271 original size:41 final size:41

Alignment explanation


    Indices: 7226--7339  Score: 205
    Period size: 41  Copynumber: 2.8  Consensus size: 41

       7216 TGATTCAGTA

                                                      
       7226 CACCGGCACTT-AGCCTGCTAGACATATAGTCTGAAATGTAT
          1 CACCGGCA-TTAAGCCTGCTAGACATATAGTCTGAAATGTAT

                                                     
       7267 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
          1 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT

                                             
       7308 CACCGGCATTAAGCCTGCTAGAC-TATAGTCTG
          1 CACCGGCATTAAGCCTGCTAGACATATAGTCTG

       7340 TATTACATTC


Statistics
Matches: 72,  Mismatches: 0, Indels: 3
        0.96            0.00        0.04

Matches are distributed among these distances:
  40   11  0.15
  41   61  0.85

ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26


Consensus pattern (41 bp):   
CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
Done.