Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold3563
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38712
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Found at i:6177 original size:50 final size:50
Alignment explanation
Indices: 6112--6251 Score: 244
Period size: 50 Copynumber: 2.8 Consensus size: 50
6102 AACAAGTGAT
*
6112 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAGGAAAAGCGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAAAAGCGA
* *
6162 AAGTGATAAGTGATAGCTTCGACTACACTTATCTGATCAAGGAAAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAAAAGCGA
*
6212 AAGTGATAAGTGATAGCTTCGGCTAAACTTATCTGATCAA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAA
6252 TGACAAATGA
Statistics
Matches: 85, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 85 1.00
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.26
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAAAAGCGA
Found at i:6223 original size:57 final size:51
Alignment explanation
Indices: 6105--6282 Score: 227
Period size: 50 Copynumber: 3.5 Consensus size: 51
6095 TACGGGAAAC
*
6105 AAGTGATAAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAGGAA
1 AAGTGATAAGTGATAAGTGATAGCTTCGACTACACTTATCTAATCAAGGAA
* *
6156 AAGCGA-AAGTGATAAGTGATAGCTTCGACTACACTTATCTGATCAAGGAA
1 AAGTGATAAGTGATAAGTGATAGCTTCGACTACACTTATCTAATCAAGGAA
* * * *
6206 AAGTGA-AAGTGATAAGTGATAGCTTCGGCTAAACTTATCTGATCAATGACA
1 AAGTGATAAGTGATAAGTGATAGCTTCGACTACACTTATCTAATCAAGGA-A
* * * *
6257 AA-TGACAAGTGAAAAATGGTAGCTTC
1 AAGTGATAAGTGATAAGTGATAGCTTC
6283 AGCTACCTGA
Statistics
Matches: 115, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
50 90 0.78
51 25 0.22
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.26
Consensus pattern (51 bp):
AAGTGATAAGTGATAAGTGATAGCTTCGACTACACTTATCTAATCAAGGAA
Found at i:6302 original size:31 final size:31
Alignment explanation
Indices: 6264--6412 Score: 210
Period size: 31 Copynumber: 4.8 Consensus size: 31
6254 ACAAATGACA
* * *
6264 AGTGAAAAATGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
6295 AGTGAAAAGTGGTAGCTCCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
6326 AGTGAAAAGTGGTAGCTCCGGCTACTTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
6357 AGTGAAAAGTGGTAG-TACTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCT-CCGGCTACCTGATC
* *
6388 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTCCGGCTAC
6413 AAGTGACAAG
Statistics
Matches: 107, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
30 1 0.01
31 105 0.98
32 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
Found at i:6504 original size:47 final size:46
Alignment explanation
Indices: 6430--6585 Score: 150
Period size: 47 Copynumber: 3.3 Consensus size: 46
6420 AAGTGATTTC
* * * *
6430 CGTACAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
* * *
6476 CTGTATAAGACCATATTTGGGATATGGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
* * * * * *
6523 CGTGTAAGACCATAGCTGGGCTATGGCATCAATATGTGATATGTGATTA
1 CGTATAAGACCATATCTGGGATATGGCATC-A-GTGAGATATATGA-TA
*
6572 CGTGTAAGACCATA
1 CGTATAAGACCATA
6586 GCTACGCTAT
Statistics
Matches: 92, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
46 26 0.28
47 40 0.43
48 11 0.12
49 15 0.16
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
Found at i:6621 original size:42 final size:42
Alignment explanation
Indices: 6573--6727 Score: 204
Period size: 42 Copynumber: 3.7 Consensus size: 42
6563 ATGTGATTAC
**
6573 GTGTAAGACCATAGCTACGCTATGGCATCATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCATTATGTGAAGAT
* * *
6615 GTGTAAGACCATAGTTGGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
* *
6657 GTGTAAGATCATAGCTGGGCTATGGCATTATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCATTATGTGAAGAT
* **
6699 GTGTAAGACCATAGTTGAACTATGGCATC
1 GTGTAAGACCATAGCTGGGCTATGGCATC
6728 GAGAAAACGA
Statistics
Matches: 96, Mismatches: 15, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
41 1 0.01
42 94 0.98
43 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCATTATGTGAAGAT
Found at i:6671 original size:84 final size:84
Alignment explanation
Indices: 6573--6729 Score: 260
Period size: 84 Copynumber: 1.9 Consensus size: 84
6563 ATGTGATTAC
**
6573 GTGTAAGACCATAGCTACGCTATGGCATCATTATGTGAAGATGTGTAAGACCATAGTTGGGCTAT
1 GTGTAAGACCATAGCTACGCTATGGCATCATTATGTGAAGATGTGTAAGACCATAGTTGAACTAT
6638 GGCATCGATATATGAATAT
66 GGCATCGATATATGAATAT
* ** *
6657 GTGTAAGATCATAGCTGGGCTATGGCATTATTATGTGAAGATGTGTAAGACCATAGTTGAACTAT
1 GTGTAAGACCATAGCTACGCTATGGCATCATTATGTGAAGATGTGTAAGACCATAGTTGAACTAT
6722 GGCATCGA
66 GGCATCGA
6730 GAAAACGAAG
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
84 67 1.00
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (84 bp):
GTGTAAGACCATAGCTACGCTATGGCATCATTATGTGAAGATGTGTAAGACCATAGTTGAACTAT
GGCATCGATATATGAATAT
Found at i:9043 original size:114 final size:114
Alignment explanation
Indices: 8843--9067 Score: 441
Period size: 114 Copynumber: 2.0 Consensus size: 114
8833 AAGATCTTTA
8843 GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
1 GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
8908 TCTTAAGAATTATAAAACATCTCCTTGAAAAGTTCCTACAAAATAATTT
66 TCTTAAGAATTATAAAACATCTCCTTGAAAAGTTCCTACAAAATAATTT
8957 GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
1 GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
*
9022 TCTTAAGAATTGTAAAACATCTCCTTGAAAAGTTCCTACAAAATAA
66 TCTTAAGAATTATAAAACATCTCCTTGAAAAGTTCCTACAAAATAA
9068 ATTAAAAATT
Statistics
Matches: 110, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
114 110 1.00
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.40
Consensus pattern (114 bp):
GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
TCTTAAGAATTATAAAACATCTCCTTGAAAAGTTCCTACAAAATAATTT
Found at i:10942 original size:114 final size:114
Alignment explanation
Indices: 10742--10966 Score: 441
Period size: 114 Copynumber: 2.0 Consensus size: 114
10732 AAGATCTTTA
10742 GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
1 GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
10807 TCTTAAGAATTATAAAACATCTCCTTGAAAAGTTCCTACAAAATAATTT
66 TCTTAAGAATTATAAAACATCTCCTTGAAAAGTTCCTACAAAATAATTT
10856 GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
1 GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
*
10921 TCTTAAGAATTGTAAAACATCTCCTTGAAAAGTTCCTACAAAATAA
66 TCTTAAGAATTATAAAACATCTCCTTGAAAAGTTCCTACAAAATAA
10967 ATTAAAAATT
Statistics
Matches: 110, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
114 110 1.00
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.40
Consensus pattern (114 bp):
GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
TCTTAAGAATTATAAAACATCTCCTTGAAAAGTTCCTACAAAATAATTT
Found at i:12842 original size:114 final size:114
Alignment explanation
Indices: 12642--12866 Score: 441
Period size: 114 Copynumber: 2.0 Consensus size: 114
12632 AAGATCTTTA
12642 GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
1 GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
12707 TCTTAAGAATTATAAAACATCTCCTTGAAAAGTTCCTACAAAATAATTT
66 TCTTAAGAATTATAAAACATCTCCTTGAAAAGTTCCTACAAAATAATTT
12756 GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
1 GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
*
12821 TCTTAAGAATTGTAAAACATCTCCTTGAAAAGTTCCTACAAAATAA
66 TCTTAAGAATTATAAAACATCTCCTTGAAAAGTTCCTACAAAATAA
12867 ATTAAAAATT
Statistics
Matches: 110, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
114 110 1.00
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.40
Consensus pattern (114 bp):
GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
TCTTAAGAATTATAAAACATCTCCTTGAAAAGTTCCTACAAAATAATTT
Found at i:14743 original size:114 final size:114
Alignment explanation
Indices: 14543--14767 Score: 441
Period size: 114 Copynumber: 2.0 Consensus size: 114
14533 AAGATCTTTA
14543 GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
1 GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
14608 TCTTAAGAATTATAAAACATCTCCTTGAAAAGTTCCTACAAAATAATTT
66 TCTTAAGAATTATAAAACATCTCCTTGAAAAGTTCCTACAAAATAATTT
14657 GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
1 GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
*
14722 TCTTAAGAATTGTAAAACATCTCCTTGAAAAGTTCCTACAAAATAA
66 TCTTAAGAATTATAAAACATCTCCTTGAAAAGTTCCTACAAAATAA
14768 ATTAAAAATT
Statistics
Matches: 110, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
114 110 1.00
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.40
Consensus pattern (114 bp):
GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
TCTTAAGAATTATAAAACATCTCCTTGAAAAGTTCCTACAAAATAATTT
Found at i:16643 original size:114 final size:114
Alignment explanation
Indices: 16443--16667 Score: 441
Period size: 114 Copynumber: 2.0 Consensus size: 114
16433 AAGATCTTTA
16443 GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
1 GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
16508 TCTTAAGAATTATAAAACATCTCCTTGAAAAGTTCCTACAAAATAATTT
66 TCTTAAGAATTATAAAACATCTCCTTGAAAAGTTCCTACAAAATAATTT
16557 GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
1 GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
*
16622 TCTTAAGAATTGTAAAACATCTCCTTGAAAAGTTCCTACAAAATAA
66 TCTTAAGAATTATAAAACATCTCCTTGAAAAGTTCCTACAAAATAA
16668 ATTAAAAATT
Statistics
Matches: 110, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
114 110 1.00
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.40
Consensus pattern (114 bp):
GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
TCTTAAGAATTATAAAACATCTCCTTGAAAAGTTCCTACAAAATAATTT
Found at i:18545 original size:114 final size:114
Alignment explanation
Indices: 18345--18569 Score: 441
Period size: 114 Copynumber: 2.0 Consensus size: 114
18335 AAGATCTTTA
18345 GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
1 GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
18410 TCTTAAGAATTATAAAACATCTCCTTGAAAAGTTCCTACAAAATAATTT
66 TCTTAAGAATTATAAAACATCTCCTTGAAAAGTTCCTACAAAATAATTT
18459 GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
1 GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
*
18524 TCTTAAGAATTGTAAAACATCTCCTTGAAAAGTTCCTACAAAATAA
66 TCTTAAGAATTATAAAACATCTCCTTGAAAAGTTCCTACAAAATAA
18570 ATTAAAAATT
Statistics
Matches: 110, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
114 110 1.00
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.40
Consensus pattern (114 bp):
GGAGTACCTATTTGATTAATAAGTTGTCCTTTTTGGACTTTTCCTACTTCTGATTCTTCCCATCG
TCTTAAGAATTATAAAACATCTCCTTGAAAAGTTCCTACAAAATAATTT
Found at i:27687 original size:79 final size:80
Alignment explanation
Indices: 27547--27758 Score: 254
Period size: 79 Copynumber: 2.7 Consensus size: 80
27537 TATTCGAATG
* * * **
27547 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGC
27612 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGTTACT
* *
27628 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGG
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGG
*
27690 CATTTGTGTGAGTTACT
64 CATTTGTGCGAGTTACT
* * *
27707 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAA
27759 ATTCTGAAGG
Statistics
Matches: 113, Mismatches: 13, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
78 1 0.01
79 58 0.51
80 42 0.37
81 12 0.11
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:27749 original size:40 final size:40
Alignment explanation
Indices: 27547--27754 Score: 253
Period size: 40 Copynumber: 5.2 Consensus size: 40
27537 TATTCGAATG
* * *
27547 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
*
27588 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
*
27628 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
27667 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
27707 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
27747 ATATCCGG
1 ATATCCGG
27755 TTAAATTCTG
Statistics
Matches: 145, Mismatches: 16, Indels: 13
0.83 0.09 0.07
Matches are distributed among these distances:
39 37 0.26
40 79 0.54
41 28 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:35766 original size:40 final size:40
Alignment explanation
Indices: 35682--35873 Score: 223
Period size: 40 Copynumber: 4.8 Consensus size: 40
35672 TCGAATGATG
* * *
35682 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
35721 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
35762 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
35801 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
35840 AACCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
35874 AGCTATATCC
Statistics
Matches: 132, Mismatches: 14, Indels: 12
0.84 0.09 0.08
Matches are distributed among these distances:
39 36 0.27
40 86 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:35818 original size:79 final size:79
Alignment explanation
Indices: 35682--35899 Score: 248
Period size: 79 Copynumber: 2.7 Consensus size: 79
35672 TCGAATGATG
* * * **
35682 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAG-TCCGAAGGCATT
35746 TGTGCGAGTTACTA-A
64 TGTGCGAGTTACTATA
* *
35761 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGT-CCGAAGGCATT
35825 TGTGCGAGTTACTATA
64 TGTGCGAGTTACTATA
* * * *
35841 ACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTT-AAGTCCGAAGG
35900 TATGTGATTC
Statistics
Matches: 119, Mismatches: 13, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
78 1 0.01
79 72 0.61
80 46 0.39
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCGAAGGCATTTG
TGCGAGTTACTATA
Done.