Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2242
Parameters: 2 7 7 80 10 50 1000
Length:  78431

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
949--989
3
14.0
3
80
14
50
60
2
36
0
1.10
959--989
11
2.8
11
100
0
62
64
0
35
0
0.94
5043--5251
39
5.3
40
79
8
232
23
21
28
27
1.99
5042--5251
79
2.7
79
88
4
309
23
20
28
27
1.99
13104--13315
40
5.3
40
83
5
268
23
20
28
26
1.99
13108--13315
80
2.6
80
91
0
328
23
21
29
26
1.99
25200--25497
44
6.7
45
73
9
243
26
23
20
29
1.99
25200--25545
133
2.6
133
88
0
521
26
23
19
30
1.98
25200--25496
89
3.3
86
73
11
244
25
23
20
29
1.99
25202--25530
44
7.4
44
73
5
205
25
24
19
30
1.98
30395--30443
24
2.0
24
84
8
62
53
10
16
20
1.72
31397--31449
24
2.2
24
83
6
72
39
16
20
22
1.92
43315--43404
23
4.0
23
74
8
76
25
21
20
33
1.97
43571--43628
20
2.9
20
86
0
80
37
6
20
34
1.80
43600--43638
20
2.0
20
89
0
60
38
10
15
35
1.81
46775--47057
40
7.1
40
87
4
396
25
21
26
26
2.00
46775--47057
79
3.6
80
85
6
396
25
21
26
26
2.00
46779--47057
119
2.3
118
85
8
386
25
21
26
26
1.99
54924--55204
40
7.1
40
87
5
394
24
22
26
26
2.00
54924--55204
79
3.6
79
85
8
392
24
22
26
26
2.00
63009--63269
40
6.6
40
85
8
354
24
22
26
26
2.00
63009--63263
79
3.2
79
85
8
347
24
22
26
26
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63012--63269
119
2.2
118
85
8
362
25
21
26
26
2.00
63009--63302
79
3.7
79
82
10
343
25
21
26
25
2.00
69711--69905
39
4.9
41
79
14
196
27
27
20
24
1.99

Tables:   1

The End!