Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1044
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33040
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Found at i:5186 original size:39 final size:39
Alignment explanation
Indices: 5143--5362 Score: 197
Period size: 39 Copynumber: 5.6 Consensus size: 39
5133 GCTCCTCGTT
*
5143 CAAATGCCTTCGGGACATAGCCCGGTTATAGTA-ATCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-TAGTATATCGCA
*
5182 CAAATGCCTTCGGGACTTAACCCGGATTTAGTA-ACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTTAGTATA-TCGCA
* *
5222 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTTAGTATATCGCA
* * *
5261 CAAATGCCTTC--GATCTTAGTCCGGATTAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTTAGTATATCGCA
* * * *
5299 CAAATGCCTTC--GATCTTAGTCCGGATATGGTCACT-TAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTTAGT-A-TATCGCA
5339 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
5363 ACATCATTCA
Statistics
Matches: 160, Mismatches: 11, Indels: 19
0.84 0.06 0.10
Matches are distributed among these distances:
37 1 0.01
38 38 0.24
39 79 0.49
40 39 0.24
41 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTTAGTATATCGCA
Found at i:5298 original size:38 final size:38
Alignment explanation
Indices: 5143--5324 Score: 199
Period size: 39 Copynumber: 4.7 Consensus size: 38
5133 GCTCCTCGTT
* * *
5143 CAAATGCCTTCGGGA-CATAGCCCGGTTATAGTA-ATCGCA
1 CAAATGCCTTC--GATCTTAGCCCGGAT-TAGTATCTCGCA
* *
5182 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC--GATCTTAGCCCGGA-TTAGTATCTCGCA
**
5222 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGATCTTAGCCCGG-ATTAGTATCTCGCA
*
5261 CAAATGCCTTCGATCTTAGTCCGGATTAGTATCTCGCA
1 CAAATGCCTTCGATCTTAGCCCGGATTAGTATCTCGCA
*
5299 CAAATGCCTTCGATCTTAGTCCGGAT
1 CAAATGCCTTCGATCTTAGCCCGGAT
5325 ATGGTCACTT
Statistics
Matches: 129, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
38 41 0.32
39 70 0.54
40 18 0.14
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (38 bp):
CAAATGCCTTCGATCTTAGCCCGGATTAGTATCTCGCA
Found at i:5317 original size:77 final size:78
Alignment explanation
Indices: 5143--5323 Score: 208
Period size: 77 Copynumber: 2.3 Consensus size: 78
5133 GCTCCTCGTT
* * * *
5143 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTA-ATCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGAG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTC-GGACTTAACCCG
5206 GATTTAGTAACTCGCA
63 GATTTAGTAACTCGCA
* **
5222 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GATCTTAGTCCGGA
1 CAAATGCCTTCGAGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGA-CTTAACCCGGA
*
5286 -TTAGTATCTCGCA
65 TTTAGTAACTCGCA
* *
5299 CAAATGCCTTCGATCTTAGTCCGGA
1 CAAATGCCTTCGAGCTTAGCCCGGA
5324 TATGGTCACT
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
77 36 0.40
78 23 0.26
79 31 0.34
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (78 bp):
CAAATGCCTTCGAGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGACTTAACCCGGAT
TTAGTAACTCGCA
Found at i:7359 original size:9 final size:10
Alignment explanation
Indices: 7345--7383 Score: 53
Period size: 12 Copynumber: 3.8 Consensus size: 10
7335 ATTGGAGTAA
7345 CAAAAAAA-T
1 CAAAAAAATT
7354 CAAAAAAATT
1 CAAAAAAATT
7364 CAAAAAAAAATT
1 C--AAAAAAATT
7376 CAAAAAAA
1 CAAAAAAA
7384 AGTGAAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
9 8 0.30
10 9 0.33
12 10 0.37
ACGTcount: A:0.77, C:0.10, G:0.00, T:0.13
Consensus pattern (10 bp):
CAAAAAAATT
Found at i:7370 original size:12 final size:12
Alignment explanation
Indices: 7355--7384 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
7345 CAAAAAAATC
7355 AAAAAAATTCAA
1 AAAAAAATTCAA
7367 AAAAAAATTCAA
1 AAAAAAATTCAA
7379 AAAAAA
1 AAAAAA
7385 GTGAAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.80, C:0.07, G:0.00, T:0.13
Consensus pattern (12 bp):
AAAAAAATTCAA
Found at i:7392 original size:12 final size:11
Alignment explanation
Indices: 7346--7395 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
7336 TTGGAGTAAC
7346 AAAAAAATC-A
1 AAAAAAATCAA
*
7356 AAAAAATTCAA
1 AAAAAAATCAA
7367 AAAAAAATTCAA
1 AAAAAAA-TCAA
* *
7379 AAAAAAGTGAA
1 AAAAAAATCAA
7390 AAAAAA
1 AAAAAA
7396 TCGAGCAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
10 8 0.24
11 16 0.47
12 10 0.29
ACGTcount: A:0.78, C:0.06, G:0.04, T:0.12
Consensus pattern (11 bp):
AAAAAAATCAA
Found at i:8343 original size:12 final size:12
Alignment explanation
Indices: 8326--8350 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8316 AAGAGAGAGG
8326 GTTTGAAAAAGA
1 GTTTGAAAAAGA
8338 GTTTGAAAAAGA
1 GTTTGAAAAAGA
8350 G
1 G
8351 AAGAGTGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.28, T:0.24
Consensus pattern (12 bp):
GTTTGAAAAAGA
Found at i:9888 original size:20 final size:20
Alignment explanation
Indices: 9863--9909 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
9853 AGCTCGTTTC
9863 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCGAGCTCAAGT
* * *
9883 CAGCTCATTCGAGCTTAATT
1 CAGCTCACTCGAGCTCAAGT
9903 CAGCTCA
1 CAGCTCA
9910 ATCTTAACCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (20 bp):
CAGCTCACTCGAGCTCAAGT
Found at i:12712 original size:24 final size:23
Alignment explanation
Indices: 12658--12713 Score: 58
Period size: 24 Copynumber: 2.4 Consensus size: 23
12648 GATTAATTAA
**
12658 GAAATGGTATTTGGTTTTGGTAC
1 GAAATGGTATTTGGAATTGGTAC
***
12681 GTTTTGGTATTTGGGAATTGGTAC
1 GAAATGGTATTT-GGAATTGGTAC
12705 GAAATGGTA
1 GAAATGGTA
12714 AGGGCTTTGG
Statistics
Matches: 24, Mismatches: 8, Indels: 1
0.73 0.24 0.03
Matches are distributed among these distances:
23 9 0.38
24 15 0.62
ACGTcount: A:0.23, C:0.04, G:0.32, T:0.41
Consensus pattern (23 bp):
GAAATGGTATTTGGAATTGGTAC
Found at i:14636 original size:15 final size:16
Alignment explanation
Indices: 14616--14672 Score: 71
Period size: 16 Copynumber: 3.6 Consensus size: 16
14606 TAGCTTCTTC
14616 TTTTTTTCACGAAAATT
1 TTTTTTTCACGAAAA-T
*
14633 TTTTTTTCACG-AATT
1 TTTTTTTCACGAAAAT
**
14648 TTTTTTTCACGAATTT
1 TTTTTTTCACGAAAAT
14664 TTTTTTTCA
1 TTTTTTTCA
14673 ACTTGATATC
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
15 12 0.32
16 14 0.38
17 11 0.30
ACGTcount: A:0.21, C:0.12, G:0.05, T:0.61
Consensus pattern (16 bp):
TTTTTTTCACGAAAAT
Found at i:14638 original size:17 final size:16
Alignment explanation
Indices: 14616--14672 Score: 89
Period size: 15 Copynumber: 3.6 Consensus size: 16
14606 TAGCTTCTTC
14616 TTTTTTTCACGAAAATT
1 TTTTTTTCACG-AAATT
14633 TTTTTTTCACG-AATT
1 TTTTTTTCACGAAATT
*
14648 TTTTTTTCACGAATTT
1 TTTTTTTCACGAAATT
14664 TTTTTTTCA
1 TTTTTTTCA
14673 ACTTGATATC
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
15 15 0.39
16 12 0.32
17 11 0.29
ACGTcount: A:0.21, C:0.12, G:0.05, T:0.61
Consensus pattern (16 bp):
TTTTTTTCACGAAATT
Found at i:14732 original size:15 final size:15
Alignment explanation
Indices: 14725--14758 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
14715 TTTTTTTCAA
14725 TTTTTTTTGAATTTT
1 TTTTTTTTGAATTTT
14740 TTTTTTTTGAATTTT
1 TTTTTTTTGAATTTT
14755 TTTT
1 TTTT
14759 GAAATTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.06, T:0.82
Consensus pattern (15 bp):
TTTTTTTTGAATTTT
Found at i:14752 original size:26 final size:26
Alignment explanation
Indices: 14712--14771 Score: 102
Period size: 26 Copynumber: 2.3 Consensus size: 26
14702 GGAAACCAAA
*
14712 TTTTTTTTTTCAATTTTTTTTGAATT
1 TTTTTTTTTTCAATTTTTTTTGAAAT
*
14738 TTTTTTTTTTGAATTTTTTTTGAAAT
1 TTTTTTTTTTCAATTTTTTTTGAAAT
14764 TTTTTTTT
1 TTTTTTTT
14772 GAAGAAACTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.15, C:0.02, G:0.05, T:0.78
Consensus pattern (26 bp):
TTTTTTTTTTCAATTTTTTTTGAAAT
Found at i:14754 original size:13 final size:12
Alignment explanation
Indices: 14713--14774 Score: 65
Period size: 11 Copynumber: 5.0 Consensus size: 12
14703 GAAACCAAAT
*
14713 TTTTTTTTTCAA
1 TTTTTTTTTGAA
14725 -TTTTTTTTGAA
1 TTTTTTTTTGAA
14736 TTTTTTTTTTTTGAA
1 ---TTTTTTTTTGAA
14751 -TTTTTTTTGAAA
1 TTTTTTTTTG-AA
14763 TTTTTTTTTGAA
1 TTTTTTTTTGAA
14775 GAAACTACTA
Statistics
Matches: 43, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
11 19 0.44
12 4 0.09
13 9 0.21
15 11 0.26
ACGTcount: A:0.18, C:0.02, G:0.06, T:0.74
Consensus pattern (12 bp):
TTTTTTTTTGAA
Found at i:14769 original size:15 final size:15
Alignment explanation
Indices: 14725--14771 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
14715 TTTTTTTCAA
*
14725 TTTTTTTTGAATTTT
1 TTTTTTTTGAAATTT
14740 TTTTTTTTG-AA---
1 TTTTTTTTGAAATTT
14751 TTTTTTTTGAAATTT
1 TTTTTTTTGAAATTT
14766 TTTTTT
1 TTTTTT
14772 GAAGAAACTA
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
11 9 0.33
12 2 0.07
14 1 0.04
15 15 0.56
ACGTcount: A:0.15, C:0.00, G:0.06, T:0.79
Consensus pattern (15 bp):
TTTTTTTTGAAATTT
Found at i:16897 original size:11 final size:12
Alignment explanation
Indices: 16881--16914 Score: 61
Period size: 11 Copynumber: 2.9 Consensus size: 12
16871 TAGTAGTTTC
16881 TTCAAAAAAAA-
1 TTCAAAAAAAAT
16892 TTCAAAAAAAAT
1 TTCAAAAAAAAT
16904 TTCAAAAAAAA
1 TTCAAAAAAAA
16915 AATTGGTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.71, C:0.09, G:0.00, T:0.21
Consensus pattern (12 bp):
TTCAAAAAAAAT
Found at i:16901 original size:12 final size:12
Alignment explanation
Indices: 16884--16915 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
16874 TAGTTTCTTC
16884 AAAAAAAATTCA
1 AAAAAAAATTCA
*
16896 AAAAAAATTTCA
1 AAAAAAAATTCA
16908 AAAAAAAA
1 AAAAAAAA
16916 ATTGGTTTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.78, C:0.06, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAAAAAATTCA
Found at i:16978 original size:15 final size:15
Alignment explanation
Indices: 16955--16994 Score: 71
Period size: 15 Copynumber: 2.6 Consensus size: 15
16945 GATATCAAGT
16955 TGAAAAAAAAATTTCG
1 TGAAAAAAAAA-TTCG
16971 TGAAAAAAAAATTCG
1 TGAAAAAAAAATTCG
16986 TGAAAAAAA
1 TGAAAAAAA
16995 GAAGAAGAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 13 0.54
16 11 0.46
ACGTcount: A:0.62, C:0.05, G:0.12, T:0.20
Consensus pattern (15 bp):
TGAAAAAAAAATTCG
Found at i:19429 original size:49 final size:49
Alignment explanation
Indices: 19357--19450 Score: 179
Period size: 49 Copynumber: 1.9 Consensus size: 49
19347 GGGTAGATTT
*
19357 TGATACGAGTCATAAAGGCCCAACCCAAGCTCAAGAAGATGATGGGCTC
1 TGATACGAGTCACAAAGGCCCAACCCAAGCTCAAGAAGATGATGGGCTC
19406 TGATACGAGTCACAAAGGCCCAACCCAAGCTCAAGAAGATGATGG
1 TGATACGAGTCACAAAGGCCCAACCCAAGCTCAAGAAGATGATGG
19451 CTAAAATCAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.15
Consensus pattern (49 bp):
TGATACGAGTCACAAAGGCCCAACCCAAGCTCAAGAAGATGATGGGCTC
Found at i:21123 original size:22 final size:22
Alignment explanation
Indices: 21093--21136 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
21083 TTTGGTATTT
21093 GGGAATTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
*
21115 GGGATTTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
21137 TGGTTCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.36, T:0.25
Consensus pattern (22 bp):
GGGAATTGGTACGAAATGGTAA
Found at i:23747 original size:17 final size:17
Alignment explanation
Indices: 23722--23775 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 17
23712 TCTCTTTTCA
*
23722 TTCTCTTTTTTTGAATT
1 TTCTTTTTTTTTGAATT
* *
23739 TTCTTTTTTTTTCATTT
1 TTCTTTTTTTTTGAATT
* *
23756 TTCTTTTCTTTTGTATT
1 TTCTTTTTTTTTGAATT
23773 TTC
1 TTC
23776 GCTCTTTTCT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.07, C:0.13, G:0.04, T:0.76
Consensus pattern (17 bp):
TTCTTTTTTTTTGAATT
Found at i:26145 original size:20 final size:20
Alignment explanation
Indices: 26122--26168 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
26112 GGGTTAAGAT
*
26122 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
26142 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
26162 TGAGCTG
1 TGAGCTG
26169 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:27915 original size:47 final size:47
Alignment explanation
Indices: 27838--27942 Score: 133
Period size: 47 Copynumber: 2.2 Consensus size: 47
27828 TTGTCTTTTC
* *
27838 TTTCTTTTTCAATTTTCTCTTTTTCCTCACA-CTTTTGTTCAATCTCAA
1 TTTCTTTTTCAATTTTCTCTCTTT-CTCACATCCTTT-TTCAATCTCAA
* *
27886 TTTCTTTTTCGATTTCTTTCTCTTT-TCACATCCTTTTTCAATCTCAA
1 TTTCTTTTTCAATTT-TCTCTCTTTCTCACATCCTTTTTCAATCTCAA
27933 TTTCTTTTTC
1 TTTCTTTTTC
27943 CATGACACTC
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
47 26 0.51
48 18 0.35
49 7 0.14
ACGTcount: A:0.14, C:0.25, G:0.02, T:0.59
Consensus pattern (47 bp):
TTTCTTTTTCAATTTTCTCTCTTTCTCACATCCTTTTTCAATCTCAA
Found at i:27999 original size:18 final size:18
Alignment explanation
Indices: 27918--28001 Score: 53
Period size: 18 Copynumber: 4.6 Consensus size: 18
27908 TTTTCACATC
* *
27918 CTTTTTCAATCTCAATTT
1 CTTTTTCAATCTCACTCT
* **
27936 CTTTTTCCATGACACTCGT
1 CTTTTTCAATCTCACTC-T
* * * *
27955 TTTTTTACACTCTC-GTTT
1 CTTTTT-CAATCTCACTCT
27973 CTTTCTTCAATCTCACTCT
1 CTTT-TTCAATCTCACTCT
27992 CTTTTTCAAT
1 CTTTTTCAAT
28002 TTCTTGTTCC
Statistics
Matches: 46, Mismatches: 16, Indels: 8
0.66 0.23 0.11
Matches are distributed among these distances:
18 28 0.61
19 15 0.33
20 3 0.07
ACGTcount: A:0.17, C:0.27, G:0.04, T:0.52
Consensus pattern (18 bp):
CTTTTTCAATCTCACTCT
Found at i:30564 original size:20 final size:20
Alignment explanation
Indices: 30541--30587 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
30531 GGGTTAAGAT
*
30541 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
30561 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
30581 TGAGCTG
1 TGAGCTG
30588 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:32319 original size:47 final size:48
Alignment explanation
Indices: 32255--32357 Score: 124
Period size: 47 Copynumber: 2.2 Consensus size: 48
32245 TTGTCTTTTC
*
32255 TTTCTTTTTCAATTTTCTCTT-T-TTCCTCACA-CTTTTGTTCAATCTCAA
1 TTTCTTTTTCAATTTTCT-TTCTCTT-CTCACATCCTTT-TTCAATCTCAA
* *
32303 TTTCTTTTTCGA-TTTCTTTCTCTTTTCACATCCTTTTTCAATCTCAA
1 TTTCTTTTTCAATTTTCTTTCTCTTCTCACATCCTTTTTCAATCTCAA
32350 TTTCTTTT
1 TTTCTTTT
32358 CTATGACACT
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
46 2 0.04
47 30 0.61
48 17 0.35
ACGTcount: A:0.15, C:0.24, G:0.02, T:0.59
Consensus pattern (48 bp):
TTTCTTTTTCAATTTTCTTTCTCTTCTCACATCCTTTTTCAATCTCAA
Done.