genome.fa.s187.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3220
Parameters: 2 7 7 80 10 50 1000
Length:  77751

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19437--19642	3	71.0	3	66	21	75	28	8	1	61	1.36
19437--19510	30	2.5	30	82	4	87	31	13	1	54	1.48
19506--19585	40	2.0	40	83	9	101	27	2	2	67	1.16
19529--19632	22	5.0	22	67	21	64	28	3	1	65	1.21
19539--19593	19	2.9	19	78	10	51	30	1	1	65	1.13
19523--19595	14	5.4	13	70	18	51	27	4	1	67	1.17
19523--19628	53	2.0	53	83	14	137	28	4	1	65	1.23
19787--19845	27	2.2	27	87	6	84	28	5	6	59	1.45
21282--21325	17	2.6	17	96	0	79	13	13	20	52	1.74
25885--25998	57	2.0	57	81	8	133	43	8	14	32	1.77
34606--34712	44	2.4	45	76	13	105	28	12	28	30	1.93
34639--35434	45	18.0	42	69	17	179	30	16	26	26	1.97
34695--35013	88	3.6	88	71	11	260	28	18	26	26	1.98
34685--35376	133	5.2	131	69	15	432	30	17	25	26	1.97
34600--35443	177	4.8	177	78	7	784	30	16	26	26	1.97
35095--35436	133	2.6	134	82	9	346	29	18	26	26	1.98
37590--37658	20	3.5	20	82	7	77	10	39	2	47	1.52
45346--45520	46	3.8	46	82	0	136	41	14	21	22	1.90
45345--45520	92	1.9	92	81	1	210	40	14	22	22	1.90
45391--45601	46	4.6	46	81	7	243	42	12	23	21	1.87
45402--45601	90	2.2	91	85	5	262	42	13	23	21	1.88
47399--47475	31	2.5	31	80	4	84	33	0	5	61	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50797--50825	4	7.2	4	100	0	58	75	0	0	24	0.80
50898--50943	15	2.9	15	90	6	65	67	0	6	26	1.15
50892--51027	44	3.3	43	70	21	101	65	2	6	25	1.28
50890--50970	15	5.6	14	76	13	58	66	0	7	25	1.17
51907--52058	44	3.5	43	72	16	141	22	21	23	32	1.98
51904--52382	88	5.4	88	89	1	710	23	22	20	32	1.97
51951--52366	44	9.4	44	66	14	216	23	23	20	32	1.98
51904--52382	177	2.7	176	89	2	721	23	22	20	32	1.97
51904--52382	265	1.8	265	89	2	757	23	22	20	32	1.97
52360--52634	133	2.1	133	88	0	406	27	21	20	30	1.98
52602--52699	45	2.2	45	85	3	126	29	22	16	31	1.96
52470--53637	178	6.4	178	80	8	1298	27	23	18	30	1.97
52816--52863	22	2.2	22	88	7	71	20	31	14	33	1.93
52648--53039	200	2.0	200	89	2	608	27	23	17	30	1.97
52470--53637	378	3.2	368	86	5	1471	27	23	18	30	1.97
53159--53255	45	2.2	44	87	7	133	26	20	18	34	1.96
52838--53637	354	2.3	356	88	2	1171	28	22	18	31	1.97
57360--57481	52	2.4	52	78	15	137	64	0	7	27	1.20
57404--57449	15	2.9	15	90	6	65	67	0	6	26	1.15
57417--57533	29	4.0	29	69	8	85	63	2	7	26	1.35
57398--57484	44	2.0	44	82	13	108	65	0	8	26	1.20
57396--57512	15	8.1	14	71	18	62	64	0	7	26	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58719--58755	20	1.9	18	89	10	56	51	0	0	48	1.00

Tables:   1

The End!