Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold741
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19812
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Found at i:10218 original size:42 final size:42
Alignment explanation
Indices: 10167--10452 Score: 432
Period size: 42 Copynumber: 6.8 Consensus size: 42
10157 GTTTACAAAC
* *
10167 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
10209 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
10251 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
* * *
10293 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTGTA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
* * * * *
10334 AAAAATGCCACTAAAGACCATGTTCTTTAGCGGCGCTTTGGA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
* *
10376 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTA-ATG
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGA-A
*
10418 GAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG
10453 TTTTTTTCTA
Statistics
Matches: 225, Mismatches: 17, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
41 36 0.16
42 189 0.84
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.24
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
Found at i:10382 original size:125 final size:125
Alignment explanation
Indices: 10167--10553 Score: 463
Period size: 125 Copynumber: 3.1 Consensus size: 125
10157 GTTTACAAAC
* * * * * *
10167 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGT
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTGTAAAAAATGCCGCTAAAGAACATGT
* *
10232 TCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGA-A
65 TCTTTAGCGGCGCTTTGAAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTA-ATA
* *
10293 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTGTAAAAAATGCCACTAAAGACCATGTT
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTGTAAAAAATGCCGCTAAAGAACATGTT
* *
10358 CTTTAGCGGCGCTTTGGAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAATG
66 CTTTAGCGGCGCTTTGAAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAATA
* * * ****
10418 GAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTTCTAATCGCCGCTAAAGAACATGT
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTGTAAAAAAT-GCCGCTAAAGAACATGT
* * *** * * * *
10483 TCTTTAGTGGC-ATTTTTTACAAACGCCGCAAAAGAACATGTTCTTTAGTGGCGCTTTTATA
65 TCTTTAGCGGCGCTTTGAAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGC-TTAATA
10544 CAAAAACGCC
1 -AAAAACGCC
10554 ACTATTTTTG
Statistics
Matches: 226, Mismatches: 31, Indels: 7
0.86 0.12 0.03
Matches are distributed among these distances:
124 1 0.00
125 155 0.69
126 62 0.27
127 8 0.04
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.27
Consensus pattern (125 bp):
AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTGTAAAAAATGCCGCTAAAGAACATGTT
CTTTAGCGGCGCTTTGAAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAATA
Found at i:10469 original size:42 final size:42
Alignment explanation
Indices: 10167--10553 Score: 424
Period size: 42 Copynumber: 9.2 Consensus size: 42
10157 GTTTACAAAC
* * **
10167 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTTAA
* **
10209 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTTAA
* **
10251 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTTAA
10293 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTGT-A
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTT-TAA
* * * **
10334 AAAAATGCCACTAAAGACCATGTTCTTTAGCGGCGCTTTGGA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTTAA
10376 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGC--TTAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTTAA
* * * **
10416 TGGAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTT
1 --AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTTAA
** * * * **
10460 CTAATCGCCGCTAAAGAACATGTTCTTTAGTGGC-ATTTTTT
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTTAA
* * *
10501 ACAAACGCCGCAAAAGAACATGTTCTTTAGTGGCGCTTTTATA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTTA-A
10544 CAAAAACGCC
1 -AAAAACGCC
10554 ACTATTTTTG
Statistics
Matches: 302, Mismatches: 33, Indels: 18
0.86 0.09 0.05
Matches are distributed among these distances:
40 2 0.01
41 71 0.24
42 219 0.73
44 10 0.03
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.27
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTTAA
Found at i:10539 original size:167 final size:167
Alignment explanation
Indices: 10167--10553 Score: 515
Period size: 167 Copynumber: 2.3 Consensus size: 167
10157 GTTTACAAAC
* * *
10167 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGT
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTTGAAAAAAACGCCGCTAAAGAACATGT
10232 TCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAA
66 TCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAA
*
10297 ACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTGTA
131 ACGCCGCTAAAGAACATGTTCTTTAGCGGCATTTGTA
* * *
10334 AAAAATGCCACTAAAGACCATGTTCTTTAGCGGCGCTTTGGAAAAAACGCCGCTAAAGAACATGT
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTTGAAAAAAACGCCGCTAAAGAACATGT
** * ******
10399 TCTTTAGCGGCGCTTA-ATGGAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTTCTA
66 TCTTTAGCGGCGCTTAGA-AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAA
* * * *
10463 ATCGCCGCTAAAGAACATGTTCTTTAGTGGCATTTTTT
130 AACGCCGCTAAAGAACATGTTCTTTAGCGGCATTTGTA
* * * * *
10501 ACAAACGCCGCAAAAGAACATGTTCTTTAGTGGCGCTTTTATACAAAAACGCC
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTTGA-A-AAAAACGCC
10554 ACTATTTTTG
Statistics
Matches: 189, Mismatches: 28, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
166 1 0.01
167 178 0.94
168 1 0.01
169 9 0.05
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.27
Consensus pattern (167 bp):
AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTTGAAAAAAACGCCGCTAAAGAACATGT
TCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAA
ACGCCGCTAAAGAACATGTTCTTTAGCGGCATTTGTA
Found at i:10628 original size:14 final size:14
Alignment explanation
Indices: 10605--10638 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
10595 GCCCTCCTGT
*
10605 AGCAAAATTTCAAA
1 AGCAACATTTCAAA
10619 AGCAACATTTCAAA
1 AGCAACATTTCAAA
10633 AGCAAC
1 AGCAAC
10639 CAATAGCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.53, C:0.21, G:0.09, T:0.18
Consensus pattern (14 bp):
AGCAACATTTCAAA
Found at i:10930 original size:21 final size:21
Alignment explanation
Indices: 10862--10932 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
10852 TTTTGCTCTG
* *
10862 CTCTGCTTCTCTTGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* *
10883 CTCCGCTTCCCTCGCTGCAGT
1 CTCTGCTTCCCTCGCTGCAGC
* * *
10904 CGCTGCTTCCCTCGCTTCCGC
1 CTCTGCTTCCCTCGCTGCAGC
10925 CTCTGCTT
1 CTCTGCTT
10933 TAAGTTGTAG
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.03, C:0.45, G:0.18, T:0.34
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:12335 original size:26 final size:26
Alignment explanation
Indices: 12267--12370 Score: 151
Period size: 26 Copynumber: 4.1 Consensus size: 26
12257 CGTCCCACCA
** *
12267 TAAGTAATGTATTTTAGTAATAAATT
1 TAAGTAACATATTTAAGTAATAAATT
*
12293 T-A-TAA-TTATTTAAGTAATAAATT
1 TAAGTAACATATTTAAGTAATAAATT
12316 TAAGTAACATATTTAAGTAATAAATT
1 TAAGTAACATATTTAAGTAATAAATT
12342 TAAGTAACATATTTAAGTAATAAATT
1 TAAGTAACATATTTAAGTAATAAATT
12368 TAA
1 TAA
12371 ACAAATTTTA
Statistics
Matches: 72, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
23 17 0.24
24 4 0.06
25 4 0.06
26 47 0.65
ACGTcount: A:0.48, C:0.02, G:0.08, T:0.42
Consensus pattern (26 bp):
TAAGTAACATATTTAAGTAATAAATT
Found at i:12384 original size:49 final size:48
Alignment explanation
Indices: 12277--12384 Score: 139
Period size: 49 Copynumber: 2.2 Consensus size: 48
12267 TAAGTAATGT
* *
12277 ATTTTAGTAATAAATTTATAATTATTTAAGTAATAAATTTAAGTAACAT
1 ATTTTAGTAATAAATTTATAAATATTTAAGTAATAAATTTAAG-AACAA
*
12326 ATTTAAGTAATAAATTTAAGTAACATATTTAAGTAATAAATTT-A-AACAA
1 ATTTTAGTAATAAATTT-A-TAA-ATATTTAAGTAATAAATTTAAGAACAA
12375 ATTTTAGTAA
1 ATTTTAGTAA
12385 GTAATGTATT
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
49 29 0.56
50 1 0.02
51 4 0.08
52 18 0.35
ACGTcount: A:0.49, C:0.03, G:0.06, T:0.42
Consensus pattern (48 bp):
ATTTTAGTAATAAATTTATAAATATTTAAGTAATAAATTTAAGAACAA
Found at i:12397 original size:17 final size:17
Alignment explanation
Indices: 12375--12515 Score: 115
Period size: 17 Copynumber: 7.6 Consensus size: 17
12365 ATTTAAACAA
12375 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
*
12392 ATTTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
12409 AAACAAATTTTAGTAAGTAATGT
1 ------ATTTTAGTAAGTAATGT
12432 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
*
12449 ATTTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
*
12466 AAACAAATTTTAGTAAGTAATTT
1 ------ATTTTAGTAAGTAATGT
12489 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
12506 ATTTTAGTAA
1 ATTTTAGTAA
12516 TAAATTTAAC
Statistics
Matches: 104, Mismatches: 4, Indels: 32
0.74 0.03 0.23
Matches are distributed among these distances:
16 2 0.02
17 71 0.68
23 29 0.28
24 2 0.02
ACGTcount: A:0.41, C:0.01, G:0.12, T:0.45
Consensus pattern (17 bp):
ATTTTAGTAAGTAATGT
Found at i:12401 original size:40 final size:40
Alignment explanation
Indices: 12342--12441 Score: 173
Period size: 40 Copynumber: 2.5 Consensus size: 40
12332 GTAATAAATT
** *
12342 TAAGTAACATATTTAAGTAATAAATTTAAACAAATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
12382 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
12422 TAAGTAATGTATTTTAGTAA
1 TAAGTAATGTATTTTAGTAA
12442 GTAATGTATT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.46, C:0.03, G:0.10, T:0.41
Consensus pattern (40 bp):
TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
Found at i:12447 original size:57 final size:57
Alignment explanation
Indices: 12375--12524 Score: 291
Period size: 57 Copynumber: 2.6 Consensus size: 57
12365 ATTTAAACAA
12375 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGT
*
12432 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATTT
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGT
12489 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAA
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAA
12525 CATTCAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
57 92 1.00
ACGTcount: A:0.42, C:0.01, G:0.11, T:0.45
Consensus pattern (57 bp):
ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGT
Found at i:13871 original size:11 final size:11
Alignment explanation
Indices: 13855--13894 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
13845 GATGATAATA
13855 CATTAGTTACC
1 CATTAGTTACC
13866 CATTAGTTACC
1 CATTAGTTACC
*
13877 CACTAGTTACC
1 CATTAGTTACC
13888 CA-TAGTT
1 CATTAGTT
13895 TGAGATATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
10 5 0.18
11 23 0.82
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.35
Consensus pattern (11 bp):
CATTAGTTACC
Found at i:14977 original size:83 final size:81
Alignment explanation
Indices: 14872--15069 Score: 308
Period size: 84 Copynumber: 2.4 Consensus size: 81
14862 ATTAACACCG
14872 TTTTGTGGCGTTTTTGGTAAAAACGCCACTAAATATTACA-CTGTGAACAGAAACAACACCGTTT
1 TTTTGTGGCGTTTTT-G-AAAAACGCCACTAAATATTACAGCTGTGAACAGAAACAACACCGTTT
14936 TCGTGGTCTGGAATTGCA
64 TCGTGGTCTGGAATTGCA
*
14954 TTTTTTGTGGCGTTTTTAGAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTT
1 --TTTTGTGGCGTTTTT-GAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACAACACCGTT
15019 TTCGTGGTCTGGAATTGCA
63 TTCGTGGTCTGGAATTGCA
* *
15038 TTTTGTGGCATTTTCTTAAAAACGCCACTAAA
1 TTTTGTGGCGTTTT-TGAAAAACGCCACTAAA
15070 AGTTTAACTA
Statistics
Matches: 108, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
82 28 0.26
83 23 0.21
84 57 0.53
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (81 bp):
TTTTGTGGCGTTTTTGAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACAACACCGTTTTC
GTGGTCTGGAATTGCA
Found at i:15468 original size:12 final size:12
Alignment explanation
Indices: 15451--15476 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
15441 TTAAAATAGC
15451 ACGACCTCTTTT
1 ACGACCTCTTTT
15463 ACGACCTCTTTT
1 ACGACCTCTTTT
15475 AC
1 AC
15477 AGTTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.35, G:0.08, T:0.38
Consensus pattern (12 bp):
ACGACCTCTTTT
Found at i:16398 original size:112 final size:112
Alignment explanation
Indices: 16087--16672 Score: 939
Period size: 112 Copynumber: 5.3 Consensus size: 112
16077 AACACCTAGA
* * *
16087 TTAGCGGCGCTTTACAAAAAACGCCACTAA-TGCCCCCCAAAGGACAC-AAACGGCACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
* * * * * ** *
16150 GAGTATTATTTGCGGCATTTTTTATAAGCGCTGCTAATGTTCACTCT
66 GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
16197 TTAGCGGCGCTTTACAATAAACGCCACTAAGT--CCCCCAAAGGCCACAAAACGGCACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
16260 GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
66 GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
**
16307 TTAGCGGCGCTTCGCAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
* *
16372 GTGTATTATTTGCGGCGTTATTTATAAACGCCGCTAATGCTCACTCT
66 GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
*
16419 TTAGCGGCGCTTTACAATAAATGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
16484 GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
66 GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
*
16531 TTAGCGGCGCTTTACAATAAACGCCAAT-AGTCCCCCCCCAAAGGCCACAAAACGGCACCGTCTG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGT-CCCCCCCAAAGGCCACAAAACGGCACCGTCTG
16595 GGTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
65 GGTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
* * **
16643 TTAGCGGCACTTTTCCTTAAACGCCACTAA
1 TTAGCGGCGCTTTACAATAAACGCCACTAA
16673 TGCTCACTCT
Statistics
Matches: 444, Mismatches: 26, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
109 13 0.03
110 114 0.26
111 4 0.01
112 312 0.70
113 1 0.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (112 bp):
TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
Found at i:16664 original size:40 final size:40
Alignment explanation
Indices: 16620--16736 Score: 189
Period size: 40 Copynumber: 2.9 Consensus size: 40
16610 GCGTTATCTA
* **
16620 TAAACGCCACTAATGCTCACTCTTTAGCGGCACTTTTCCT
1 TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTTAAT
16660 TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTTAAT
1 TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTTAAT
* *
16700 TAAACGCCGCTATTGCTCACTCTTTAGCGGCGCTTTT
1 TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTT
16737 GCTCCAAACG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 72 1.00
ACGTcount: A:0.21, C:0.30, G:0.15, T:0.33
Consensus pattern (40 bp):
TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTTAAT
Done.