Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 106 of 207
Found at i:31886228 original size:27 final size:27
Alignment explanation
Indices: 31886197--31886373 Score: 194
Period size: 27 Copynumber: 6.6 Consensus size: 27
31886187 TAAATTGTAC
*
31886197 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
31886224 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
31886250 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
31886278 GGCACTAAGTGTCCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
31886305 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* *
31886332 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
31886359 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
31886374 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
27 127 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:31888239 original size:43 final size:43
Alignment explanation
Indices: 31888150--31888268 Score: 186
Period size: 43 Copynumber: 2.8 Consensus size: 43
31888140 AAAAAATGAT
*
31888150 GCCAATGTCTCAGACAAGGTCTTACACGT-AATCATATACGAC
1 GCCAATGTCTCAGACATGGTCTTACACGTAAATCATATACGAC
* * *
31888192 GCCAATGTCCCAAACATGGTCTTACATGTAAATCATATACGAC
1 GCCAATGTCTCAGACATGGTCTTACACGTAAATCATATACGAC
*
31888235 GCCAATATCTCAGACATGGTCTTACACGTAAATC
1 GCCAATGTCTCAGACATGGTCTTACACGTAAATC
31888269 TCAAATCGGG
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
42 25 0.37
43 43 0.63
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (43 bp):
GCCAATGTCTCAGACATGGTCTTACACGTAAATCATATACGAC
Found at i:31890275 original size:42 final size:43
Alignment explanation
Indices: 31890192--31890277 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 43
31890182 TGTTATCCTA
* * *
31890192 GAAAAAATAATTTAAAAGAGGAAGAAGATAATCTTGGGTTGTT
1 GAAAAAATAATTTAAAAAAGGAAGAAGATAAACTTGCGTTGTT
*
31890235 GAAAAAATAATTTAAAAAAGG-AGAAGCTAAACTTGCGTTGTT
1 GAAAAAATAATTTAAAAAAGGAAGAAGATAAACTTGCGTTGTT
31890277 G
1 G
31890278 GATTTACCCT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
42 19 0.49
43 20 0.51
ACGTcount: A:0.47, C:0.05, G:0.22, T:0.27
Consensus pattern (43 bp):
GAAAAAATAATTTAAAAAAGGAAGAAGATAAACTTGCGTTGTT
Found at i:31893176 original size:29 final size:30
Alignment explanation
Indices: 31893123--31893192 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 30
31893113 ATAGCCGAAG
* * **
31893123 CCATCCTTTTTCATAGTTAGATGGTTGTCA
1 CCATCCCTTTTAATAGTTAGATGGTCATCA
*
31893153 CCATCCCTTTTAATTGTT-GATGGTCATCA
1 CCATCCCTTTTAATAGTTAGATGGTCATCA
*
31893182 CCATCTCTTTT
1 CCATCCCTTTT
31893193 CATAATCAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
29 19 0.56
30 15 0.44
ACGTcount: A:0.19, C:0.24, G:0.13, T:0.44
Consensus pattern (30 bp):
CCATCCCTTTTAATAGTTAGATGGTCATCA
Found at i:31899738 original size:29 final size:29
Alignment explanation
Indices: 31899696--31899754 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
31899686 AGCTTTATAT
31899696 CCTCATTTAATCCATCTTCAAATTGCTTA
1 CCTCATTTAATCCATCTTCAAATTGCTTA
31899725 CCTCATTTAATCCATCTTCAAATTGCTTA
1 CCTCATTTAATCCATCTTCAAATTGCTTA
31899754 C
1 C
31899755 ACATTACACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.27, C:0.29, G:0.03, T:0.41
Consensus pattern (29 bp):
CCTCATTTAATCCATCTTCAAATTGCTTA
Found at i:31901010 original size:32 final size:32
Alignment explanation
Indices: 31900974--31901034 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
31900964 GTCACTTGGT
31900974 CGTGTGTCACAGACAATTGAGACACACGTAGC
1 CGTGTGTCACAGACAATTGAGACACACGTAGC
*
31901006 CGTGTGTCACAGACAGTTGAGACACACGT
1 CGTGTGTCACAGACAATTGAGACACACGT
31901035 CCATGTCTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.26, T:0.20
Consensus pattern (32 bp):
CGTGTGTCACAGACAATTGAGACACACGTAGC
Found at i:31902078 original size:30 final size:29
Alignment explanation
Indices: 31902044--31902292 Score: 145
Period size: 29 Copynumber: 8.4 Consensus size: 29
31902034 TAACCAAAGT
*
31902044 TATCCCTTTTCATAGTTTGACAGTCGAAGC
1 TATCCCTTTTCATA-TTTGATAGTCGAAGC
* * *
31902074 TATCCCTTTTAATAATTTGATGGTCGTTA-C
1 TATCCCTTTTCAT-ATTTGATAGTCG-AAGC
* * * *
31902104 CAT-CCTTTTCCATTGTTTGA-AGGCCGTCA-C
1 TATCCCTTTT-CA-TATTTGATA-GTCG-AAGC
* *
31902134 CATCCCTTTTCATAGTTTGATGGTC-ATTA-C
1 TATCCCTTTTCATA-TTTGATAGTCGA--AGC
* * * * *
31902164 CATCCCTTTTCATAATCGATAGCCAAAGC
1 TATCCCTTTTCATATTTGATAGTCGAAGC
31902193 TATCCCTTTTCATATTTGATAG-CTGAAGC
1 TATCCCTTTTCATATTTGATAGTC-GAAGC
31902222 TATCCCTTTTCATATTTGATAG-CTGAAGC
1 TATCCCTTTTCATATTTGATAGTC-GAAGC
* ** ** *
31902251 TATCCTTTTTCATATTCAATAACCAAAGC
1 TATCCCTTTTCATATTTGATAGTCGAAGC
31902280 TATCCCTTTTCAT
1 TATCCCTTTTCAT
31902293 TCATCGATGA
Statistics
Matches: 177, Mismatches: 28, Indels: 29
0.76 0.12 0.12
Matches are distributed among these distances:
28 2 0.01
29 100 0.56
30 66 0.37
31 9 0.05
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.40
Consensus pattern (29 bp):
TATCCCTTTTCATATTTGATAGTCGAAGC
Found at i:31902122 original size:60 final size:61
Alignment explanation
Indices: 31902045--31902174 Score: 151
Period size: 60 Copynumber: 2.2 Consensus size: 61
31902035 AACCAAAGTT
* * *
31902045 ATCCCTTTT-CATAGTTTGACA-GTCG-AAGCTATCCCTTTTAATAATTTGATGGTCGTTACC
1 ATCCCTTTTCCATAGTTTGA-AGGCCGTAA-CCATCCCTTTTAATAATTTGATGGTCATTACC
* * * *
31902105 AT-CCTTTTCCATTGTTTGAAGGCCGTCACCATCCCTTTTCATAGTTTGATGGTCATTACC
1 ATCCCTTTTCCATAGTTTGAAGGCCGTAACCATCCCTTTTAATAATTTGATGGTCATTACC
31902165 ATCCCTTTTC
1 ATCCCTTTTC
31902175 ATAATCGATA
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
59 7 0.12
60 44 0.75
61 8 0.14
ACGTcount: A:0.20, C:0.25, G:0.14, T:0.41
Consensus pattern (61 bp):
ATCCCTTTTCCATAGTTTGAAGGCCGTAACCATCCCTTTTAATAATTTGATGGTCATTACC
Found at i:31902213 original size:29 final size:29
Alignment explanation
Indices: 31902165--31902292 Score: 166
Period size: 29 Copynumber: 4.4 Consensus size: 29
31902155 GGTCATTACC
*
31902165 ATCCCTTTTCATAATCGATAGCCAAAGCT
1 ATCCCTTTTCATATTCGATAGCCAAAGCT
* **
31902194 ATCCCTTTTCATATTTGATAGCTGAAGCT
1 ATCCCTTTTCATATTCGATAGCCAAAGCT
* **
31902223 ATCCCTTTTCATATTTGATAGCTGAAGCT
1 ATCCCTTTTCATATTCGATAGCCAAAGCT
* * *
31902252 ATCCTTTTTCATATTCAATAACCAAAGCT
1 ATCCCTTTTCATATTCGATAGCCAAAGCT
31902281 ATCCCTTTTCAT
1 ATCCCTTTTCAT
31902293 TCATCGATGA
Statistics
Matches: 88, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 88 1.00
ACGTcount: A:0.27, C:0.24, G:0.09, T:0.39
Consensus pattern (29 bp):
ATCCCTTTTCATATTCGATAGCCAAAGCT
Found at i:31904372 original size:56 final size:56
Alignment explanation
Indices: 31904281--31904403 Score: 176
Period size: 55 Copynumber: 2.2 Consensus size: 56
31904271 GAGATTGGCG
* * *
31904281 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAG-TTGATTATATAGCA
* *
31904338 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
*
31904393 CTGAGTGTGCG
1 CTAAGTGTGCG
31904404 GACTTAATAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
55 23 0.38
56 22 0.37
57 15 0.25
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
Found at i:31904390 original size:27 final size:28
Alignment explanation
Indices: 31904281--31904403 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
31904271 GAGATTGGCG
* * * *
31904281 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
31904310 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
31904338 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
31904366 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
31904393 CTGAGTGTGCG
1 CTAAGTGTGCG
31904404 GACTTAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.28
28 48 0.55
29 15 0.17
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:31904414 original size:27 final size:27
Alignment explanation
Indices: 31904306--31904416 Score: 116
Period size: 28 Copynumber: 4.0 Consensus size: 27
31904296 TAAATTGTAC
* * *
31904306 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
31904334 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
31904362 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
31904389 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
31904416 A
1 A
31904417 CTTTTGAATC
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
27 30 0.39
28 47 0.61
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:31912569 original size:56 final size:56
Alignment explanation
Indices: 31912478--31912600 Score: 176
Period size: 55 Copynumber: 2.2 Consensus size: 56
31912468 GAGATTGGCG
* * *
31912478 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAG-TTGATTATATAGCA
* *
31912535 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
*
31912590 CTGAGTGTGCG
1 CTAAGTGTGCG
31912601 GACTTAATAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
55 23 0.38
56 22 0.37
57 15 0.25
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
Found at i:31912587 original size:27 final size:28
Alignment explanation
Indices: 31912478--31912600 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
31912468 GAGATTGGCG
* * * *
31912478 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
31912507 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
31912535 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
31912563 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
31912590 CTGAGTGTGCG
1 CTAAGTGTGCG
31912601 GACTTAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.28
28 48 0.55
29 15 0.17
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:31912611 original size:27 final size:27
Alignment explanation
Indices: 31912503--31912613 Score: 116
Period size: 28 Copynumber: 4.0 Consensus size: 27
31912493 TAAATTGTAC
* * *
31912503 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
31912531 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
31912559 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
31912586 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
31912613 A
1 A
31912614 CTTTTGAATC
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
27 30 0.39
28 47 0.61
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:31917133 original size:29 final size:29
Alignment explanation
Indices: 31917099--31917314 Score: 204
Period size: 29 Copynumber: 7.4 Consensus size: 29
31917089 AGCTATCGAT
*
31917099 TATGAAAAGGGATGGTGACGACCATCAAG
1 TATGAAAAGGGATGGTGACGACCATCAAC
* * * * * * *
31917128 TTTGAAAAGGTATAGCT-TCGGCTATCAAA
1 TATGAAAAGGGAT-GGTGACGACCATCAAC
* * * * *
31917157 TATGAAAAGGGATAGCT-TCGACTATCGAT
1 TATGAAAAGGGAT-GGTGACGACCATCAAC
*
31917186 TATGAAAATGGATGGTGACGACCATCAAC
1 TATGAAAAGGGATGGTGACGACCATCAAC
31917215 TATGAAAAGGGATGGTGACGACCATCAAC
1 TATGAAAAGGGATGGTGACGACCATCAAC
* * * *
31917244 TATGAAAAGGGATAGCT-TCGACTATCGAC
1 TATGAAAAGGGAT-GGTGACGACCATCAAC
* *
31917273 TATGAAAAGGGATGGTGACAACCATCGAC
1 TATGAAAAGGGATGGTGACGACCATCAAC
31917302 TATGAAAAGGGAT
1 TATGAAAAGGGAT
31917315 AGCTTCATCG
Statistics
Matches: 156, Mismatches: 27, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
28 4 0.03
29 148 0.95
30 4 0.03
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.22
Consensus pattern (29 bp):
TATGAAAAGGGATGGTGACGACCATCAAC
Found at i:31917162 original size:58 final size:58
Alignment explanation
Indices: 31917071--31917320 Score: 281
Period size: 58 Copynumber: 4.3 Consensus size: 58
31917061 CCCTCAGATA
* * *
31917071 ATGAAAAGGGATAGCTTC-AGCTATCGATTATGAAAAGGGATGGTGACGACCATCAAGT
1 ATGAAAAGGGATAGCTTCGA-CTATCAACTATGAAAAGGGATGGTGACGACCATCAACT
* * * * * * * * *
31917129 TTGAAAAGGTATAGCTTCGGCTATCAAATATGAAAAGGGATAGCT-TCGACTATCGATT
1 ATGAAAAGGGATAGCTTCGACTATCAACTATGAAAAGGGAT-GGTGACGACCATCAACT
* * * *
31917187 ATGAAAATGGAT-GGTGACGACCATCAACTATGAAAAGGGATGGTGACGACCATCAACT
1 ATGAAAAGGGATAGCT-TCGACTATCAACTATGAAAAGGGATGGTGACGACCATCAACT
* * *
31917245 ATGAAAAGGGATAGCTTCGACTATCGACTATGAAAAGGGATGGTGACAACCATCGACT
1 ATGAAAAGGGATAGCTTCGACTATCAACTATGAAAAGGGATGGTGACGACCATCAACT
31917303 ATGAAAAGGGATAGCTTC
1 ATGAAAAGGGATAGCTTC
31917321 ATCGACTATG
Statistics
Matches: 157, Mismatches: 30, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
57 4 0.03
58 149 0.95
59 4 0.03
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.23
Consensus pattern (58 bp):
ATGAAAAGGGATAGCTTCGACTATCAACTATGAAAAGGGATGGTGACGACCATCAACT
Found at i:31917221 original size:87 final size:87
Alignment explanation
Indices: 31917071--31917320 Score: 360
Period size: 87 Copynumber: 2.9 Consensus size: 87
31917061 CCCTCAGATA
* *
31917071 ATGAAAAGGGATAGCTTC-AGCTATCGATTATGAAAAGGGATGGTGACGACCATCAAGTTTGAAA
1 ATGAAAAGGGATAGCTTCGA-CTATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAA
* * *
31917135 AGGTATAGCTTCGGCTATCAAAT
65 AGGGATAGCTTCGACCATCAAAT
*
31917158 ATGAAAAGGGATAGCTTCGACTATCGATTATGAAAATGGATGGTGACGACCATCAACTATGAAAA
1 ATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAA
* * *
31917223 GGGAT-GGTGACGACCATCAACT
66 GGGATAGCT-TCGACCATCAAAT
* * *
31917245 ATGAAAAGGGATAGCTTCGACTATCGACTATGAAAAGGGATGGTGACAACCATCGACTATGAAAA
1 ATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAA
31917310 GGGATAGCTTC
66 GGGATAGCTTC
31917321 ATCGACTATG
Statistics
Matches: 145, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
86 2 0.01
87 140 0.97
88 3 0.02
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.23
Consensus pattern (87 bp):
ATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAA
GGGATAGCTTCGACCATCAAAT
Found at i:31921479 original size:25 final size:25
Alignment explanation
Indices: 31921444--31921570 Score: 107
Period size: 25 Copynumber: 5.1 Consensus size: 25
31921434 TGACCCACAA
*
31921444 CTCATGTGAGCATACCAATTTACAG
1 CTCATGTGAGCATACCGATTTACAG
* * *
31921469 CTCATGAGAGCATACTGATCTACAG
1 CTCATGTGAGCATACCGATTTACAG
* * *
31921494 CTCGTGTGAGCATA--AATATTATAG
1 CTCATGTGAGCATACCGAT-TTACAG
* * * *
31921518 GTCGTGAGAGCATACCGATCTACAG
1 CTCATGTGAGCATACCGATTTACAG
*
31921543 CTCGA-GTGAGCATACCGATTCACAG
1 CTC-ATGTGAGCATACCGATTTACAG
31921568 CTC
1 CTC
31921571 GTATAAGCAT
Statistics
Matches: 79, Mismatches: 19, Indels: 8
0.75 0.18 0.08
Matches are distributed among these distances:
23 2 0.03
24 16 0.20
25 59 0.75
26 2 0.03
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25
Consensus pattern (25 bp):
CTCATGTGAGCATACCGATTTACAG
Found at i:31921579 original size:25 final size:25
Alignment explanation
Indices: 31921526--31921582 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
31921516 AGGTCGTGAG
*
31921526 AGCATACCGATCTACAGCTCGAGTG
1 AGCATACCGATCTACAGCTCGAGTA
31921551 AGCATACCGAT-TCACAGCTCGTA-TA
1 AGCATACCGATCT-ACAGCTCG-AGTA
31921576 AGCATAC
1 AGCATAC
31921583 ATGTACAAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 1 0.03
25 27 0.93
26 1 0.03
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.21
Consensus pattern (25 bp):
AGCATACCGATCTACAGCTCGAGTA
Found at i:31922372 original size:14 final size:14
Alignment explanation
Indices: 31922353--31922381 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
31922343 TTTGTAAGAT
31922353 TATGGTTTCATGAA
1 TATGGTTTCATGAA
31922367 TATGGTTTCATGAA
1 TATGGTTTCATGAA
31922381 T
1 T
31922382 CTTACGATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.45
Consensus pattern (14 bp):
TATGGTTTCATGAA
Found at i:31931755 original size:25 final size:25
Alignment explanation
Indices: 31931721--31931815 Score: 93
Period size: 25 Copynumber: 3.8 Consensus size: 25
31931711 GCAGACACAC
* *
31931721 TACAGCTCGT-ATGAGCTTACCTATT
1 TACAGCTCGTGA-GAGCATACCGATT
31931746 TACAGCTCGTGAGAGCATACCGATT
1 TACAGCTCGTGAGAGCATACCGATT
* ** *
31931771 TGCAGCTCAAGAAAGCATACCGATT
1 TACAGCTCGTGAGAGCATACCGATT
* * *
31931796 CACAGCTTGTGTGAGCATAC
1 TACAGCTCGTGAGAGCATAC
31931816 ATGTACTAGA
Statistics
Matches: 56, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
25 55 0.98
26 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.26
Consensus pattern (25 bp):
TACAGCTCGTGAGAGCATACCGATT
Found at i:31938182 original size:67 final size:67
Alignment explanation
Indices: 31938103--31938236 Score: 225
Period size: 67 Copynumber: 2.0 Consensus size: 67
31938093 AAAACTTATC
* *
31938103 GAGTCTGTTTTCACATGAAAGAAACAATGTGGGCAAA-GAAATTACATATTATGAGATATTTGAA
1 GAGTCTGTTTTCACATGAAAGAAACAATGTAGGAAAATG-AATTACATATTATGAGATATTTGAA
31938167 TTT
65 TTT
*
31938170 GAGTCTGTTTTCACATGAAAGAAACAATGTAGGAAAATGAATTATATATTATGAGATATTTGAAT
1 GAGTCTGTTTTCACATGAAAGAAACAATGTAGGAAAATGAATTACATATTATGAGATATTTGAAT
31938235 TT
66 TT
31938237 TAGTGAGATA
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
67 62 0.98
68 1 0.02
ACGTcount: A:0.40, C:0.07, G:0.19, T:0.34
Consensus pattern (67 bp):
GAGTCTGTTTTCACATGAAAGAAACAATGTAGGAAAATGAATTACATATTATGAGATATTTGAAT
TT
Found at i:31949913 original size:14 final size:14
Alignment explanation
Indices: 31949894--31949921 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
31949884 CCAATTTATT
31949894 AATGAATTATTAAA
1 AATGAATTATTAAA
31949908 AATGAATTATTAAA
1 AATGAATTATTAAA
31949922 TATAACTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (14 bp):
AATGAATTATTAAA
Found at i:31975980 original size:15 final size:16
Alignment explanation
Indices: 31975954--31975988 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
31975944 ATTTATAAAT
31975954 TTTAATATTGATAGTA
1 TTTAATATTGATAGTA
*
31975970 TTTAA-ATTGATATTA
1 TTTAATATTGATAGTA
31975985 TTTA
1 TTTA
31975989 TAAATTTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.37, C:0.00, G:0.09, T:0.54
Consensus pattern (16 bp):
TTTAATATTGATAGTA
Found at i:31976883 original size:14 final size:15
Alignment explanation
Indices: 31976853--31976886 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
31976843 CTGTTTAGGG
*
31976853 TTTCATTTCTATCCA
1 TTTCATTGCTATCCA
31976868 TTTCATTGCT-TCCA
1 TTTCATTGCTATCCA
31976882 TTTCA
1 TTTCA
31976887 CTTTTCTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.18, C:0.26, G:0.03, T:0.53
Consensus pattern (15 bp):
TTTCATTGCTATCCA
Found at i:31978623 original size:17 final size:17
Alignment explanation
Indices: 31978603--31978695 Score: 83
Period size: 17 Copynumber: 5.9 Consensus size: 17
31978593 TTATTTTCTA
31978603 TATAAGTTTTCTAAATT
1 TATAAGTTTTCTAAATT
31978620 TATAAGTTTTCT-AA--
1 TATAAGTTTTCTAAATT
*
31978634 -ATAATTTTTCTAAATT
1 TATAAGTTTTCTAAATT
* * *
31978650 TATTAGTATT-AAAATT
1 TATAAGTTTTCTAAATT
* *
31978666 TATCAG-TAT-TAAATT
1 TATAAGTTTTCTAAATT
31978681 TATAAGTTTTCTAAA
1 TATAAGTTTTCTAAA
31978696 AAAGTGTTCT
Statistics
Matches: 59, Mismatches: 11, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
13 10 0.17
14 2 0.03
15 11 0.19
16 14 0.24
17 22 0.37
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.51
Consensus pattern (17 bp):
TATAAGTTTTCTAAATT
Found at i:31978631 original size:30 final size:30
Alignment explanation
Indices: 31978596--31978713 Score: 107
Period size: 30 Copynumber: 3.9 Consensus size: 30
31978586 TATTGTTTTA
*
31978596 TTTTCTATATAAGTTTTCTAAATTTATAAG
1 TTTTCTAAATAAGTTTTCTAAATTTATAAG
* *
31978626 TTTTCTAAATAATTTTTCTAAATTTATTAG
1 TTTTCTAAATAAGTTTTCTAAATTTATAAG
* * *
31978656 TATT-AAAATTTATCAG-TAT-TAAATTTATAAG
1 TTTTCTAAA--TA--AGTTTTCTAAATTTATAAG
* *
31978687 TTTTCTAAAAAAGTGTTCTAAATTTAT
1 TTTTCTAAATAAGTTTTCTAAATTTAT
31978714 TATTAATAAA
Statistics
Matches: 68, Mismatches: 13, Indels: 14
0.72 0.14 0.15
Matches are distributed among these distances:
28 2 0.03
29 4 0.06
30 40 0.59
31 16 0.24
32 5 0.07
33 1 0.01
ACGTcount: A:0.37, C:0.06, G:0.06, T:0.51
Consensus pattern (30 bp):
TTTTCTAAATAAGTTTTCTAAATTTATAAG
Found at i:31978646 original size:13 final size:13
Alignment explanation
Indices: 31978596--31978648 Score: 52
Period size: 13 Copynumber: 3.8 Consensus size: 13
31978586 TATTGTTTTA
*
31978596 TTTTCTATATAAG
1 TTTTCTAAATAAG
31978609 TTTTCTAAATTTATAAG
1 TTTTCT-AA---ATAAG
*
31978626 TTTTCTAAATAAT
1 TTTTCTAAATAAG
31978639 TTTTCTAAAT
1 TTTTCTAAAT
31978649 TTATTAGTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
13 20 0.59
14 1 0.03
16 2 0.06
17 11 0.32
ACGTcount: A:0.34, C:0.08, G:0.04, T:0.55
Consensus pattern (13 bp):
TTTTCTAAATAAG
Found at i:31978679 original size:15 final size:15
Alignment explanation
Indices: 31978644--31978683 Score: 62
Period size: 16 Copynumber: 2.6 Consensus size: 15
31978634 ATAATTTTTC
*
31978644 TAAATTTATTAGTAT
1 TAAATTTATCAGTAT
31978659 TAAAATTTATCAGTAT
1 T-AAATTTATCAGTAT
31978675 TAAATTTAT
1 TAAATTTAT
31978684 AAGTTTTCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.39
16 14 0.61
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (15 bp):
TAAATTTATCAGTAT
Found at i:31978686 original size:61 final size:61
Alignment explanation
Indices: 31978614--31978761 Score: 215
Period size: 61 Copynumber: 2.4 Consensus size: 61
31978604 ATAAGTTTTC
* * *
31978614 TAAATTTATAAGTTTTCTAAATAATTTTTCTAAATTTATTAGTATTAAAATTTATCAGTAT
1 TAAATTTATAAGTTTTCTAAATAATTGTTCTAAATTTATTAGTAATAAAATTTATAAGTAT
* * *
31978675 TAAATTTATAAGTTTTCTAAAAAAGTGTTCTAAATTTATTATTAATAAAATTTATAAGTAT
1 TAAATTTATAAGTTTTCTAAATAATTGTTCTAAATTTATTAGTAATAAAATTTATAAGTAT
* * *
31978736 CAATTTTATAATTTTTCTAAATAATT
1 TAAATTTATAAGTTTTCTAAATAATT
31978762 ATATATTTTT
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
61 76 1.00
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (61 bp):
TAAATTTATAAGTTTTCTAAATAATTGTTCTAAATTTATTAGTAATAAAATTTATAAGTAT
Found at i:31978956 original size:21 final size:21
Alignment explanation
Indices: 31978930--31979006 Score: 68
Period size: 21 Copynumber: 3.7 Consensus size: 21
31978920 TAACATAATA
* *
31978930 CATAACTTATAT-ATAAGCTTG
1 CATAACTTACATAATAA-CTTC
31978951 CATAACTTACATAATAACTTC
1 CATAACTTACATAATAACTTC
** *
31978972 CATAACTTA-ATACACCACTTA
1 CATAACTTACATA-ATAACTTC
*
31978993 AATAACTTACATAA
1 CATAACTTACATAA
31979007 CTTACATAGC
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
20 3 0.06
21 37 0.79
22 7 0.15
ACGTcount: A:0.44, C:0.21, G:0.03, T:0.32
Consensus pattern (21 bp):
CATAACTTACATAATAACTTC
Found at i:31979006 original size:9 final size:9
Alignment explanation
Indices: 31978988--31979472 Score: 167
Period size: 9 Copynumber: 56.3 Consensus size: 9
31978978 TTAATACACC
*
31978988 ACTTAAATA
1 ACTTACATA
31978997 ACTTACATA
1 ACTTACATA
31979006 ACTTACATA
1 ACTTACATA
*
31979015 GCTTACATA
1 ACTTACATA
*
31979024 AC-T-CATT
1 ACTTACATA
31979031 ACTTACATA
1 ACTTACATA
*
31979040 ACATACATA
1 ACTTACATA
31979049 A--TACATA
1 ACTTACATA
*
31979056 ACATACATA
1 ACTTACATA
**
31979065 AAATAC--A
1 ACTTACATA
31979072 ACTTACATA
1 ACTTACATA
*
31979081 TCTTACATA
1 ACTTACATA
31979090 A--TACATA
1 ACTTACATA
*
31979097 ACTTACAGA
1 ACTTACATA
* *
31979106 AATTAAATA
1 ACTTACATA
* *
31979115 ACCTGCATA
1 ACTTACATA
*
31979124 A--AACATA
1 ACTTACATA
* *
31979131 GCCTACATA
1 ACTTACATA
*
31979140 ACTTATATA
1 ACTTACATA
*
31979149 ACTTTCATA
1 ACTTACATA
**
31979158 AAGTAC--A
1 ACTTACATA
31979165 ACTTACATA
1 ACTTACATA
**
31979174 TTTTACATAAA
1 ACTTACAT--A
31979185 ACTTACATA
1 ACTTACATA
31979194 A--TACATA
1 ACTTACATA
*
31979201 ACTTAC-TT
1 ACTTACATA
**
31979209 ACATAATACAGC
1 AC-T--TACATA
*
31979221 ACTTACACA
1 ACTTACATA
*
31979230 ACTTAAATA
1 ACTTACATA
*
31979239 ACTTGCATA
1 ACTTACATA
31979248 A--TACATA
1 ACTTACATA
31979255 GAC-TACATA
1 -ACTTACATA
*
31979264 ACTTA-ATTTG
1 ACTTACA--TA
*
31979274 CCTTACATA
1 ACTTACATA
31979283 A--TACA-A
1 ACTTACATA
*
31979289 CACTTACACA
1 -ACTTACATA
*
31979299 ACTTAAATA
1 ACTTACATA
*
31979308 ACTTGCATA
1 ACTTACATA
*
31979317 A--TACAGA
1 ACTTACATA
* *
31979324 GCCTACATA
1 ACTTACATA
*
31979333 ACTTA-ATTTG
1 ACTTACA--TA
*
31979343 CCTTACATA
1 ACTTACATA
**
31979352 A--TACAGC
1 ACTTACATA
31979359 ACTTACATA
1 ACTTACATA
31979368 ACTTACATA
1 ACTTACATA
**
31979377 GGTTACATA
1 ACTTACATA
31979386 A--TACATA
1 ACTTACATA
31979393 ACTTA-ATTA
1 ACTTACA-TA
*
31979402 ACTTATATA
1 ACTTACATA
31979411 A--TACATA
1 ACTTACATA
31979418 ACTTACATA
1 ACTTACATA
* *
31979427 ATTTACTTA
1 ACTTACATA
31979436 A--TACATA
1 ACTTACATA
* *
31979443 A-ATATATA
1 ACTTACATA
* *
31979451 TCATATCATA
1 ACTTA-CATA
31979461 ACTTACATA
1 ACTTACATA
31979470 ACT
1 ACT
31979473 CATTTAATTT
Statistics
Matches: 349, Mismatches: 81, Indels: 92
0.67 0.16 0.18
Matches are distributed among these distances:
6 1 0.00
7 78 0.22
8 16 0.05
9 221 0.63
10 18 0.05
11 13 0.04
12 2 0.01
ACGTcount: A:0.45, C:0.20, G:0.03, T:0.32
Consensus pattern (9 bp):
ACTTACATA
Found at i:31979037 original size:16 final size:17
Alignment explanation
Indices: 31978997--31979103 Score: 75
Period size: 16 Copynumber: 6.4 Consensus size: 17
31978987 CACTTAAATA
31978997 ACTTACATAACTTACAT
1 ACTTACATAACTTACAT
31979014 AGCTTACATAAC-T-CATT
1 A-CTTACATAACTTACA-T
*
31979031 ACTTACATAACATACAT
1 ACTTACATAACTTACAT
* *
31979048 A-ATACATAACATACAT
1 ACTTACATAACTTACAT
**
31979064 AAAATAC--AACTTACAT
1 -ACTTACATAACTTACAT
31979080 ATCTTACATAA--TACAT
1 A-CTTACATAACTTACAT
31979096 AACTTACA
1 -ACTTACA
31979104 GAAATTAAAT
Statistics
Matches: 76, Mismatches: 4, Indels: 21
0.75 0.04 0.21
Matches are distributed among these distances:
15 1 0.01
16 48 0.63
17 9 0.12
18 18 0.24
ACGTcount: A:0.47, C:0.21, G:0.01, T:0.31
Consensus pattern (17 bp):
ACTTACATAACTTACAT
Found at i:31979099 original size:25 final size:26
Alignment explanation
Indices: 31978994--31979103 Score: 99
Period size: 25 Copynumber: 4.4 Consensus size: 26
31978984 CACCACTTAA
*
31978994 ATAACTTACATAACTTACATAGCTTAC
1 ATAACTTACATAACTTACATA-CATAC
*
31979021 ATAAC-T-CATTACTTACATAACATAC
1 ATAACTTACATAACTTACAT-ACATAC
* *
31979046 ATAA--TACATAACATACATAAAATAC
1 ATAACTTACATAACTTACAT-ACATAC
*
31979071 --AACTTACATATCTTACATA-ATAC
1 ATAACTTACATAACTTACATACATAC
31979094 ATAACTTACA
1 ATAACTTACA
31979104 GAAATTAAAT
Statistics
Matches: 70, Mismatches: 7, Indels: 14
0.77 0.08 0.15
Matches are distributed among these distances:
23 6 0.09
24 2 0.03
25 55 0.79
26 2 0.03
27 5 0.07
ACGTcount: A:0.47, C:0.21, G:0.01, T:0.31
Consensus pattern (26 bp):
ATAACTTACATAACTTACATACATAC
Found at i:31979224 original size:20 final size:20
Alignment explanation
Indices: 31979185--31979226 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
31979175 TTTACATAAA
*
31979185 ACTTACATAATACATAACTT
1 ACTTACATAATACAGAACTT
*
31979205 ACTTACATAATACAGCACTT
1 ACTTACATAATACAGAACTT
31979225 AC
1 AC
31979227 ACAACTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.43, C:0.24, G:0.02, T:0.31
Consensus pattern (20 bp):
ACTTACATAATACAGAACTT
Found at i:31979250 original size:34 final size:34
Alignment explanation
Indices: 31979205--31979390 Score: 171
Period size: 34 Copynumber: 5.4 Consensus size: 34
31979195 TACATAACTT
*
31979205 ACTTACATAATACAGCACTTACACAACTTAAATA
1 ACTTACATAATACAGCACTTACATAACTTAAATA
* * *
31979239 ACTTGCATAATACATAG-AC-TACATAACTTAATTTG
1 ACTTACATAATAC--AGCACTTACATAACTTAA-ATA
* * *
31979274 CCTTACATAATACAACACTTACACAACTTAAATA
1 ACTTACATAATACAGCACTTACATAACTTAAATA
* * * *
31979308 ACTTGCATAATACAG-AGCCTACATAACTTAATTTG
1 ACTTACATAATACAGCA-CTTACATAACTTAA-ATA
* *
31979343 CCTTACATAATACAGCACTTACATAACTTACATA
1 ACTTACATAATACAGCACTTACATAACTTAAATA
**
31979377 GGTTACATAATACA
1 ACTTACATAATACA
31979391 TAACTTAATT
Statistics
Matches: 119, Mismatches: 25, Indels: 16
0.74 0.16 0.10
Matches are distributed among these distances:
33 2 0.02
34 63 0.53
35 51 0.43
36 3 0.03
ACGTcount: A:0.42, C:0.22, G:0.06, T:0.30
Consensus pattern (34 bp):
ACTTACATAATACAGCACTTACATAACTTAAATA
Found at i:31979286 original size:35 final size:35
Alignment explanation
Indices: 31979206--31979372 Score: 148
Period size: 35 Copynumber: 4.8 Consensus size: 35
31979196 ACATAACTTA
* * **
31979206 CTTACATAATAC-AGCACTTACACAACTTAA-ATAA
1 CTTACATAATACAAG-ACTTACATAACTTAATTTGC
*
31979240 CTTGCATAATACATAGAC-TACATAACTTAATTTGC
1 CTTACATAATACA-AGACTTACATAACTTAATTTGC
* * * **
31979275 CTTACATAATACAACACTTACACAACTTAA-ATAA
1 CTTACATAATACAAGACTTACATAACTTAATTTGC
* *
31979309 CTTGCATAATAC-AGAGCCTACATAACTTAATTTGC
1 CTTACATAATACAAGA-CTTACATAACTTAATTTGC
31979344 CTTACATAATAC-AGCACTTACATAACTTA
1 CTTACATAATACAAG-ACTTACATAACTTA
31979373 CATAGGTTAC
Statistics
Matches: 106, Mismatches: 20, Indels: 13
0.76 0.14 0.09
Matches are distributed among these distances:
33 2 0.02
34 49 0.46
35 52 0.49
36 3 0.03
ACGTcount: A:0.42, C:0.23, G:0.05, T:0.30
Consensus pattern (35 bp):
CTTACATAATACAAGACTTACATAACTTAATTTGC
Found at i:31979287 original size:69 final size:69
Alignment explanation
Indices: 31979206--31979392 Score: 302
Period size: 69 Copynumber: 2.7 Consensus size: 69
31979196 ACATAACTTA
31979206 CTTACATAATACAGCACTTACACAACTTAAATAACTTGCATAATACATAGACTACATAACTTAAT
1 CTTACATAATACAGCACTTACACAACTTAAATAACTTGCATAATACATAGACTACATAACTTAAT
31979271 TTGC
66 TTGC
* * *
31979275 CTTACATAATACAACACTTACACAACTTAAATAACTTGCATAATACAGAGCCTACATAACTTAAT
1 CTTACATAATACAGCACTTACACAACTTAAATAACTTGCATAATACATAGACTACATAACTTAAT
31979340 TTGC
66 TTGC
* * ** *
31979344 CTTACATAATACAGCACTTACATAACTTACATAGGTTACATAATACATA
1 CTTACATAATACAGCACTTACACAACTTAAATAACTTGCATAATACATA
31979393 ACTTAATTAA
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
69 108 1.00
ACGTcount: A:0.42, C:0.22, G:0.06, T:0.30
Consensus pattern (69 bp):
CTTACATAATACAGCACTTACACAACTTAAATAACTTGCATAATACATAGACTACATAACTTAAT
TTGC
Found at i:31979390 original size:25 final size:25
Alignment explanation
Indices: 31979362--31979443 Score: 103
Period size: 25 Copynumber: 3.3 Consensus size: 25
31979352 ATACAGCACT
**
31979362 TACATAACTTACATAGGTTACATAA
1 TACATAACTTACATAACTTACATAA
*
31979387 TACATAACTTA-ATTAACTTATATAA
1 TACATAACTTACA-TAACTTACATAA
* *
31979412 TACATAACTTACATAATTTACTTAA
1 TACATAACTTACATAACTTACATAA
31979437 TACATAA
1 TACATAA
31979444 ATATATATCA
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
24 1 0.02
25 47 0.96
26 1 0.02
ACGTcount: A:0.46, C:0.15, G:0.02, T:0.37
Consensus pattern (25 bp):
TACATAACTTACATAACTTACATAA
Found at i:31982482 original size:40 final size:40
Alignment explanation
Indices: 31982423--31982634 Score: 248
Period size: 40 Copynumber: 5.3 Consensus size: 40
31982413 CATTTGAATG
* *
31982423 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
31982463 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * *
31982503 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * * * * *
31982543 TTATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
31982583 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
31982623 ATATCC-GGCTAA
1 ATATCCGGGCTAA
31982635 ATTCCGAAGA
Statistics
Matches: 140, Mismatches: 30, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
39 8 0.06
40 130 0.93
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:31982563 original size:80 final size:79
Alignment explanation
Indices: 31982427--31982643 Score: 310
Period size: 80 Copynumber: 2.7 Consensus size: 79
31982417 TGAATGATAT
* *
31982427 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCC-GGCTAAGATCCGAAGGCATTTG
* *
31982492 TGCGAGTTGCTATAC
65 TGCGAGTTACTAAAC
*
31982507 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGG-CTAAGATCCGAAGGCATTTG
*
31982572 TGCGAGTTACTAAAT
65 TGCGAGTTACTAAAC
* * * *
31982587 CCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTTATATCCGGCTAA-ATTCCGAAG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGCTAAGA-TCCGAAG
31982644 AAACTTGGGT
Statistics
Matches: 124, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 13 0.10
80 110 0.89
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGCTAAGATCCGAAGGCATTTGT
GCGAGTTACTAAAC
Found at i:31988299 original size:66 final size:65
Alignment explanation
Indices: 31988209--31988361 Score: 218
Period size: 66 Copynumber: 2.3 Consensus size: 65
31988199 TAAAATGGAG
* *
31988209 GCAGCATCGAGAGAAGCTGAGGTTCAA-AAAAGATATGAAGAACTCCATCTACAACTTAAAGCAG
1 GCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAG-TATGAAGAACTCCAGC-ACAACTTAAAGCAG
31988273 AT
64 AT
* * *
31988275 GCAGCAGCGAGAGAAGCTGAGGTTCAACGAAAGTATGAAGAACTCCAGCGCAGCTTAAAGCAGAT
1 GCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCAGCACAACTTAAAGCAGAT
* *
31988340 GCGGCAGCGAGAGAAGCAGAGG
1 GCAGCAGCGAGAGAAGCTGAGG
31988362 CTGCAGTGAG
Statistics
Matches: 79, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
65 34 0.43
66 41 0.52
67 4 0.05
ACGTcount: A:0.39, C:0.19, G:0.29, T:0.14
Consensus pattern (65 bp):
GCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCAGCACAACTTAAAGCAGAT
Found at i:31988357 original size:21 final size:21
Alignment explanation
Indices: 31988332--31988402 Score: 97
Period size: 21 Copynumber: 3.4 Consensus size: 21
31988322 GCGCAGCTTA
* * *
31988332 AAGCAGATGCGGCAGCGAGAG
1 AAGCAGAGGCTGCAGCGAGGG
*
31988353 AAGCAGAGGCTGCAGTGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
*
31988374 AAGTAGAGGCTGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
31988395 AAGCAGAG
1 AAGCAGAG
31988403 CAGCGTAGAA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.32, C:0.15, G:0.45, T:0.07
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGGG
Found at i:31988807 original size:43 final size:42
Alignment explanation
Indices: 31988728--31988980 Score: 181
Period size: 43 Copynumber: 5.9 Consensus size: 42
31988718 CAAAATTTTC
* * * *
31988728 AAAAACGCCACTAAAGGTCATGGTCATTT-GCGGCGTTTGTAGA
1 AAAAGCGCCGCTAAAGATCA-GGTC-TTTAGCGGCGTTTGTAGT
* * *
31988771 AAAAGCGACGCTAAAGATCAGAGTCTTTAGCAGCGTTTGT-TT
1 AAAAGCGCCGCTAAAGATCAG-GTCTTTAGCGGCGTTTGTAGT
* * * * *
31988813 GGAAAGCGCCGCTAAAGGTCATTGTCTTTAGTGGCGTTTTTCA-T
1 -AAAAGCGCCGCTAAAGATCA-GGTCTTTAGCGGCGTTTGT-AGT
* * *
31988857 ATAAGCGCTGCTAAA-AGTCATGGTCTTTAGCGGCGTTTGTCGT
1 AAAAGCGCCGCTAAAGA-TCA-GGTCTTTAGCGGCGTTTGTAGT
* ** * *
31988900 AAAAGCGCCGCTAAAGACCATAATCTTTAGCTGCGTTTGTGGT
1 AAAAGCGCCGCTAAAGATCA-GGTCTTTAGCGGCGTTTGTAGT
* * *
31988943 GAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTT
1 AAAAGCGCCGCTAAAGATC-AGGTCTTTAGCGGCGTTT
31988981 ATTTCTAAAA
Statistics
Matches: 164, Mismatches: 36, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
42 4 0.02
43 158 0.96
44 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (42 bp):
AAAAGCGCCGCTAAAGATCAGGTCTTTAGCGGCGTTTGTAGT
Found at i:31988927 original size:86 final size:86
Alignment explanation
Indices: 31988772--31988980 Score: 212
Period size: 86 Copynumber: 2.4 Consensus size: 86
31988762 GTTTGTAGAA
* * * * **
31988772 AAAGCGACGCT-AAAGATCA-GAGTCTTTAGCAGCGTTTGTTTGGAAAGCGCCGCTAAAGGTCAT
1 AAAGCGCCGCTAAAAG-TCATG-GTCTTTAGCGGCGTTTGTGTGAAAAGCGCCGCTAAAGACCAT
** *
31988835 TGTCTTTAG-TGGCGTTTTTCAT-
64 AATCTTTAGCT-GCGTTTGTCATG
*
31988857 ATAAGCGCTGCTAAAAGTCATGGTCTTTAGCGGCGTTTGTCGT-AAAAGCGCCGCTAAAGACCAT
1 A-AAGCGCCGCTAAAAGTCATGGTCTTTAGCGGCGTTTGT-GTGAAAAGCGCCGCTAAAGACCAT
**
31988921 AATCTTTAGCTGCGTTTGTGGTG
64 AATCTTTAGCTGCGTTTGTCATG
* *
31988944 AAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTT
1 AAAGCGCCGCTAAAAGTCATGGTCTTTAGCGGCGTTT
31988981 ATTTCTAAAA
Statistics
Matches: 103, Mismatches: 15, Indels: 11
0.80 0.12 0.09
Matches are distributed among these distances:
85 1 0.01
86 94 0.91
87 8 0.08
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (86 bp):
AAAGCGCCGCTAAAAGTCATGGTCTTTAGCGGCGTTTGTGTGAAAAGCGCCGCTAAAGACCATAA
TCTTTAGCTGCGTTTGTCATG
Found at i:31988969 original size:129 final size:129
Alignment explanation
Indices: 31988738--31988980 Score: 348
Period size: 129 Copynumber: 1.9 Consensus size: 129
31988728 AAAAACGCCA
* * *
31988738 CTAAAGGTCATGGTCATTTGCGGCGTTTGTAGAAAAAGCGACGCTAAAGATCAGAGTCTTTAGCA
1 CTAAAAGTCATGGTCATTTGCGGCGTTTGTAGAAAAAGCGACGCTAAAGACCAGAATCTTTAGCA
* *
31988803 GCGTTTGTTTGGAAAGCGCCGCTAAAGGTCATTGTCTTTAGTGGCGTTTTTCATATAAGCGCTG
66 GCGTTTGTGTGGAAAGCGCCGCTAAAGGTCATTGTCTTTAGCGGCGTTTTTCATATAAGCGCTG
* * * *
31988867 CTAAAAGTCATGGTC-TTTAGCGGCGTTTGTCGTAAAAGCGCCGCTAAAGACCATAATCTTTAGC
1 CTAAAAGTCATGGTCATTT-GCGGCGTTTGTAGAAAAAGCGACGCTAAAGACCAGAATCTTTAGC
*
31988931 TGCGTTTGTG-GTGAAAGCGCCGCTAAAGGTC-TTGGTCTTTAGCGGCGTTT
65 AGCGTTTGTGTG-GAAAGCGCCGCTAAAGGTCATT-GTCTTTAGCGGCGTTT
31988981 ATTTCTAAAA
Statistics
Matches: 101, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
128 6 0.06
129 95 0.94
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (129 bp):
CTAAAAGTCATGGTCATTTGCGGCGTTTGTAGAAAAAGCGACGCTAAAGACCAGAATCTTTAGCA
GCGTTTGTGTGGAAAGCGCCGCTAAAGGTCATTGTCTTTAGCGGCGTTTTTCATATAAGCGCTG
Found at i:31993858 original size:16 final size:16
Alignment explanation
Indices: 31993837--31993867 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
31993827 TAAATTCATA
31993837 GATAAAATGTTACATG
1 GATAAAATGTTACATG
31993853 GATAAAATGTTACAT
1 GATAAAATGTTACAT
31993868 TTCATAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.06, G:0.16, T:0.32
Consensus pattern (16 bp):
GATAAAATGTTACATG
Found at i:31999575 original size:21 final size:19
Alignment explanation
Indices: 31999546--31999602 Score: 51
Period size: 22 Copynumber: 2.7 Consensus size: 19
31999536 TAAAAAATTG
31999546 AAATATTGAAAAAGAATAAAGA
1 AAAT-TTGAAAAA-AA-AAAGA
31999568 AAATTTGAAGTAAAAAAAAGA
1 AAATTTGAA--AAAAAAAAGA
*
31999589 AGGATTTGAAAAAA
1 A-AATTTGAAAAAA
31999603 TTTGAGTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
20 4 0.13
21 11 0.35
22 13 0.42
23 3 0.10
ACGTcount: A:0.65, C:0.00, G:0.16, T:0.19
Consensus pattern (19 bp):
AAATTTGAAAAAAAAAAGA
Found at i:32001759 original size:16 final size:18
Alignment explanation
Indices: 32001721--32001762 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
32001711 GTTTACAAAT
*
32001721 AAGAAAGAAAATGAGAGTA
1 AAGAAAAAAAATGAGAG-A
32001740 AAGAAAAAAAAT-AGAG-
1 AAGAAAAAAAATGAGAGA
32001756 AAGAAAA
1 AAGAAAA
32001763 GTGAAAAGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 7 0.32
18 4 0.18
19 11 0.50
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.07
Consensus pattern (18 bp):
AAGAAAAAAAATGAGAGA
Found at i:32001901 original size:17 final size:17
Alignment explanation
Indices: 32001879--32001914 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
32001869 ATTGGAAGAA
32001879 AAAATATTGAGTTGATT
1 AAAATATTGAGTTGATT
32001896 AAAATATTGAGTTGATT
1 AAAATATTGAGTTGATT
32001913 AA
1 AA
32001915 TGAGAGGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.17, T:0.39
Consensus pattern (17 bp):
AAAATATTGAGTTGATT
Found at i:32006795 original size:151 final size:151
Alignment explanation
Indices: 32006502--32006804 Score: 462
Period size: 151 Copynumber: 2.0 Consensus size: 151
32006492 CTATTCACTT
** * * *
32006502 TCACGAGTTTGCTCACACAAGCTGTCAGTCTTTTGTTACTACTCAGTGCTGCTCACACAAGCTAT
1 TCACGAGCCTGCTCACACAAGCTGTCAGTCATTCGTCACTACTCAGTGCTGCTCACACAAGCTAT
* * *
32006567 CAGGTATCCGCAACATATGCCGGTATACCCAGCCACTGGTAGAACTTAAGACCAGCACCTGATTT
66 CAGGTATCCGCAACATATGCCGGTATACCCAGCCACTGGTAGAACTTAAGACCAGCACCCGAATC
*
32006632 CACATTAATCACAGTTTCACA
131 CACATTAATCACAATTTCACA
*
32006653 TCACGAGCCTGCTCACACAAGCTGTCAGTCATTCGTCACTACTCAGTGCTGCTCACACAAGCTGT
1 TCACGAGCCTGCTCACACAAGCTGTCAGTCATTCGTCACTACTCAGTGCTGCTCACACAAGCTAT
* * * *
32006718 CAGGTATCCGTAACATATGCCGGTATACCCAGCCACTGGTAGAACTTATGACTAGCGCCCGAATC
66 CAGGTATCCGCAACATATGCCGGTATACCCAGCCACTGGTAGAACTTAAGACCAGCACCCGAATC
* *
32006783 CACTTTATTCACAATTTCACA
131 CACATTAATCACAATTTCACA
32006804 T
1 T
32006805 AGATCTCTAA
Statistics
Matches: 136, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
151 136 1.00
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (151 bp):
TCACGAGCCTGCTCACACAAGCTGTCAGTCATTCGTCACTACTCAGTGCTGCTCACACAAGCTAT
CAGGTATCCGCAACATATGCCGGTATACCCAGCCACTGGTAGAACTTAAGACCAGCACCCGAATC
CACATTAATCACAATTTCACA
Found at i:32011778 original size:5 final size:5
Alignment explanation
Indices: 32011768--32011796 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
32011758 CACATGCTCT
32011768 TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
32011797 TCACAAGCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTC
Found at i:32034434 original size:30 final size:31
Alignment explanation
Indices: 32034376--32034435 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
32034366 GCCTTTTGAA
* *
32034376 AATATTTACAAAAAAATGACATCTAATTTTT
1 AATATTTACAAAAAAATGACACCAAATTTTT
32034407 AATATTTACAAAAAGAAT-A-ACCAAATTTT
1 AATATTTACAAAAA-AATGACACCAAATTTT
32034436 GAAAATAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 8 0.31
31 15 0.58
32 3 0.12
ACGTcount: A:0.52, C:0.10, G:0.03, T:0.35
Consensus pattern (31 bp):
AATATTTACAAAAAAATGACACCAAATTTTT
Found at i:32038210 original size:206 final size:206
Alignment explanation
Indices: 32037856--32038267 Score: 806
Period size: 206 Copynumber: 2.0 Consensus size: 206
32037846 CAACATCCTA
32037856 AATATTGACATAGGTATCAAGTTGATACTCGCACCCAAATCACATAGTGTCTTACCATAATATGT
1 AATATTGACATAGGTATCAAGTTGATACTCGCACCCAAATCACATAGTGTCTTACCATAATATGT
32037921 TGCTCCAATGTTGCAAGCTATGGTAAAACATCCAGGATCTTTCAACTTTGGGGGTAGTTTGTCTT
66 TGCTCCAATGTTGCAAGCTATGGTAAAACATCCAGGATCTTTCAACTTTGGGGGTAGTTTGTCTT
*
32037986 GAGGATATGCAATGCATTCCTTTTGTCAGGGCTACTGTCTCAAATTCTCCAAGTCTTCATTTTTT
131 GAAGATATGCAATGCATTCCTTTTGTCAGGGCTACTGTCTCAAATTCTCCAAGTCTTCATTTTTT
32038051 TTACAGGATAT
196 TTACAGGATAT
32038062 AATATTGACATAGGTATCAAGTTGATACTCGCACCCAAATCACATAGTGTCTTACCATAATATGT
1 AATATTGACATAGGTATCAAGTTGATACTCGCACCCAAATCACATAGTGTCTTACCATAATATGT
32038127 TGCTCCAATGTTGCAAGCTATGGTAAAACATCCAGGATCTTTCAACTTTGGGGGTAGTTTGTCTT
66 TGCTCCAATGTTGCAAGCTATGGTAAAACATCCAGGATCTTTCAACTTTGGGGGTAGTTTGTCTT
32038192 GAAGATATGCAATGCATTCCTTTTGTCAGGGCTACTGTCTCAAATTCTCCAAGTCTTCATTTTTT
131 GAAGATATGCAATGCATTCCTTTTGTCAGGGCTACTGTCTCAAATTCTCCAAGTCTTCATTTTTT
*
32038257 TTATAGGATAT
196 TTACAGGATAT
32038268 CCTTCAGAAT
Statistics
Matches: 204, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
206 204 1.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (206 bp):
AATATTGACATAGGTATCAAGTTGATACTCGCACCCAAATCACATAGTGTCTTACCATAATATGT
TGCTCCAATGTTGCAAGCTATGGTAAAACATCCAGGATCTTTCAACTTTGGGGGTAGTTTGTCTT
GAAGATATGCAATGCATTCCTTTTGTCAGGGCTACTGTCTCAAATTCTCCAAGTCTTCATTTTTT
TTACAGGATAT
Found at i:32042342 original size:22 final size:22
Alignment explanation
Indices: 32042299--32042342 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
32042289 AAAAATAATC
**
32042299 AAAACTAATCAAAATTTGACAT
1 AAAACTAATCAAAATTCAACAT
* *
32042321 AAAATTAATTAAAATTCAACAT
1 AAAACTAATCAAAATTCAACAT
32042343 GTTCATAATT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.57, C:0.11, G:0.02, T:0.30
Consensus pattern (22 bp):
AAAACTAATCAAAATTCAACAT
Found at i:32048197 original size:19 final size:19
Alignment explanation
Indices: 32048173--32048209 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
32048163 TGGAAATGTC
* *
32048173 ATTTCCATTTTCATTTTTT
1 ATTTCCAATTCCATTTTTT
32048192 ATTTCCAATTCCATTTTT
1 ATTTCCAATTCCATTTTT
32048210 GGAAATCTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.00, T:0.62
Consensus pattern (19 bp):
ATTTCCAATTCCATTTTTT
Found at i:32048732 original size:66 final size:66
Alignment explanation
Indices: 32048626--32048757 Score: 194
Period size: 66 Copynumber: 2.0 Consensus size: 66
32048616 CTTATTACAT
*
32048626 TAATGTCGCTACATGAGTTAATCCCAGATTGCGTTCAGAATTGTTGCCGCACTTGACAGCTGTCT
1 TAATGTCGCTACATGAGTTAATCCCAGATTACGTTCAGAATTGTTGCCGCACTTGACAGCTGTCT
32048691 G
66 G
* * ** *
32048692 TAATGTCGCTACATGAGTTAATTCCAGATTAC-TTCCAGAATTTTTGTTGCACTTGATAGCTGTC
1 TAATGTCGCTACATGAGTTAATCCCAGATTACGTT-CAGAATTGTTGCCGCACTTGACAGCTGTC
32048756 TG
65 TG
32048758 GATAAGAACT
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
65 2 0.03
66 57 0.97
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.36
Consensus pattern (66 bp):
TAATGTCGCTACATGAGTTAATCCCAGATTACGTTCAGAATTGTTGCCGCACTTGACAGCTGTCT
G
Found at i:32057720 original size:41 final size:37
Alignment explanation
Indices: 32057625--32057721 Score: 104
Period size: 38 Copynumber: 2.5 Consensus size: 37
32057615 TATAATCACT
* *
32057625 TTAATATTAAATTAATATAATATTTATCTTGATAAATA
1 TTAA-ATTAAATTAATATAATATTTATCTAGATAAACA
* *
32057663 TTATAATCAAAATAATATAATATTTATCTAAAAGATAAACA
1 TTA-AATTAAATTAATATAATATTTATCT---AGATAAACA
32057704 TTAAATTAAATTTAATAT
1 TTAAATTAAA-TTAATAT
32057722 TAAACCATTA
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
38 25 0.52
39 1 0.02
40 6 0.12
41 16 0.33
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (37 bp):
TTAAATTAAATTAATATAATATTTATCTAGATAAACA
Found at i:32059605 original size:27 final size:27
Alignment explanation
Indices: 32059537--32059606 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
32059527 CACACGTGAA
* *
32059537 CACCAACTCGCCGAGCCTACTGGAGAT
1 CACCAACTCGCCAAGCCTACTGGAGAC
**
32059564 CACCAACTCATCAAGCCTACT-GACGAC
1 CACCAACTCGCCAAGCCTACTGGA-GAC
*
32059591 CACCAACTTGCCAAGC
1 CACCAACTCGCCAAGC
32059607 GCCAAACTCC
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
26 2 0.06
27 33 0.94
ACGTcount: A:0.30, C:0.40, G:0.16, T:0.14
Consensus pattern (27 bp):
CACCAACTCGCCAAGCCTACTGGAGAC
Found at i:32060231 original size:12 final size:12
Alignment explanation
Indices: 32060203--32060235 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
32060193 CTTCGTTATT
32060203 TTTATG-TTTTC
1 TTTATGTTTTTC
32060214 -TTATGTTTTTC
1 TTTATGTTTTTC
32060225 TTTATGTTTTT
1 TTTATGTTTTT
32060236 ATTTGCAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 5 0.25
11 5 0.25
12 10 0.50
ACGTcount: A:0.09, C:0.06, G:0.09, T:0.76
Consensus pattern (12 bp):
TTTATGTTTTTC
Found at i:32066469 original size:16 final size:16
Alignment explanation
Indices: 32066448--32066479 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
32066438 GTTTCGTTGC
*
32066448 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
32066464 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
32066480 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:32066761 original size:51 final size:51
Alignment explanation
Indices: 32066697--32066893 Score: 204
Period size: 51 Copynumber: 3.9 Consensus size: 51
32066687 ATTAATGATA
* * *
32066697 CCGGTTCACATAGTAGCCTACACATAGTACTACACATGTGACCATCACTAA
1 CCGGTACACATAGTAGCCTACACATAGTACTACACACGTGACCATCACTAT
* * * * *
32066748 CCGATACACATAGTATCCTGCACATAATACTACACACGTGATCGA--AGCTAT
1 CCGGTACACATAGTAGCCTACACATAGTACTACACACGTGA-CCATCA-CTAT
* * * *
32066799 CCGGTACGCATAGTAGCCTACACATAGTACTACAAATGCGACCTATCA-T-T
1 CCGGTACACATAGTAGCCTACACATAGTACTACACACGTGACC-ATCACTAT
* * *
32066849 CTGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 CCGGTACACATAGTAGCCTACACATAGTACTACACACGTGACCAT
32066894 TGCTTTCACT
Statistics
Matches: 117, Mismatches: 24, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
49 2 0.02
50 39 0.33
51 73 0.62
52 2 0.02
53 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.23
Consensus pattern (51 bp):
CCGGTACACATAGTAGCCTACACATAGTACTACACACGTGACCATCACTAT
Found at i:32066912 original size:101 final size:102
Alignment explanation
Indices: 32066697--32066923 Score: 264
Period size: 101 Copynumber: 2.2 Consensus size: 102
32066687 ATTAATGATA
* *
32066697 CCGGTTCACATAGTAGCCTACACATAGTACTACACATGTGACCATCACTAACCGATACACATAGT
1 CCGGTTCACATAGTAGCCTACACATAGTACTACAAATGCGACCATCACTAACCGATACACATAGT
* *
32066762 ATCCTGCACATAATACTACACACGTGATCGAAGCTAT
66 AGCCTGCACATAATACTACACACGTGATCCAAGCTAT
* * * * * *
32066799 CCGGTACGCATAGTAGCCTACACATAGTACTACAAATGCGACCTATCA-T-TCTGGTACACGTAG
1 CCGGTTCACATAGTAGCCTACACATAGTACTACAAATGCGACC-ATCACTAACCGATACACATAG
* * *
32066862 TAGCCTGCACATAGTACTACACACGTGA-CCATTGCTTT
65 TAGCCTGCACATAATACTACACACGTGATCCA-AGCTAT
* *
32066900 CAC-TTTCACATAGTGGCCTACACA
1 C-CGGTTCACATAGTAGCCTACACA
32066924 CAGACCATGC
Statistics
Matches: 105, Mismatches: 17, Indels: 7
0.81 0.13 0.05
Matches are distributed among these distances:
100 2 0.02
101 58 0.55
102 41 0.39
103 4 0.04
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (102 bp):
CCGGTTCACATAGTAGCCTACACATAGTACTACAAATGCGACCATCACTAACCGATACACATAGT
AGCCTGCACATAATACTACACACGTGATCCAAGCTAT
Found at i:32069699 original size:28 final size:27
Alignment explanation
Indices: 32069658--32069726 Score: 84
Period size: 28 Copynumber: 2.5 Consensus size: 27
32069648 GTTTTCACAA
*
32069658 ATTTAAAATTTAATCGATTTATTTTTT
1 ATTTAAAATTTAATCCATTTATTTTTT
* *
32069685 ATTTAAATATTTAATCCTTTTATTTTTAA
1 ATTTAAA-ATTTAATCCATTTATTTTT-T
*
32069714 ATTTTAAATTTAA
1 ATTTAAAATTTAA
32069727 ATTTAATTGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
27 7 0.19
28 23 0.64
29 6 0.17
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.58
Consensus pattern (27 bp):
ATTTAAAATTTAATCCATTTATTTTTT
Found at i:32074804 original size:31 final size:30
Alignment explanation
Indices: 32074766--32074830 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 30
32074756 AATACAAAGA
* *
32074766 ATTCTTTCATTACTCAATACATTTTCATTC
1 ATTCTTTCAATACTCAATACAGTTTCATTC
* *
32074796 TATTCTTTCAATACTTAGTACAGTTTCATTC
1 -ATTCTTTCAATACTCAATACAGTTTCATTC
32074827 ATTC
1 ATTC
32074831 AATACACAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 4 0.13
31 26 0.87
ACGTcount: A:0.26, C:0.22, G:0.03, T:0.49
Consensus pattern (30 bp):
ATTCTTTCAATACTCAATACAGTTTCATTC
Found at i:32075264 original size:7 final size:7
Alignment explanation
Indices: 32075252--32075285 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
32075242 TGAGCAAAAG
32075252 AATTTTA
1 AATTTTA
32075259 AATTTTA
1 AATTTTA
32075266 AATTTTA
1 AATTTTA
32075273 AATTATT-
1 AATT-TTA
32075280 AATTTT
1 AATTTT
32075286 TTTCAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 2 0.08
7 22 0.85
8 2 0.08
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
AATTTTA
Found at i:32077771 original size:16 final size:16
Alignment explanation
Indices: 32077744--32077814 Score: 97
Period size: 16 Copynumber: 4.4 Consensus size: 16
32077734 GTTTGGTTCA
32077744 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
* *
32077760 CTATAATTGAATAGAG
1 CTGTAATGGAATAGAG
*
32077776 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
* *
32077792 TTGTAATGGAATAAAG
1 CTGTAATGGAATAGAG
32077808 CTGTAAT
1 CTGTAAT
32077815 CAGTAATTCA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.39, C:0.06, G:0.24, T:0.31
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:32078129 original size:22 final size:24
Alignment explanation
Indices: 32078090--32078143 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 24
32078080 TAAATATTAT
* *
32078090 TTATTT-ATTTTATCAATACAT-A
1 TTATTTAATTTAATCAATAAATAA
32078112 TTATTTAATTTAAT-AATAAATAA
1 TTATTTAATTTAATCAATAAATAA
*
32078135 TAATTTAAT
1 TTATTTAAT
32078144 CATATTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 12 0.44
23 15 0.56
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (24 bp):
TTATTTAATTTAATCAATAAATAA
Found at i:32083217 original size:17 final size:18
Alignment explanation
Indices: 32083195--32083228 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
32083185 AAAACTAAAA
*
32083195 TTAAAAGTAA-AAGAAAG
1 TTAAAAGAAATAAGAAAG
32083212 TTAAAAGAAATAAGAAA
1 TTAAAAGAAATAAGAAA
32083229 AAATAATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.68, C:0.00, G:0.15, T:0.18
Consensus pattern (18 bp):
TTAAAAGAAATAAGAAAG
Found at i:32083505 original size:22 final size:22
Alignment explanation
Indices: 32083454--32083505 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 22
32083444 TAGAAATTAA
32083454 TAAAATAAAATAATTAATTAGG
1 TAAAATAAAATAATTAATTAGG
*
32083476 TAATAATAAAA-AATTAATTGGG
1 TAA-AATAAAATAATTAATTAGG
32083498 TTAAAATA
1 -TAAAATA
32083506 TATATATATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
22 17 0.63
23 10 0.37
ACGTcount: A:0.58, C:0.00, G:0.10, T:0.33
Consensus pattern (22 bp):
TAAAATAAAATAATTAATTAGG
Found at i:32085479 original size:23 final size:23
Alignment explanation
Indices: 32085453--32085551 Score: 171
Period size: 23 Copynumber: 4.3 Consensus size: 23
32085443 AGTGTTATTG
*
32085453 ATCAGTGGTAACTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
32085476 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
32085499 ATCAGTGGTAGCTTCAGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
32085522 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
32085545 ATCAGTG
1 ATCAGTG
32085552 TGGCACTTAT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 71 1.00
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.31
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:32085724 original size:38 final size:37
Alignment explanation
Indices: 32085681--32085752 Score: 101
Period size: 38 Copynumber: 1.9 Consensus size: 37
32085671 ATGTGTGGAA
*
32085681 TTGAATTGAATATTGACTTGAAA-ATGAAAAAGTGAGTT
1 TTGAATTGAATAGTGA-TT-AAATATGAAAAAGTGAGTT
*
32085719 TTGAATTGAATAGTGATTAAATGTGAAAAAGTGA
1 TTGAATTGAATAGTGATTAAATATGAAAAAGTGA
32085753 AATTATGAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
36 3 0.10
37 13 0.42
38 15 0.48
ACGTcount: A:0.43, C:0.01, G:0.22, T:0.33
Consensus pattern (37 bp):
TTGAATTGAATAGTGATTAAATATGAAAAAGTGAGTT
Found at i:32094619 original size:30 final size:30
Alignment explanation
Indices: 32094562--32094620 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
32094552 TGCCTTTGAA
* *
32094562 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGGCAGCAAATTTTT
32094592 AATATTTACAAAAAGA-GCAAGCAAATTTT
1 AATATTTACAAAAAGAGGC-AGCAAATTTT
32094621 GAAAATAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 2 0.08
30 24 0.92
ACGTcount: A:0.47, C:0.10, G:0.10, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGCAGCAAATTTTT
Found at i:32095486 original size:14 final size:14
Alignment explanation
Indices: 32095469--32095495 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32095459 CGAGTATGCC
32095469 TTTGATCTCTTTAG
1 TTTGATCTCTTTAG
32095483 TTTGATCTCTTTA
1 TTTGATCTCTTTA
32095496 TTTTCCAGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.11, T:0.59
Consensus pattern (14 bp):
TTTGATCTCTTTAG
Found at i:32105121 original size:43 final size:43
Alignment explanation
Indices: 32105037--32105135 Score: 119
Period size: 43 Copynumber: 2.3 Consensus size: 43
32105027 TCTGTTCTTT
* * *
32105037 CGATGATGCACTATGCGTGCCAGTATATTTTGATGGGTTTATC
1 CGATGATGCACTACGCGTGCCAGTATATTTTGATCGATTTATC
* *
32105080 CGATGATGCACTACGTGTGCCAGTATATTTCT-TTCGATTTATC
1 CGATGATGCACTACGCGTGCCAGTATATTT-TGATCGATTTATC
**
32105123 TAATGATGCACTA
1 CGATGATGCACTA
32105136 TAGTGCTAGA
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
43 47 0.98
44 1 0.02
ACGTcount: A:0.23, C:0.18, G:0.21, T:0.37
Consensus pattern (43 bp):
CGATGATGCACTACGCGTGCCAGTATATTTTGATCGATTTATC
Found at i:32123591 original size:36 final size:36
Alignment explanation
Indices: 32123544--32123617 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
32123534 AACATTCATT
*
32123544 TATTAAAACATACTTATGAAATAAATGATTAAAACA
1 TATTAAAACATACTTATGAAAGAAATGATTAAAACA
32123580 TATTAAAACATACTTATGAAAGAAATGATTAAAACA
1 TATTAAAACATACTTATGAAAGAAATGATTAAAACA
32123616 TA
1 TA
32123618 CTTGAAAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.55, C:0.08, G:0.07, T:0.30
Consensus pattern (36 bp):
TATTAAAACATACTTATGAAAGAAATGATTAAAACA
Found at i:32123629 original size:24 final size:26
Alignment explanation
Indices: 32123581--32123629 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
32123571 ATTAAAACAT
*
32123581 ATTAAAACATACTTATGAAAGAAATG
1 ATTAAAACATACTTATGAAAAAAATG
32123607 ATTAAAACATAC-T-TGAAAAAAAT
1 ATTAAAACATACTTATGAAAAAAAT
32123630 TTAAAAGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 9 0.41
25 1 0.05
26 12 0.55
ACGTcount: A:0.57, C:0.08, G:0.08, T:0.27
Consensus pattern (26 bp):
ATTAAAACATACTTATGAAAAAAATG
Found at i:32128451 original size:13 final size:13
Alignment explanation
Indices: 32128433--32128459 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
32128423 TATAATTATA
32128433 ATTTTTTATTTTT
1 ATTTTTTATTTTT
32128446 ATTTTTTATTTTT
1 ATTTTTTATTTTT
32128459 A
1 A
32128460 GACATTTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (13 bp):
ATTTTTTATTTTT
Found at i:32136490 original size:11 final size:10
Alignment explanation
Indices: 32136474--32136507 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
32136464 AATTTACGAA
32136474 TTTTTTTATG
1 TTTTTTTATG
32136484 TTTTTTTATG
1 TTTTTTTATG
32136494 TTTTTTTA-G
1 TTTTTTTATG
32136503 TTTTT
1 TTTTT
32136508 AGTATTAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 6 0.25
10 18 0.75
ACGTcount: A:0.09, C:0.00, G:0.09, T:0.82
Consensus pattern (10 bp):
TTTTTTTATG
Found at i:32137328 original size:25 final size:25
Alignment explanation
Indices: 32137294--32137351 Score: 116
Period size: 25 Copynumber: 2.3 Consensus size: 25
32137284 AAATTATTAT
32137294 TTAGTTTTCATATTTGATTTCGCTC
1 TTAGTTTTCATATTTGATTTCGCTC
32137319 TTAGTTTTCATATTTGATTTCGCTC
1 TTAGTTTTCATATTTGATTTCGCTC
32137344 TTAGTTTT
1 TTAGTTTT
32137352 TTACCTAGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.16, C:0.14, G:0.12, T:0.59
Consensus pattern (25 bp):
TTAGTTTTCATATTTGATTTCGCTC
Found at i:32139798 original size:47 final size:47
Alignment explanation
Indices: 32139729--32139823 Score: 174
Period size: 47 Copynumber: 2.0 Consensus size: 47
32139719 TGTGTGATTG
32139729 TTTTATGCTTTTCTAGGAAGATAATTGGTTAAAGCTAGGTGTATAGA
1 TTTTATGCTTTTCTAGGAAGATAATTGGTTAAAGCTAGGTGTATAGA
32139776 TTTTATGCTTTTCCT-GGAAGATAATTGGTTAAAGCTAGGTGTATAGA
1 TTTTATGCTTTT-CTAGGAAGATAATTGGTTAAAGCTAGGTGTATAGA
32139823 T
1 T
32139824 ATGACGCTTT
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
47 45 0.96
48 2 0.04
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.41
Consensus pattern (47 bp):
TTTTATGCTTTTCTAGGAAGATAATTGGTTAAAGCTAGGTGTATAGA
Found at i:32139833 original size:47 final size:47
Alignment explanation
Indices: 32139735--32139833 Score: 155
Period size: 47 Copynumber: 2.1 Consensus size: 47
32139725 ATTGTTTTAT
* * *
32139735 GCTTTTCTAGGAAGATAATTGGTTAAAGCTAGGTGTATAGATTTTAT
1 GCTTTTCTAGGAAGATAATTGGTTAAAGCTAGGTGTATAGATATGAC
32139782 GCTTTTCCT-GGAAGATAATTGGTTAAAGCTAGGTGTATAGATATGAC
1 GCTTTT-CTAGGAAGATAATTGGTTAAAGCTAGGTGTATAGATATGAC
32139829 GCTTT
1 GCTTT
32139834 ACTTTTTTGT
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
47 46 0.96
48 2 0.04
ACGTcount: A:0.28, C:0.09, G:0.24, T:0.38
Consensus pattern (47 bp):
GCTTTTCTAGGAAGATAATTGGTTAAAGCTAGGTGTATAGATATGAC
Found at i:32140203 original size:23 final size:23
Alignment explanation
Indices: 32140173--32140216 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
32140163 GAATGTGGTG
32140173 GTTGTGGATAACTAGGATTGTTA
1 GTTGTGGATAACTAGGATTGTTA
**
32140196 GTTGTGGATATTTAGGATTGT
1 GTTGTGGATAACTAGGATTGT
32140217 ATGTGTCTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.23, C:0.02, G:0.32, T:0.43
Consensus pattern (23 bp):
GTTGTGGATAACTAGGATTGTTA
Found at i:32140970 original size:58 final size:60
Alignment explanation
Indices: 32140897--32141097 Score: 174
Period size: 61 Copynumber: 3.2 Consensus size: 60
32140887 ATCACTTTAA
* * * *
32140897 TATTTAATTATTATAATAATTA-T-CAAGGTAAATATTAGATTTAATTTAATATTAAATC
1 TATTAAATTAATATAATAATTACTACAAGATAAATATTAAATTTAATTTAATATTAAATC
* *
32140955 TATTAAATTAATATAATATTTATCTACAAGATAAATATTAAATTTAATTTAATATTAAGATAA
1 TATTAAATTAATATAATAATTA-CTACAAGATAAATATTAAATTTAATTTAATATTAA-AT-C
* * * * *
32141018 TCACTTTAATATTAAGT-TAATAATATACTATCAAGATAAGTATTAAATTAAATTTCATGTTCAA
1 T-A--TTAA-ATTAA-TATAATAAT-TACTA-CAAGATAAATATTAAATTTAATTTAATATTAAA
*
32141082 TT
59 TC
*
32141084 TATTAAAATAATAT
1 TATTAAATTAATAT
32141098 TATTTTTGAA
Statistics
Matches: 116, Mismatches: 14, Indels: 22
0.76 0.09 0.14
Matches are distributed among these distances:
58 19 0.16
60 1 0.01
61 31 0.27
62 7 0.06
63 5 0.04
64 1 0.01
65 1 0.01
66 5 0.04
67 16 0.14
68 30 0.26
ACGTcount: A:0.47, C:0.05, G:0.04, T:0.44
Consensus pattern (60 bp):
TATTAAATTAATATAATAATTACTACAAGATAAATATTAAATTTAATTTAATATTAAATC
Found at i:32144796 original size:27 final size:25
Alignment explanation
Indices: 32144719--32144796 Score: 93
Period size: 26 Copynumber: 3.0 Consensus size: 25
32144709 TTTCTCACCC
*
32144719 CAATTTTACCCTAATAAAATTTTGA
1 CAATTTTACCCTGATAAAATTTTGA
* *
32144744 CAATTTTACTCTTGGTAAAATTTTGA
1 CAATTTTAC-CCTGATAAAATTTTGA
*
32144770 CGATTTTAAACCCTGATAAAATTTTGA
1 CAATTTT--ACCCTGATAAAATTTTGA
32144797 GAAAATTCAT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
25 9 0.20
26 19 0.43
27 14 0.32
28 2 0.05
ACGTcount: A:0.36, C:0.14, G:0.09, T:0.41
Consensus pattern (25 bp):
CAATTTTACCCTGATAAAATTTTGA
Found at i:32145073 original size:9 final size:10
Alignment explanation
Indices: 32145046--32145086 Score: 52
Period size: 10 Copynumber: 4.4 Consensus size: 10
32145036 TGAATGTTTT
*
32145046 TTCATTTCTC
1 TTCATTTCTA
32145056 TT--TTTCTA
1 TTCATTTCTA
32145064 TTCA-TTCTA
1 TTCATTTCTA
32145073 TTCATTTCTA
1 TTCATTTCTA
32145083 TTCA
1 TTCA
32145087 AACACGTAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
8 7 0.26
9 9 0.33
10 11 0.41
ACGTcount: A:0.17, C:0.22, G:0.00, T:0.61
Consensus pattern (10 bp):
TTCATTTCTA
Found at i:32147450 original size:30 final size:29
Alignment explanation
Indices: 32147254--32147463 Score: 260
Period size: 29 Copynumber: 7.2 Consensus size: 29
32147244 ATATCGACGC
32147254 CCATCGAATATGAAAAGGGATGGTTTCGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
* * **
32147283 CCATCAAATATGAAAAGGGATGCTGACGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
* * *
32147312 CCATCAAATATGAAAAGGGGTAGTTTCGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
*
32147341 CCATC-AAGTATGAAAAGGGATGGTTTCTA
1 CCATCGAA-TATGAAAAGGGATGGTTTCGA
* **
32147370 CCATCGAATATGAAAAAGGATGGTGACGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
32147399 CCATCGAATATGAAAAGGGATGGTTTCGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
* * * *
32147428 CCATTGATTAAAGAAAATGGATGGTTTCGA
1 CCATCGAAT-ATGAAAAGGGATGGTTTCGA
32147458 CCATCG
1 CCATCG
32147464 TTTAGCACAC
Statistics
Matches: 154, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
28 2 0.01
29 127 0.82
30 25 0.16
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (29 bp):
CCATCGAATATGAAAAGGGATGGTTTCGA
Found at i:32152293 original size:75 final size:75
Alignment explanation
Indices: 32152161--32152303 Score: 182
Period size: 75 Copynumber: 1.9 Consensus size: 75
32152151 GCTTACATAT
* * * * * *
32152161 ATGTATATGTTCTTTTATTGAATTTAGGAAGGACATTTATATAAGTTGATATGATATTTGATTAT
1 ATGTATATGTTCTTGTAATGAATTTAAGAAGGAAATTTATATAAGTTGATAGGATATTCGATTAT
32152226 GCAGGTATAC
66 GCAGGTATAC
* *
32152236 ATGTATATGTTCTTGTAATGAATTTAAGTATGAAATTTATATAAG-T-ATAAGGAATATTCGATT
1 ATGTATATGTTCTTGTAATGAATTTAAGAAGGAAATTTATATAAGTTGAT-AGG-ATATTCGATT
32152299 ATGCA
64 ATGCA
32152304 TATATATTCA
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
73 2 0.03
74 3 0.05
75 53 0.91
ACGTcount: A:0.35, C:0.05, G:0.17, T:0.43
Consensus pattern (75 bp):
ATGTATATGTTCTTGTAATGAATTTAAGAAGGAAATTTATATAAGTTGATAGGATATTCGATTAT
GCAGGTATAC
Found at i:32152481 original size:41 final size:41
Alignment explanation
Indices: 32152395--32152488 Score: 100
Period size: 41 Copynumber: 2.3 Consensus size: 41
32152385 TCAGATTTAC
* * * * * *
32152395 GTCTAGCAGGTTTGATGCCGGTGAAATATTTAAGACTTTAT
1 GTCTAGCAGGCTTAATGCCAGTGAAAAATTTAAGACTATAA
*
32152436 GTCTAGCAGGCTTAATGCCAGTGAAACAATTT-GGACTATAA
1 GTCTAGCAGGCTTAATGCCAGTGAAA-AATTTAAGACTATAA
*
32152477 GTCTAACAGGCT
1 GTCTAGCAGGCT
32152489 AAAAGCCGAT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
41 40 0.91
42 4 0.09
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (41 bp):
GTCTAGCAGGCTTAATGCCAGTGAAAAATTTAAGACTATAA
Found at i:32152694 original size:69 final size:67
Alignment explanation
Indices: 32152613--32152828 Score: 251
Period size: 63 Copynumber: 3.2 Consensus size: 67
32152603 TTGAAGAACA
* * *
32152613 TGTATATACATTCGGTGATAATACTTGTTAGGCATATTTATATATGTATTTAGCTATTCATGTTT
1 TGTATATACATTCGGTGATAATATTTGTTA-GCATATTTATATA-GCATTCAGCTATTCATGTTT
32152678 AAAG
64 AAAG
* * *
32152682 TGTATATACATTCGGTGATAATATTTGTT---ATGTGTATA-AGCATTCGGCTATTCATGTTTAA
1 TGTATATACATTCGGTGATAATATTTGTTAGCATATTTATATAGCATTCAGCTATTCATGTTTAA
32152743 AG
66 AG
* *
32152745 TGTATATACATTCGATGATAATATTTGTTAAGCATATATGTATATACACATTCAGCTATTCATGT
1 TGTATATACATTCGGTGATAATATTTGTT-AGCATAT-T-TATATA-GCATTCAGCTATTCATG-
*
32152810 TTTAAAT
61 TTTAAAG
*
32152817 TGTATATGCATT
1 TGTATATACATT
32152829 TGACTATATG
Statistics
Matches: 125, Mismatches: 13, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
63 49 0.39
64 1 0.01
65 7 0.06
67 3 0.02
69 32 0.26
70 1 0.01
71 15 0.12
72 17 0.14
ACGTcount: A:0.31, C:0.10, G:0.15, T:0.44
Consensus pattern (67 bp):
TGTATATACATTCGGTGATAATATTTGTTAGCATATTTATATAGCATTCAGCTATTCATGTTTAA
AG
Found at i:32152718 original size:32 final size:32
Alignment explanation
Indices: 32152679--32152776 Score: 98
Period size: 32 Copynumber: 3.1 Consensus size: 32
32152669 TTCATGTTTA
32152679 AAGTGTATATACATTCGGTGATAATATTTGTT
1 AAGTGTATATACATTCGGTGATAATATTTGTT
* *
32152711 ATGTGTATA-AGCATTCGGCT-AT--TCATGTT-TA
1 AAGTGTATATA-CATTCGG-TGATAAT-AT-TTGTT
*
32152742 AAGTGTATATACATTCGATGATAATATTTGTT
1 AAGTGTATATACATTCGGTGATAATATTTGTT
32152774 AAG
1 AAG
32152777 CATATATGTA
Statistics
Matches: 52, Mismatches: 5, Indels: 18
0.69 0.07 0.24
Matches are distributed among these distances:
30 2 0.04
31 22 0.42
32 26 0.50
33 2 0.04
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (32 bp):
AAGTGTATATACATTCGGTGATAATATTTGTT
Found at i:32152757 original size:31 final size:31
Alignment explanation
Indices: 32152665--32152758 Score: 97
Period size: 31 Copynumber: 3.0 Consensus size: 31
32152655 TATGTATTTA
32152665 GCTATTCATGTTTAAAGTGTATATACATTCG
1 GCTATTCATGTTTAAAGTGTATATACATTCG
* *
32152696 G-TGATAAT-AT-TTGTTATGTGTATA-AGCATTCG
1 GCT-AT--TCATGTT-TAAAGTGTATATA-CATTCG
32152728 GCTATTCATGTTTAAAGTGTATATACATTCG
1 GCTATTCATGTTTAAAGTGTATATACATTCG
32152759 ATGATAATAT
Statistics
Matches: 50, Mismatches: 4, Indels: 18
0.69 0.06 0.25
Matches are distributed among these distances:
30 2 0.04
31 23 0.46
32 23 0.46
33 2 0.04
ACGTcount: A:0.29, C:0.11, G:0.18, T:0.43
Consensus pattern (31 bp):
GCTATTCATGTTTAAAGTGTATATACATTCG
Found at i:32155166 original size:39 final size:38
Alignment explanation
Indices: 32155112--32155222 Score: 132
Period size: 39 Copynumber: 2.9 Consensus size: 38
32155102 AGTTTGAGTC
32155112 TTTAATTATGTCATAATTTGAACATCATTAATATGAGAT
1 TTTAATTATGTCATAATTTGAACATCATTAATA-GAGAT
* * * * *
32155151 TTTAATTATGTCATAATCTGAACAACATTAGTAGGGGT
1 TTTAATTATGTCATAATTTGAACATCATTAATAGAGAT
* * *
32155189 TTTAATTATGTCATAGTTTAGGACATCTTTAATA
1 TTTAATTATGTCATAATTT-GAACATCATTAATA
32155223 CATGTTTTAA
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
38 20 0.33
39 40 0.67
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (38 bp):
TTTAATTATGTCATAATTTGAACATCATTAATAGAGAT
Found at i:32160060 original size:655 final size:655
Alignment explanation
Indices: 32158769--32160088 Score: 2356
Period size: 656 Copynumber: 2.0 Consensus size: 655
32158759 AAAAAGATGA
32158769 AAGTGATCAAGAAAAAGTGAGGAATGTCCTAACTAACCCACATGCGAGTTTGCCTTGTGAATTTT
1 AAGTGATCAAGAAAAAGTGAGGAATGTCCTAACTAACCCACATGCGAGTTTGCCTTGTGAATTTT
*
32158834 CTTCTTTTCAAGTCACTAAAGATTCATTTGAAAAAATCCAACTTCACAATACCTTCCCGATGAGA
66 CTTCTTTTCAAGTCACTAAAGATTCATTTGAAAAAATCCAACTTCACAATACCTTCCCGATAAGA
*
32158899 GACGATTTCGATTGATCGAGAGGGATAAGATCGAAATGAAATTAATCCACAAGTGCTTAAAGTTA
131 GACGATTTCGATTGATCGAGAGGGATAAGATCAAAATGAAATTAATCCACAAGTGCTTAAAGTTA
* * *
32158964 AGCAAGGTAAGGAAACTTTAGCAATTTAATCATGGTAATCCAATTTGAATGTTGTTGAGAAAATT
196 AGCAAGGTAAGGAAACTTTAGAAATTGAATCATGGCAATCCAATTTGAATGTTGTTGAGAAAATT
32159029 ACCGATGACTTAATTTTCGAAAGATCTCTGTACATTATTTCGATTAATTGTCATTCTTTGATTGT
261 ACCGATGACTTAATTTTCGAAAGATCTCTGTACATTATTTCGATTAATTGTCATTCTTTGATTGT
**
32159094 TGTTGATGATTTTGTCTCAAGAAGTGTTATGAAGATTTTTTCTCATGATGTGTATTGTGTTGGTA
326 TGTTGATGATTTTGTCTCAAGAAGTGTTATGAAGAGCTTTTCTCATGATGTGTATTGTGTTGGTA
32159159 AGTCTGTTGATGTCGTTAGATTAAATCGACGTATACAAAATTTGATCGTACGTGATAAAGAATTT
391 AGTCTGTTGATGTCGTTAGATTAAATCGACGTATACAAAATTTGATCGTACGTGATAAAGAATTT
*
32159224 TCACGCAAAAAGCTTAATTTGTTTGATTTAGATTGTTATGTGAATTCTTTAAATCAATGTGAGAA
456 TCACGCAAAAAGCTTAATCTGTTTGATTTAGATTGTTATGTGAATTCTTTAAATCAATGTGAGAA
32159289 AATTTTATAGATATCTATAACTGTTCGGATGAAATTTGAAAGGTATGGTTGTTTGAACATGAGTA
521 AATTTTATAGATATCTATAACTGTTCGGATGAAATTTGAAAGGTATGGTTGTTTGAACATGAGTA
*
32159354 TGCCTAAATCTTGTTTGTTTGACATATCTGAATTGCTGCTGAAAGAAAAGTCTTTATTGTATTCG
586 TGCCTAAATCTTGTTTGTTTGACATATCTGAATTGCTGCTCAAAGAAAAGTCTTTATTGTATTCG
32159419 AAAAT
651 AAAAT
32159424 AAGTGATCAAGAAAAAGTGAGGAATGTCCTAACTAACCCACATGCGAGTTTGCCTTGTGAATTTT
1 AAGTGATCAAGAAAAAGTGAGGAATGTCCTAACTAACCCACATGCGAGTTTGCCTTGTGAATTTT
* *
32159489 CTTCTTTTCAAGTCAGTAAAGATTCATTTGAAAAATTCCAACTTCACAATACCTTCCCGATAAGA
66 CTTCTTTTCAAGTCACTAAAGATTCATTTGAAAAAATCCAACTTCACAATACCTTCCCGATAAGA
* *
32159554 GACGATTTCGATTGGTCGAGAGGGATAAGATCAAAAATGAAATTAATCCCCAAGTGCTTAAAAG-
131 GACGATTTCGATTGATCGAGAGGGATAAGATC-AAAATGAAATTAATCCACAAGTGCTT-AAAGT
32159618 TAAGCAAGGTAAGGAAACTTTAGAAATTGAATCATGGCAATCCAATTTGAATGTTGTTGAGAAAA
194 TAAGCAAGGTAAGGAAACTTTAGAAATTGAATCATGGCAATCCAATTTGAATGTTGTTGAGAAAA
* * *
32159683 TTACTGATGATTTAGTTTTCGAAAGATCTCTGTACATTATTTCGATTAATTGTCATTCTTTGATT
259 TTACCGATGACTTAATTTTCGAAAGATCTCTGTACATTATTTCGATTAATTGTCATTCTTTGATT
*
32159748 GTTGTTGATGATTTTGTCTCAAGAAGTGTTATGAAGAGCTTTTCTCATGGTGTGTATTGTGTTGG
324 GTTGTTGATGATTTTGTCTCAAGAAGTGTTATGAAGAGCTTTTCTCATGATGTGTATTGTGTTGG
* **
32159813 TAAGTCTGTTGATGTCGTTAGATTAAATCGACGTATACAAAATTTGATCGTATGTGATAACTAAT
389 TAAGTCTGTTGATGTCGTTAGATTAAATCGACGTATACAAAATTTGATCGTACGTGATAAAGAAT
* *
32159878 TTTCACGTAAAAAGCTTAATCTGTTTGATTTGGATTGTTATGTGAATTCTTTAAATCAATGTGAG
454 TTTCACGCAAAAAGCTTAATCTGTTTGATTTAGATTGTTATGTGAATTCTTTAAATCAATGTGAG
* * * *
32159943 AAAATTTTGTGGATATCTATGACTGTTC-GATGAAATTTGAGAGGTATGGTTGTTTGAACATGAG
519 AAAATTTTATAGATATCTATAACTGTTCGGATGAAATTTGAAAGGTATGGTTGTTTGAACATGAG
* *
32160007 TATGCCTAAATCTTGTTTGTTTGACATATCTGAATTGTTGCTCAAAGAAAAGTCTTTCTTGTATT
584 TATGCCTAAATCTTGTTTGTTTGACATATCTGAATTGCTGCTCAAAGAAAAGTCTTTATTGTATT
32160072 CGAAAAT
649 CGAAAAT
32160079 AAGTGATCAA
1 AAGTGATCAA
32160089 AACCATGTGT
Statistics
Matches: 635, Mismatches: 28, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
655 272 0.43
656 359 0.57
657 4 0.01
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.36
Consensus pattern (655 bp):
AAGTGATCAAGAAAAAGTGAGGAATGTCCTAACTAACCCACATGCGAGTTTGCCTTGTGAATTTT
CTTCTTTTCAAGTCACTAAAGATTCATTTGAAAAAATCCAACTTCACAATACCTTCCCGATAAGA
GACGATTTCGATTGATCGAGAGGGATAAGATCAAAATGAAATTAATCCACAAGTGCTTAAAGTTA
AGCAAGGTAAGGAAACTTTAGAAATTGAATCATGGCAATCCAATTTGAATGTTGTTGAGAAAATT
ACCGATGACTTAATTTTCGAAAGATCTCTGTACATTATTTCGATTAATTGTCATTCTTTGATTGT
TGTTGATGATTTTGTCTCAAGAAGTGTTATGAAGAGCTTTTCTCATGATGTGTATTGTGTTGGTA
AGTCTGTTGATGTCGTTAGATTAAATCGACGTATACAAAATTTGATCGTACGTGATAAAGAATTT
TCACGCAAAAAGCTTAATCTGTTTGATTTAGATTGTTATGTGAATTCTTTAAATCAATGTGAGAA
AATTTTATAGATATCTATAACTGTTCGGATGAAATTTGAAAGGTATGGTTGTTTGAACATGAGTA
TGCCTAAATCTTGTTTGTTTGACATATCTGAATTGCTGCTCAAAGAAAAGTCTTTATTGTATTCG
AAAAT
Found at i:32161499 original size:14 final size:15
Alignment explanation
Indices: 32161480--32161520 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
32161470 GTTGTAAAGT
32161480 TTTATTTTTATTTA-
1 TTTATTTTTATTTAG
*
32161494 TTTATTTTTACTTAG
1 TTTATTTTTATTTAG
32161509 TTTAATTTTTAT
1 TTT-ATTTTTAT
32161521 GTAAATATTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 13 0.57
15 3 0.13
16 7 0.30
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (15 bp):
TTTATTTTTATTTAG
Found at i:32166153 original size:14 final size:14
Alignment explanation
Indices: 32166136--32166164 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
32166126 AACTTATGAG
32166136 AAAGAACTCTTGGC
1 AAAGAACTCTTGGC
32166150 AAAGAACTCTTGGC
1 AAAGAACTCTTGGC
32166164 A
1 A
32166165 TTGGTTCGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.21
Consensus pattern (14 bp):
AAAGAACTCTTGGC
Found at i:32168008 original size:14 final size:15
Alignment explanation
Indices: 32167989--32168029 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
32167979 AAGTTTTATT
32167989 TTTATTTTTATTTA-
1 TTTATTTTTATTTAG
*
32168003 TTTATTTTTACTTAG
1 TTTATTTTTATTTAG
32168018 TTTAATTTTTAT
1 TTT-ATTTTTAT
32168030 GTAAATATTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 13 0.57
15 3 0.13
16 7 0.30
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (15 bp):
TTTATTTTTATTTAG
Found at i:32171446 original size:39 final size:39
Alignment explanation
Indices: 32171392--32171508 Score: 119
Period size: 39 Copynumber: 3.0 Consensus size: 39
32171382 TAATTTAGTT
* * *
32171392 TGAATATTCAATTATGTCATAATTTGTACATCATTAATA
1 TGAATTTTTAATTATGTCATAATTTGAACATCATTAATA
* *
32171431 TGAATTTTTAATTATGTCATAATCTGAACAACATTAATA
1 TGAATTTTTAATTATGTCATAATTTGAACATCATTAATA
* ** * * *
32171470 AG-GGTTTTAATTATGTCATAGTTTAGGACATCTTTAATA
1 TGAATTTTTAATTATGTCATAATTT-GAACATCATTAATA
32171509 CATGTTTTAA
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
38 18 0.28
39 46 0.72
ACGTcount: A:0.37, C:0.09, G:0.11, T:0.43
Consensus pattern (39 bp):
TGAATTTTTAATTATGTCATAATTTGAACATCATTAATA
Found at i:32174344 original size:14 final size:14
Alignment explanation
Indices: 32174325--32174373 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
32174315 TAGACACAAA
*
32174325 TTTAACAAATAAAT
1 TTTAACAATTAAAT
32174339 TTTAACAATGTTAAAT
1 TTTAACAA--TTAAAT
*
32174355 ATTAACAATTAAAT
1 TTTAACAATTAAAT
32174369 TTTAA
1 TTTAA
32174374 TTTTTAAACT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
14 18 0.60
16 12 0.40
ACGTcount: A:0.51, C:0.06, G:0.02, T:0.41
Consensus pattern (14 bp):
TTTAACAATTAAAT
Found at i:32177987 original size:24 final size:23
Alignment explanation
Indices: 32177949--32178016 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 23
32177939 TAAAAATAAA
32177949 ATATATATATGAAAAAAAAATGCAC
1 ATATAT-TAT-AAAAAAAAATGCAC
* * * *
32177974 ATGTATTTATAAAAATATATGCAT
1 ATATA-TTATAAAAAAAAATGCAC
*
32177998 ATATATTATAAAAAGAAAT
1 ATATATTATAAAAAAAAAT
32178017 ATGTATGTAC
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
23 12 0.34
24 15 0.43
25 7 0.20
26 1 0.03
ACGTcount: A:0.56, C:0.04, G:0.07, T:0.32
Consensus pattern (23 bp):
ATATATTATAAAAAAAAATGCAC
Found at i:32179622 original size:44 final size:44
Alignment explanation
Indices: 32179445--32179637 Score: 134
Period size: 44 Copynumber: 4.5 Consensus size: 44
32179435 CGACCTACTA
* * *
32179445 CAACTTCAGAG-GTATAGGATTCATCATTTTAATCC-ACTCCACTG
1 CAACTTCAGAGAG-ATAAGATT-ATGATTTTAATCCTGCTCCACTG
* ** ** *
32179489 CAACTTCAGAGAGATAGGATTA-G-TTTCTTCTGTTTGCTCCACTA
1 CAACTTCAGAGAGATAAGATTATGATTT-TAAT-CCTGCTCCACTG
* * * * *
32179533 CAACTTCAGGGAGATAAGACTAT-A-TGTGAT-CTGCT-CTCTG
1 CAACTTCAGAGAGATAAGATTATGATTTTAATCCTGCTCCACTG
32179573 CAACTTCAGAGAGATAAGATCTATGATTTTAATCCT-CTCCACTG
1 CAACTTCAGAGAGATAAGAT-TATGATTTTAATCCTGCTCCACTG
* *
32179617 CAACTTCAGGGAGATAGGATT
1 CAACTTCAGAGAGATAAGATT
32179638 TTTTAAATTA
Statistics
Matches: 115, Mismatches: 23, Indels: 23
0.71 0.14 0.14
Matches are distributed among these distances:
40 21 0.18
41 10 0.09
42 3 0.03
43 10 0.09
44 70 0.61
45 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (44 bp):
CAACTTCAGAGAGATAAGATTATGATTTTAATCCTGCTCCACTG
Found at i:32180098 original size:88 final size:88
Alignment explanation
Indices: 32179949--32180380 Score: 674
Period size: 88 Copynumber: 4.9 Consensus size: 88
32179939 AGATTGATGC
** * * *
32179949 CTTCGATCTGCTT-TGCTACCAGTACAGGAAGGCAAGATCTG-TCATTTTCGACCTACTCCACTG
1 CTTCGATCTGCTTCT-CTGTCAGTACAGGAAGGCAAGATCTGCT-ATTTTCAACCTGCTCCACTA
32180012 CTGCCCAGGGAGACAAGGCTGGTAT
64 CTGCCCAGGGAGACAAGGCTGGTAT
* *
32180037 CTTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTACTATTTTTAACCTGCTCCACTACT
1 CTTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCACTACT
32180102 GCCCAGGGAGACAAGGCTGGTAT
66 GCCCAGGGAGACAAGGCTGGTAT
* *
32180125 CTTCGACCTGCTTCTCTGTCAGTACAGGAAGGAAAGATCTGCTATTTTCAACCTGCTCCACTACT
1 CTTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCACTACT
32180190 GCCCAGGGAGACAAGGCTGGTAT
66 GCCCAGGGAGACAAGGCTGGTAT
* *
32180213 CTTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTGAAGCTGCTCCA-TACT
1 CTTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCACTACT
*
32180277 GCCCAAAGG-GACAAGGCTGGTAT
66 GCCC-AGGGAGACAAGGCTGGTAT
* *
32180300 CTTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTCCACTACC
1 CTTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCACTACT
*
32180365 GCCTAGGGAGACAAGG
66 GCCCAGGGAGACAAGG
32180381 TTGAAGTTTT
Statistics
Matches: 317, Mismatches: 22, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
87 82 0.26
88 233 0.74
89 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (88 bp):
CTTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCACTACT
GCCCAGGGAGACAAGGCTGGTAT
Found at i:32180135 original size:43 final size:43
Alignment explanation
Indices: 32179995--32180224 Score: 147
Period size: 43 Copynumber: 5.3 Consensus size: 43
32179985 ATCTGTCATT
* *
32179995 TTCGACCTACTCCACTGCTGCCCAGGGAGACAAGGCTGGTATC
1 TTCGACCTGCTCCACTACTGCCCAGGGAGACAAGGCTGGTATC
* * * * * ** * * * ** *
32180038 TTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTACTATT
1 TTCGACCTGCTCCACT-ACTGCCCAGGGAGACAAG-GCTGGTATC
**
32180083 TTTAACCTGCTCCACTACTGCCCAGGGAGACAAGGCTGGTATC
1 TTCGACCTGCTCCACTACTGCCCAGGGAGACAAGGCTGGTATC
* * * * ** * * * *
32180126 TTCGACCTGCTTCTCTGTCAGTACAGGAAGGA-AAGATCTGCTATT
1 TTCGACCTGCTCCACT-ACTGCCCAGGGA-GACAAG-GCTGGTATC
*
32180171 TTCAACCTGCTCCACTACTGCCCAGGGAGACAAGGCTGGTATC
1 TTCGACCTGCTCCACTACTGCCCAGGGAGACAAGGCTGGTATC
*
32180214 TTCGATCTGCT
1 TTCGACCTGCT
32180225 TCTCTGTCAG
Statistics
Matches: 127, Mismatches: 54, Indels: 12
0.66 0.28 0.06
Matches are distributed among these distances:
43 46 0.36
44 44 0.35
45 37 0.29
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.27
Consensus pattern (43 bp):
TTCGACCTGCTCCACTACTGCCCAGGGAGACAAGGCTGGTATC
Found at i:32182171 original size:9 final size:9
Alignment explanation
Indices: 32182135--32182183 Score: 64
Period size: 9 Copynumber: 5.2 Consensus size: 9
32182125 CGGTAGAGGT
32182135 TTTTTGTTTC
1 TTTTT-TTTC
32182145 TTTTTGTTT-
1 TTTTT-TTTC
32182154 TTATTTTTTC
1 TT-TTTTTTC
32182164 TTTTTTTTC
1 TTTTTTTTC
32182173 TTTTTTTTC
1 TTTTTTTTC
32182182 TT
1 TT
32182184 ACCTTTTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
9 23 0.62
10 14 0.38
ACGTcount: A:0.02, C:0.08, G:0.04, T:0.86
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:32182178 original size:23 final size:23
Alignment explanation
Indices: 32182134--32182177 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
32182124 CCGGTAGAGG
*
32182134 TTTTTTGTTTCTTTTTGTTTTTA
1 TTTTTTCTTTCTTTTTGTTTTTA
*
32182157 TTTTTTCTTT-TTTTTCTTTTT
1 TTTTTTCTTTCTTTTTGTTTTT
32182178 TTTCTTACCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.02, C:0.07, G:0.05, T:0.86
Consensus pattern (23 bp):
TTTTTTCTTTCTTTTTGTTTTTA
Found at i:32182190 original size:28 final size:28
Alignment explanation
Indices: 32182134--32182194 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
32182124 CCGGTAGAGG
*
32182134 TTTTTTGTTTCTTTTTGTTTTTA-TTTT
1 TTTTTTGTTTCTTTTTGTTTTTACCTTT
*
32182161 TTCTTTTTTTTCTTTTT-TTTCTTACCTTT
1 TT-TTTTGTTTCTTTTTGTTT-TTACCTTT
32182190 TTTTT
1 TTTTT
32182195 AATCTGCACT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
27 5 0.17
28 19 0.66
29 5 0.17
ACGTcount: A:0.03, C:0.10, G:0.03, T:0.84
Consensus pattern (28 bp):
TTTTTTGTTTCTTTTTGTTTTTACCTTT
Found at i:32187050 original size:22 final size:23
Alignment explanation
Indices: 32187014--32187074 Score: 63
Period size: 23 Copynumber: 2.6 Consensus size: 23
32187004 TAATAATAAA
32187014 ATATATATATGAAAAA-A-ATGCAC
1 ATATAT-TAT-AAAAATATATGCAC
* *
32187037 ATGTATTTATAAAAATATATGCAT
1 ATATA-TTATAAAAATATATGCAC
32187061 ATATATTATAAAAA
1 ATATATTATAAAAA
32187075 GAAATACGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
22 5 0.16
23 17 0.53
24 10 0.31
ACGTcount: A:0.54, C:0.05, G:0.07, T:0.34
Consensus pattern (23 bp):
ATATATTATAAAAATATATGCAC
Found at i:32188794 original size:9 final size:9
Alignment explanation
Indices: 32188782--32188848 Score: 64
Period size: 9 Copynumber: 7.4 Consensus size: 9
32188772 TTTTGTTAAA
32188782 AATTAACCG
1 AATTAACCG
*
32188791 AATTAATCG
1 AATTAACCG
* *
32188800 GATT-ACTTG
1 AATTAAC-CG
*
32188809 AATTAATCG
1 AATTAACCG
*
32188818 AATTACCCG
1 AATTAACCG
*
32188827 AATTAATCG
1 AATTAACCG
32188836 AATTAACCG
1 AATTAACCG
32188845 AATT
1 AATT
32188849 GAATCACTAC
Statistics
Matches: 44, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
8 1 0.02
9 42 0.95
10 1 0.02
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.31
Consensus pattern (9 bp):
AATTAACCG
Found at i:32188811 original size:18 final size:18
Alignment explanation
Indices: 32188782--32188853 Score: 90
Period size: 18 Copynumber: 3.9 Consensus size: 18
32188772 TTTTGTTAAA
*
32188782 AATTAACCGAATTAATCG
1 AATTACCCGAATTAATCG
* **
32188800 GATTACTTGAATTAATCG
1 AATTACCCGAATTAATCG
32188818 AATTACCCGAATTAATCG
1 AATTACCCGAATTAATCG
*
32188836 AATTAACCGAATTGAATC
1 AATTACCCGAATT-AATC
32188854 ACTACATAAT
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
18 41 0.91
19 4 0.09
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (18 bp):
AATTACCCGAATTAATCG
Found at i:32188831 original size:27 final size:27
Alignment explanation
Indices: 32188782--32188848 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 27
32188772 TTTTGTTAAA
* * * *
32188782 AATTAACCGAATTAATCGGATTACTTG
1 AATTAACCGAATTAACCGAATTAATCG
* *
32188809 AATTAATCGAATTACCCGAATTAATCG
1 AATTAACCGAATTAACCGAATTAATCG
32188836 AATTAACCGAATT
1 AATTAACCGAATT
32188849 GAATCACTAC
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.31
Consensus pattern (27 bp):
AATTAACCGAATTAACCGAATTAATCG
Found at i:32188991 original size:18 final size:18
Alignment explanation
Indices: 32188951--32188994 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
32188941 AATTTTTATG
**
32188951 ATTGGGTTGGGTTGGGTA
1 ATTGGGTTGGGTTGAATA
32188969 ATTGGGTTGGGTTGAATA
1 ATTGGGTTGGGTTGAATA
*
32188987 CTTGGGTT
1 ATTGGGTT
32188995 TGGATTGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.14, C:0.02, G:0.43, T:0.41
Consensus pattern (18 bp):
ATTGGGTTGGGTTGAATA
Found at i:32189583 original size:24 final size:24
Alignment explanation
Indices: 32189550--32189597 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
32189540 AATTTAACAT
*
32189550 CATATAAACATTATCATATATCTA
1 CATATAAACATTACCATATATCTA
*
32189574 CATATGAACATTACCATATATCTA
1 CATATAAACATTACCATATATCTA
32189598 TGCCTTGACT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (24 bp):
CATATAAACATTACCATATATCTA
Found at i:32193385 original size:17 final size:17
Alignment explanation
Indices: 32193365--32193401 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
32193355 TTATTGTTTG
32193365 TTTATTTTAC-TTATTTA
1 TTTATTTT-CGTTATTTA
32193382 TTTATTTTCGTTATTTA
1 TTTATTTTCGTTATTTA
32193399 TTT
1 TTT
32193402 TTATCTCAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 1 0.05
17 18 0.95
ACGTcount: A:0.19, C:0.05, G:0.03, T:0.73
Consensus pattern (17 bp):
TTTATTTTCGTTATTTA
Found at i:32196039 original size:50 final size:50
Alignment explanation
Indices: 32195963--32196153 Score: 249
Period size: 50 Copynumber: 3.8 Consensus size: 50
32195953 TTTCTTGTAC
* * ** *
32195963 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATACT-GA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-CTCGG
* * **
32196013 TGCCCATGCCATGTCTCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
32196063 TGCCAATGCCATGTCCCAAACATGGTCATACATGGGACCTCTTATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
32196113 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGACCTC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTC
32196154 ATTCCCTTAA
Statistics
Matches: 121, Mismatches: 19, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
49 2 0.02
50 119 0.98
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:32203741 original size:50 final size:50
Alignment explanation
Indices: 32203687--32203838 Score: 180
Period size: 50 Copynumber: 3.0 Consensus size: 50
32203677 ACATAGGAGT
* * * *
32203687 TCTCATAC-CGGTGCCCATGCCATGTCTCAGATATGGTCTTACGGGGGACC
1 TCTCAT-CTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACC
* * * * *
32203737 TCTCATCTCGGTGCTAACGCCATGTCCCAAACATGGTCATACATGGGACC
1 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACC
* * *
32203787 TCTTATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTATATGGGACC
1 TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACC
32203837 TC
1 TC
32203839 ATTCCCTTAA
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
49 1 0.01
50 85 0.99
ACGTcount: A:0.20, C:0.30, G:0.22, T:0.27
Consensus pattern (50 bp):
TCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACC
Found at i:32214723 original size:26 final size:25
Alignment explanation
Indices: 32214693--32214779 Score: 86
Period size: 25 Copynumber: 3.4 Consensus size: 25
32214683 AATTCATATT
32214693 CAGGAATGCTCATCTGAGCACATA-AA
1 CAGGAA-GCTCATCTGAGC-CATATAA
*
32214719 CAGGAAGCTCTCTCTCGAGCCATATAA
1 CAGGAAGCTC-ATCT-GAGCCATATAA
* **
32214746 CAGGAAGCTCATCTGAACTGTATAA
1 CAGGAAGCTCATCTGAGCCATATAA
*
32214771 CGGGAAGCT
1 CAGGAAGCT
32214780 TATTCAAGCT
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
25 20 0.38
26 16 0.31
27 16 0.31
ACGTcount: A:0.33, C:0.24, G:0.22, T:0.21
Consensus pattern (25 bp):
CAGGAAGCTCATCTGAGCCATATAA
Found at i:32214776 original size:25 final size:25
Alignment explanation
Indices: 32214741--32214807 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
32214731 TCTCGAGCCA
*
32214741 TATAACAGGAAGCTCATCTGAA-CTG
1 TATAACAGGAAGCTCAT-TCAAGCTG
* *
32214766 TATAACGGGAAGCTTATTCAAGCTG
1 TATAACAGGAAGCTCATTCAAGCTG
*
32214791 TATACCAGGAAGCTCAT
1 TATAACAGGAAGCTCAT
32214808 GCGAGCCAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
24 3 0.09
25 32 0.91
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.25
Consensus pattern (25 bp):
TATAACAGGAAGCTCATTCAAGCTG
Found at i:32220836 original size:47 final size:47
Alignment explanation
Indices: 32220770--32221245 Score: 801
Period size: 47 Copynumber: 10.1 Consensus size: 47
32220760 GAAATGATAG
32220770 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
32220817 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
32220864 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
32220913 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
32220960 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
32221007 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
32221054 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
32221101 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
32221148 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * *
32221195 -AAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAA-GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
32221242 TAAG
1 TAAG
32221246 TCCCGAAGGG
Statistics
Matches: 410, Mismatches: 15, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
46 2 0.00
47 359 0.88
48 2 0.00
49 47 0.11
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:32221420 original size:37 final size:37
Alignment explanation
Indices: 32221364--32221442 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
32221354 CCGAGCTCTA
* *
32221364 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
32221401 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
32221438 AAGAC
1 AAGAC
32221443 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Done.