Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 107 of 207
Found at i:32226997 original size:109 final size:109
Alignment explanation
Indices: 32226806--32227026 Score: 442
Period size: 109 Copynumber: 2.0 Consensus size: 109
32226796 CATTTTCATC
32226806 ATTTAGTATTTAGGTAGTAAAAGTTAATAAAATAAGTGTTTTCACACATTCTGCAAGTGTTAGTG
1 ATTTAGTATTTAGGTAGTAAAAGTTAATAAAATAAGTGTTTTCACACATTCTGCAAGTGTTAGTG
32226871 ACCTATTAGGCCAACACGGGCCTTAGGTAGTTCTAATGTGTTTA
66 ACCTATTAGGCCAACACGGGCCTTAGGTAGTTCTAATGTGTTTA
32226915 ATTTAGTATTTAGGTAGTAAAAGTTAATAAAATAAGTGTTTTCACACATTCTGCAAGTGTTAGTG
1 ATTTAGTATTTAGGTAGTAAAAGTTAATAAAATAAGTGTTTTCACACATTCTGCAAGTGTTAGTG
32226980 ACCTATTAGGCCAACACGGGCCTTAGGTAGTTCTAATGTGTTTA
66 ACCTATTAGGCCAACACGGGCCTTAGGTAGTTCTAATGTGTTTA
32227024 ATT
1 ATT
32227027 AAGTGCATAG
Statistics
Matches: 112, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
109 112 1.00
ACGTcount: A:0.31, C:0.13, G:0.20, T:0.36
Consensus pattern (109 bp):
ATTTAGTATTTAGGTAGTAAAAGTTAATAAAATAAGTGTTTTCACACATTCTGCAAGTGTTAGTG
ACCTATTAGGCCAACACGGGCCTTAGGTAGTTCTAATGTGTTTA
Found at i:32232745 original size:13 final size:13
Alignment explanation
Indices: 32232727--32232752 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32232717 AATTAAAAAT
32232727 TATTGAAGATAAA
1 TATTGAAGATAAA
32232740 TATTGAAGATAAA
1 TATTGAAGATAAA
32232753 AAAAATAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.15, T:0.31
Consensus pattern (13 bp):
TATTGAAGATAAA
Found at i:32242125 original size:23 final size:23
Alignment explanation
Indices: 32242099--32242220 Score: 165
Period size: 23 Copynumber: 5.3 Consensus size: 23
32242089 ATAAGTAACA
32242099 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* * *
32242122 CACTGATACGTAGTCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
32242145 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
32242168 CACTGATATGTAGCC-ATAGCTAC
1 CACTGATATGTAGCCGA-AGCTAC
* * *
32242191 CATTGAAATGTAACCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
32242214 CACTGAT
1 CACTGAT
32242221 CAATAACACT
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
22 1 0.01
23 82 0.98
24 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:32242166 original size:46 final size:46
Alignment explanation
Indices: 32242099--32242220 Score: 190
Period size: 46 Copynumber: 2.7 Consensus size: 46
32242089 ATAAGTAACA
* * *
32242099 CACTGATATGTAGCCGAAGCTACCACTGATACGTAGTCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGATACGTAGCCATAGCTAC
*
32242145 CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGCCATAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGATACGTAGCCATAGCTAC
* *
32242191 CATTGAAATGTAACCGAAGCTACCACTGAT
1 CACTGAAATGTAGCCGAAGCTACCACTGAT
32242221 CAATAACACT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (46 bp):
CACTGAAATGTAGCCGAAGCTACCACTGATACGTAGCCATAGCTAC
Found at i:32247930 original size:21 final size:21
Alignment explanation
Indices: 32247885--32247947 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
32247875 TTTGAACCAT
* *
32247885 TACCAATTCGTACCAAATGCCA
1 TACCATTTCGTACC-AATTCCA
32247907 TACCATTTCGTACCAATTCCA
1 TACCATTTCGTACCAATTCCA
* *
32247928 TACTATTTCGAACCAATTCC
1 TACCATTTCGTACCAATTCC
32247948 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 24 0.65
22 13 0.35
ACGTcount: A:0.32, C:0.32, G:0.06, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:32248281 original size:12 final size:13
Alignment explanation
Indices: 32248262--32248297 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
32248252 AAAGGAGTTC
32248262 GAAAAAAAAAATT
1 GAAAAAAAAAATT
*
32248275 GAGAAAAAAAATT
1 GAAAAAAAAAATT
32248288 GAAAAAAAAA
1 GAAAAAAAAA
32248298 TTGCATACGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (13 bp):
GAAAAAAAAAATT
Found at i:32248298 original size:12 final size:12
Alignment explanation
Indices: 32248264--32248300 Score: 65
Period size: 12 Copynumber: 3.0 Consensus size: 12
32248254 AGGAGTTCGA
32248264 AAAAAAAAATTG
1 AAAAAAAAATTG
32248276 AGAAAAAAAATTG
1 A-AAAAAAAATTG
32248289 AAAAAAAAATTG
1 AAAAAAAAATTG
32248301 CATACGGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 12 0.50
13 12 0.50
ACGTcount: A:0.73, C:0.00, G:0.11, T:0.16
Consensus pattern (12 bp):
AAAAAAAAATTG
Found at i:32252801 original size:21 final size:21
Alignment explanation
Indices: 32252756--32252818 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
32252746 TTTGAACCAT
* *
32252756 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
32252778 TACCATTTCGTACCAATTCCA
1 TACCATTTCGTACCAATTCCA
* *
32252799 TACTATTTCGAACCAATTCC
1 TACCATTTCGTACCAATTCC
32252819 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 24 0.65
22 13 0.35
ACGTcount: A:0.33, C:0.32, G:0.05, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:32264141 original size:108 final size:108
Alignment explanation
Indices: 32263952--32264170 Score: 411
Period size: 108 Copynumber: 2.0 Consensus size: 108
32263942 ATACAACATA
*
32263952 CTTGTAAAATAAAATATGTTATGTTTTATTCTTTAGTCGATTGTTAAAAAATGAACCTTGTCGCA
1 CTTGTAAAATAAAATATGTTATGTTTTATTCTTTAGTCGATTGTTAAAAAACGAACCTTGTCGCA
32264017 TAAGTAAAATTTCAAATAAGATTACTGGAACAACTATTGTTCC
66 TAAGTAAAATTTCAAATAAGATTACTGGAACAACTATTGTTCC
32264060 CTTGTAAAATAAAATATGTTATGTTTTATTCTTTAGTCGATTGTTAAAAAACGAACCTTGTCGCA
1 CTTGTAAAATAAAATATGTTATGTTTTATTCTTTAGTCGATTGTTAAAAAACGAACCTTGTCGCA
* *
32264125 TAAGTAAATTTTCAAATAAGATTACTGGAGCAACTATTGTTCC
66 TAAGTAAAATTTCAAATAAGATTACTGGAACAACTATTGTTCC
32264168 CTT
1 CTT
32264171 TCGGAAATTC
Statistics
Matches: 108, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
108 108 1.00
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (108 bp):
CTTGTAAAATAAAATATGTTATGTTTTATTCTTTAGTCGATTGTTAAAAAACGAACCTTGTCGCA
TAAGTAAAATTTCAAATAAGATTACTGGAACAACTATTGTTCC
Found at i:32265992 original size:28 final size:28
Alignment explanation
Indices: 32265950--32266005 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
32265940 GTATACTTTG
32265950 ACAATATTTACATATAAATTCATGAGTA
1 ACAATATTTACATATAAATTCATGAGTA
*
32265978 ACAATATTTATATATAAATTCATGAGTA
1 ACAATATTTACATATAAATTCATGAGTA
32266006 TGAGGAAGCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.46, C:0.09, G:0.07, T:0.38
Consensus pattern (28 bp):
ACAATATTTACATATAAATTCATGAGTA
Found at i:32272352 original size:23 final size:22
Alignment explanation
Indices: 32272322--32272368 Score: 76
Period size: 23 Copynumber: 2.1 Consensus size: 22
32272312 TTTTAGCGTT
32272322 TGAAGAAGAACCACTTGTAGGTC
1 TGAAGAAGAACCACTTGTA-GTC
*
32272345 TGAAGAAGAACCTCTTGTAGTC
1 TGAAGAAGAACCACTTGTAGTC
32272367 TG
1 TG
32272369 TGTTATACCT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 5 0.22
23 18 0.78
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.26
Consensus pattern (22 bp):
TGAAGAAGAACCACTTGTAGTC
Found at i:32273161 original size:16 final size:17
Alignment explanation
Indices: 32273132--32273163 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
32273122 AAGTTTAGGG
32273132 GGGAAATAAAAAGTTTT
1 GGGAAATAAAAAGTTTT
32273149 GGGAAAT-AAAAGTTT
1 GGGAAATAAAAAGTTT
32273164 GAGGGAAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.47, C:0.00, G:0.25, T:0.28
Consensus pattern (17 bp):
GGGAAATAAAAAGTTTT
Found at i:32273169 original size:17 final size:16
Alignment explanation
Indices: 32273132--32273176 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 16
32273122 AAGTTTAGGG
*
32273132 GGGAAATAAAAAGTTTT
1 GGGAAAT-AAAAGTTTA
32273149 GGGAAATAAAAGTTTGA
1 GGGAAATAAAAGTTT-A
32273166 GGGAAAGTAAA
1 GGGAAA-TAAA
32273177 TAGGGGGAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 8 0.32
17 13 0.52
18 4 0.16
ACGTcount: A:0.49, C:0.00, G:0.29, T:0.22
Consensus pattern (16 bp):
GGGAAATAAAAGTTTA
Found at i:32273468 original size:23 final size:22
Alignment explanation
Indices: 32273438--32273484 Score: 76
Period size: 23 Copynumber: 2.1 Consensus size: 22
32273428 AGTAAAATTT
32273438 TGAAGAAGAACCACTTGTAGGTC
1 TGAAGAAGAACCACTTGTA-GTC
*
32273461 TGAAGAAGAACCTCTTGTAGTC
1 TGAAGAAGAACCACTTGTAGTC
32273483 TG
1 TG
32273485 TGTTATACCT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 5 0.22
23 18 0.78
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.26
Consensus pattern (22 bp):
TGAAGAAGAACCACTTGTAGTC
Found at i:32274277 original size:16 final size:17
Alignment explanation
Indices: 32274248--32274279 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
32274238 AAGTTTAGGG
32274248 GGGAAATAAAAAGTTTT
1 GGGAAATAAAAAGTTTT
32274265 GGGAAAT-AAAAGTTT
1 GGGAAATAAAAAGTTT
32274280 GAGGGAAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.47, C:0.00, G:0.25, T:0.28
Consensus pattern (17 bp):
GGGAAATAAAAAGTTTT
Found at i:32274285 original size:17 final size:16
Alignment explanation
Indices: 32274248--32274292 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 16
32274238 AAGTTTAGGG
*
32274248 GGGAAATAAAAAGTTTT
1 GGGAAAT-AAAAGTTTA
32274265 GGGAAATAAAAGTTTGA
1 GGGAAATAAAAGTTT-A
32274282 GGGAAAGTAAA
1 GGGAAA-TAAA
32274293 TAGGGGGAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 8 0.32
17 13 0.52
18 4 0.16
ACGTcount: A:0.49, C:0.00, G:0.29, T:0.22
Consensus pattern (16 bp):
GGGAAATAAAAGTTTA
Found at i:32274663 original size:9 final size:9
Alignment explanation
Indices: 32274645--32274681 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
32274635 TATAGTTTGA
*
32274645 TATTCAAAT
1 TATTCGAAT
32274654 TATTCGAAT
1 TATTCGAAT
*
32274663 TATTCGAGT
1 TATTCGAAT
32274672 TATTCGAAT
1 TATTCGAAT
32274681 T
1 T
32274682 CGAAAACTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:32274749 original size:9 final size:9
Alignment explanation
Indices: 32274732--32274771 Score: 71
Period size: 9 Copynumber: 4.4 Consensus size: 9
32274722 TCGAGTTGAT
32274732 TCGAATAAC
1 TCGAATAAC
*
32274741 TCGATTAAC
1 TCGAATAAC
32274750 TCGAATAAC
1 TCGAATAAC
32274759 TCGAATAAC
1 TCGAATAAC
32274768 TCGA
1 TCGA
32274772 TTCGTTTAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.40, C:0.23, G:0.12, T:0.25
Consensus pattern (9 bp):
TCGAATAAC
Found at i:32274900 original size:72 final size:73
Alignment explanation
Indices: 32274773--32274920 Score: 253
Period size: 72 Copynumber: 2.0 Consensus size: 73
32274763 ATAACTCGAT
*
32274773 TCGTTTAACTCAAAATACGATTTTTTATTTTATTTTTTCGAGTCGAATCGAGTTTTGCTCACTCC
1 TCGTTTAACTCAAAATACGAATTTTTATTTTATTTTTTCGAGTCGAATCGAGTTTTGCTCACTCC
32274838 TAGCTACA
66 TAGCTACA
* *
32274846 TCGTTTAACTCGAAATACGAATTTTT-TTTTATTTTTTCGAGTCGAATCGAGTTTTGCTCACTTC
1 TCGTTTAACTCAAAATACGAATTTTTATTTTATTTTTTCGAGTCGAATCGAGTTTTGCTCACTCC
*
32274910 TAGTTACA
66 TAGCTACA
32274918 TCG
1 TCG
32274921 CCTTCAAGTC
Statistics
Matches: 71, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
72 47 0.66
73 24 0.34
ACGTcount: A:0.24, C:0.18, G:0.14, T:0.45
Consensus pattern (73 bp):
TCGTTTAACTCAAAATACGAATTTTTATTTTATTTTTTCGAGTCGAATCGAGTTTTGCTCACTCC
TAGCTACA
Found at i:32278478 original size:22 final size:24
Alignment explanation
Indices: 32278453--32278499 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
32278443 CTTATGGTAT
*
32278453 AATAATCTTGA-AATTTT-TTTTA
1 AATAATCTTCACAATTTTATTTTA
*
32278475 AATATTCTTCACAATTTTATTTTA
1 AATAATCTTCACAATTTTATTTTA
32278499 A
1 A
32278500 TATAGTTGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 9 0.43
23 6 0.29
24 6 0.29
ACGTcount: A:0.36, C:0.09, G:0.02, T:0.53
Consensus pattern (24 bp):
AATAATCTTCACAATTTTATTTTA
Found at i:32282868 original size:60 final size:60
Alignment explanation
Indices: 32282773--32282887 Score: 212
Period size: 60 Copynumber: 1.9 Consensus size: 60
32282763 ACAAAGAAGC
* *
32282773 AAATTGGGCTTAATAAATAAACAAAATAAAGTAAAATAAAACTCGTGCTTATCCAGAAAT
1 AAATTGGGCCTAATAAATAAACAAAATAAAATAAAATAAAACTCGTGCTTATCCAGAAAT
32282833 AAATTGGGCCTAATAAATAAACAAAATAAAATAAAATAAAACTCGTGCTTATCCA
1 AAATTGGGCCTAATAAATAAACAAAATAAAATAAAATAAAACTCGTGCTTATCCA
32282888 AACCCAGTCA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
60 53 1.00
ACGTcount: A:0.52, C:0.13, G:0.10, T:0.24
Consensus pattern (60 bp):
AAATTGGGCCTAATAAATAAACAAAATAAAATAAAATAAAACTCGTGCTTATCCAGAAAT
Found at i:32291780 original size:43 final size:42
Alignment explanation
Indices: 32291612--32291780 Score: 164
Period size: 43 Copynumber: 4.0 Consensus size: 42
32291602 CATAATAGCT
* * *
32291612 CATACAATGCC-ATATCCCAGATATGGTCTTA-ATGTTATCA
1 CATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
* * * * * *
32291652 CATATCGATGCCACTG-CCCAGACAGGGTCTTATACGAAATCA
1 CATA-CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
* * *
32291694 TATGACGATGCCGATGTCCCAGACATGGTCTTACATGTAATCA
1 CAT-ACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
* *
32291737 CAATACAATGTCAATGTCCCAGACATGGTCTTACATGTTATCA
1 C-ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
32291780 C
1 C
32291781 CTCTCAGTAA
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
40 4 0.04
41 20 0.19
42 18 0.17
43 59 0.57
44 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.28
Consensus pattern (42 bp):
CATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
Found at i:32295672 original size:24 final size:23
Alignment explanation
Indices: 32295589--32295670 Score: 98
Period size: 23 Copynumber: 3.6 Consensus size: 23
32295579 TTATTATTGG
* *
32295589 TTTTATAAAATTTTAAATGTATA
1 TTTTTTAAAATTTTAAATATATA
*
32295612 --TTTTAAATGTTTTATAATAT-TA
1 TTTTTTAAA-ATTTTA-AATATATA
32295634 TTTTTTAAAATTTTAAATATATA
1 TTTTTTAAAATTTTAAATATATA
32295657 TTTTTTAAAATTTT
1 TTTTTTAAAATTTT
32295671 TATTTTTTAA
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
21 6 0.12
22 12 0.24
23 25 0.50
24 7 0.14
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (23 bp):
TTTTTTAAAATTTTAAATATATA
Found at i:32295683 original size:15 final size:15
Alignment explanation
Indices: 32295644--32295683 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
32295634 TTTTTTAAAA
*
32295644 TTTTAAATATATATT
1 TTTTAAATTTATATT
*
32295659 TTTTAAAATTTTTATT
1 TTTT-AAATTTATATT
32295675 TTTTAAATT
1 TTTTAAATT
32295684 CTAAATATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTTAAATTTATATT
Found at i:32295717 original size:21 final size:22
Alignment explanation
Indices: 32295623--32295716 Score: 69
Period size: 22 Copynumber: 4.5 Consensus size: 22
32295613 TTTAAATGTT
*
32295623 TTAT-AATATTATTTTTTAAAA
1 TTATAAATATTATTTTTTTAAA
*
32295644 TTTTAAATA-TATATTTTTTAAA
1 TTATAAATATTAT-TTTTTTAAA
*
32295666 --AT---TTTTA-TTTTTTAAA
1 TTATAAATATTATTTTTTTAAA
*
32295682 TTCTAAATATTATTTTTTTAATA
1 TTATAAATATTATTTTTTTAA-A
32295705 TTATAAAATATT
1 TTAT-AAATATT
32295717 TAAATATATT
Statistics
Matches: 55, Mismatches: 7, Indels: 19
0.68 0.09 0.23
Matches are distributed among these distances:
16 9 0.16
17 1 0.02
18 3 0.05
20 1 0.02
21 10 0.18
22 20 0.36
23 4 0.07
24 7 0.13
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (22 bp):
TTATAAATATTATTTTTTTAAA
Found at i:32295797 original size:22 final size:22
Alignment explanation
Indices: 32295763--32295829 Score: 79
Period size: 22 Copynumber: 3.2 Consensus size: 22
32295753 TTATTATTTG
* *
32295763 TTTTATAATATTTTAAATGTATA
1 TTTTA-AAAATTTTAAATATATA
32295786 TTTTAAAAATTTTAAATATATA
1 TTTTAAAAATTTTAAATATATA
32295808 TTTT---AATTTTAAATATA-A
1 TTTTAAAAATTTTAAATATATA
32295826 TTTT
1 TTTT
32295830 TTAATTATTT
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
18 5 0.12
19 13 0.31
22 19 0.45
23 5 0.12
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (22 bp):
TTTTAAAAATTTTAAATATATA
Found at i:32295982 original size:13 final size:13
Alignment explanation
Indices: 32295966--32296018 Score: 52
Period size: 13 Copynumber: 3.7 Consensus size: 13
32295956 TAAAAAAGAG
*
32295966 ATTAAAAATACAT
1 ATTAAAAATATAT
32295979 ATTAAAAAAGTTATATAT
1 ATT-AAAAA--TA--TAT
32295997 ATTAAAAATATAT
1 ATTAAAAATATAT
32296010 ATTAAAAAT
1 ATTAAAAAT
32296019 TAAAAATATA
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
13 15 0.44
14 5 0.15
15 2 0.06
16 2 0.06
17 5 0.15
18 5 0.15
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (13 bp):
ATTAAAAATATAT
Found at i:32296033 original size:13 final size:13
Alignment explanation
Indices: 32295991--32296018 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
32295981 TAAAAAAGTT
32295991 ATATATATTAAAA
1 ATATATATTAAAA
32296004 ATATATATTAAAA
1 ATATATATTAAAA
32296017 AT
1 AT
32296019 TAAAAATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
ATATATATTAAAA
Found at i:32300330 original size:30 final size:30
Alignment explanation
Indices: 32300294--32300395 Score: 123
Period size: 30 Copynumber: 3.4 Consensus size: 30
32300284 CATAGAGCAA
*
32300294 TTCATATCATCCGGATATGGGCGGTTTGAG
1 TTCATATCACCCGGATATGGGCGGTTTGAG
* * * *
32300324 TTCATATCACCCGAACATGGGTGGTTCGAG
1 TTCATATCACCCGGATATGGGCGGTTTGAG
* * * *
32300354 TTCATATCAGCCGGATATGGGCAGCTTAAG
1 TTCATATCACCCGGATATGGGCGGTTTGAG
32300384 TTCATATCACCC
1 TTCATATCACCC
32300396 AGAGCAACCA
Statistics
Matches: 58, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 58 1.00
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.29
Consensus pattern (30 bp):
TTCATATCACCCGGATATGGGCGGTTTGAG
Found at i:32302729 original size:23 final size:24
Alignment explanation
Indices: 32302701--32302760 Score: 95
Period size: 23 Copynumber: 2.5 Consensus size: 24
32302691 TGAAGTTGGA
*
32302701 TTTGGTACGAAATGGTATGG-GGT
1 TTTGGTACGAAATGGTATGGAAGT
*
32302724 TTTGGTACGAAATGGTATGGAATT
1 TTTGGTACGAAATGGTATGGAAGT
32302748 TTTGGTACGAAAT
1 TTTGGTACGAAAT
32302761 AAACCAAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
23 20 0.59
24 14 0.41
ACGTcount: A:0.27, C:0.05, G:0.32, T:0.37
Consensus pattern (24 bp):
TTTGGTACGAAATGGTATGGAAGT
Found at i:32306973 original size:15 final size:14
Alignment explanation
Indices: 32306953--32307001 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
32306943 TCACTCGCTT
32306953 TTTCTTTGTCATCTC
1 TTTCTTT-TCATCTC
*
32306968 TTTCTTTTC-TCAC
1 TTTCTTTTCATCTC
32306981 TTT-TTTTCACTCTC
1 TTTCTTTTCA-TCTC
32306995 TTT-TTTT
1 TTTCTTTT
32307002 GATTTTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
12 5 0.17
13 6 0.20
14 12 0.40
15 7 0.23
ACGTcount: A:0.06, C:0.24, G:0.02, T:0.67
Consensus pattern (14 bp):
TTTCTTTTCATCTC
Found at i:32307017 original size:19 final size:20
Alignment explanation
Indices: 32306993--32307037 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
32306983 TTTTTCACTC
* *
32306993 TCTTTTTTTGATTTTT-TTT
1 TCTTTTTCTCATTTTTATTT
32307012 TCTTTTTCTCATTTTTATTT
1 TCTTTTTCTCATTTTTATTT
*
32307032 TATTTT
1 TCTTTT
32307038 GTAGTTTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.09, C:0.09, G:0.02, T:0.80
Consensus pattern (20 bp):
TCTTTTTCTCATTTTTATTT
Found at i:32309588 original size:24 final size:24
Alignment explanation
Indices: 32309528--32309588 Score: 81
Period size: 23 Copynumber: 2.6 Consensus size: 24
32309518 ATAGAGTTGG
*
32309528 TTTTGGTACGAAATGGTATGGGGA
1 TTTTGGTACGAAATGGTATGGGAA
32309552 -TTTGGTACGAAATGGTAT-GGAA
1 TTTTGGTACGAAATGGTATGGGAA
*
32309574 TTTTTGGTACAAAAT
1 -TTTTGGTACGAAAT
32309589 AAACCAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
22 3 0.09
23 18 0.55
24 12 0.36
ACGTcount: A:0.30, C:0.05, G:0.30, T:0.36
Consensus pattern (24 bp):
TTTTGGTACGAAATGGTATGGGAA
Found at i:32312354 original size:14 final size:15
Alignment explanation
Indices: 32312321--32312369 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
32312311 TTTGAATATC
32312321 TTTAAAAATA--AT-
1 TTTAAAAATATTATA
*
32312333 TTTAAAAA-ATCATAA
1 TTTAAAAATATTAT-A
32312348 TTTAAAAATATTATA
1 TTTAAAAATATTATA
32312363 TTTAAAA
1 TTTAAAA
32312370 TTTAATAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
11 1 0.03
12 8 0.26
13 2 0.06
15 16 0.52
16 4 0.13
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (15 bp):
TTTAAAAATATTATA
Found at i:32312374 original size:22 final size:21
Alignment explanation
Indices: 32312346--32312564 Score: 67
Period size: 21 Copynumber: 10.1 Consensus size: 21
32312336 AAAAAATCAT
32312346 AATTTAAAAATATTATATTTAA
1 AATTTAAAAATA-TATATTTAA
* * *
32312368 AATTTAATAATAATTAAAATTAA
1 AATTTAAAAAT-A-TATATTTAA
* * *
32312391 AA-ATATATATATATATTTTAA
1 AATTTAAAAATATATA-TTTAA
* *
32312412 AATTTTAAAATATACATTTAA
1 AATTTAAAAATATATATTTAA
* * *
32312433 AATATTATAAAACAAATA-AT-A
1 AAT-TTA-AAAATATATATTTAA
** *
32312454 AATTTGAAAGCTCATATCTTTAA
1 AATTT-AAAAAT-ATATATTTAA
* * * *
32312477 AA-ATAATATATTTTTAATATTTTAT
1 AATTTAA-A-A-ATAT-ATA-TTTAA
32312502 AATATTAAAAATA-ATATTTAA
1 AAT-TTAAAAATATATATTTAA
*
32312523 AATTTTAAAAATA-ACATTTAA
1 AA-TTTAAAAATATATATTTAA
*
32312544 ATTTTAAAAA-ATA-ATTTAA
1 AATTTAAAAATATATATTTAA
32312563 AA
1 AA
32312565 AATACATTTA
Statistics
Matches: 141, Mismatches: 38, Indels: 39
0.65 0.17 0.18
Matches are distributed among these distances:
19 8 0.06
20 16 0.11
21 48 0.34
22 32 0.23
23 22 0.16
24 4 0.03
25 7 0.05
26 1 0.01
27 3 0.02
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.42
Consensus pattern (21 bp):
AATTTAAAAATATATATTTAA
Found at i:32312521 original size:21 final size:20
Alignment explanation
Indices: 32312491--32312558 Score: 82
Period size: 21 Copynumber: 3.2 Consensus size: 20
32312481 AATATATTTT
*
32312491 TAATATTTTATAATATTAAAAA
1 TAATA-TTTA-AATTTTAAAAA
32312513 TAATATTTAAAATTTTAAAAA
1 TAATATTT-AAATTTTAAAAA
*
32312534 TAACATTTAAATTTTAAAAAA
1 TAATATTTAAATTTT-AAAAA
32312555 TAAT
1 TAAT
32312559 TTAAAAAATA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
20 7 0.17
21 28 0.68
22 6 0.15
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (20 bp):
TAATATTTAAATTTTAAAAA
Found at i:32312566 original size:33 final size:33
Alignment explanation
Indices: 32312523--32312600 Score: 104
Period size: 33 Copynumber: 2.3 Consensus size: 33
32312513 TAATATTTAA
*
32312523 AATTTTAAAAATAACATTT-AAATTTTAAAAAAT
1 AATTTAAAAAAT-ACATTTAAAATTTTAAAAAAT
*
32312556 AATTTAAAAAATACATTTAAAATTTTTAAAAAT
1 AATTTAAAAAATACATTTAAAATTTTAAAAAAT
*
32312589 AATATTATAAAA
1 AAT-TTAAAAAA
32312601 CATTTCAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
32 6 0.15
33 27 0.68
34 7 0.17
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (33 bp):
AATTTAAAAAATACATTTAAAATTTTAAAAAAT
Found at i:32312583 original size:22 final size:22
Alignment explanation
Indices: 32312558--32312632 Score: 62
Period size: 23 Copynumber: 3.3 Consensus size: 22
32312548 TAAAAAATAA
32312558 TTTAAAAAATACATTTAAAATT
1 TTTAAAAAATACATTTAAAATT
* **
32312580 TTT-AAAAATAATATTATAAAACA
1 TTTAAAAAAT-ACATT-TAAAATT
* * *
32312603 TTTCAAATATACATTTCAAATT
1 TTTAAAAAATACATTTAAAATT
32312625 TTATAAAA
1 TT-TAAAA
32312633 CCAATAATAA
Statistics
Matches: 40, Mismatches: 9, Indels: 7
0.71 0.16 0.12
Matches are distributed among these distances:
21 6 0.15
22 13 0.32
23 16 0.40
24 5 0.12
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (22 bp):
TTTAAAAAATACATTTAAAATT
Found at i:32312604 original size:32 final size:31
Alignment explanation
Indices: 32312526--32312610 Score: 100
Period size: 32 Copynumber: 2.6 Consensus size: 31
32312516 TATTTAAAAT
32312526 TTTAAAAATAACATTTAAATTTTAAAAAATAA
1 TTTAAAAA-AACATTTAAATTTTAAAAAATAA
*
32312558 TTTAAAAAATACATTTAAAATTTTTAAAAATAA
1 TTTAAAAAA-ACATTT-AAATTTTAAAAAATAA
*
32312591 TATT-ATAAAACATTTCAAAT
1 T-TTAAAAAAACATTT-AAAT
32312611 ATACATTTCA
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
31 1 0.02
32 24 0.51
33 20 0.43
34 2 0.04
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (31 bp):
TTTAAAAAAACATTTAAATTTTAAAAAATAA
Found at i:32312719 original size:24 final size:23
Alignment explanation
Indices: 32312653--32312719 Score: 80
Period size: 24 Copynumber: 2.8 Consensus size: 23
32312643 ACAAATAAAT
* *
32312653 AAAAGACAAATAAAAAAAACTTA
1 AAAAGAAAAAAAAAAAAAACTTA
* *
32312676 AAAAGTAAATAAATAAAAAACTTA
1 AAAAG-AAAAAAAAAAAAAACTTA
32312700 AAAAGAAAAAAAAAAGAAAA
1 AAAAGAAAAAAAAAA-AAAA
32312720 ACAACATAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
23 13 0.36
24 23 0.64
ACGTcount: A:0.78, C:0.04, G:0.06, T:0.12
Consensus pattern (23 bp):
AAAAGAAAAAAAAAAAAAACTTA
Found at i:32314909 original size:50 final size:50
Alignment explanation
Indices: 32314802--32314911 Score: 139
Period size: 50 Copynumber: 2.2 Consensus size: 50
32314792 TGAGAGGTCA
* * * * * **
32314802 CATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGATATGTGAGGTCC
1 CATGTAAGACCATGTATGAGACATGGCATGGGCACCGATATGAGAACTCC
**
32314852 CCCGTAAGACCATGTATGAGACATGGCATGGGCACCGATATGAGAACTCC
1 CATGTAAGACCATGTATGAGACATGGCATGGGCACCGATATGAGAACTCC
32314902 CATGTAAGAC
1 CATGTAAGAC
32314912 TAGGGGTGTT
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (50 bp):
CATGTAAGACCATGTATGAGACATGGCATGGGCACCGATATGAGAACTCC
Found at i:32315095 original size:9 final size:9
Alignment explanation
Indices: 32315081--32315147 Score: 116
Period size: 9 Copynumber: 7.4 Consensus size: 9
32315071 TTTGGTTAAA
32315081 AATTAACCG
1 AATTAACCG
32315090 AATTAACCG
1 AATTAACCG
*
32315099 AATTAACCA
1 AATTAACCG
32315108 AATTAACCG
1 AATTAACCG
*
32315117 AATTACCCG
1 AATTAACCG
32315126 AATTAACCG
1 AATTAACCG
32315135 AATTAACCG
1 AATTAACCG
32315144 AATT
1 AATT
32315148 GAATCACTAC
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 54 1.00
ACGTcount: A:0.45, C:0.22, G:0.09, T:0.24
Consensus pattern (9 bp):
AATTAACCG
Found at i:32315290 original size:18 final size:18
Alignment explanation
Indices: 32315250--32315293 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
32315240 AATTTTTATG
**
32315250 ATTGGGTTGGGTTGGGTA
1 ATTGGGTTGGGTTGAATA
32315268 ATTGGGTTGGGTTGAATA
1 ATTGGGTTGGGTTGAATA
*
32315286 CTTGGGTT
1 ATTGGGTT
32315294 TGGATTGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.14, C:0.02, G:0.43, T:0.41
Consensus pattern (18 bp):
ATTGGGTTGGGTTGAATA
Found at i:32319750 original size:18 final size:17
Alignment explanation
Indices: 32319724--32319759 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
32319714 TTTGGTTATA
32319724 TTTAATTTTCGATATGTT
1 TTTAATTTT-GATATGTT
*
32319742 TTTATTTTTGATATGTT
1 TTTAATTTTGATATGTT
32319759 T
1 T
32319760 CATTTAAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.19, C:0.03, G:0.11, T:0.67
Consensus pattern (17 bp):
TTTAATTTTGATATGTT
Found at i:32324430 original size:16 final size:16
Alignment explanation
Indices: 32324409--32324442 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
32324399 CAACTCATTC
32324409 TTGATCCTCTTTATTG
1 TTGATCCTCTTTATTG
32324425 TTGATCCTCTTTATTG
1 TTGATCCTCTTTATTG
32324441 TT
1 TT
32324443 CGTGATCTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.12, C:0.18, G:0.12, T:0.59
Consensus pattern (16 bp):
TTGATCCTCTTTATTG
Found at i:32329147 original size:21 final size:21
Alignment explanation
Indices: 32329106--32329148 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
32329096 AATAAAGTAG
*
32329106 ATTATATATTATTTTTATAGT
1 ATTATATATTATATTTATAGT
32329127 ATTATATATTATGATTT-TAGT
1 ATTATATATTAT-ATTTATAGT
32329148 A
1 A
32329149 AATTCATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (21 bp):
ATTATATATTATATTTATAGT
Found at i:32329201 original size:20 final size:22
Alignment explanation
Indices: 32329164--32329213 Score: 86
Period size: 20 Copynumber: 2.4 Consensus size: 22
32329154 ATATAATAAT
32329164 AATTATATCAAGAATTTTATTA
1 AATTATATCAAGAATTTTATTA
32329186 AATTATAT-AA-AATTTTATTA
1 AATTATATCAAGAATTTTATTA
32329206 AATTATAT
1 AATTATAT
32329214 TTAATAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 18 0.64
21 2 0.07
22 8 0.29
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
AATTATATCAAGAATTTTATTA
Found at i:32329214 original size:10 final size:10
Alignment explanation
Indices: 32329176--32329214 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
32329166 TTATATCAAG
*
32329176 AATTTTATTA
1 AATTATATTA
*
32329186 AATTATATAA
1 AATTATATTA
*
32329196 AATTTTATTA
1 AATTATATTA
32329206 AATTATATT
1 AATTATATT
32329215 TAATAATAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (10 bp):
AATTATATTA
Found at i:32330190 original size:20 final size:21
Alignment explanation
Indices: 32330161--32330200 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
32330151 AAACATTAAA
* *
32330161 AAATATATTTTAT-TATTTTT
1 AAATAAATTTAATATATTTTT
32330181 AAATAAATTTAATATATTTT
1 AAATAAATTTAATATATTTT
32330201 AATTTTAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
AAATAAATTTAATATATTTTT
Found at i:32330515 original size:28 final size:28
Alignment explanation
Indices: 32330480--32330545 Score: 123
Period size: 28 Copynumber: 2.4 Consensus size: 28
32330470 ATAAAAAATA
*
32330480 ACCAAAATATTATAACTTTTTTTTATTT
1 ACCAAAATATTATAAATTTTTTTTATTT
32330508 ACCAAAATATTATAAATTTTTTTTATTT
1 ACCAAAATATTATAAATTTTTTTTATTT
32330536 ACCAAAATAT
1 ACCAAAATAT
32330546 ACAAAAAAAC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (28 bp):
ACCAAAATATTATAAATTTTTTTTATTT
Found at i:32330568 original size:17 final size:17
Alignment explanation
Indices: 32330538--32330571 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
32330528 TTTTATTTAC
*
32330538 CAAAATATACAAAAAAA
1 CAAAAAATACAAAAAAA
*
32330555 CAAAAAATAGAAAAAAA
1 CAAAAAATACAAAAAAA
32330572 ACCTGACACG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.79, C:0.09, G:0.03, T:0.09
Consensus pattern (17 bp):
CAAAAAATACAAAAAAA
Found at i:32330631 original size:27 final size:27
Alignment explanation
Indices: 32330601--32330677 Score: 109
Period size: 27 Copynumber: 2.9 Consensus size: 27
32330591 GGCCAATCAC
* * *
32330601 ATTGGCAGCACTAAAGGTGCCAATGTG
1 ATTGGCGGCACCAATGGTGCCAATGTG
*
32330628 ATTGGTGGCACCAATGGTGCCAATGTG
1 ATTGGCGGCACCAATGGTGCCAATGTG
*
32330655 ATTTGCGGCACCAATGGTGCCAA
1 ATTGGCGGCACCAATGGTGCCAA
32330678 AGGACTAAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (27 bp):
ATTGGCGGCACCAATGGTGCCAATGTG
Found at i:32331278 original size:18 final size:18
Alignment explanation
Indices: 32331257--32331340 Score: 73
Period size: 18 Copynumber: 4.7 Consensus size: 18
32331247 AGTAATAACT
32331257 CTATTTTAATTTAATAAA
1 CTATTTTAATTTAATAAA
* * **
32331275 CTATTCTCATTTAA-ACT
1 CTATTTTAATTTAATAAA
*
32331292 CTATTGTAATTTAATAAA
1 CTATTTTAATTTAATAAA
*
32331310 CTATTCTT-ATTTAATAACT
1 CTATT-TTAATTTAATAA-A
*
32331329 CTATTTTCATTT
1 CTATTTTAATTT
32331341 GAAATATAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 7
0.75 0.14 0.10
Matches are distributed among these distances:
17 13 0.25
18 29 0.56
19 10 0.19
ACGTcount: A:0.35, C:0.13, G:0.01, T:0.51
Consensus pattern (18 bp):
CTATTTTAATTTAATAAA
Found at i:32331302 original size:35 final size:37
Alignment explanation
Indices: 32331249--32331333 Score: 138
Period size: 35 Copynumber: 2.4 Consensus size: 37
32331239 TCTAATTAAG
*
32331249 TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
1 TAATAACTCTATTGTAATTTAATAAACTATTCTCATT
*
32331286 T-A-AACTCTATTGTAATTTAATAAACTATTCTTATT
1 TAATAACTCTATTGTAATTTAATAAACTATTCTCATT
32331321 TAATAACTCTATT
1 TAATAACTCTATT
32331334 TTCATTTGAA
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
35 32 0.73
36 2 0.05
37 10 0.23
ACGTcount: A:0.38, C:0.13, G:0.01, T:0.48
Consensus pattern (37 bp):
TAATAACTCTATTGTAATTTAATAAACTATTCTCATT
Found at i:32331505 original size:82 final size:82
Alignment explanation
Indices: 32331411--32331575 Score: 312
Period size: 82 Copynumber: 2.0 Consensus size: 82
32331401 TTAATTAAAA
*
32331411 TAGTCTAACATGTTTATGTTATAAGTCTATTAAGAATATATTAAATTTATAAATAGATAAAATAA
1 TAGTCTAACATGTTTATGTTATAAGTCTATTAAGAATATATTAAACTTATAAATAGATAAAATAA
32331476 TTTATGTTTCCATTATT
66 TTTATGTTTCCATTATT
*
32331493 TAGTCTAACATGTTTATGTTATAAGTCTATTAAGAATATATTAAACTTATAAATAGATAAAATAG
1 TAGTCTAACATGTTTATGTTATAAGTCTATTAAGAATATATTAAACTTATAAATAGATAAAATAA
32331558 TTTATGTTTCCATTATT
66 TTTATGTTTCCATTATT
32331575 T
1 T
32331576 TTTTCCTTTT
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
82 81 1.00
ACGTcount: A:0.39, C:0.07, G:0.09, T:0.45
Consensus pattern (82 bp):
TAGTCTAACATGTTTATGTTATAAGTCTATTAAGAATATATTAAACTTATAAATAGATAAAATAA
TTTATGTTTCCATTATT
Found at i:32331678 original size:19 final size:19
Alignment explanation
Indices: 32331656--32331721 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
32331646 TTTAATTTTT
32331656 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
* * *
32331675 TTAAATGAGAATAG-TTTA
1 TTAAATTAAAATAGAGTTA
*
32331693 TTACATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
32331712 TTAAATTAAA
1 TTAAATTAAA
32331722 CTATTTTAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
18 14 0.37
19 24 0.63
ACGTcount: A:0.50, C:0.02, G:0.11, T:0.38
Consensus pattern (19 bp):
TTAAATTAAAATAGAGTTA
Found at i:32332127 original size:16 final size:16
Alignment explanation
Indices: 32332106--32332139 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
32332096 GCTGTGTCAG
32332106 GTTTTTT-TTTCTTTTT
1 GTTTTTTGTTT-TTTTT
32332122 GTTTTTTGTTTTTTTT
1 GTTTTTTGTTTTTTTT
32332138 GT
1 GT
32332140 ATATTTTGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.82
17 3 0.18
ACGTcount: A:0.00, C:0.03, G:0.12, T:0.85
Consensus pattern (16 bp):
GTTTTTTGTTTTTTTT
Found at i:32332169 original size:26 final size:27
Alignment explanation
Indices: 32332140--32332199 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 27
32332130 TTTTTTTTGT
32332140 ATATTTTGGTAAATAAAAAAA-TTATA
1 ATATTTTGGTAAATAAAAAAAGTTATA
32332166 ATATTTTGGTAAATAAAAAAAGTTATA
1 ATATTTTGGTAAATAAAAAAAGTTATA
32332193 ATATTTT
1 ATATTTT
32332200 CATTATTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 21 0.64
27 12 0.36
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (27 bp):
ATATTTTGGTAAATAAAAAAAGTTATA
Found at i:32337909 original size:3 final size:3
Alignment explanation
Indices: 32337901--32337931 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
32337891 AAAACAGGAG
32337901 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA A
1 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA A
32337932 ACTATAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
ACA
Found at i:32341560 original size:13 final size:13
Alignment explanation
Indices: 32341542--32341605 Score: 92
Period size: 13 Copynumber: 4.9 Consensus size: 13
32341532 AGTTCTTCGT
32341542 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
* *
32341555 TGCTTTTTAAAAG
1 TGCTTTTGAGAAG
*
32341568 TGTTTTTGAGAAG
1 TGCTTTTGAGAAG
*
32341581 TGCTTTTCAGAAG
1 TGCTTTTGAGAAG
32341594 TGCTTTTGAGAA
1 TGCTTTTGAGAA
32341606 ATTTGAGTGT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 43 1.00
ACGTcount: A:0.25, C:0.08, G:0.25, T:0.42
Consensus pattern (13 bp):
TGCTTTTGAGAAG
Found at i:32341877 original size:19 final size:20
Alignment explanation
Indices: 32341833--32341882 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
32341823 ATTAATTATT
*
32341833 TATAAAATTTAATTAGAATA
1 TATAAAATATAATTAGAATA
*
32341853 TATAAAATATATTTA-AATA
1 TATAAAATATAATTAGAATA
*
32341872 T-TTAAATATAA
1 TATAAAATATAA
32341883 AAATTAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
18 8 0.31
19 5 0.19
20 13 0.50
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (20 bp):
TATAAAATATAATTAGAATA
Found at i:32348551 original size:13 final size:12
Alignment explanation
Indices: 32348533--32348565 Score: 57
Period size: 12 Copynumber: 2.7 Consensus size: 12
32348523 AGACTCGTGA
32348533 AAAAAAAAATTTG
1 AAAAAAAAA-TTG
32348546 AAAAAAAAATTG
1 AAAAAAAAATTG
32348558 AAAAAAAA
1 AAAAAAAA
32348566 GAAAAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (12 bp):
AAAAAAAAATTG
Found at i:32357369 original size:12 final size:13
Alignment explanation
Indices: 32357354--32357382 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
32357344 ATTTATTTTT
32357354 ATATAAAAAA-TA
1 ATATAAAAAATTA
32357366 ATATAAAAAATTA
1 ATATAAAAAATTA
32357379 ATAT
1 ATAT
32357383 GGGTGGGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
ATATAAAAAATTA
Found at i:32367747 original size:6 final size:6
Alignment explanation
Indices: 32367738--32367799 Score: 51
Period size: 6 Copynumber: 10.7 Consensus size: 6
32367728 GAAGAAGAAA
* *
32367738 AAAATC AAAATC AAAATC AAAGTC AAAAGC AAAAAT- AGAAATC --AATC
1 AAAATC AAAATC AAAATC AAAATC AAAATC -AAAATC A-AAATC AAAATC
*
32367785 AAAGTC AAAAT- AAAA
1 AAAATC AAAATC AAAA
32367800 AAATATGAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 11
0.73 0.10 0.18
Matches are distributed among these distances:
4 4 0.09
5 5 0.11
6 32 0.71
7 4 0.09
ACGTcount: A:0.66, C:0.13, G:0.06, T:0.15
Consensus pattern (6 bp):
AAAATC
Found at i:32368222 original size:13 final size:13
Alignment explanation
Indices: 32368189--32368214 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32368179 AAAAAAGATG
32368189 ATGAAAAATGAAA
1 ATGAAAAATGAAA
32368202 ATGAAAAATGAAA
1 ATGAAAAATGAAA
32368215 GAGTAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15
Consensus pattern (13 bp):
ATGAAAAATGAAA
Found at i:32369560 original size:87 final size:87
Alignment explanation
Indices: 32369443--32370037 Score: 947
Period size: 87 Copynumber: 6.8 Consensus size: 87
32369433 AGATCAGTGA
* *
32369443 AGATCAAAAACCAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAACAGATCTTG
1 AGATCAAAAA-CAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTG
* * * *
32369508 CCTTCTTGCGTTAATAGTGAAGC
65 CCTTCCTACGTTAACAGCGAAGC
* * * * *
32369531 AGATCGAAAACAAAACATTGCCTCAATCGGTTACAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
*
32369596 CTTCCTACGTTAGCAGCGAAGC
66 CTTCCTACGTTAACAGCGAAGC
*
32369618 AGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGTTGGTTAAAGATAGCAGATCTTGC
1 AGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
*
32369683 CTTCCTATGTTAACAGCGAAGC
66 CTTCCTACGTTAACAGCGAAGC
* *
32369705 AGATCAAAAACAAAGCCTTGCTTCCATCGGTTGCAGTGGAGATGGTTAAAGATAGCAGATCTTGC
1 AGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
*
32369770 CTTCCTACATTAACAGCGAAGC
66 CTTCCTACGTTAACAGCGAAGC
32369792 AGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
32369857 CTTCCTACGTTAACAGCGAAGC
66 CTTCCTACGTTAACAGCGAAGC
* * *
32369879 AGACCAAAAACAAAGCCTTGCCTCTATCGGTTGCAGTGGAGCTGATTAAAGATAGCAGATCTTGC
1 AGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* * * *
32369944 CTTCCTGCGTTAATAGCAAAGT
66 CTTCCTACGTTAACAGCGAAGC
* *
32369966 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTACAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
32370031 CTTCCTA
66 CTTCCTA
32370038 AGCACTAGCG
Statistics
Matches: 467, Mismatches: 40, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
87 458 0.98
88 9 0.02
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.25
Consensus pattern (87 bp):
AGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
CTTCCTACGTTAACAGCGAAGC
Found at i:32370323 original size:129 final size:128
Alignment explanation
Indices: 32370155--32370438 Score: 408
Period size: 129 Copynumber: 2.2 Consensus size: 128
32370145 GAAATTACAA
** * * *
32370155 GTCTTATCTCCCTAAGCAGCAGTGGAGAAGACAGAAGAAATCAATCCTATCTT-CCTGAATTTAC
1 GTCTTATCTCCCTAAGTTGCAGTGGAGAAGACAAAAGAAACCAATCCTAT-TTCCCTGAAGTTAC
*
32370219 AGTGAAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGCAGAGTAGATCGCATCCC
65 AGTGAAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGCAGAGCAGATCGCATCCC
* *
32370283 GTCTTATCTCCCTGAAGTTGCAGTGGAGCATACAAAAGAAACCAATCCTATTTCCCTGAAGTTAC
1 GTCTTATCTCCCT-AAGTTGCAGTGGAGAAGACAAAAGAAACCAATCCTATTTCCCTGAAGTTAC
* * *
32370348 AGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCC
65 AGTGAAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGCAGAGCAGATCGCATCCC
* * *
32370412 ATCTTATCTCCTTAAAGTTGTAGTGGA
1 GTCTTATCTCCCT-AAGTTGCAGTGGA
32370439 ACAGGCTGTA
Statistics
Matches: 139, Mismatches: 15, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
128 15 0.11
129 124 0.89
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (128 bp):
GTCTTATCTCCCTAAGTTGCAGTGGAGAAGACAAAAGAAACCAATCCTATTTCCCTGAAGTTACA
GTGAAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGCAGAGCAGATCGCATCCC
Found at i:32370386 original size:44 final size:44
Alignment explanation
Indices: 32370202--32370404 Score: 155
Period size: 44 Copynumber: 4.7 Consensus size: 44
32370192 AAATCAATCC
* * * * *
32370202 TATCTTCCTGAATTTACAGTGAAGCAGATTAAAACCACAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACCACAGATCT
* ** * ** *
32370246 TATCTCTCTGAAGTTGCAGCAGAGTAGATCGCATCC-C-G-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACCACAGATCT
* ** *
32370287 TATCTCCCTGAAGTTGCAGTGGAGCATA-CAAAAGAAACCA-ATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAA-CCA-CAGATCT
* * * *
32370331 TATTTCCCTGAAGTTACAGTGGAGCGGATTAAAACCACAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACCACAGATCT
* *
32370375 TATCTCTCTGAAGTTGCAGTAGAGCAGATC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATC
32370405 GCATCCCATC
Statistics
Matches: 115, Mismatches: 37, Indels: 14
0.69 0.22 0.08
Matches are distributed among these distances:
40 2 0.02
41 26 0.23
42 1 0.01
43 4 0.03
44 78 0.68
45 4 0.03
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACCACAGATCT
Found at i:32370419 original size:41 final size:41
Alignment explanation
Indices: 32370242--32370431 Score: 121
Period size: 44 Copynumber: 4.5 Consensus size: 41
32370232 AAAACCACAG
* * * * *
32370242 ATCTTATCTCTCTGAAGTTGCAGCAGAGTAGATCGCATCCC
1 ATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCGAAACCC
* * * *
32370283 GTCTTATCTCCCTGAAGTTGCAGTGGAGCATA-CAAAAGAAACCA
1 ATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATC----GAAACCC
* * * * * **
32370327 ATCCTATTTCCCTGAAGTTACAGTGGAGCGGATTAAAACCAC
1 ATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCGAAACC-C
* * *
32370369 AGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCC
1 --ATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCGAAACCC
* *
32370412 ATCTTATCTCCTTAAAGTTG
1 ATCTTATCTCCCTGAAGTTG
32370432 TAGTGGAACA
Statistics
Matches: 110, Mismatches: 31, Indels: 16
0.70 0.20 0.10
Matches are distributed among these distances:
40 1 0.01
41 48 0.44
43 1 0.01
44 60 0.55
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (41 bp):
ATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCGAAACCC
Found at i:32381898 original size:98 final size:98
Alignment explanation
Indices: 32381788--32381970 Score: 305
Period size: 98 Copynumber: 1.9 Consensus size: 98
32381778 TCGATACTTG
*
32381788 TGAATCTTAACTTGATTTTTTGAAACATCGAAGCTAAAGATGGTATGGTACTTGACCTAGGTA-T
1 TGAATCTTAACTTGATTTTTTGAAACATCAAAGCTAAAGATGGTATGGTACTTGACCTAGGTACT
*
32381852 CGATACCTATGCTTACACTTTTTGAAATGGTATT
66 -AATACCTATGCTTACACTTTTTGAAATGGTATT
* * *
32381886 TGAATTTTAACTTGATTTTTTGAAATATCAAAGCTAAATATGGTATGGTACTTGACCTAGGTACT
1 TGAATCTTAACTTGATTTTTTGAAACATCAAAGCTAAAGATGGTATGGTACTTGACCTAGGTACT
32381951 AATACCTATGCTTACACTTT
66 AATACCTATGCTTACACTTT
32381971 GAAAAGTTTG
Statistics
Matches: 79, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
98 78 0.99
99 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (98 bp):
TGAATCTTAACTTGATTTTTTGAAACATCAAAGCTAAAGATGGTATGGTACTTGACCTAGGTACT
AATACCTATGCTTACACTTTTTGAAATGGTATT
Found at i:32384616 original size:14 final size:14
Alignment explanation
Indices: 32384599--32384631 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
32384589 TACCATTTGA
*
32384599 CATATATTTCATAG
1 CATATATGTCATAG
32384613 CATATATGTCATAG
1 CATATATGTCATAG
32384627 CATAT
1 CATAT
32384632 TCCCAACCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.39
Consensus pattern (14 bp):
CATATATGTCATAG
Found at i:32386656 original size:5 final size:5
Alignment explanation
Indices: 32386646--32386675 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
32386636 TAGATATTTT
32386646 TTATA TTATA TTATA TTATA TTATTA TTAT
1 TTATA TTATA TTATA TTATA TTA-TA TTAT
32386676 TATTGTTAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (5 bp):
TTATA
Found at i:32386744 original size:21 final size:22
Alignment explanation
Indices: 32386704--32386747 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
32386694 ATAGTAAAGT
*
32386704 AAAATAAAAAAAGGAAAGAAAC
1 AAAATAAAAAAAGAAAAGAAAC
*
32386726 AAAAT-AAAGAAGAAAAGAAAC
1 AAAATAAAAAAAGAAAAGAAAC
32386747 A
1 A
32386748 GAGAGCAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.77, C:0.05, G:0.14, T:0.05
Consensus pattern (22 bp):
AAAATAAAAAAAGAAAAGAAAC
Found at i:32388393 original size:35 final size:35
Alignment explanation
Indices: 32388354--32388424 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
32388344 AAGGTGAAAA
* *
32388354 TAAAGTGATTTGAAATAGTGAAATAGTACTTGAAT
1 TAAAGTGATTTGAAATAGTAAAATAATACTTGAAT
*
32388389 TAAAGTGATTTGAAATAGTAAAATAATATTTGAAT
1 TAAAGTGATTTGAAATAGTAAAATAATACTTGAAT
32388424 T
1 T
32388425 TTAATTGAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.45, C:0.01, G:0.17, T:0.37
Consensus pattern (35 bp):
TAAAGTGATTTGAAATAGTAAAATAATACTTGAAT
Found at i:32390641 original size:17 final size:17
Alignment explanation
Indices: 32390619--32390651 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
32390609 TCATCTTTTA
32390619 CCCTCTTTTATTTCAAG
1 CCCTCTTTTATTTCAAG
32390636 CCCTCTTTTATTTCAA
1 CCCTCTTTTATTTCAA
32390652 CAAAAGTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.30, G:0.03, T:0.48
Consensus pattern (17 bp):
CCCTCTTTTATTTCAAG
Found at i:32393318 original size:20 final size:19
Alignment explanation
Indices: 32393271--32393319 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
32393261 GATTTGAAAT
*
32393271 TAATTTTTGTTATTTGCTTA
1 TAATTTTT-TTATTTGCTAA
* *
32393291 GAAATTTTTTATTGTGCTAA
1 TAATTTTTTTATT-TGCTAA
32393311 TAATTTTTT
1 TAATTTTTT
32393320 ATAGGAATTA
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.24, C:0.04, G:0.10, T:0.61
Consensus pattern (19 bp):
TAATTTTTTTATTTGCTAA
Found at i:32393631 original size:41 final size:41
Alignment explanation
Indices: 32393586--32393676 Score: 105
Period size: 41 Copynumber: 2.2 Consensus size: 41
32393576 AAACAGGCTT
*
32393586 TTAGCGGCG-TTTGGACAAAAAACGCCACAAAAAAT-CGAGCA
1 TTAGCGGCGCTTT--ACAAAAAACGCCACAAAAAATAAGAGCA
* * * *
32393627 TTAGCGGCGCTTTACGAAAAACGCCGCCAAAGATAAGAGCA
1 TTAGCGGCGCTTTACAAAAAACGCCACAAAAAATAAGAGCA
32393668 TTAGCGGCG
1 TTAGCGGCG
32393677 ATATATGTAA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
40 17 0.40
41 23 0.53
42 3 0.07
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.15
Consensus pattern (41 bp):
TTAGCGGCGCTTTACAAAAAACGCCACAAAAAATAAGAGCA
Found at i:32393863 original size:41 final size:41
Alignment explanation
Indices: 32393790--32394056 Score: 274
Period size: 41 Copynumber: 6.5 Consensus size: 41
32393780 TTAGCGGTGC
* ** * *
32393790 TTTTACATAATCGCCGCTAATGCTGTGGTCTTTCGCGACGTT
1 TTTTA-ATAAGCGCCGCTAATGCTCAGGTCTTTAGCGGCGTT
* * * *
32393832 TTCTAATATGCGCCTCTAATGCTCAGGTCTTTACCGGCGTT
1 TTTTAATAAGCGCCGCTAATGCTCAGGTCTTTAGCGGCGTT
*
32393873 TTTTAAAAAAGCGCCGCTAATGCTACA-GTCTTTAGCGGCGTT
1 TTTT-AATAAGCGCCGCTAATGCT-CAGGTCTTTAGCGGCGTT
* *
32393915 TTTTACA-AAGCGCCGCTAATGCT-ACGGTCTTTGGCGGTGTT
1 TTTTA-ATAAGCGCCGCTAATGCTCA-GGTCTTTAGCGGCGTT
* * *
32393956 TTTTACTAACCGCCGCTAATGCTACA-GTCTGTAGCGGCGTT
1 TTTTAATAAGCGCCGCTAATGCT-CAGGTCTTTAGCGGCGTT
* *
32393997 TTTTACTAAGCACCGCTAATGCTCAGGTCTTTAGCGGCGTT
1 TTTTAATAAGCGCCGCTAATGCTCAGGTCTTTAGCGGCGTT
*
32394038 TCTTCAA-AAGCGCCGCTAA
1 T-TTTAATAAGCGCCGCTAA
32394057 AGACCTGAGC
Statistics
Matches: 188, Mismatches: 27, Indels: 21
0.80 0.11 0.09
Matches are distributed among these distances:
39 1 0.01
40 2 0.01
41 140 0.74
42 42 0.22
43 3 0.02
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.33
Consensus pattern (41 bp):
TTTTAATAAGCGCCGCTAATGCTCAGGTCTTTAGCGGCGTT
Found at i:32394072 original size:41 final size:41
Alignment explanation
Indices: 32394027--32394120 Score: 109
Period size: 41 Copynumber: 2.3 Consensus size: 41
32394017 GCTCAGGTCT
* * *
32394027 TTAGCGGCGTTTCTTCA-AAAGCGCCGCTAAAGACCTGAGCA
1 TTAGCGGCGTTTATT-AGAAAACGCCGCTAAAGACCGGAGCA
** *
32394068 TTAGCGGCGCATATTAGAAAACGCCGCTAAAGACCGGAGTA
1 TTAGCGGCGTTTATTAGAAAACGCCGCTAAAGACCGGAGCA
*
32394109 TTAGCGGTGTTT
1 TTAGCGGCGTTT
32394121 TGTAGCTAGC
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
40 1 0.02
41 42 0.98
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (41 bp):
TTAGCGGCGTTTATTAGAAAACGCCGCTAAAGACCGGAGCA
Found at i:32395116 original size:17 final size:16
Alignment explanation
Indices: 32395089--32395120 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
32395079 TTACTTCTTA
32395089 TTATAATATATATATG
1 TTATAATATATATATG
32395105 TTATATATATATATAT
1 TTATA-ATATATATAT
32395121 ATATTATGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
TTATAATATATATATG
Found at i:32395116 original size:19 final size:18
Alignment explanation
Indices: 32395090--32395127 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
32395080 TACTTCTTAT
*
32395090 TATAATATATATATGTTA
1 TATAATATATATATATTA
32395108 TATATATATATATATATTA
1 TATA-ATATATATATATTA
32395127 T
1 T
32395128 GAAACATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (18 bp):
TATAATATATATATATTA
Found at i:32395329 original size:73 final size:74
Alignment explanation
Indices: 32395208--32395363 Score: 260
Period size: 73 Copynumber: 2.1 Consensus size: 74
32395198 GCACCAATTT
* *
32395208 GCGGCGTTTATTGTAAAAACGCCGCAAAAGTTTAACCAAAATGACTTCGTTTT-TATACTGTTTA
1 GCGGCGTTTATGGTAAAAACGCCGCAAAAGTTTAACCAAAACGACTTCGTTTTGTATACTGTTTA
32395272 TTGGTATTA
66 TTGGTATTA
* *
32395281 GCGGCGTTTCTGGTAAAAACGCCGCAAAAGTTTAACCAAAACGTCTTCGTTTTGTATACTGTTTA
1 GCGGCGTTTATGGTAAAAACGCCGCAAAAGTTTAACCAAAACGACTTCGTTTTGTATACTGTTTA
32395346 TTGGTATTA
66 TTGGTATTA
*
32395355 GTGGCGTTT
1 GCGGCGTTT
32395364 TGTATAATTT
Statistics
Matches: 77, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
73 49 0.64
74 28 0.36
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.37
Consensus pattern (74 bp):
GCGGCGTTTATGGTAAAAACGCCGCAAAAGTTTAACCAAAACGACTTCGTTTTGTATACTGTTTA
TTGGTATTA
Found at i:32397362 original size:15 final size:15
Alignment explanation
Indices: 32397342--32397377 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
32397332 ACCACCAATT
*
32397342 TGTTTTCATTTGTAC
1 TGTTTTCATTTCTAC
32397357 TGTTTTCATTTCTAC
1 TGTTTTCATTTCTAC
32397372 T-TTTTC
1 TGTTTTC
32397378 CTTTTATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 5 0.25
15 15 0.75
ACGTcount: A:0.11, C:0.17, G:0.08, T:0.64
Consensus pattern (15 bp):
TGTTTTCATTTCTAC
Found at i:32398043 original size:43 final size:43
Alignment explanation
Indices: 32397979--32398174 Score: 197
Period size: 43 Copynumber: 4.5 Consensus size: 43
32397969 TTACCCATTT
*
32397979 ATAATACAT-ACATTACATAACTTATTAATATATATATTTTAAA
1 ATAATACATAAC-TTACATAACTTATTAATACATATATTTTAAA
* *
32398022 ATGATACATAACTTACATAACTTATTAATACATAACATTTTTAATA
1 ATAATACATAACTTACATAACTTATTAATACAT-ATA-TTTTAA-A
* *
32398068 CATAACTTATATAA--TACGACGTAACTTATTAATATATATATTTTAAA
1 -ATAA--TACATAACTTAC-A--TAACTTATTAATACATATATTTTAAA
* *
32398115 ATAATACATAACTTACATAACTTATTAATACATA-A-CTT-AT
1 ATAATACATAACTTACATAACTTATTAATACATATATTTTAAA
32398155 ATAATACATAACTTACATAA
1 ATAATACATAACTTACATAA
32398175 TACGACATAA
Statistics
Matches: 130, Mismatches: 11, Indels: 27
0.77 0.07 0.16
Matches are distributed among these distances:
40 21 0.16
41 2 0.02
42 1 0.01
43 44 0.34
44 10 0.08
45 7 0.05
46 8 0.06
47 7 0.05
48 7 0.05
49 8 0.06
50 15 0.12
ACGTcount: A:0.47, C:0.12, G:0.02, T:0.39
Consensus pattern (43 bp):
ATAATACATAACTTACATAACTTATTAATACATATATTTTAAA
Found at i:32398067 original size:16 final size:15
Alignment explanation
Indices: 32398035--32398169 Score: 111
Period size: 16 Copynumber: 8.7 Consensus size: 15
32398025 ATACATAACT
32398035 TACATAACTTATTAA
1 TACATAACTTATTAA
*
32398050 TACATAACATTTTTAA
1 TACATAAC-TTATTAA
32398066 TACATAACTTATATAA
1 TACATAACTTAT-TAA
32398082 TACGACGTAACTTATTAA
1 TAC-A--TAACTTATTAA
*
32398100 TATATATA-TT-TTAA
1 TACATA-ACTTATTAA
*
32398114 -A-ATAA--TACATAA
1 TACATAACTTA-TTAA
32398126 CTTACATAACTTATTAA
1 --TACATAACTTATTAA
32398143 TACATAACTTATATAA
1 TACATAACTTAT-TAA
32398159 TACATAACTTA
1 TACATAACTTA
32398170 CATAATACGA
Statistics
Matches: 100, Mismatches: 5, Indels: 29
0.75 0.04 0.22
Matches are distributed among these distances:
10 1 0.01
11 1 0.01
12 6 0.06
13 1 0.01
14 4 0.04
15 28 0.28
16 39 0.39
17 5 0.05
18 7 0.07
19 8 0.08
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.39
Consensus pattern (15 bp):
TACATAACTTATTAA
Found at i:32398093 original size:93 final size:93
Alignment explanation
Indices: 32397996--32398180 Score: 327
Period size: 93 Copynumber: 2.0 Consensus size: 93
32397986 ATACATTACA
*
32397996 TAACTTATTAATATATATATTTTAAAATGATACATAACTTACATAACTTATTAATACATAACATT
1 TAACTTATTAATATATATATTTTAAAATAATACATAACTTACATAACTTATTAATACATAAC-TT
* *
32398061 -TTTAATACATAACTTATATAATACGACG
65 ATATAATACATAACTTACATAATACGACG
32398089 TAACTTATTAATATATATATTTTAAAATAATACATAACTTACATAACTTATTAATACATAACTTA
1 TAACTTATTAATATATATATTTTAAAATAATACATAACTTACATAACTTATTAATACATAACTTA
32398154 TATAATACATAACTTACATAATACGAC
66 TATAATACATAACTTACATAATACGAC
32398181 ATAATAACAT
Statistics
Matches: 88, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
92 2 0.02
93 86 0.98
ACGTcount: A:0.46, C:0.12, G:0.02, T:0.39
Consensus pattern (93 bp):
TAACTTATTAATATATATATTTTAAAATAATACATAACTTACATAACTTATTAATACATAACTTA
TATAATACATAACTTACATAATACGACG
Found at i:32398133 original size:9 final size:9
Alignment explanation
Indices: 32398119--32398174 Score: 59
Period size: 9 Copynumber: 6.8 Consensus size: 9
32398109 TTTAAAATAA
32398119 TACATAACT
1 TACATAACT
32398128 TACATAACT
1 TACATAACT
*
32398137 TA-TTAA--
1 TACATAACT
32398143 TACATAACT
1 TACATAACT
*
32398152 TATATAA--
1 TACATAACT
32398159 TACATAACT
1 TACATAACT
32398168 TACATAA
1 TACATAA
32398175 TACGACATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
6 2 0.05
7 9 0.24
8 3 0.08
9 24 0.63
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (9 bp):
TACATAACT
Found at i:32398163 original size:31 final size:31
Alignment explanation
Indices: 32398035--32398169 Score: 115
Period size: 31 Copynumber: 4.4 Consensus size: 31
32398025 ATACATAACT
*
32398035 TACATAACTTATTAATACATAACATT-TTTAA
1 TACATAACTTATTAATACATAAC-TTATATAA
32398066 TACATAACTTATATAATACGACGTAACTTAT-TAA
1 TACATAACTTAT-TAATAC-A--TAACTTATATAA
* *
32398100 TATATATA-TT-TTAA-A-ATAA--TACATAA
1 TACATA-ACTTATTAATACATAACTTATATAA
32398126 CTTACATAACTTATTAATACATAACTTATATAA
1 --TACATAACTTATTAATACATAACTTATATAA
32398159 TACATAACTTA
1 TACATAACTTA
32398170 CATAATACGA
Statistics
Matches: 85, Mismatches: 4, Indels: 30
0.71 0.03 0.25
Matches are distributed among these distances:
25 2 0.02
26 3 0.04
27 4 0.05
28 7 0.08
29 5 0.06
30 1 0.01
31 28 0.33
32 9 0.11
33 8 0.09
34 12 0.14
35 6 0.07
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.39
Consensus pattern (31 bp):
TACATAACTTATTAATACATAACTTATATAA
Found at i:32398197 original size:40 final size:40
Alignment explanation
Indices: 32398111--32398197 Score: 92
Period size: 40 Copynumber: 2.2 Consensus size: 40
32398101 ATATATATTT
**
32398111 TAAA-ATAATACATAACTTACATAACTTATTAATACATAAC
1 TAAATATAATACATAACTTACATAAC-TACGAATACATAAC
*
32398151 T-TATATAATACATAACTTACATAA-TACGACATA-ATAAC
1 TAAATATAATACATAACTTACATAACTACGA-ATACATAAC
32398189 ATAAATATA
1 -TAAATATA
32398198 TATCATATGA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
38 8 0.21
39 5 0.13
40 26 0.67
ACGTcount: A:0.53, C:0.14, G:0.01, T:0.32
Consensus pattern (40 bp):
TAAATATAATACATAACTTACATAACTACGAATACATAAC
Found at i:32402130 original size:17 final size:18
Alignment explanation
Indices: 32402093--32402130 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
32402083 GATTGAGAGT
* *
32402093 GAAAAGGAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
32402111 GAAAAGAAAT-TGAAAAA
1 GAAAAGAAATGTGAAAAA
32402128 GAA
1 GAA
32402131 GTTGAAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.63, C:0.03, G:0.24, T:0.11
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Found at i:32402143 original size:13 final size:12
Alignment explanation
Indices: 32402112--32402166 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
32402102 TGTGAAACAG
*
32402112 AAAAGAAATTGA
1 AAAAGAAGTTGA
32402124 AAAAGAAGTTGA
1 AAAAGAAGTTGA
*
32402136 AGAAAGAAG-AGA
1 A-AAAGAAGTTGA
*
32402148 AAATG-AGTTAGA
1 AAAAGAAGTT-GA
32402160 AAAAGAA
1 AAAAGAA
32402167 ACAAAAGAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 2 0.06
11 3 0.09
12 21 0.62
13 8 0.24
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.13
Consensus pattern (12 bp):
AAAAGAAGTTGA
Found at i:32403532 original size:4 final size:4
Alignment explanation
Indices: 32403523--32403554 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
32403513 AAGTTTTATT
32403523 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
32403555 CTTAGTTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:32408562 original size:66 final size:66
Alignment explanation
Indices: 32408479--32408625 Score: 208
Period size: 66 Copynumber: 2.2 Consensus size: 66
32408469 GAGGCAACAT
* *
32408479 CGAGAGAAGCTGAGGTTCAA-AAAAGATATGAAAAACTCCAGCTA-CAACTTAAATCAGATGCGG
1 CGAGAGAAGCTGAGGTTCAACAAAAG-TATGAAAAACTCCAGC-AGCAACTTAAAGCAAATGCGG
32408542 CAG
64 CAG
* * *
32408545 CGAGAGAAGCTGAGGTTCAACGAAAGTATGAAGAACTCCAGCAGCAGCTTAAAGCAAATGCGGCA
1 CGAGAGAAGCTGAGGTTCAACAAAAGTATGAAAAACTCCAGCAGCAACTTAAAGCAAATGCGGCA
32408610 G
66 G
*
32408611 CGAGAGAAGCAGAGG
1 CGAGAGAAGCTGAGG
32408626 CTACAGCGAG
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
65 1 0.01
66 68 0.93
67 4 0.05
ACGTcount: A:0.40, C:0.18, G:0.28, T:0.14
Consensus pattern (66 bp):
CGAGAGAAGCTGAGGTTCAACAAAAGTATGAAAAACTCCAGCAGCAACTTAAAGCAAATGCGGCA
G
Found at i:32408632 original size:21 final size:21
Alignment explanation
Indices: 32408608--32408665 Score: 89
Period size: 21 Copynumber: 2.8 Consensus size: 21
32408598 GCAAATGCGG
*
32408608 CAGCGAGAGAAGCAGAGGCTA
1 CAGCGAGGGAAGCAGAGGCTA
* *
32408629 CAGCGAGGGAAGTAGAGGCTG
1 CAGCGAGGGAAGCAGAGGCTA
32408650 CAGCGAGGGAAGCAGA
1 CAGCGAGGGAAGCAGA
32408666 ACAGCTTAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.34, C:0.17, G:0.43, T:0.05
Consensus pattern (21 bp):
CAGCGAGGGAAGCAGAGGCTA
Found at i:32409115 original size:43 final size:43
Alignment explanation
Indices: 32409067--32409446 Score: 616
Period size: 43 Copynumber: 8.8 Consensus size: 43
32409057 TTTTTCACGA
* ** * * * * *
32409067 TAAGCGCTGCTAAAGGTCATTGTCTTTCGCGGTGTTTATTGGG
1 TAAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTTGTTGGG
*
32409110 TAAGCGCCGCTAAAGACGATGGTCTATAGCGGCGTTTGTTGGG
1 TAAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTTGTTGGG
* *
32409153 TAAGCGCCGCTAAAGACCATGGTCTATAACGGCGTTTGTTGGA
1 TAAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTTGTTGGG
*
32409196 TAAGCGCCGCTATAGACCATGGTCTATAGCGGCGTTTGTTGGG
1 TAAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTTGTTGGG
* *
32409239 TAAGCGCCGCGAAAGACCATGGTCTATAGCGGCATTTGTTGGG
1 TAAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTTGTTGGG
32409282 TAAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTTGTTGGG
1 TAAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTTGTTGGG
*
32409325 TAAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTTGATGGG
1 TAAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTTGTTGGG
*
32409368 TAAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTTGATGGG
1 TAAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTTGTTGGG
32409411 TAAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTT
1 TAAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTT
32409447 GTAAAGAAAA
Statistics
Matches: 316, Mismatches: 21, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 316 1.00
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.26
Consensus pattern (43 bp):
TAAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTTGTTGGG
Found at i:32415535 original size:29 final size:29
Alignment explanation
Indices: 32415480--32415536 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
32415470 TAATTTGTAC
**
32415480 AGGATGGATTCTGAGAAATTATTTTTGAG
1 AGGATGGATTCTGAGAAATTAGGTTTGAG
*
32415509 AGGATGGGTTCTGAAGAAA-TAGGTTTGA
1 AGGATGGATTCTG-AGAAATTAGGTTTGA
32415537 TGAGATAGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.32, C:0.04, G:0.32, T:0.33
Consensus pattern (29 bp):
AGGATGGATTCTGAGAAATTAGGTTTGAG
Found at i:32419371 original size:41 final size:41
Alignment explanation
Indices: 32419313--32419395 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
32419303 ATTAAAATGC
32419313 CATAGTCTAGCTATGGTCTTACATTTAAACATTGCCATGGT
1 CATAGTCTAGCTATGGTCTTACATTTAAACATTGCCATGGT
*
32419354 CATAGTCTAGCTGTGGTCTTACATTTAAACATTGCCATGGT
1 CATAGTCTAGCTATGGTCTTACATTTAAACATTGCCATGGT
32419395 C
1 C
32419396 TAACCATGGT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.36
Consensus pattern (41 bp):
CATAGTCTAGCTATGGTCTTACATTTAAACATTGCCATGGT
Found at i:32419397 original size:35 final size:35
Alignment explanation
Indices: 32419310--32419409 Score: 119
Period size: 41 Copynumber: 2.7 Consensus size: 35
32419300 TTCATTAAAA
*
32419310 TGCCATAGTCTAGCTATGGTCTTACATTTAAACAT
1 TGCCATGGTCTAGCTATGGTCTTACATTTAAACAT
32419345 TGCCATGGTCATAGTCTAGCTGTGGTCTTACATTTAAACAT
1 TGCCATGGTC-TAG-CTA----TGGTCTTACATTTAAACAT
* *
32419386 TGCCATGGTCTAACCATGGTCTTA
1 TGCCATGGTCTAGCTATGGTCTTA
32419410 TCCTTCAATT
Statistics
Matches: 56, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
35 17 0.30
36 3 0.05
37 3 0.05
39 2 0.04
40 2 0.04
41 29 0.52
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (35 bp):
TGCCATGGTCTAGCTATGGTCTTACATTTAAACAT
Found at i:32427011 original size:33 final size:34
Alignment explanation
Indices: 32426947--32427038 Score: 80
Period size: 33 Copynumber: 2.7 Consensus size: 34
32426937 ATGTTCAAGG
* * * *
32426947 TGCCATAACCTAGTTATGGTCTTTTCATTAAA-A-
1 TGCCATAGCCCAGCTATGGTC-TTACATTAAACAT
32426980 TGCCATAGCCCAGCTATGGTCTTACATTTAAACAT
1 TGCCATAGCCCAGCTATGGTCTTACA-TTAAACAT
* * * *
32427015 TGCCATGGTCCAACCATGGTCTTA
1 TGCCATAGCCCAGCTATGGTCTTA
32427039 TCCATCAATT
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
32 4 0.08
33 23 0.48
34 1 0.02
35 20 0.42
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (34 bp):
TGCCATAGCCCAGCTATGGTCTTACATTAAACAT
Found at i:32428272 original size:29 final size:28
Alignment explanation
Indices: 32428224--32428281 Score: 64
Period size: 29 Copynumber: 2.0 Consensus size: 28
32428214 CCTAATAAAT
*
32428224 TCTTTTAAAACACAAATTAATTCAAAAA
1 TCTTTTAAAACACAAATTAACTCAAAAA
* *
32428252 TCTTTCTAAAATCAC-ACTTAACTCATAAA
1 TCTTT-TAAAA-CACAAATTAACTCAAAAA
32428281 T
1 T
32428282 AATAATTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
28 5 0.20
29 17 0.68
30 3 0.12
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (28 bp):
TCTTTTAAAACACAAATTAACTCAAAAA
Found at i:32431616 original size:10 final size:8
Alignment explanation
Indices: 32431573--32431613 Score: 55
Period size: 8 Copynumber: 4.9 Consensus size: 8
32431563 TAAAATAAAA
*
32431573 AAAAATTT
1 AAAATTTT
32431581 AAAATTTT
1 AAAATTTT
32431589 AAAATTTT
1 AAAATTTT
32431597 AAAAATTATT
1 -AAAATT-TT
32431607 AAAATTT
1 AAAATTT
32431614 ATTCTTACAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
8 16 0.53
9 12 0.40
10 2 0.07
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (8 bp):
AAAATTTT
Found at i:32433817 original size:41 final size:43
Alignment explanation
Indices: 32433730--32433835 Score: 119
Period size: 41 Copynumber: 2.5 Consensus size: 43
32433720 CTAAATACCA
* * * *
32433730 GCCGCTAAAGACCACGACCTTTAGCGGCGCTTTTCCCAAAAAC
1 GCCGCTAAAGAACACAACCTTTAGCGGCGCTTCTACCAAAAAC
* *
32433773 GCCGCTAAAGAACA-AACCTTTAGC-GTGCTTCTAGCAAAAAC
1 GCCGCTAAAGAACACAACCTTTAGCGGCGCTTCTACCAAAAAC
* *
32433814 GCCGCTAAA-AACATAATCTTTA
1 GCCGCTAAAGAACACAACCTTTA
32433836 AAAAAAATTA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
40 4 0.07
41 29 0.53
42 9 0.16
43 13 0.24
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.21
Consensus pattern (43 bp):
GCCGCTAAAGAACACAACCTTTAGCGGCGCTTCTACCAAAAAC
Found at i:32437831 original size:21 final size:23
Alignment explanation
Indices: 32437788--32437840 Score: 69
Period size: 20 Copynumber: 2.5 Consensus size: 23
32437778 AGCTAAGTGA
*
32437788 TTTTATAAAATATTTATTATTTT
1 TTTTATAAAATATTAATTATTTT
32437811 TTTTAT-AAAT-TTAATT-TTTT
1 TTTTATAAAATATTAATTATTTT
32437831 TTTTA-AAAAT
1 TTTTATAAAAT
32437841 CAAGTACTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 13 0.46
21 5 0.18
22 4 0.14
23 6 0.21
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (23 bp):
TTTTATAAAATATTAATTATTTT
Found at i:32438402 original size:14 final size:15
Alignment explanation
Indices: 32438378--32438410 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
32438368 ATAAACCCAT
32438378 AACCCCTAACCCCTA
1 AACCCCTAACCCCTA
*
32438393 AACCCC-AACCCTTA
1 AACCCCTAACCCCTA
32438407 AACC
1 AACC
32438411 ATATGATCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.36, C:0.52, G:0.00, T:0.12
Consensus pattern (15 bp):
AACCCCTAACCCCTA
Found at i:32438952 original size:15 final size:15
Alignment explanation
Indices: 32438911--32438959 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
32438901 CCCCAACCCT
*
32438911 TAAACCACATAATCCA
1 TAAA-CACATAATCCC
*
32438927 TAATC-CATAATCCC
1 TAAACACATAATCCC
32438941 TAAACACATAATCCC
1 TAAACACATAATCCC
32438956 TAAA
1 TAAA
32438960 TTACCTTAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
14 12 0.41
15 14 0.48
16 3 0.10
ACGTcount: A:0.47, C:0.31, G:0.00, T:0.22
Consensus pattern (15 bp):
TAAACACATAATCCC
Found at i:32439363 original size:40 final size:40
Alignment explanation
Indices: 32439296--32439405 Score: 186
Period size: 40 Copynumber: 2.8 Consensus size: 40
32439286 AATATTTTTT
32439296 GCGGCGTTTTTCAACAAA-CGCCGCTAATGCTTGATCTATA
1 GCGGCGTTTTTCAA-AAAGCGCCGCTAATGCTTGATCTATA
*
32439336 GCGGCGTTTTTCAAAAAGCGCCACTAATGCTTGATCTATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTTGATCTATA
*
32439376 GCGGCGTTTTTCAAGAAGCGCCGCTAATGC
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGC
32439406 CACCAAAGCT
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
39 3 0.05
40 63 0.95
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (40 bp):
GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTTGATCTATA
Found at i:32439530 original size:93 final size:93
Alignment explanation
Indices: 32439425--32439603 Score: 261
Period size: 93 Copynumber: 1.9 Consensus size: 93
32439415 TCATGGCCTT
* * * *
32439425 GTGCTTA-ATTTTTTTGTGGCGTTTTTCAAAAAGTGCCGCTAATGCTCGATCTATAGCGGCGTTT
1 GTGCTTATATTTTTTTGCGGCGTTTTT-AAAAAGCGCCACTAATGCTCGACCTATAGCGGCGTTT
*
32439489 TTCAAGAAGCGCCGCTAATGCCACCAAAG
65 TTCAAAAAGCGCCGCTAATGCCACCAAAG
* *
32439518 GTGCTTATTTTTTTTTGCGGCGTTTTTTAAAAGCGCCACTAATGCTCGACCTATAGCGGCGTTTT
1 GTGCTTATATTTTTTTGCGGCGTTTTTAAAAAGCGCCACTAATGCTCGACCTATAGCGGCGTTTT
* *
32439583 TCAAAAAGTGCCGCTAGTGCC
66 TCAAAAAGCGCCGCTAATGCC
32439604 GATCTATAGC
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
93 59 0.78
94 17 0.22
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.34
Consensus pattern (93 bp):
GTGCTTATATTTTTTTGCGGCGTTTTTAAAAAGCGCCACTAATGCTCGACCTATAGCGGCGTTTT
TCAAAAAGCGCCGCTAATGCCACCAAAG
Found at i:32439611 original size:39 final size:39
Alignment explanation
Indices: 32439534--32439642 Score: 148
Period size: 39 Copynumber: 2.8 Consensus size: 39
32439524 ATTTTTTTTT
* * *
32439534 GCGGCGTTTTT-TAAAAGCGCCACTAATGCTCGACCTATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAGTGC-CGACCTATA
* *
32439573 GCGGCGTTTTTCAAAAAGTGCCGCTAGTGCCGATCTATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAGTGCCGACCTATA
*
32439612 GCGGCGTTTTTCAAGAAGCGCCGCTAGTGCC
1 GCGGCGTTTTTCAAAAAGCGCCGCTAGTGCC
32439643 ACCAAAGGTG
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
39 48 0.77
40 14 0.23
ACGTcount: A:0.22, C:0.26, G:0.26, T:0.27
Consensus pattern (39 bp):
GCGGCGTTTTTCAAAAAGCGCCGCTAGTGCCGACCTATA
Found at i:32439727 original size:40 final size:40
Alignment explanation
Indices: 32439672--32439759 Score: 149
Period size: 40 Copynumber: 2.2 Consensus size: 40
32439662 TTTTTGCGGT
*
32439672 GCGTTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGCG
1 GCGTTTTTCAAAAAGCCCCGCTAATGCTCGACCTATAGCG
* *
32439712 GCGTTTTTCAGAAAGCCCCGCTAATGGTCGACCTATAGCG
1 GCGTTTTTCAAAAAGCCCCGCTAATGCTCGACCTATAGCG
32439752 GCGTTTTT
1 GCGTTTTT
32439760 TATCCAAACG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCGTTTTTCAAAAAGCCCCGCTAATGCTCGACCTATAGCG
Found at i:32439774 original size:41 final size:40
Alignment explanation
Indices: 32439672--32439776 Score: 140
Period size: 40 Copynumber: 2.6 Consensus size: 40
32439662 TTTTTGCGGT
*
32439672 GCGTTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGCG
1 GCGTTTTTCACAAAGCGCCGCTAATGCTCGACCTATAGCG
* * *
32439712 GCGTTTTTCAGAAAGCCCCGCTAATGGTCGACCTATAGCG
1 GCGTTTTTCACAAAGCGCCGCTAATGCTCGACCTATAGCG
*
32439752 GCGTTTTTTATCCAAA-CGCCGCTAA
1 GCGTTTTTCA--CAAAGCGCCGCTAA
32439777 AAGTGCCGCT
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
40 46 0.81
41 8 0.14
42 3 0.05
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.27
Consensus pattern (40 bp):
GCGTTTTTCACAAAGCGCCGCTAATGCTCGACCTATAGCG
Found at i:32440871 original size:18 final size:20
Alignment explanation
Indices: 32440846--32440889 Score: 67
Period size: 18 Copynumber: 2.4 Consensus size: 20
32440836 TAAAAAAGTC
32440846 ATTA-AATTTATAAAAA-A-
1 ATTAGAATTTATAAAAATAT
32440863 ATTAGAATTTATAAAAATAT
1 ATTAGAATTTATAAAAATAT
32440883 ATTAGAA
1 ATTAGAA
32440890 ATTAATTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.17
18 12 0.50
19 1 0.04
20 7 0.29
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (20 bp):
ATTAGAATTTATAAAAATAT
Found at i:32441109 original size:19 final size:20
Alignment explanation
Indices: 32441068--32441110 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
32441058 GGAAATAAAA
* *
32441068 TTTTATAAAAGATAATTTAT
1 TTTTATAAAAAATAATCTAT
32441088 TTTTATAAAAAATAATCT-T
1 TTTTATAAAAAATAATCTAT
32441107 TTTT
1 TTTT
32441111 TCACTTTGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (20 bp):
TTTTATAAAAAATAATCTAT
Found at i:32442998 original size:7 final size:7
Alignment explanation
Indices: 32442986--32443016 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
32442976 ATGCAAAAGC
32442986 AATATAA
1 AATATAA
32442993 AATATAA
1 AATATAA
32443000 AATATAA
1 AATATAA
32443007 AATATAA
1 AATATAA
32443014 AAT
1 AAT
32443017 TATAGATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
AATATAA
Found at i:32446224 original size:7 final size:7
Alignment explanation
Indices: 32446131--32446224 Score: 84
Period size: 7 Copynumber: 13.6 Consensus size: 7
32446121 ATAATTTAAT
*
32446131 GTTTAGA
1 GTTTAGG
*
32446138 GTTTAGT
1 GTTTAGG
*
32446145 GTTTACG
1 GTTTAGG
32446152 GTTTA-G
1 GTTTAGG
32446158 GTTGTA-G
1 GTT-TAGG
*
32446165 GTTTATG
1 GTTTAGG
*
32446172 GTTTAGT
1 GTTTAGG
32446179 GTTTAGG
1 GTTTAGG
32446186 GTTTAGG
1 GTTTAGG
32446193 GTTTAGG
1 GTTTAGG
* **
32446200 ATTTATA
1 GTTTAGG
*
32446207 GTTTAGT
1 GTTTAGG
32446214 GTTTAGG
1 GTTTAGG
32446221 GTTT
1 GTTT
32446225 TAAACAAAAC
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
6 6 0.08
7 66 0.92
ACGTcount: A:0.17, C:0.01, G:0.32, T:0.50
Consensus pattern (7 bp):
GTTTAGG
Found at i:32453463 original size:26 final size:26
Alignment explanation
Indices: 32453434--32453485 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32453424 ACAACTCTTA
32453434 TGAGTGTCCTGA-TATATGGCTCTCTG
1 TGAGTGTCCTGATTA-ATGGCTCTCTG
*
32453460 TGAGTTTCCTGATTAATGGCTCTCTG
1 TGAGTGTCCTGATTAATGGCTCTCTG
32453486 GAGCCTCTCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.15, C:0.19, G:0.25, T:0.40
Consensus pattern (26 bp):
TGAGTGTCCTGATTAATGGCTCTCTG
Found at i:32453528 original size:25 final size:25
Alignment explanation
Indices: 32453496--32453554 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
32453486 GAGCCTCTCG
*
32453496 ATATGGCTCGCCTAAACTTCCCAAT
1 ATATGGCTCGCCGAAACTTCCCAAT
** *
32453521 ATATGGCTATCCGAAGCTTCCCAAT
1 ATATGGCTCGCCGAAACTTCCCAAT
32453546 -TAATGGCTC
1 AT-ATGGCTC
32453555 TTCGAAGCTA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
24 1 0.04
25 27 0.96
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (25 bp):
ATATGGCTCGCCGAAACTTCCCAAT
Found at i:32453560 original size:25 final size:25
Alignment explanation
Indices: 32453512--32453563 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
32453502 CTCGCCTAAA
32453512 CTTCCCAATATATGGCTATCCGAAG
1 CTTCCCAATATATGGCTATCCGAAG
* *
32453537 CTTCCCAAT-TAATGGCTCTTCGAAG
1 CTTCCCAATAT-ATGGCTATCCGAAG
32453562 CT
1 CT
32453564 AACCGTCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 1 0.04
25 23 0.96
ACGTcount: A:0.25, C:0.29, G:0.15, T:0.31
Consensus pattern (25 bp):
CTTCCCAATATATGGCTATCCGAAG
Found at i:32454887 original size:23 final size:23
Alignment explanation
Indices: 32454861--32454913 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
32454851 ATAAGTGCCA
32454861 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
32454884 CACTGAGATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
32454907 CACTGAT
1 CACTGAT
32454914 CAATAACACT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.30, C:0.26, G:0.23, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:32455013 original size:8 final size:8
Alignment explanation
Indices: 32455000--32455028 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
32454990 ACCCGGGACT
32455000 CACTGTAA
1 CACTGTAA
32455008 CACTGTAA
1 CACTGTAA
32455016 CACTGTAA
1 CACTGTAA
32455024 CACTG
1 CACTG
32455029 ATCTCTAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (8 bp):
CACTGTAA
Found at i:32461416 original size:67 final size:67
Alignment explanation
Indices: 32461157--32461415 Score: 369
Period size: 67 Copynumber: 3.9 Consensus size: 67
32461147 TGTTTTTTGT
* * * *
32461157 CATAGCCTAGCTATGGTCTTACACATTATACCCTATGTTTGTTGTCTTGACAGATTTCCTTTGTT
1 CATAGCCTAGCTATGGTCTTACACAATATACCCCATGTTTATTGTCTTGACAGACTTCCTTTGTT
32461222 GC
66 GC
*
32461224 CATAGCCTAGCTATGGTCTTACACAATATACCCCATGTTTATTGTCGTGACAGACTTCCTTTGTT
1 CATAGCCTAGCTATGGTCTTACACAATATACCCCATGTTTATTGTCTTGACAGACTTCCTTTGTT
32461289 GC
66 GC
* * * * *
32461291 CATAGCCTAGCTATGGTCTTACACAATATACCCCATGTTTACTATCCT-AAAGGACTTCTTTTGT
1 CATAGCCTAGCTATGGTCTTACACAATATACCCCATGTTTATTGTCTTGACA-GACTTCCTTTGT
32461355 TGC
65 TGC
* * *
32461358 AATAGCCTAGCTATGGTCTTACAC-ATCATACTCCATGTTTATTGTCTTGGCAGACTTC
1 CATAGCCTAGCTATGGTCTTACACAAT-ATACCCCATGTTTATTGTCTTGACAGACTTC
32461416 TGATTTCATG
Statistics
Matches: 172, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
66 4 0.02
67 167 0.97
68 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.37
Consensus pattern (67 bp):
CATAGCCTAGCTATGGTCTTACACAATATACCCCATGTTTATTGTCTTGACAGACTTCCTTTGTT
GC
Done.