Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 109 of 207
Found at i:32821038 original size:50 final size:50
Alignment explanation
Indices: 32820957--32821200 Score: 267
Period size: 50 Copynumber: 4.9 Consensus size: 50
32820947 CCTTGAGATC
* *
32820957 ATGAGAGGTCCCATGTAAGACCATGTTTGGAACATGGCGTTGGCACCAAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGAACATGGCATTGGCACCAAG
* *
32821007 ACGAGAGGTCCCATGTAAGACCATGTCTGGAACATGGCATTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGAACATGGCATTGGCACCAAG
** * * *
32821057 ATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCAAT
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGAACATGGCATTGGCACCAAG
** * * * ** *
32821107 ATGAGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA-GTAC
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGAACATGGCATTGGCACCAAG
* ** * *
32821156 ATGAAACATCCCATGTAAGACCATGT-TTGAGACATGGCTTTGGCA
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGA-ACATGGCATTGGCA
32821201 TGTTATTATC
Statistics
Matches: 164, Mismatches: 29, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
48 2 0.01
49 35 0.21
50 127 0.77
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.22
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGAACATGGCATTGGCACCAAG
Found at i:32821077 original size:167 final size:166
Alignment explanation
Indices: 32820793--32821101 Score: 449
Period size: 167 Copynumber: 1.9 Consensus size: 166
32820783 GCACCAAGAC
* * *
32820793 GAGAGGTCCCATGTAAGACCATGTCTGGGAAAGGCATTGGCACCGAGATGAGAGGTCCCCCGTAA
1 GAGAGGTCCCATGTAAGACCATGTCTGGGAAAGGCATTGGCACCAAGACGAGAGGTCCCACGTAA
* * * *
32820858 GACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCCCATGTAAGACCATATCTGGGAT
66 GACCATGTCTGGAACATGGCATGGGCACCGAGATGAGAACTCCCACGTAAGACCATATCTGGGAC
*
32820923 ATGGCATTGGCAGTACATTGGCATCCTTGAGATCAT
131 ATGGCATGGGCAGTACATTGGCATCCTTGAGATCAT
* * *
32820959 GAGAGGTCCCATGTAAGACCATGT-TTGGAACATGGCGTTGGCACCAAGACGAGAGGTCCCATGT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGAA-A-GGCATTGGCACCAAGACGAGAGGTCCCACGT
* ** * *
32821023 AAGACCATGTCTGGAACATGGCATTGGCACCGAGATGAGAGGTCCCCCGTAAGACCATGTCTGGG
64 AAGACCATGTCTGGAACATGGCATGGGCACCGAGATGAGAACTCCCACGTAAGACCATATCTGGG
32821088 ACATGGCATGGGCA
129 ACATGGCATGGGCA
32821102 CCAATATGAG
Statistics
Matches: 125, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
165 5 0.04
166 25 0.20
167 95 0.76
ACGTcount: A:0.27, C:0.23, G:0.30, T:0.20
Consensus pattern (166 bp):
GAGAGGTCCCATGTAAGACCATGTCTGGGAAAGGCATTGGCACCAAGACGAGAGGTCCCACGTAA
GACCATGTCTGGAACATGGCATGGGCACCGAGATGAGAACTCCCACGTAAGACCATATCTGGGAC
ATGGCATGGGCAGTACATTGGCATCCTTGAGATCAT
Found at i:32821134 original size:217 final size:216
Alignment explanation
Indices: 32820722--32821157 Score: 820
Period size: 217 Copynumber: 2.0 Consensus size: 216
32820712 TGGGACATGG
*
32820722 CATTGGCATCCTTGAGATCATGAGAGGTCCCATGTAAGACCATGTTTGGGACATGACGTTGGCAC
1 CATTGGCATCCTTGAGATCATGAGAGGTCCCATGTAAGACCATGTTTGGAACATGACGTTGGCAC
32820787 CAAGACGAGAGGTCCCATGTAAGACCATGTCTGGGAAAGGCATTGGCACCGAGATGAGAGGTCCC
66 CAAGACGAGAGGTCCCATGTAAGACCATGTCTGGGAAAGGCATTGGCACCGAGATGAGAGGTCCC
*
32820852 CCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCCCATGTAAGACCATATC
131 CCGTAAGACCATGTCTGGGACATGGCATGGGCACCAATATGAGAACTCCCATGTAAGACCATATC
32820917 TGGGATATGGCATTGGCAGTA
196 TGGGATATGGCATTGGCAGTA
*
32820938 CATTGGCATCCTTGAGATCATGAGAGGTCCCATGTAAGACCATGTTTGGAACATGGCGTTGGCAC
1 CATTGGCATCCTTGAGATCATGAGAGGTCCCATGTAAGACCATGTTTGGAACATGACGTTGGCAC
32821003 CAAGACGAGAGGTCCCATGTAAGACCATGTCT-GGAACATGGCATTGGCACCGAGATGAGAGGTC
66 CAAGACGAGAGGTCCCATGTAAGACCATGTCTGGGAA-A-GGCATTGGCACCGAGATGAGAGGTC
32821067 CCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCAATATGAGAACTCCCATGTAAGACCATA
129 CCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCAATATGAGAACTCCCATGTAAGACCATA
32821132 TCTGGGATATGGCATTGGCAGTA
194 TCTGGGATATGGCATTGGCAGTA
32821155 CAT
1 CAT
32821158 GAAACATCCC
Statistics
Matches: 215, Mismatches: 3, Indels: 3
0.97 0.01 0.01
Matches are distributed among these distances:
215 4 0.02
216 96 0.45
217 115 0.53
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (216 bp):
CATTGGCATCCTTGAGATCATGAGAGGTCCCATGTAAGACCATGTTTGGAACATGACGTTGGCAC
CAAGACGAGAGGTCCCATGTAAGACCATGTCTGGGAAAGGCATTGGCACCGAGATGAGAGGTCCC
CCGTAAGACCATGTCTGGGACATGGCATGGGCACCAATATGAGAACTCCCATGTAAGACCATATC
TGGGATATGGCATTGGCAGTA
Found at i:32826771 original size:80 final size:80
Alignment explanation
Indices: 32826638--32826797 Score: 295
Period size: 80 Copynumber: 2.0 Consensus size: 80
32826628 AACCACATGA
*
32826638 ATACATTCATGGAAAAAACCTATCCTTTTAACGATTTTGCAAATTAGTCCCTGGGCTAGCTAGAT
1 ATACATTCATGGAAAAAACCTAACCTTTTAACGATTTTGCAAATTAGTCCCTGGGCTAGCTAGAT
32826703 TAAGCTACAACGACT
66 TAAGCTACAACGACT
32826718 ATACATTCATGGAAAAAACCTAACCTTTTAAC-AGTTTTGCAAATTAGTCCCTGGGCTAGCTAGA
1 ATACATTCATGGAAAAAACCTAACCTTTTAACGA-TTTTGCAAATTAGTCCCTGGGCTAGCTAGA
32826782 TTAAGCTACAACGACT
65 TTAAGCTACAACGACT
32826798 CCAAAAACAT
Statistics
Matches: 78, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
79 1 0.01
80 77 0.99
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.29
Consensus pattern (80 bp):
ATACATTCATGGAAAAAACCTAACCTTTTAACGATTTTGCAAATTAGTCCCTGGGCTAGCTAGAT
TAAGCTACAACGACT
Found at i:32827604 original size:24 final size:24
Alignment explanation
Indices: 32827566--32827622 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 24
32827556 ATAGAATATG
* *
32827566 CCACAAAGGTATTTACAGAATACA
1 CCACAAAGGCATTTACAAAATACA
* * *
32827590 CCACAAAGGCGTTTATAAAATACG
1 CCACAAAGGCATTTACAAAATACA
*
32827614 CTACAAAGG
1 CCACAAAGG
32827623 TGTCATAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.44, C:0.21, G:0.16, T:0.19
Consensus pattern (24 bp):
CCACAAAGGCATTTACAAAATACA
Found at i:32829787 original size:17 final size:17
Alignment explanation
Indices: 32829765--32829804 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
32829755 CAACTTGAAT
*
32829765 TCTTTTTCATTTTTTTC-
1 TCTTTTTC-TCTTTTTCG
32829782 TCTTTTTCTCTTTTTCG
1 TCTTTTTCTCTTTTTCG
32829799 TCTTTT
1 TCTTTT
32829805 CTTGATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.03, C:0.20, G:0.03, T:0.75
Consensus pattern (17 bp):
TCTTTTTCTCTTTTTCG
Found at i:32831611 original size:7 final size:7
Alignment explanation
Indices: 32831557--32831677 Score: 52
Period size: 7 Copynumber: 15.9 Consensus size: 7
32831547 ATATATCTTT
32831557 TATTATA
1 TATTATA
32831564 -ATCTATA
1 TAT-TATA
*
32831571 TTATAATA
1 -TATTATA
32831579 TAGTTATA
1 TA-TTATA
32831587 T-TTA-A
1 TATTATA
32831592 TATTAGTA
1 TATTA-TA
*
32831600 CATTATA
1 TATTATA
32831607 TATTACT-
1 TATTA-TA
32831614 TATTATA
1 TATTATA
32831621 TATTATTGAA
1 TATTA-T--A
*
32831631 TATTAAA
1 TATTATA
32831638 TATTCATA
1 TATT-ATA
*
32831646 TTTTTAGTAA
1 -TATTA-T-A
32831656 TAATTATA
1 T-ATTATA
32831664 TATTATAA
1 TATTAT-A
32831672 TATTAT
1 TATTAT
32831678 TTTATGTAAT
Statistics
Matches: 88, Mismatches: 8, Indels: 35
0.67 0.06 0.27
Matches are distributed among these distances:
5 2 0.02
6 9 0.10
7 32 0.36
8 27 0.31
9 8 0.09
10 10 0.11
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.52
Consensus pattern (7 bp):
TATTATA
Found at i:32831727 original size:49 final size:46
Alignment explanation
Indices: 32831653--32831759 Score: 123
Period size: 49 Copynumber: 2.3 Consensus size: 46
32831643 ATATTTTTAG
* *
32831653 TAATAA-TT-ATATA-T-TATAATATTATTTTATGTAATAGTAATG
1 TAATAATTTAATATATTATATAATATTATTTTATGTAATACTAATA
*
32831695 TAATACATTATAATATATTATATATATATTATTTTATGTATTACTAATA
1 TAATA-ATT-TAATATATTATATA-ATATTATTTTATGTAATACTAATA
*
32831744 TACTAATTTAATATAT
1 TAATAATTTAATATAT
32831760 CGTTTTAAGG
Statistics
Matches: 54, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
42 5 0.09
43 1 0.02
44 1 0.02
45 1 0.02
46 5 0.09
47 9 0.17
48 7 0.13
49 25 0.46
ACGTcount: A:0.43, C:0.03, G:0.04, T:0.50
Consensus pattern (46 bp):
TAATAATTTAATATATTATATAATATTATTTTATGTAATACTAATA
Found at i:32831753 original size:23 final size:23
Alignment explanation
Indices: 32831710--32831753 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
32831700 CATTATAATA
* *
32831710 TATTATATATATATTATTTTATG
1 TATTATATATATACTAATTTATG
32831733 TATTACTA-ATATACTAATTTA
1 TATTA-TATATATACTAATTTA
32831754 ATATATCGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 16 0.89
24 2 0.11
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.55
Consensus pattern (23 bp):
TATTATATATATACTAATTTATG
Found at i:32831880 original size:17 final size:16
Alignment explanation
Indices: 32831850--32831882 Score: 57
Period size: 16 Copynumber: 2.0 Consensus size: 16
32831840 AATTTTATAG
32831850 ATTTTAAAAATTATTA
1 ATTTTAAAAATTATTA
32831866 ATTTTAAAAATTTATTA
1 ATTTTAAAAA-TTATTA
32831883 TACATATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
ATTTTAAAAATTATTA
Found at i:32836780 original size:12 final size:12
Alignment explanation
Indices: 32836763--32836787 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32836753 TGCTTTTGTG
32836763 AGTTCAAATTAT
1 AGTTCAAATTAT
32836775 AGTTCAAATTAT
1 AGTTCAAATTAT
32836787 A
1 A
32836788 TTTTTTAGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (12 bp):
AGTTCAAATTAT
Found at i:32841556 original size:18 final size:17
Alignment explanation
Indices: 32841524--32841567 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
32841514 ATTTTATTAA
* * *
32841524 AATTTTTATATATTTTT
1 AATTTTTTTAAATTTAT
32841541 AGATTTTTTTAAATTTAT
1 A-ATTTTTTTAAATTTAT
32841559 AATTTTTTT
1 AATTTTTTT
32841568 TAAAAAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 9 0.39
18 14 0.61
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (17 bp):
AATTTTTTTAAATTTAT
Found at i:32841586 original size:21 final size:22
Alignment explanation
Indices: 32841551--32841592 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
32841541 AGATTTTTTT
* *
32841551 AAATTTATAATTTTTTTTAAAA
1 AAATTTATAAATTTTTATAAAA
32841573 AAATTTA-AAATTTTTATAAA
1 AAATTTATAAATTTTTATAAA
32841593 TATTTTGAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
AAATTTATAAATTTTTATAAAA
Found at i:32841611 original size:18 final size:19
Alignment explanation
Indices: 32841564--32841617 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
32841554 TTTATAATTT
* *
32841564 TTTTTAAAAAAATTTAAAA
1 TTTTTAAAAATATTTTAAA
* *
32841583 TTTTTATAAATATTTTGAA
1 TTTTTAAAAATATTTTAAA
32841602 -TTTTAAAAATTATTTT
1 TTTTTAAAAA-TATTTT
32841618 CAAAATTTGA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
18 8 0.28
19 21 0.72
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (19 bp):
TTTTTAAAAATATTTTAAA
Found at i:32844291 original size:100 final size:100
Alignment explanation
Indices: 32844066--32844347 Score: 402
Period size: 100 Copynumber: 2.8 Consensus size: 100
32844056 CCACGTTGCA
*
32844066 AGCATCCATATATTTTCAGAATTTGTTGCATGCATAACATACTCATTCATTGTGATTACGCACAA
1 AGCATCCATATATTTTCAGAATTTGTTGCATGCATAACATACTCATTCACTGTGATTA--CACAA
*
32844131 CCATAGAAAATTACACAGAATTCATACCAAACATTTG
64 CCATAGAAAATTACACAAAATTCATACCAAACATTTG
* * * * *
32844168 ATCATCCATATATATTCAGAATTTGTTGCATGCATAGCATACTCATTCACTGTGATTACATAGCC
1 AGCATCCATATATTTTCAGAATTTGTTGCATGCATAACATACTCATTCACTGTGATTACACAACC
* * *
32844233 ATAGAAAATTATACAAAATTCATAGCATACATTTG
66 ATAGAAAATTACACAAAATTCATACCAAACATTTG
* * *
32844268 AGCATCCATATATTTTCACAATTTGTTGCATGCATAATATACTCATTCACCGTGATTACACACAA
1 AGCATCCATATATTTTCAGAATTTGTTGCATGCATAACATACTCATTCACTGTGATT--ACACAA
*
32844333 CCGTAGAAAATTACA
64 CCATAGAAAATTACA
32844348 TAGAGTTCAT
Statistics
Matches: 158, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
100 87 0.55
102 71 0.45
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.32
Consensus pattern (100 bp):
AGCATCCATATATTTTCAGAATTTGTTGCATGCATAACATACTCATTCACTGTGATTACACAACC
ATAGAAAATTACACAAAATTCATACCAAACATTTG
Found at i:32847069 original size:27 final size:27
Alignment explanation
Indices: 32847039--32847090 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
32847029 AAAATAATTA
*
32847039 AATTTAA-TATGTTCATAATTTGAGTGC
1 AATTTAATTAT-TTCATAATTAGAGTGC
*
32847066 AATTTAATTATTTTATAATTAGAGT
1 AATTTAATTATTTCATAATTAGAGT
32847091 ATGAATTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 19 0.86
28 3 0.14
ACGTcount: A:0.37, C:0.04, G:0.12, T:0.48
Consensus pattern (27 bp):
AATTTAATTATTTCATAATTAGAGTGC
Found at i:32849703 original size:388 final size:388
Alignment explanation
Indices: 32848987--32849763 Score: 1545
Period size: 388 Copynumber: 2.0 Consensus size: 388
32848977 AAAGAAGTGG
32848987 TATCACAGGTGTAGTAAGGAGGTCAAAGGTTCAAGTCTCACTGCATGTAAATGGGATTATTTATT
1 TATCACAGGTGTAGTAAGGAGGTCAAAGGTTCAAGTCTCACTGCATGTAAATGGGATTATTTATT
32849052 TTGCTCATAAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGTGTTAGAGAGTTTTAATGGGTC
66 TTGCTCATAAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGTGTTAGAGAGTTTTAATGGGTC
32849117 AAATGAGTAGATCATGGAGGAAATTAAGGAAGGGGTCATGGAGAGGTAAGGGGAGGAAATCAAGG
131 AAATGAGTAGATCATGGAGGAAATTAAGGAAGGGGTCATGGAGAGGTAAGGGGAGGAAATCAAGG
32849182 GAAGTTGGGTAGGTGAAAGTTGGTGCCAAAATAGGGTCTTTGCTTTTGGAAATTCGGCTAGTGCG
196 GAAGTTGGGTAGGTGAAAGTTGGTGCCAAAATAGGGTCTTTGCTTTTGGAAATTCGGCTAGTGCG
*
32849247 TTGTAGGGATGACATTTTTCTTTTAGTCATTTCGGCTTTTGGCTCATTTCGAACAATACTTCTTT
261 TTGTAGGGATGACATTTTTCTTTTAGTCATTTCGGCTTTTGGCTCATTTCGAACAATACTCCTTT
32849312 TCTCTGCTATTTTTCTTTTCAACAATTGCTGCTTGTGCCAATTCTCCCTTTATTCTCCTCCTC
326 TCTCTGCTATTTTTCTTTTCAACAATTGCTGCTTGTGCCAATTCTCCCTTTATTCTCCTCCTC
32849375 TATCACAGGTGTAGTAAGGAGGTCAAAGGTTCAAGTCTCACTGCATGTAAATGGGATTATTTATT
1 TATCACAGGTGTAGTAAGGAGGTCAAAGGTTCAAGTCTCACTGCATGTAAATGGGATTATTTATT
32849440 TTGCTCATAAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGTGTTAGAGAGTTTTAATGGGTC
66 TTGCTCATAAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGTGTTAGAGAGTTTTAATGGGTC
32849505 AAATGAGTAGATCATGGAGGAAATTAAGGAAGGGGTCATGGAGAGGTAAGGGGAGGAAATCAAGG
131 AAATGAGTAGATCATGGAGGAAATTAAGGAAGGGGTCATGGAGAGGTAAGGGGAGGAAATCAAGG
32849570 GAAGTTGGGTAGGTGAAAGTTGGTGCCAAAATAGGGTCTTTGCTTTTGGAAATTCGGCTAGTGCG
196 GAAGTTGGGTAGGTGAAAGTTGGTGCCAAAATAGGGTCTTTGCTTTTGGAAATTCGGCTAGTGCG
32849635 TTGTAGGGATGACATTTTTCTTTTAGTCATTTCGGCTTTTGGCTCATTTCGAACAATACTCCTTT
261 TTGTAGGGATGACATTTTTCTTTTAGTCATTTCGGCTTTTGGCTCATTTCGAACAATACTCCTTT
32849700 TCTCTGCTATTTTTCTTTTCAACAATTGCTGCTTGTGCCAATTCTCCCTTTATTCTCCTCCTC
326 TCTCTGCTATTTTTCTTTTCAACAATTGCTGCTTGTGCCAATTCTCCCTTTATTCTCCTCCTC
32849763 T
1 T
32849764 TGGCACTTTT
Statistics
Matches: 388, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
388 388 1.00
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.35
Consensus pattern (388 bp):
TATCACAGGTGTAGTAAGGAGGTCAAAGGTTCAAGTCTCACTGCATGTAAATGGGATTATTTATT
TTGCTCATAAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGTGTTAGAGAGTTTTAATGGGTC
AAATGAGTAGATCATGGAGGAAATTAAGGAAGGGGTCATGGAGAGGTAAGGGGAGGAAATCAAGG
GAAGTTGGGTAGGTGAAAGTTGGTGCCAAAATAGGGTCTTTGCTTTTGGAAATTCGGCTAGTGCG
TTGTAGGGATGACATTTTTCTTTTAGTCATTTCGGCTTTTGGCTCATTTCGAACAATACTCCTTT
TCTCTGCTATTTTTCTTTTCAACAATTGCTGCTTGTGCCAATTCTCCCTTTATTCTCCTCCTC
Found at i:32850838 original size:27 final size:26
Alignment explanation
Indices: 32850808--32850984 Score: 120
Period size: 27 Copynumber: 6.5 Consensus size: 26
32850798 GGTCGTAATA
32850808 CCCCATAAGGGTAAAATTACCGAAATG
1 CCCC-TAAGGGTAAAATTACCGAAATG
* *
32850835 CCCCTGAAGGATAAAATTATCGAAATG
1 CCCCT-AAGGGTAAAATTACCGAAATG
* * * *
32850862 CCCTCGAAAGGTAAAATTACTGAAATAC
1 CCC-CTAAGGGTAAAATTACCGAAAT-G
* * * *
32850890 CCCCGAAGAGTAAAATTATCGAAATA
1 CCCCTAAGGGTAAAATTACCGAAATG
** * * *
32850916 CCATTGAAAGGTAAAATTACCAAAATA
1 CCCCT-AAGGGTAAAATTACCGAAATG
* ** *
32850943 CCCCTGATGGGTAAAATGGCCGTAATG
1 CCCCT-AAGGGTAAAATTACCGAAATG
32850970 CCCCTAGAGGGTAAA
1 CCCCTA-AGGGTAAA
32850985 TGACTGATTT
Statistics
Matches: 115, Mismatches: 30, Indels: 10
0.74 0.19 0.06
Matches are distributed among these distances:
26 4 0.03
27 107 0.93
28 4 0.03
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (26 bp):
CCCCTAAGGGTAAAATTACCGAAATG
Found at i:32850880 original size:54 final size:54
Alignment explanation
Indices: 32850817--32850959 Score: 189
Period size: 54 Copynumber: 2.6 Consensus size: 54
32850807 ACCCCATAAG
* * *
32850817 GGTAAAATTACCGAAATGCCCCTGAAGGATAAAATTATCGAAATGCCCTCGAAA
1 GGTAAAATTACCGAAATACCCCTGAAGGATAAAATTATCGAAATACCATCGAAA
* * *
32850871 GGTAAAATTACTGAAATACCCCCGAA-GAGTAAAATTATCGAAATACCATTGAAA
1 GGTAAAATTACCGAAATACCCCTGAAGGA-TAAAATTATCGAAATACCATCGAAA
* * *
32850925 GGTAAAATTACCAAAATACCCCTGATGGGTAAAAT
1 GGTAAAATTACCGAAATACCCCTGAAGGATAAAAT
32850960 GGCCGTAATG
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
53 2 0.03
54 73 0.96
55 1 0.01
ACGTcount: A:0.43, C:0.18, G:0.17, T:0.22
Consensus pattern (54 bp):
GGTAAAATTACCGAAATACCCCTGAAGGATAAAATTATCGAAATACCATCGAAA
Found at i:32854040 original size:21 final size:23
Alignment explanation
Indices: 32854015--32854065 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
32854005 CTCCTAATGT
* *
32854015 TATATAAAGACAACAATA-ATTAA
1 TATAT-AAGAAAAAAATATATTAA
*
32854038 TATATAATAAAAAAATATATTAA
1 TATATAAGAAAAAAATATATTAA
32854061 TATAT
1 TATAT
32854066 TATTTGTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 9 0.38
23 15 0.62
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (23 bp):
TATATAAGAAAAAAATATATTAA
Found at i:32856220 original size:28 final size:27
Alignment explanation
Indices: 32856178--32856258 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 27
32856168 CTCGCTAGTG
*
32856178 AGGA-TTCACTAGTGTTTTCAGCGAACT
1 AGGAGTTCACCAGTGTTTT-AGCGAACT
* *
32856205 AGGAGTTCCCCAGTGTTTTGGCGAACT
1 AGGAGTTCACCAGTGTTTTAGCGAACT
* * *
32856232 GGGAGTTCACCAGTGTTCTATCGAACT
1 AGGAGTTCACCAGTGTTTTAGCGAACT
32856259 GGTTCCTGTC
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
27 33 0.73
28 12 0.27
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (27 bp):
AGGAGTTCACCAGTGTTTTAGCGAACT
Found at i:32865590 original size:54 final size:54
Alignment explanation
Indices: 32865532--32865645 Score: 140
Period size: 54 Copynumber: 2.1 Consensus size: 54
32865522 TCACCCATGC
* * * **
32865532 AACTCACTAAGA-TGCCCCACACACCCGTGTGCTAGGCTGTGTGCTTGGTCGTGT
1 AACTCACTAA-ATTGCCACACACACCCGTGTGCCAGGCCGTGCACTTGGTCGTGT
* *
32865586 AACTCTCTAAATTGCCACACACGCCCGTGTGCCAGGCCGTGCACTTGGTCGTGT
1 AACTCACTAAATTGCCACACACACCCGTGTGCCAGGCCGTGCACTTGGTCGTGT
*
32865640 AGCTCA
1 AACTCA
32865646 TTGACTTGAA
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
53 1 0.02
54 49 0.98
ACGTcount: A:0.19, C:0.32, G:0.25, T:0.25
Consensus pattern (54 bp):
AACTCACTAAATTGCCACACACACCCGTGTGCCAGGCCGTGCACTTGGTCGTGT
Found at i:32868715 original size:26 final size:26
Alignment explanation
Indices: 32868684--32868754 Score: 99
Period size: 26 Copynumber: 2.7 Consensus size: 26
32868674 CGTTCTGACC
32868684 CACAGCTCGTGTGAGCA-AGCCCATTT
1 CACAGCTCGTGTGAGCATA-CCCATTT
* *
32868710 CACAGCTCGTGTGAGCATACTCTTTT
1 CACAGCTCGTGTGAGCATACCCATTT
*
32868736 CATAGCTCGTGTGAGCATA
1 CACAGCTCGTGTGAGCATA
32868755 TATGTAAAGG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 40 0.98
27 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.28
Consensus pattern (26 bp):
CACAGCTCGTGTGAGCATACCCATTT
Found at i:32874353 original size:56 final size:51
Alignment explanation
Indices: 32874287--32874457 Score: 175
Period size: 50 Copynumber: 3.3 Consensus size: 51
32874277 GAGAATGAGA
* * **
32874287 TCCCATGTAAGACCATGTCTGGTACATGGCATTGGCATTATTGAGGTTATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCA--ACCGA-G--ATGAGAGG
*
32874343 TCCCACGTAAGACCATGTCTGGGATATGGCATTGGC-ACCGAGATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCAACCGAGATGAGAGG
* * * * **
32874393 TTCCTCGTAAGACCATGTCTGGGACATGGCATGGGC-ACCGATATGAGAAC
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCAACCGAGATGAGAGG
*
32874443 TCCCATGTAAGACCA
1 TCCCACGTAAGACCA
32874458 AATTTGGGAT
Statistics
Matches: 100, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
50 63 0.63
52 1 0.01
53 3 0.03
56 33 0.33
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (51 bp):
TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCAACCGAGATGAGAGG
Found at i:32874466 original size:50 final size:50
Alignment explanation
Indices: 32874334--32874471 Score: 170
Period size: 50 Copynumber: 2.8 Consensus size: 50
32874324 TTATTGAGGT
* *
32874334 TATGAGAGGTCCCACGTAAGACCATGTCTGGGATATGGCATTGGCACCGA
1 TATGAGAGGTCCCATGTAAGACCATGTCTGGGATATGGCATGGGCACCGA
* * *
32874384 GATGAGAGGTTCC-TCGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
1 TATGAGAGGTCCCAT-GTAAGACCATGTCTGGGATATGGCATGGGCACCGA
** ** *
32874434 TATGAGAACTCCCATGTAAGACCAAATTTGGGATATGG
1 TATGAGAGGTCCCATGTAAGACCATGTCTGGGATATGG
32874472 AATTAGCAGT
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
50 72 0.99
51 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (50 bp):
TATGAGAGGTCCCATGTAAGACCATGTCTGGGATATGGCATGGGCACCGA
Found at i:32874755 original size:20 final size:20
Alignment explanation
Indices: 32874730--32874768 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
32874720 TGAGTTATTT
32874730 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
32874750 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
32874769 GAAGAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:32882002 original size:50 final size:48
Alignment explanation
Indices: 32881963--32882104 Score: 149
Period size: 50 Copynumber: 2.9 Consensus size: 48
32881953 TATTGAGGTT
*
32881963 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCAAG
1 ATGAGAGGTCCCACATAAGACCATGTCTGGGACATGGCATT-G-ACCAAG
* * *
32882013 ATGAGAGGTCCCCCATAAGACCATGTCTGGGACATGGCATGTGCACCGAT
1 ATGAGAGGTCCCACATAAGACCATGTCTGGGACATGGCAT-TG-ACCAAG
** *** * *
32882063 ATGAGAACTCCCGTGTAAGACCATATCTGGGATATGGCATTG
1 ATGAGAGGTCCCACATAAGACCATGTCTGGGACATGGCATTG
32882105 GCAGTAGAGG
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
49 2 0.03
50 77 0.96
51 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.21
Consensus pattern (48 bp):
ATGAGAGGTCCCACATAAGACCATGTCTGGGACATGGCATTGACCAAG
Found at i:32882149 original size:49 final size:49
Alignment explanation
Indices: 32881979--32882156 Score: 152
Period size: 50 Copynumber: 3.6 Consensus size: 49
32881969 GGTCCCACGT
* * * *
32881979 AAGACCATGTCTGGGACATGGCATTGGCACCAAGATGAGAGGTCCCCCAT--
1 AAGACCATGTCTGGGACATGGCATTGGCA-CGATATGAGA--ACTCCCATGG
* *
32882029 AAGACCATGTCTGGGACATGGCA-TGTGCACCGATATGAGAACTCCCGTGT
1 AAGACCATGTCTGGGACATGGCATTG-GCA-CGATATGAGAACTCCCATGG
* *
32882079 AAGACCATATCTGGGATATGGCATTGGCA-G-TA-GAGGAAACATCCCATGG
1 AAGACCATGTCTGGGACATGGCATTGGCACGATATGA-G-AAC-TCCCATGG
* *
32882128 AAGACCATGTTTGGGACATGGCTTTGGCA
1 AAGACCATGTCTGGGACATGGCATTGGCA
32882157 TGTTATTATC
Statistics
Matches: 108, Mismatches: 13, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
46 2 0.02
47 3 0.03
48 9 0.08
49 33 0.31
50 59 0.55
51 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.21
Consensus pattern (49 bp):
AAGACCATGTCTGGGACATGGCATTGGCACGATATGAGAACTCCCATGG
Found at i:32882383 original size:20 final size:20
Alignment explanation
Indices: 32882358--32882396 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
32882348 TGAGTTATTT
32882358 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
32882378 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
32882397 GAAGAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:32894588 original size:19 final size:18
Alignment explanation
Indices: 32894542--32894589 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
32894532 CAAGATAAAC
*
32894542 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATACTTAAT
32894559 ATTAAGA-TAATCACTTAAT
1 ATTAA-ATTAAT-ACTTAAT
32894578 ATTAAATTAATA
1 ATTAAATTAATA
32894590 AAATACTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
17 8 0.31
18 3 0.12
19 15 0.58
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (18 bp):
ATTAAATTAATACTTAAT
Found at i:32894635 original size:37 final size:38
Alignment explanation
Indices: 32894558--32894643 Score: 97
Period size: 37 Copynumber: 2.3 Consensus size: 38
32894548 TTAAATTTAA
*
32894558 TATTAAGATAATCACTTAATATTAAATTAATAAAATAC
1 TATTAAGATAAGCACTTAATATTAAATTAATAAAATAC
* *
32894596 TATTAAGATAAGCA-TTAA-ATTTAATTTAATATTAA-AC
1 TATTAAGATAAGCACTTAATA-TTAAATTAATA-AAATAC
*
32894633 TATTAAAATAA
1 TATTAAGATAA
32894644 TATTATTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
36 1 0.02
37 26 0.62
38 15 0.36
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.38
Consensus pattern (38 bp):
TATTAAGATAAGCACTTAATATTAAATTAATAAAATAC
Found at i:32895082 original size:19 final size:19
Alignment explanation
Indices: 32895049--32895088 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
32895039 AAAGTATCAT
*
32895049 ATTAATTTTAATTTATTTG
1 ATTAATTTTAATTTACTTG
32895068 ATTAA-TTTAATTTTACTTG
1 ATTAATTTTAA-TTTACTTG
32895087 AT
1 AT
32895089 CAAAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.60
Consensus pattern (19 bp):
ATTAATTTTAATTTACTTG
Found at i:32908776 original size:21 final size:21
Alignment explanation
Indices: 32908752--32908792 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
32908742 TCAAAAAAGC
**
32908752 TCTCAAATTTCTCTTTAAATT
1 TCTCAAAGCTCTCTTTAAATT
32908773 TCTCAAAGCTCTCTTTAAAT
1 TCTCAAAGCTCTCTTTAAAT
32908793 CACAATTTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.02, T:0.46
Consensus pattern (21 bp):
TCTCAAAGCTCTCTTTAAATT
Found at i:32908984 original size:18 final size:20
Alignment explanation
Indices: 32908944--32908994 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 20
32908934 CTAATTTCAA
*
32908944 TTTTTTAATATTATTTAATT
1 TTTTTTAATATTATGTAATT
*
32908964 TTTTTTCAT-TTATGTAATT
1 TTTTTTAATATTATGTAATT
**
32908983 TTAATTAATATT
1 TTTTTTAATATT
32908995 TATTTATGAT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTTTTAATATTATGTAATT
Found at i:32909951 original size:7 final size:7
Alignment explanation
Indices: 32909939--32909971 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
32909929 TAGTCGTTTC
32909939 GTATTTA
1 GTATTTA
32909946 GTATTTA
1 GTATTTA
32909953 GTATTTA
1 GTATTTA
32909960 GTATTTA
1 GTATTTA
32909967 GTATT
1 GTATT
32909972 ACGTATATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:32911032 original size:59 final size:61
Alignment explanation
Indices: 32910940--32911068 Score: 192
Period size: 59 Copynumber: 2.1 Consensus size: 61
32910930 TGTATTGATT
* * *
32910940 TTTTTAATATATTTGTACAAATTGTTTTTATATTGTT-T-C-ATTTAATAAAATAGAAGTTG
1 TTTTTAATATATTTGTACAAATTATTTTTATATT-TTGTCCTATTTAATAAAATAAAAGTTC
32910999 TTTTTAATATATTTGTACAAATTATTTTTATATTTTGTCCTATTTAATAAAATAAAAGTTC
1 TTTTTAATATATTTGTACAAATTATTTTTATATTTTGTCCTATTTAATAAAATAAAAGTTC
*
32911060 TTTTGAATA
1 TTTTTAATA
32911069 AGGCAATAGA
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
58 2 0.03
59 34 0.54
60 1 0.02
61 26 0.41
ACGTcount: A:0.35, C:0.05, G:0.08, T:0.53
Consensus pattern (61 bp):
TTTTTAATATATTTGTACAAATTATTTTTATATTTTGTCCTATTTAATAAAATAAAAGTTC
Found at i:32913208 original size:3 final size:3
Alignment explanation
Indices: 32913200--32913225 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
32913190 GAATCGCGGA
32913200 TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TC
32913226 ATCCGAACCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TCT
Found at i:32913664 original size:35 final size:35
Alignment explanation
Indices: 32913624--32913698 Score: 141
Period size: 35 Copynumber: 2.1 Consensus size: 35
32913614 CTAACGGAGT
32913624 GTAGAGTAGGGGTCGTGTATTCCTCTCGAATAGCA
1 GTAGAGTAGGGGTCGTGTATTCCTCTCGAATAGCA
32913659 GTAGAGTAGGGGTCGTGTATTCCTCTCGAATAGCA
1 GTAGAGTAGGGGTCGTGTATTCCTCTCGAATAGCA
*
32913694 ATAGA
1 GTAGA
32913699 TGTTGAAATC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (35 bp):
GTAGAGTAGGGGTCGTGTATTCCTCTCGAATAGCA
Found at i:32914220 original size:25 final size:25
Alignment explanation
Indices: 32914150--32914221 Score: 74
Period size: 25 Copynumber: 2.9 Consensus size: 25
32914140 TAACTTCTAC
* *
32914150 CTTCTCAACTTCTTTAATTTATAAT
1 CTTCTAAACTTCTTTAATTTCTAAT
* * *
32914175 CTCCTTAACTT-TTTCAATTTCTATT
1 CTTCTAAACTTCTTT-AATTTCTAAT
*
32914200 CTTCTAAACTTCTCTAATTTCT
1 CTTCTAAACTTCTTTAATTTCT
32914222 TTTACTGTAA
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
24 3 0.08
25 33 0.87
26 2 0.05
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.53
Consensus pattern (25 bp):
CTTCTAAACTTCTTTAATTTCTAAT
Found at i:32914514 original size:124 final size:125
Alignment explanation
Indices: 32914289--32914943 Score: 665
Period size: 123 Copynumber: 5.4 Consensus size: 125
32914279 AAGCAGGATG
* * * * *
32914289 TACTGTAGAAAAAAAGTGTCTAGGTGAGAGCTTTTTTCAATACTTTTGCTGACAGTGCATCC-GA
1 TACTGTAGAAAAAGAGTGTCCAGGTGGGAGCTTTTTTTAGTACTTTTGCTGACAGTGCATCCTG-
* ** *
32914353 CTTGAAGTGTTTTTGACTGTATCTTTTCAGAACCATCTTCTCAAAATTATTTTTTTAGAAAC
65 CTTGAAGCGTTTTTGACCCTATTTTTTCAGAACCATCTTCTCAAAATTA-TTTTTTAGAAAC
* * *
32914415 TACTGTAGAAAAAGAGTGTCCA-GTGGGAG-TTTTTTTAGTAATTTTGTTGACAGTGCATCCTGT
1 TACTGTAGAAAAAGAGTGTCCAGGTGGGAGCTTTTTTTAGTACTTTTGCTGACAGTGCATCCTGC
* *
32914478 TTGAAGTGTTTTTGACCCTATCTTTTT-AGAATCATCTTCTCAAAATTATTTTTTAGAAAC
66 TTGAAGCGTTTTTGACCCTAT-TTTTTCAGAACCATCTTCTCAAAATTATTTTTTAGAAAC
* * * *
32914538 TACTATA-AAAAAGAGCGTCCAAGTGGGAGC-TTTTTTAGTACTTTTGCTGACAATGCATCCTGC
1 TACTGTAGAAAAAGAGTGTCCAGGTGGGAGCTTTTTTTAGTACTTTTGCTGACAGTGCATCCTGC
* * *
32914601 TTGAAGCGTTTTTTACACTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTCAGAAAC
66 TTGAAGCGTTTTTGACCCTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTTAGAAAC
* * **
32914661 TACTGTAGAAAAAGAGTGTCTAGGTGGGAGCTTTTTTTAGTACTTTTGTTGACAGTGCATCCTAA
1 TACTGTAGAAAAAGAGTGTCCAGGTGGGAGCTTTTTTTAGTACTTTTGCTGACAGTGCATCCTGC
* * * *
32914726 TTGAAACATTTTTTACCCTATTTTTTCAGAACCATCTT-T-----TCA------A-AAAC
66 TTGAAGCGTTTTTGACCCTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTTAGAAAC
* * * * * * * *
32914773 TACAGTAGAAAAATAGCGTTCAGCTAGGAGCTTTTTTCAGTACTTTTGCTGATAGTGCA---T--
1 TACTGTAGAAAAAGAGTGTCCAGGTGGGAGCTTTTTTTAGTACTTTTGCTGACAGTGCATCCTGC
* * * *
32914833 TTGAAGCCTTTTTTACCCTATTTTATCAGAACCATCTTCTCAAAATTAGTTTTTCAGAAAC
66 TTGAAGCGTTTTTGACCCTATTTTTTCAGAACCATCTTCTCAAAATTA-TTTTTTAGAAAC
* * * * ** * *
32914894 TAGTGTAGAAAAATAGCGTTCAATTGGGAACTTTTTTCAGTACTTTTGCT
1 TACTGTAGAAAAAGAGTGTCCAGGTGGGAGCTTTTTTTAGTACTTTTGCT
32914944 AACTGAACAA
Statistics
Matches: 453, Mismatches: 55, Indels: 47
0.82 0.10 0.08
Matches are distributed among these distances:
107 35 0.08
108 1 0.00
109 1 0.00
112 53 0.12
113 3 0.01
119 2 0.00
120 1 0.00
121 48 0.11
122 18 0.04
123 109 0.24
124 87 0.19
125 75 0.17
126 20 0.04
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.39
Consensus pattern (125 bp):
TACTGTAGAAAAAGAGTGTCCAGGTGGGAGCTTTTTTTAGTACTTTTGCTGACAGTGCATCCTGC
TTGAAGCGTTTTTGACCCTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTTAGAAAC
Found at i:32914803 original size:112 final size:107
Alignment explanation
Indices: 32914650--32914877 Score: 278
Period size: 112 Copynumber: 2.1 Consensus size: 107
32914640 TCAAAATTAT
* * * * * * *
32914650 TTTTCAGAAACTACTGTAGAAAAAGAGTGTCTAGGTGGGAGCTTTTTTTAGTACTTTTGTTGACA
1 TTTTCAAAAACTACAGTAGAAAAAGAGCGTCTAGCTAGGAGCTTTTTTCAGTACTTTTGCTGACA
*
32914715 GTGCATCCTAATTGAAACATTTTTTACCCTATTTTTTCAGAACCATC
66 GTGCA---T--TTGAAACATTTTTTACCCTATTTTATCAGAACCATC
* *
32914762 TTTTCAAAAACTACAGTAGAAAAATAGCGT-TCAGCTAGGAGCTTTTTTCAGTACTTTTGCTGAT
1 TTTTCAAAAACTACAGTAGAAAAAGAGCGTCT-AGCTAGGAGCTTTTTTCAGTACTTTTGCTGAC
* *
32914826 AGTGCATTTGAAGCCTTTTTTACCCTATTTTATCAGAACCATC
65 AGTGCATTTGAAACATTTTTTACCCTATTTTATCAGAACCATC
*
32914869 TTCTCAAAA
1 TTTTCAAAA
32914878 TTAGTTTTTC
Statistics
Matches: 102, Mismatches: 13, Indels: 7
0.84 0.11 0.06
Matches are distributed among these distances:
107 41 0.40
109 1 0.01
111 1 0.01
112 59 0.58
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (107 bp):
TTTTCAAAAACTACAGTAGAAAAAGAGCGTCTAGCTAGGAGCTTTTTTCAGTACTTTTGCTGACA
GTGCATTTGAAACATTTTTTACCCTATTTTATCAGAACCATC
Found at i:32915063 original size:28 final size:29
Alignment explanation
Indices: 32915026--32915086 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 29
32915016 ACAAAAACCT
32915026 AAAA-CCCTAAACACAAATTTA-TTTTTA
1 AAAATCCCTAAACACAAATTTATTTTTTA
* *
32915053 AAAATCCCTAAACCCTAATTTATTTTTTA
1 AAAATCCCTAAACACAAATTTATTTTTTA
32915082 AAAAT
1 AAAAT
32915087 AATAAACCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 4 0.13
28 15 0.50
29 11 0.37
ACGTcount: A:0.46, C:0.18, G:0.00, T:0.36
Consensus pattern (29 bp):
AAAATCCCTAAACACAAATTTATTTTTTA
Found at i:32915092 original size:28 final size:28
Alignment explanation
Indices: 32915041--32915166 Score: 105
Period size: 33 Copynumber: 4.4 Consensus size: 28
32915031 CCTAAACACA
*
32915041 AATTTA-TTTTTAAAAATCCCTAAACCCT
1 AATTTATTTTTTAAAAAT-CATAAACCCT
* *
32915069 AATTTATTTTTTAAAAATAATAAACCTTAATTT
1 AATTTATTTTTTAAAAATCATAAACC-----CT
*
32915102 AATTTATTTTTTAAAAACCATAAACCCT
1 AATTTATTTTTTAAAAATCATAAACCCT
* * *
32915130 AATTTGTTTTTT--AAATCCCTAAACCTT
1 AATTTATTTTTTAAAAAT-CATAAACCCT
32915157 AATTTATTTT
1 AATTTATTTT
32915167 CTCCAAAACT
Statistics
Matches: 80, Mismatches: 11, Indels: 15
0.75 0.10 0.14
Matches are distributed among these distances:
26 3 0.04
27 17 0.21
28 24 0.30
29 11 0.14
33 25 0.31
ACGTcount: A:0.39, C:0.14, G:0.01, T:0.46
Consensus pattern (28 bp):
AATTTATTTTTTAAAAATCATAAACCCT
Found at i:32915110 original size:33 final size:33
Alignment explanation
Indices: 32915068--32915134 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
32915058 CCCTAAACCC
* *
32915068 TAATTTATTTTTTAAAAATAATAAACCTTAATT
1 TAATTTATTTTTTAAAAACAATAAACCCTAATT
*
32915101 TAATTTATTTTTTAAAAACCATAAACCCTAATT
1 TAATTTATTTTTTAAAAACAATAAACCCTAATT
32915134 T
1 T
32915135 GTTTTTTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.46
Consensus pattern (33 bp):
TAATTTATTTTTTAAAAACAATAAACCCTAATT
Found at i:32915152 original size:27 final size:28
Alignment explanation
Indices: 32915101--32915166 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 28
32915091 AACCTTAATT
32915101 TAATTTATTTTTTAAAAACCATAAACCC
1 TAATTTATTTTTTAAAAACCATAAACCC
* * * *
32915129 TAATTTGTTTTTT-AAATCCCTAAACCT
1 TAATTTATTTTTTAAAAACCATAAACCC
32915156 TAATTTATTTT
1 TAATTTATTTT
32915167 CTCCAAAACT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
27 21 0.64
28 12 0.36
ACGTcount: A:0.35, C:0.15, G:0.02, T:0.48
Consensus pattern (28 bp):
TAATTTATTTTTTAAAAACCATAAACCC
Found at i:32918275 original size:93 final size:94
Alignment explanation
Indices: 32918115--32918289 Score: 289
Period size: 93 Copynumber: 1.9 Consensus size: 94
32918105 AGATAAAAAG
*
32918115 AGGATTTGATATATTTCTTATCAGATAAGAAAATAGAATTTAATTATTATTTAAAAGAGTTTTAG
1 AGGATTTGATATATTTCTTATCAAATAAGAAAATAGAATTTAATTATTATTTAAAAGAGTTTTAG
*
32918180 ATAAATAATAATTAAAATTCAAAATCAAA
66 ATAAATAATAAATAAAATTCAAAATCAAA
* * * *
32918209 AGGATTTGATATATTTCTTATCAAATAAG-GAATATAATTTAGTTGTTATTTAAAAGAGTTTTAG
1 AGGATTTGATATATTTCTTATCAAATAAGAAAATAGAATTTAATTATTATTTAAAAGAGTTTTAG
32918273 ATAAATAATAAATAAAA
66 ATAAATAATAAATAAAA
32918290 CATAATTTAA
Statistics
Matches: 75, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
93 47 0.63
94 28 0.37
ACGTcount: A:0.47, C:0.03, G:0.11, T:0.38
Consensus pattern (94 bp):
AGGATTTGATATATTTCTTATCAAATAAGAAAATAGAATTTAATTATTATTTAAAAGAGTTTTAG
ATAAATAATAAATAAAATTCAAAATCAAA
Found at i:32918296 original size:49 final size:47
Alignment explanation
Indices: 32918242--32918372 Score: 147
Period size: 48 Copynumber: 2.7 Consensus size: 47
32918232 AATAAGGAAT
* * *
32918242 ATAATTTAGTTGTTATTTAAAAGAGTTTTAGATAAATA-ATAAATAAAAC
1 ATAATTTAATTATTATTTAAAAGAGTTTTA-A-AAAAAGATAAAT-AAAC
* * *
32918291 ATAATTTAATTATTATTTGAAAGAGTTTTAAAAAAAGATAACTAAAT
1 ATAATTTAATTATTATTTAAAAGAGTTTTAAAAAAAGATAAATAAAC
* *
32918338 AGAATTTAAATTATTATTTAAAAGAGTTTTTAAAA
1 ATAATTT-AATTATTATTTAAAAGAGTTTTAAAAA
32918373 TTCAAGATAA
Statistics
Matches: 71, Mismatches: 9, Indels: 5
0.84 0.11 0.06
Matches are distributed among these distances:
47 13 0.18
48 31 0.44
49 27 0.38
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.40
Consensus pattern (47 bp):
ATAATTTAATTATTATTTAAAAGAGTTTTAAAAAAAGATAAATAAAC
Found at i:32918452 original size:21 final size:21
Alignment explanation
Indices: 32918410--32918452 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
32918400 CAGATAAGGA
*
32918410 AAGAGATTTTAAATTATTTAT
1 AAGAGATTTTAAATTATATAT
32918431 AAGAG-TTTTAAATATATATAT
1 AAGAGATTTTAAAT-TATATAT
32918452 A
1 A
32918453 CAACCTCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (21 bp):
AAGAGATTTTAAATTATATAT
Found at i:32919310 original size:29 final size:29
Alignment explanation
Indices: 32919278--32919334 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
32919268 CATTTATTTT
*
32919278 AATGCATATATATGATA-CTATGAGTATGG
1 AATGCAT-TAGATGATATCTATGAGTATGG
* *
32919307 AATGCCTTAGATGATATCTATTAGTATG
1 AATGCATTAGATGATATCTATGAGTATG
32919335 TGATACTCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 8 0.33
29 16 0.67
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.37
Consensus pattern (29 bp):
AATGCATTAGATGATATCTATGAGTATGG
Found at i:32934985 original size:7 final size:7
Alignment explanation
Indices: 32934935--32934969 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
32934925 AGAAAATCAC
32934935 AAAAAAT
1 AAAAAAT
*
32934942 AAAGAAT
1 AAAAAAT
*
32934949 AAAGAAT
1 AAAAAAT
32934956 AAAAAAT
1 AAAAAAT
32934963 AAAAAAT
1 AAAAAAT
32934970 TAATTAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.80, C:0.00, G:0.06, T:0.14
Consensus pattern (7 bp):
AAAAAAT
Found at i:32934997 original size:18 final size:18
Alignment explanation
Indices: 32934953--32934998 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
32934943 AAGAATAAAG
*
32934953 AATAAAAAATAAAAAATT
1 AATAAAAAATAAAAAATA
*
32934971 AATTAAAAAT-AAAAATA
1 AATAAAAAATAAAAAATA
32934988 AATAACAAAAT
1 AATAA-AAAAT
32934999 TGCAACAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 10 0.42
18 14 0.58
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (18 bp):
AATAAAAAATAAAAAATA
Found at i:32935264 original size:16 final size:17
Alignment explanation
Indices: 32935238--32935270 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
32935228 AAATAACTTG
*
32935238 ATGCAAAATTATCCTAA
1 ATGCAAAATTAACCTAA
32935255 ATGC-AAATTAACCTAA
1 ATGCAAAATTAACCTAA
32935271 GTGTGATGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.48, C:0.18, G:0.06, T:0.27
Consensus pattern (17 bp):
ATGCAAAATTAACCTAA
Found at i:32938332 original size:50 final size:50
Alignment explanation
Indices: 32938208--32938456 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
32938198 GATAATAACA
* * ** * *
32938208 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
32938259 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
32938309 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
32938359 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
32938414 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
32938457 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:32938386 original size:100 final size:104
Alignment explanation
Indices: 32938207--32938456 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
32938197 TGATAATAAC
**
32938207 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
32938272 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
32938309 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
32938372 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
32938414 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
32938457 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:32938572 original size:13 final size:13
Alignment explanation
Indices: 32938551--32938582 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
32938541 GCTTGGATCA
*
32938551 TCATCAAATAAAT
1 TCATAAAATAAAT
32938564 TCATAAAATAAAT
1 TCATAAAATAAAT
32938577 TCATAA
1 TCATAA
32938583 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:32938829 original size:30 final size:30
Alignment explanation
Indices: 32938794--32938851 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
32938784 CCTCGACTCT
*
32938794 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
32938824 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
32938852 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:32945904 original size:50 final size:50
Alignment explanation
Indices: 32945780--32946028 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
32945770 GATAATAACA
* * ** * *
32945780 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
32945831 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
32945881 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
32945931 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
32945986 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
32946029 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:32945958 original size:100 final size:104
Alignment explanation
Indices: 32945779--32946028 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
32945769 TGATAATAAC
**
32945779 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
32945844 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
32945881 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
32945944 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
32945986 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
32946029 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:32946144 original size:13 final size:13
Alignment explanation
Indices: 32946123--32946154 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
32946113 GCTTGGATCA
*
32946123 TCATCAAATAAAT
1 TCATAAAATAAAT
32946136 TCATAAAATAAAT
1 TCATAAAATAAAT
32946149 TCATAA
1 TCATAA
32946155 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:32946401 original size:30 final size:30
Alignment explanation
Indices: 32946366--32946423 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
32946356 CCTCGACTCT
*
32946366 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
32946396 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
32946424 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:32951487 original size:16 final size:17
Alignment explanation
Indices: 32951466--32951499 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
32951456 ATTTACATAA
32951466 TAAAAAAA-ATTCAAAT
1 TAAAAAAATATTCAAAT
*
32951482 TAAAAAAATATTTAAAT
1 TAAAAAAATATTCAAAT
32951499 T
1 T
32951500 TAACATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (17 bp):
TAAAAAAATATTCAAAT
Found at i:32957845 original size:12 final size:12
Alignment explanation
Indices: 32957828--32957860 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
32957818 ATTAGAATAG
32957828 TAAAGAAGAAAA
1 TAAAGAAGAAAA
32957840 TAAAGAAGAAAA
1 TAAAGAAGAAAA
*
32957852 CAAAGAAGA
1 TAAAGAAGA
32957861 TAGATGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.73, C:0.03, G:0.18, T:0.06
Consensus pattern (12 bp):
TAAAGAAGAAAA
Found at i:32959247 original size:43 final size:43
Alignment explanation
Indices: 32959199--32959285 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
32959189 ATCAAATGTG
32959199 TAAGATTTTGTAATAAACCTATTGAATGCAACAAAAGTACACT
1 TAAGATTTTGTAATAAACCTATTGAATGCAACAAAAGTACACT
32959242 TAAGATTTTGTAATAAACCTATTGAATGCAACAAAAGTACACT
1 TAAGATTTTGTAATAAACCTATTGAATGCAACAAAAGTACACT
32959285 T
1 T
32959286 TACAAACCTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.44, C:0.14, G:0.11, T:0.31
Consensus pattern (43 bp):
TAAGATTTTGTAATAAACCTATTGAATGCAACAAAAGTACACT
Found at i:32959301 original size:43 final size:42
Alignment explanation
Indices: 32959210--32959302 Score: 116
Period size: 43 Copynumber: 2.2 Consensus size: 42
32959200 AAGATTTTGT
* ** *
32959210 AATAAACCTATTGAATGCAACAAAAGTACACTTAAGATTTTG
1 AATAAACCTATTGAATGCAACAAAAGTACACTTAAAACCTAG
32959252 TAATAAACCTATTGAATGCAACAAAAGTACACTTTACAAACCTAG
1 -AATAAACCTATTGAATGCAACAAAAGTACAC-TTA-AAACCTAG
32959297 -ATAAAC
1 AATAAAC
32959303 ACATAAAATC
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
43 37 0.84
44 3 0.07
45 4 0.09
ACGTcount: A:0.47, C:0.17, G:0.10, T:0.26
Consensus pattern (42 bp):
AATAAACCTATTGAATGCAACAAAAGTACACTTAAAACCTAG
Found at i:32959562 original size:51 final size:51
Alignment explanation
Indices: 32959491--32959594 Score: 208
Period size: 51 Copynumber: 2.0 Consensus size: 51
32959481 TTAAATGTTC
32959491 AACTTACCTCTCTCCTACAAGTAAAATCTTCTATCAATGGTAGAGTAATGT
1 AACTTACCTCTCTCCTACAAGTAAAATCTTCTATCAATGGTAGAGTAATGT
32959542 AACTTACCTCTCTCCTACAAGTAAAATCTTCTATCAATGGTAGAGTAATGT
1 AACTTACCTCTCTCCTACAAGTAAAATCTTCTATCAATGGTAGAGTAATGT
32959593 AA
1 AA
32959595 TTGGAAGCTC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.33
Consensus pattern (51 bp):
AACTTACCTCTCTCCTACAAGTAAAATCTTCTATCAATGGTAGAGTAATGT
Found at i:32962310 original size:45 final size:45
Alignment explanation
Indices: 32962246--32962478 Score: 394
Period size: 45 Copynumber: 5.2 Consensus size: 45
32962236 CATGAAATTA
*
32962246 AGGAAGCATTTGACCAACATCATGCATAATTCATGGGAGAATTTG
1 AGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAATTTG
*
32962291 AGGAAGCATTTGACCAACATCATGCATAATTCATGGAAAAATTTG
1 AGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAATTTG
*
32962336 AGGAGGCATTTGACCAACATCATGCATAATTCATGGAAGAATTTG
1 AGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAATTTG
*
32962381 AGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAATTTA
1 AGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAATTTG
* * * *
32962426 AGGAAGCATTTGGCCAACATCATGCATAATTTATGGAACAAATTG
1 AGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAATTTG
32962471 AGGAAGCA
1 AGGAAGCA
32962479 CCATGGCCGA
Statistics
Matches: 177, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 177 1.00
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (45 bp):
AGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAATTTG
Found at i:32963362 original size:68 final size:68
Alignment explanation
Indices: 32963253--32963388 Score: 272
Period size: 68 Copynumber: 2.0 Consensus size: 68
32963243 TCGATTATCT
32963253 ATAAAACATGGGAAATGAGACTATGTAAGCATAAAATGCTTAGTAAGTTCTTATAACATAAAACA
1 ATAAAACATGGGAAATGAGACTATGTAAGCATAAAATGCTTAGTAAGTTCTTATAACATAAAACA
32963318 CAA
66 CAA
32963321 ATAAAACATGGGAAATGAGACTATGTAAGCATAAAATGCTTAGTAAGTTCTTATAACATAAAACA
1 ATAAAACATGGGAAATGAGACTATGTAAGCATAAAATGCTTAGTAAGTTCTTATAACATAAAACA
32963386 CAA
66 CAA
32963389 CTTACCATTT
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 68 1.00
ACGTcount: A:0.49, C:0.12, G:0.15, T:0.25
Consensus pattern (68 bp):
ATAAAACATGGGAAATGAGACTATGTAAGCATAAAATGCTTAGTAAGTTCTTATAACATAAAACA
CAA
Found at i:32963797 original size:26 final size:26
Alignment explanation
Indices: 32963759--32963827 Score: 86
Period size: 26 Copynumber: 2.7 Consensus size: 26
32963749 CTTACATTGT
* *
32963759 TGCTCACACGAGCTGTGAAATG-GATC
1 TGCTCACATGAGCTGTGAAATGTG-CC
*
32963785 TGCTCACATGAGCTGTAAAATGTGCC
1 TGCTCACATGAGCTGTGAAATGTGCC
*
32963811 TGCTCACATGAGGTGTG
1 TGCTCACATGAGCTGTG
32963828 GGTCGGGATA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 36 0.97
27 1 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (26 bp):
TGCTCACATGAGCTGTGAAATGTGCC
Found at i:32964798 original size:13 final size:13
Alignment explanation
Indices: 32964782--32964815 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
32964772 ATTTATAATT
32964782 TTAACCTTATTAA
1 TTAACCTTATTAA
32964795 TTAACCTTATTAA
1 TTAACCTTATTAA
32964808 TTAACCTT
1 TTAACCTT
32964816 TGAAAACACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.35, C:0.18, G:0.00, T:0.47
Consensus pattern (13 bp):
TTAACCTTATTAA
Found at i:32965231 original size:5 final size:5
Alignment explanation
Indices: 32965217--32965259 Score: 79
Period size: 5 Copynumber: 8.8 Consensus size: 5
32965207 GAAATCATAA
32965217 ATAT- ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATAT
1 ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATAT
32965260 ATGCTATGAG
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.11
5 34 0.89
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (5 bp):
ATATG
Found at i:32965267 original size:12 final size:12
Alignment explanation
Indices: 32965219--32965268 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 12
32965209 AATCATAAAT
32965219 ATATATGATATG
1 ATATATGATATG
32965231 --ATATGATATG
1 ATATATGATATG
32965241 ATATGATATGATATG
1 --AT-ATATGATATG
*
32965256 ATATATGCTATG
1 ATATATGATATG
32965268 A
1 A
32965269 GCCTATGTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 10
0.74 0.02 0.23
Matches are distributed among these distances:
10 10 0.31
12 10 0.31
13 2 0.06
15 10 0.31
ACGTcount: A:0.40, C:0.02, G:0.18, T:0.40
Consensus pattern (12 bp):
ATATATGATATG
Found at i:32971768 original size:18 final size:18
Alignment explanation
Indices: 32971745--32971780 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
32971735 TTTAAATGTC
32971745 ATTAATTT-TAGAAAAGGG
1 ATTAATTTGTA-AAAAGGG
32971763 ATTAATTTGTAAAAAGGG
1 ATTAATTTGTAAAAAGGG
32971781 TCAAATTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.88
19 2 0.12
ACGTcount: A:0.44, C:0.00, G:0.22, T:0.33
Consensus pattern (18 bp):
ATTAATTTGTAAAAAGGG
Found at i:32978777 original size:16 final size:14
Alignment explanation
Indices: 32978765--32978801 Score: 58
Period size: 13 Copynumber: 2.6 Consensus size: 14
32978755 AAAGAAAATT
32978765 AAAAAAGAAG-AAA
1 AAAAAAGAAGAAAA
32978778 AAAAAAGAAGAAAA
1 AAAAAAGAAGAAAA
32978792 AAAGAAAGAA
1 AAA-AAAGAA
32978802 ATTGAAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 10 0.45
14 6 0.27
15 6 0.27
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (14 bp):
AAAAAAGAAGAAAA
Found at i:32978869 original size:21 final size:21
Alignment explanation
Indices: 32978845--32978884 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
32978835 GAAAGTATGC
* *
32978845 AAGAAACGAGTGTTGTTGAAA
1 AAGAAACGAGAGTAGTTGAAA
32978866 AAGAAACGAGAGTAGTTGA
1 AAGAAACGAGAGTAGTTGA
32978885 GTTTTCTATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.45, C:0.05, G:0.30, T:0.20
Consensus pattern (21 bp):
AAGAAACGAGAGTAGTTGAAA
Found at i:32980709 original size:22 final size:21
Alignment explanation
Indices: 32980684--32980725 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
32980674 TTAAATAAAT
*
32980684 TTTAGTTAATTTAGTATAAGTA
1 TTTAATTAATTTAGT-TAAGTA
32980706 TTTAATTAATTTAGTTAAGT
1 TTTAATTAATTTAGTTAAGT
32980726 GTTAAATATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (21 bp):
TTTAATTAATTTAGTTAAGTA
Found at i:32999047 original size:21 final size:21
Alignment explanation
Indices: 32999023--32999077 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
32999013 CCCCTTTATT
32999023 AACATAAAAATTTAAATTTTA
1 AACATAAAAATTTAAATTTTA
*
32999044 AACA-AAACAAATTAAATTTTA
1 AACATAAA-AATTTAAATTTTA
32999065 AA-AT-AAAATTTAA
1 AACATAAAAATTTAA
32999078 GTCTTAATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
19 6 0.20
20 6 0.20
21 18 0.60
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (21 bp):
AACATAAAAATTTAAATTTTA
Found at i:33008968 original size:84 final size:84
Alignment explanation
Indices: 33008868--33009078 Score: 350
Period size: 84 Copynumber: 2.5 Consensus size: 84
33008858 TAAAGGATCC
* * *
33008868 CGGTGGAATCAACACTTAGCAACCACCTTATAATTAATGATACGGGGAATCAGCCCATAACAACC
1 CGGTGGAATCAGCACTTAGCAACCACCTTATAATTAATGATACGAGGAATCAGCACATAACAACC
*
33008933 CCTTTCACAATCAATGATA
66 CCTTTCACAATCAAGGATA
* * *
33008952 CGGTGGAATCAGCACTTAGCAACCATCTTATAATCAATGATACGAGGAATCAGCACATAGCAACC
1 CGGTGGAATCAGCACTTAGCAACCACCTTATAATTAATGATACGAGGAATCAGCACATAACAACC
33009017 CCTTTCACAATCAAGGATA
66 CCTTTCACAATCAAGGATA
*
33009036 TGGTGGAATCAGCACTTAGCAACCACCTTATAATTAATGATAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTATAATTAATGATAC
33009079 CGGTTCACAT
Statistics
Matches: 117, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
84 117 1.00
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.23
Consensus pattern (84 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTATAATTAATGATACGAGGAATCAGCACATAACAACC
CCTTTCACAATCAAGGATA
Found at i:33008987 original size:42 final size:42
Alignment explanation
Indices: 33008826--33009078 Score: 244
Period size: 42 Copynumber: 6.0 Consensus size: 42
33008816 TCGTTACACA
* * ** * * *
33008826 GTGGAATCAGTACTTAGCAACCACCTCATGTTTAAAGGATCCCG
1 GTGGAATCAGCACTTAGCAACCACCTTAT-AATCAATGAT-ACG
* *
33008870 GTGGAATCAACACTTAGCAACCACCTTATAATTAATGATACG
1 GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACG
* * * *
33008912 G-GGAATCAGCCCATAACAACC-CCTTTCACAATCAATGATACG
1 GTGGAATCAGCACTTAGCAACCACC-TT-ATAATCAATGATACG
*
33008954 GTGGAATCAGCACTTAGCAACCATCTTATAATCAATGATAC-
1 GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACG
* * * * *
33008995 GAGGAATCAGCACATAGCAACC-CCTTTCACAATCAAGGATATG
1 GTGGAATCAGCACTTAGCAACCACC-TT-ATAATCAATGATACG
*
33009038 GTGGAATCAGCACTTAGCAACCACCTTATAATTAATGATAC
1 GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATAC
33009079 CGGTTCACAT
Statistics
Matches: 170, Mismatches: 31, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
40 3 0.02
41 40 0.24
42 51 0.30
43 47 0.28
44 29 0.17
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.24
Consensus pattern (42 bp):
GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACG
Found at i:33009209 original size:50 final size:50
Alignment explanation
Indices: 33009078--33009224 Score: 165
Period size: 49 Copynumber: 2.9 Consensus size: 50
33009068 ATTAATGATA
* * * * *
33009078 CCGGTTCACATAGTAGCCTACACATAGTACTACACATGTGATCGAGGC-TAT
1 CCGGTACACATAATAGCCTGCACATAGTACTACACATGTGA-CCA-TCATAT
* *
33009129 CCGGTACGCATAACAGCCTGCACATA-TACTACACATGTGACCCATCAT-T
1 CCGGTACACATAATAGCCTGCACATAGTACTACACATGTGA-CCATCATAT
* *
33009178 CCGGTACACGTAATAGCCTGCACATAGTACTACACACGTGACCATCA
1 CCGGTACACATAATAGCCTGCACATAGTACTACACATGTGACCATCA
33009225 CTTTCACTTT
Statistics
Matches: 82, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
49 31 0.38
50 30 0.37
51 21 0.26
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (50 bp):
CCGGTACACATAATAGCCTGCACATAGTACTACACATGTGACCATCATAT
Found at i:33010510 original size:25 final size:25
Alignment explanation
Indices: 33010471--33010562 Score: 84
Period size: 25 Copynumber: 3.7 Consensus size: 25
33010461 TCATGTACAT
33010471 GTATGCTCA-TACGAGCTATGAATCG
1 GTATGCTCACT-CGAGCTATGAATCG
33010496 GTATGCTCACTCGAG-T-TGTAGATCG
1 GTATGCTCACTCGAGCTATG-A-ATCG
* * *
33010521 GTATGCTCTCAT-GAGCTATAAATCA
1 GTATGCTCAC-TCGAGCTATGAATCG
*
33010546 GTATGCTCACACGAGCT
1 GTATGCTCACTCGAGCT
33010563 GTAGGTCAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
23 2 0.04
24 2 0.04
25 46 0.84
26 4 0.07
27 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (25 bp):
GTATGCTCACTCGAGCTATGAATCG
Found at i:33017291 original size:25 final size:24
Alignment explanation
Indices: 33017242--33017292 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
33017232 CAACTCATTT
* *
33017242 GAGCTTACCAATTTGAGCTCGTGA
1 GAGCTTACCAATTTCAGCTCATGA
*
33017266 GAGCTTACCGATTTACAGCTCATGA
1 GAGCTTACCAATTT-CAGCTCATGA
33017291 GA
1 GA
33017293 TCATATCGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 13 0.57
25 10 0.43
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (24 bp):
GAGCTTACCAATTTCAGCTCATGA
Found at i:33034254 original size:25 final size:25
Alignment explanation
Indices: 33034220--33034287 Score: 127
Period size: 25 Copynumber: 2.7 Consensus size: 25
33034210 TTTACATCGT
33034220 TGCTCACACGAGCTGTGAATGGGCC
1 TGCTCACACGAGCTGTGAATGGGCC
*
33034245 TGCTCACACGAACTGTGAATGGGCC
1 TGCTCACACGAGCTGTGAATGGGCC
33034270 TGCTCACACGAGCTGTGA
1 TGCTCACACGAGCTGTGA
33034288 GTTAGAATGT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (25 bp):
TGCTCACACGAGCTGTGAATGGGCC
Found at i:33040331 original size:19 final size:19
Alignment explanation
Indices: 33040308--33040354 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
33040298 TTTTCGACCC
*
33040308 AAATTAATTATTTCAC-TTA
1 AAATTAATTAATT-ACTTTA
* *
33040327 TAATTATTTAATTACTTTA
1 AAATTAATTAATTACTTTA
33040346 AAATTAATT
1 AAATTAATT
33040355 TTCCAAAAAT
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
18 2 0.09
19 20 0.91
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (19 bp):
AAATTAATTAATTACTTTA
Found at i:33041171 original size:31 final size:31
Alignment explanation
Indices: 33041133--33041196 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
33041123 GTACTCAAAG
33041133 CAGAGTTGAAAAACTCATCAAAGGGAAATTC
1 CAGAGTTGAAAAACTCATCAAAGGGAAATTC
*
33041164 CAGAGTTGAAAAATTCATCAAAGGGAAATTC
1 CAGAGTTGAAAAACTCATCAAAGGGAAATTC
33041195 CA
1 CA
33041197 TGTAAGTGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.45, C:0.16, G:0.19, T:0.20
Consensus pattern (31 bp):
CAGAGTTGAAAAACTCATCAAAGGGAAATTC
Found at i:33048551 original size:56 final size:56
Alignment explanation
Indices: 33048460--33048569 Score: 193
Period size: 56 Copynumber: 2.0 Consensus size: 56
33048450 TTACACATTT
* *
33048460 TGATCCCATGTTTACTATCCTGGCAGACTTTATATGTTGCCATAGCCCAGCTATTA
1 TGATCCCATGTTTACTACCCTGGCAGACTTCATATGTTGCCATAGCCCAGCTATTA
*
33048516 TGATCCTATGTTTACTACCCTGGCAGACTTCATATGTTGCCATAGCCCAGCTAT
1 TGATCCCATGTTTACTACCCTGGCAGACTTCATATGTTGCCATAGCCCAGCTAT
33048570 GGTCTTACAC
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 51 1.00
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.35
Consensus pattern (56 bp):
TGATCCCATGTTTACTACCCTGGCAGACTTCATATGTTGCCATAGCCCAGCTATTA
Found at i:33049442 original size:42 final size:42
Alignment explanation
Indices: 33049396--33049476 Score: 117
Period size: 42 Copynumber: 1.9 Consensus size: 42
33049386 TGTGCTCACC
* * *
33049396 CGTGTAACTCACTGAGTTGCCCCACATGCCTGTGTGCCAAGT
1 CGTGTAACTCACTGAGTTGACACACATGCCCGTGTGCCAAGT
**
33049438 CGTGTAACTCTTTGAGTTGACACACATGCCCGTGTGCCA
1 CGTGTAACTCACTGAGTTGACACACATGCCCGTGTGCCA
33049477 GGCAATGTGC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.27
Consensus pattern (42 bp):
CGTGTAACTCACTGAGTTGACACACATGCCCGTGTGCCAAGT
Found at i:33050469 original size:40 final size:40
Alignment explanation
Indices: 33050168--33050457 Score: 359
Period size: 40 Copynumber: 7.3 Consensus size: 40
33050158 ATACTATTTG
* * * *
33050168 ATTCAGGGTTACCAAAGTGCAAAT-GGGGCAAGTATGTGC
1 ATTCAGGGGTACCGAAGTACAAATAGGGGCACGTATGTGC
33050207 ATTCAGGGGTACCGAAGTACAAATAGGGGCACGTATGTGC
1 ATTCAGGGGTACCGAAGTACAAATAGGGGCACGTATGTGC
* * * * * * *
33050247 ATTCAAGGGTAACTAAGTACAAACAGGGGAATGTATATGC
1 ATTCAGGGGTACCGAAGTACAAATAGGGGCACGTATGTGC
* * * *
33050287 ATTTAAGGGTACCGAACTACAAATAGGGGCACATATGCT-C
1 ATTCAGGGGTACCGAAGTACAAATAGGGGCACGTATG-TGC
*
33050327 ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
1 ATTCAGGGGTACCGAAGTACAAATAGGGGCACGTATGTGC
* ** *
33050367 ATTTAAAGGTACCAAAGTACAAATAGGGGCACGTATGTGC
1 ATTCAGGGGTACCGAAGTACAAATAGGGGCACGTATGTGC
* *
33050407 ATTCAGGGGTACCAAAGTATAAATAGGGGCACGTATGTGC
1 ATTCAGGGGTACCGAAGTACAAATAGGGGCACGTATGTGC
33050447 ATTCAGGGGTA
1 ATTCAGGGGTA
33050458 ATTATCTATA
Statistics
Matches: 214, Mismatches: 34, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
39 22 0.10
40 191 0.89
41 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (40 bp):
ATTCAGGGGTACCGAAGTACAAATAGGGGCACGTATGTGC
Found at i:33050471 original size:120 final size:120
Alignment explanation
Indices: 33050168--33050457 Score: 395
Period size: 120 Copynumber: 2.4 Consensus size: 120
33050158 ATACTATTTG
* * * *
33050168 ATTCAGGGTTACCAAAGTGCAAAT-GGGGCAAGTATGTGCATTCAGGGGTACCGAAGTACAAATA
1 ATTCAGGGGTACCAAAGTACAAATAGGGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAACA
* * *
33050232 GGGGCACGTATGTGCATTCAAGGGTAACTAAGTACAAACAGGGGAATGTATATGC
66 GGGGCACGTATGTGCATTCAAAGGTAACAAAGTACAAACAGGGGAACGTATATGC
* * * * *
33050287 ATTTAAGGGTACCGAACTACAAATAGGGGCACATATGCT-CATTCAGGGGTACCGAAGTACAAAC
1 ATTCAGGGGTACCAAAGTACAAATAGGGGCACGTATG-TGCATTCAGGGGTACCGAAGTACAAAC
* * * * *
33050351 AGGGGCACGTATGTGCATTTAAAGGTACCAAAGTACAAATAGGGGCACGTATGTGC
65 AGGGGCACGTATGTGCATTCAAAGGTAACAAAGTACAAACAGGGGAACGTATATGC
*
33050407 ATTCAGGGGTACCAAAGTATAAATAGGGGCACGTATGTGCATTCAGGGGTA
1 ATTCAGGGGTACCAAAGTACAAATAGGGGCACGTATGTGCATTCAGGGGTA
33050458 ATTATCTATA
Statistics
Matches: 145, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
119 19 0.13
120 125 0.86
121 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (120 bp):
ATTCAGGGGTACCAAAGTACAAATAGGGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAACA
GGGGCACGTATGTGCATTCAAAGGTAACAAAGTACAAACAGGGGAACGTATATGC
Found at i:33052602 original size:25 final size:25
Alignment explanation
Indices: 33052521--33052604 Score: 84
Period size: 25 Copynumber: 3.4 Consensus size: 25
33052511 CAAAACAAAT
* *
33052521 AATAAAAAT--TTTCAAATAAACAA
1 AATAAAAATAATTTAAAATAAATAA
* * *
33052544 AATAAAAAAAACTTAAAATAACTAA
1 AATAAAAATAATTTAAAATAAATAA
33052569 CAAT-AAAATAATTTAAAATAAATAA
1 -AATAAAAATAATTTAAAATAAATAA
*
33052594 TATAAAAATAA
1 AATAAAAATAA
33052605 CATATAAAAC
Statistics
Matches: 48, Mismatches: 9, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
23 8 0.17
24 2 0.04
25 35 0.73
26 3 0.06
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.25
Consensus pattern (25 bp):
AATAAAAATAATTTAAAATAAATAA
Found at i:33052746 original size:26 final size:26
Alignment explanation
Indices: 33052649--33052748 Score: 114
Period size: 26 Copynumber: 3.8 Consensus size: 26
33052639 AATTTGAAAG
* * *
33052649 ATATATATAATAGTTTACAATAAATA
1 ATATATATAAAAATTTAAAATAAATA
*
33052675 ATATATAAAAGAAATTT-AAATAAATA
1 ATATATATAA-AAATTTAAAATAAATA
* *
33052701 ATATGTA-AAACAACTTAAAATAAATA
1 ATATATATAAA-AATTTAAAATAAATA
33052727 ATATATATAAAAATTTAAAATA
1 ATATATATAAAAATTTAAAATA
33052749 GAGGATGATA
Statistics
Matches: 62, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
24 1 0.02
25 6 0.10
26 48 0.77
27 7 0.11
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (26 bp):
ATATATATAAAAATTTAAAATAAATA
Found at i:33056184 original size:27 final size:27
Alignment explanation
Indices: 33056145--33056216 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
33056135 TATAGAGGAA
33056145 ATACTG-TACTGGTGGCTCT-GCCACA-
1 ATACTGTTACTGGTGGCT-TGGCCACAT
33056170 ATCACTGTTACTGGTGGCTTGGCCACAT
1 AT-ACTGTTACTGGTGGCTTGGCCACAT
* *
33056198 ATACTATTACTGGTAGCTT
1 ATACTGTTACTGGTGGCTT
33056217 TGCTGCGATA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
25 2 0.05
26 5 0.12
27 32 0.78
28 2 0.05
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.33
Consensus pattern (27 bp):
ATACTGTTACTGGTGGCTTGGCCACAT
Found at i:33056304 original size:32 final size:32
Alignment explanation
Indices: 33056254--33056330 Score: 118
Period size: 32 Copynumber: 2.4 Consensus size: 32
33056244 ACTGCGATGC
* *
33056254 TACTGATGGCTTTATGCCGGTCATAGTACCGT
1 TACTGATGGCTTTATGCCGATCATAGTACCAT
* *
33056286 TACTAATGGCTTTTTGCCGATCATAGTACCAT
1 TACTGATGGCTTTATGCCGATCATAGTACCAT
33056318 TACTGATGGCTTT
1 TACTGATGGCTTT
33056331 GTATCGACCA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (32 bp):
TACTGATGGCTTTATGCCGATCATAGTACCAT
Found at i:33056484 original size:32 final size:32
Alignment explanation
Indices: 33056380--33056497 Score: 148
Period size: 32 Copynumber: 3.7 Consensus size: 32
33056370 ATTTCACCAT
*
33056380 TACTGATGGTTGTGTGCCGATCATGTCACTGC
1 TACTGATGGCTGTGTGCCGATCATGTCACTGC
* * * * *
33056412 TACTGATGGCT-TGTACCGGTCATGTTACCGT
1 TACTGATGGCTGTGTGCCGATCATGTCACTGC
*
33056443 TACTGATGGCTGTGTGCCGATCATATCACTGC
1 TACTGATGGCTGTGTGCCGATCATGTCACTGC
* *
33056475 TACTGATGGCTTTGTGCCAATCA
1 TACTGATGGCTGTGTGCCGATCA
33056498 AATTACTATA
Statistics
Matches: 71, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
31 26 0.37
32 45 0.63
ACGTcount: A:0.18, C:0.23, G:0.25, T:0.34
Consensus pattern (32 bp):
TACTGATGGCTGTGTGCCGATCATGTCACTGC
Found at i:33056516 original size:63 final size:63
Alignment explanation
Indices: 33056379--33056503 Score: 178
Period size: 63 Copynumber: 2.0 Consensus size: 63
33056369 TATTTCACCA
* * ** **
33056379 TTACTGATGGTTGTGTGCCGATCATGTCACTGCTACTGATGGCTTGTACCGGTCATGTTACCG
1 TTACTGATGGCTGTGTGCCGATCATATCACTGCTACTGATGGCTTGTACCAATCAAATTACCG
*
33056442 TTACTGATGGCTGTGTGCCGATCATATCACTGCTACTGATGGCTTTGTGCCAATCAAATTAC
1 TTACTGATGGCTGTGTGCCGATCATATCACTGCTACTGATGGC-TTGTACCAATCAAATTAC
33056504 TATACTTATG
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
63 41 0.76
64 13 0.24
ACGTcount: A:0.19, C:0.22, G:0.24, T:0.34
Consensus pattern (63 bp):
TTACTGATGGCTGTGTGCCGATCATATCACTGCTACTGATGGCTTGTACCAATCAAATTACCG
Found at i:33056517 original size:31 final size:32
Alignment explanation
Indices: 33056443--33056517 Score: 89
Period size: 32 Copynumber: 2.4 Consensus size: 32
33056433 ATGTTACCGT
* * * *
33056443 TACTGATGGCTGTGTGCCGATCATATCACTGC
1 TACTGATGGCTTTGTGCCAATCAAATCACTGA
*
33056475 TACTGATGGCTTTGTGCCAATCAAATTACT-A
1 TACTGATGGCTTTGTGCCAATCAAATCACTGA
*
33056506 TACTTATGGCTT
1 TACTGATGGCTT
33056518 GTAGCCATTC
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
31 11 0.30
32 26 0.70
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCAATCAAATCACTGA
Found at i:33057557 original size:40 final size:40
Alignment explanation
Indices: 33057511--33057646 Score: 150
Period size: 40 Copynumber: 3.4 Consensus size: 40
33057501 TGTTATACTC
*
33057511 TCTGTCTAGTGTGTTCCGATTGGATTAGCTCTTATAAGCT
1 TCTGTCTAGTGTGTTCCGATTGGATTAGCTCTTATGAGCT
* *
33057551 TCTGTCTAGCT-TGTTTC-AGTTGGATTAGCTTTTATGAGCT
1 TCTGTCTAG-TGTGTTCCGA-TTGGATTAGCTCTTATGAGCT
* * * * *
33057591 TTTGTTTAGCGTGTTTCGGTTGGATTAGCTCTTATGAGCT
1 TCTGTCTAGTGTGTTCCGATTGGATTAGCTCTTATGAGCT
* *
33057631 TCTATCTGGTGTGTTC
1 TCTGTCTAGTGTGTTC
33057647 GGTTGGTCTG
Statistics
Matches: 78, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
39 1 0.01
40 76 0.97
41 1 0.01
ACGTcount: A:0.14, C:0.15, G:0.24, T:0.46
Consensus pattern (40 bp):
TCTGTCTAGTGTGTTCCGATTGGATTAGCTCTTATGAGCT
Found at i:33073731 original size:30 final size:29
Alignment explanation
Indices: 33073678--33073795 Score: 110
Period size: 29 Copynumber: 4.0 Consensus size: 29
33073668 CAGTGCTAAA
*** * *
33073678 CGATGGTCGAAACCATTTGTTTTCTTTAAT
1 CGATGGTCGAAACCATCCCTTTTC-ATATT
*
33073708 CGATGGTTGAAACCATCCCTTTTCATATT
1 CGATGGTCGAAACCATCCCTTTTCATATT
* * *
33073737 TGATGATCGAAGCCATCCCTTTTCATATT
1 CGATGGTCGAAACCATCCCTTTTCATATT
* ** *
33073766 CGATGGTTGTCACCATCCCTTTTCTTATT
1 CGATGGTCGAAACCATCCCTTTTCATATT
33073795 C
1 C
33073796 AATGAGCGTC
Statistics
Matches: 71, Mismatches: 17, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
29 51 0.72
30 20 0.28
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (29 bp):
CGATGGTCGAAACCATCCCTTTTCATATT
Found at i:33074667 original size:24 final size:24
Alignment explanation
Indices: 33074602--33074667 Score: 87
Period size: 24 Copynumber: 2.8 Consensus size: 24
33074592 GTTATCTATG
*
33074602 ATGCCTTTGTGGTGTATCTGATAA
1 ATGCCTTTGTGGTGTATTTGATAA
** *
33074626 ATGCCTTTGTGGCATATTTGGTAA
1 ATGCCTTTGTGGTGTATTTGATAA
*
33074650 ATGTCTTTGTGGTGTATT
1 ATGCCTTTGTGGTGTATT
33074668 CTATGTTGCC
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.18, C:0.11, G:0.26, T:0.45
Consensus pattern (24 bp):
ATGCCTTTGTGGTGTATTTGATAA
Found at i:33080682 original size:90 final size:90
Alignment explanation
Indices: 33080563--33080803 Score: 237
Period size: 85 Copynumber: 2.7 Consensus size: 90
33080553 GTGTAAAAAG
** * **
33080563 CCCTCAAAC-TTTAAAAAGAAAAACAATTAAGCTCCAACTTTTTTTTTGGCACTCAATCAGGTAC
1 CCCTCAAACTTTTTCAAA-AAAAGCAATTAAGCTCCAACTTTTTTTTT-GCACTCAATTGGGTAC
** ** *
33080627 TTGAGTTTTCAAAATGCATCTAAAAGGT
64 TTGAACTGCCAAAATGCAT-TAAAACGT
** * * *
33080655 -CCTCAATTTTTTTC-AAAAAAGCAATTAATC-CCCAC-TTTTTTTT--ACTTAATTGGGTACTT
1 CCCTCAAACTTTTTCAAAAAAAGCAATTAAGCTCCAACTTTTTTTTTGCACTCAATTGGGTACTT
33080714 GAACTGCCAAAATGCATTAAAACGT
66 GAACTGCCAAAATGCATTAAAACGT
**
33080739 CCCTCAAACTTTTTCAAAAAAAGCAATTAAG-TCCCTTCTTTTTTTTTGCACTCAATTGGGTACT
1 CCCTCAAACTTTTTCAAAAAAAGCAATTAAGCT-CCAACTTTTTTTTTGCACTCAATTGGGTACT
33080803 T
65 T
33080804 TAACAATTGA
Statistics
Matches: 120, Mismatches: 21, Indels: 18
0.75 0.13 0.11
Matches are distributed among these distances:
84 7 0.06
85 38 0.32
86 14 0.12
87 3 0.03
88 16 0.13
89 4 0.03
90 27 0.22
91 8 0.07
92 3 0.03
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (90 bp):
CCCTCAAACTTTTTCAAAAAAAGCAATTAAGCTCCAACTTTTTTTTTGCACTCAATTGGGTACTT
GAACTGCCAAAATGCATTAAAACGT
Found at i:33080909 original size:15 final size:15
Alignment explanation
Indices: 33080889--33080918 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
33080879 ACATGCGAAA
33080889 AAAAATATAAAAAAT
1 AAAAATATAAAAAAT
33080904 AAAAATATAAAAAAT
1 AAAAATATAAAAAAT
33080919 TATTAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (15 bp):
AAAAATATAAAAAAT
Found at i:33080970 original size:27 final size:27
Alignment explanation
Indices: 33080901--33081046 Score: 90
Period size: 27 Copynumber: 5.3 Consensus size: 27
33080891 AAATATAAAA
33080901 AATAAAAATATAAAAAATTATTAAATTTC
1 AATAAAAATAT--AAAATTATTAAATTTC
*
33080930 AATAAAAATATAAAATTATTTAAATTTT
1 AATAAAAATATAAAATTA-TTAAATTTC
* * *
33080958 ATTAGAAAT-TAAAATATATATATAA-ATC
1 AATAAAAATATAAAAT-TAT-TA-AATTTC
*
33080986 -ATAAAAATATAAAAAATT-GTAAATTT-
1 AATAAAAATAT--AAAATTATTAAATTTC
* *
33081012 TATAAAAATAATAAAAATTA-TAAATTGC
1 AATAAAAAT-AT-AAAATTATTAAATTTC
33081040 -ATAAAAA
1 AATAAAAA
33081047 AGCTCTTTAA
Statistics
Matches: 95, Mismatches: 10, Indels: 26
0.73 0.08 0.20
Matches are distributed among these distances:
26 2 0.02
27 51 0.54
28 23 0.24
29 14 0.15
30 5 0.05
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (27 bp):
AATAAAAATATAAAATTATTAAATTTC
Found at i:33081003 original size:36 final size:37
Alignment explanation
Indices: 33080963--33081035 Score: 87
Period size: 36 Copynumber: 2.0 Consensus size: 37
33080953 ATTTTATTAG
* *
33080963 AAATT-AAAATATATATATAAATCATAAAAA-TATAAA
1 AAATTGAAAAT-TATATAAAAATAATAAAAATTATAAA
* *
33080999 AAATTGTAAATTTTATAAAAATAATAAAAATTATAAA
1 AAATTGAAAATTATATAAAAATAATAAAAATTATAAA
33081036 TTGCATAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
36 21 0.68
37 10 0.32
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (37 bp):
AAATTGAAAATTATATAAAAATAATAAAAATTATAAA
Found at i:33081252 original size:19 final size:20
Alignment explanation
Indices: 33081207--33081259 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
33081197 TTAGTACGAT
33081207 AATTTTTATAATTCTTTTAC
1 AATTTTTATAATTCTTTTAC
* *
33081227 AAATTTTATATTTC-TTTAC
1 AATTTTTATAATTCTTTTAC
33081246 AATTTTTTATAATT
1 AA-TTTTTATAATT
33081260 TTCTTACGAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 7 0.25
20 21 0.75
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (20 bp):
AATTTTTATAATTCTTTTAC
Found at i:33103590 original size:236 final size:229
Alignment explanation
Indices: 33103148--33103614 Score: 672
Period size: 230 Copynumber: 2.0 Consensus size: 229
33103138 TCTGGCAATG
33103148 TCTTACCAGAACTTCATTCATTTTGCTCCTTGAAACTAAACGACAAACCCTTTTGCTTCCTTCTC
1 TCTTACCAGAACTTCATTCATTTTGCTCCTTGAAACTAAACGACAAACCCTTTTGCTTCCTTCTC
*
33103213 CTCTACAGGTAAATGGGTTCTGTGCTTTTTTTTTTCTTTCTTGTTTTGAAACTTTTAATGAGAAT
66 CTCCACAGGTAAATGGGTTCTGTGCTTTTTTTTTTCTTTCTTGTTTTGAAACTTTTAATGAGAAT
* * *
33103278 TTATGGGTTATTTTTTGGGGTTTAGTGTTGTTTTTACTATATATGTTCTTAGCCTTTTCAGTTTG
131 TCATGGGTTATTTTTTGGGGTTTAGTGTTGTTTTTACTATACATGTTCTCAGCCTTTTCAGTTTG
*
33103343 GAGG-GTTTTTTTGGGTTTAAATCTATGAGATTT
196 GAGGTGTTTTTTTGGGTTTAAATCCATGAGATTT
* * * * * *
33103376 TCTTACTAGAAGTTTATTCATTTTGCTCTTAATGAAACTAAATGACATACCCTTTTGCTTCCTTC
1 TCTTACCAGAACTTCATTCATTTTGCTCCT--TGAAACTAAACGACAAACCCTTTTGCTTCCTTC
* *
33103441 TCCTCCACAGGTAAATGGGTTTTGTGCTCTCTCTCTTTTTTCTTTTCTTTTTTTTTTG-AACATT
64 TCCTCCACAGGTAAATGGGTTCTGTGCT-T-T-T-TTTTTTC-TTTC---TTGTTTTGAAAC-TT
33103505 TTAATGAGAATTCATGGGTT-TTTTTT-GGGTTTAGTGTTGTTTTTACTATACATGTTCTCAGCC
120 TTAATGAGAATTCATGGGTTATTTTTTGGGGTTTAGTGTTGTTTTTACTATACATGTTCTCAGCC
* *
33103568 TTTTCAGTTTGGAGGTTTTTTTTTGGGTTTAAATCCATGGGATTT
185 TTTTCAGTTTGGAGGTGTTTTTTTGGGTTTAAATCCATGAGATTT
33103613 TC
1 TC
33103615 AGGTTAGAGT
Statistics
Matches: 212, Mismatches: 15, Indels: 15
0.88 0.06 0.06
Matches are distributed among these distances:
228 26 0.12
230 57 0.27
231 1 0.00
232 1 0.00
233 1 0.00
234 7 0.03
235 4 0.02
236 50 0.24
237 37 0.17
238 28 0.13
ACGTcount: A:0.19, C:0.15, G:0.16, T:0.49
Consensus pattern (229 bp):
TCTTACCAGAACTTCATTCATTTTGCTCCTTGAAACTAAACGACAAACCCTTTTGCTTCCTTCTC
CTCCACAGGTAAATGGGTTCTGTGCTTTTTTTTTTCTTTCTTGTTTTGAAACTTTTAATGAGAAT
TCATGGGTTATTTTTTGGGGTTTAGTGTTGTTTTTACTATACATGTTCTCAGCCTTTTCAGTTTG
GAGGTGTTTTTTTGGGTTTAAATCCATGAGATTT
Found at i:33104425 original size:22 final size:20
Alignment explanation
Indices: 33104379--33104433 Score: 67
Period size: 19 Copynumber: 2.7 Consensus size: 20
33104369 CACATTACTT
33104379 ATAATATTTATTATTTATAA
1 ATAATATTTATTATTTATAA
*
33104399 A-AATATTTATTATCTTGTAAA
1 ATAATATTTATTAT-TTAT-AA
*
33104420 ATAATATTTTTTAT
1 ATAATATTTATTAT
33104434 AATTTTACAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 12 0.40
20 4 0.13
21 3 0.10
22 11 0.37
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (20 bp):
ATAATATTTATTATTTATAA
Found at i:33105470 original size:28 final size:28
Alignment explanation
Indices: 33105438--33105521 Score: 70
Period size: 28 Copynumber: 3.1 Consensus size: 28
33105428 ATTAATTTAT
33105438 ATATTATTTTATTAAATTGTATTTAATA
1 ATATTATTTTATTAAATTGTATTTAATA
*
33105466 ATATTATGTTA--AAATATG-A-TTAA-A
1 ATATTATTTTATTAAAT-TGTATTTAATA
* * * *
33105490 ATATTGTTTTTATTAAAATATTTTTAATA
1 ATATT-ATTTTATTAAATTGTATTTAATA
33105519 ATA
1 ATA
33105522 ATCTTTTTAA
Statistics
Matches: 43, Mismatches: 6, Indels: 13
0.69 0.10 0.21
Matches are distributed among these distances:
24 6 0.14
25 8 0.19
26 6 0.14
27 5 0.12
28 14 0.33
29 4 0.09
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (28 bp):
ATATTATTTTATTAAATTGTATTTAATA
Found at i:33105721 original size:16 final size:16
Alignment explanation
Indices: 33105709--33105750 Score: 84
Period size: 16 Copynumber: 2.6 Consensus size: 16
33105699 AATTACAACT
33105709 CTATTCCATTACAGTC
1 CTATTCCATTACAGTC
33105725 CTATTCCATTACAGTC
1 CTATTCCATTACAGTC
33105741 CTATTCCATT
1 CTATTCCATT
33105751 CACCCCAACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.24, C:0.31, G:0.05, T:0.40
Consensus pattern (16 bp):
CTATTCCATTACAGTC
Found at i:33108354 original size:209 final size:209
Alignment explanation
Indices: 33107994--33108414 Score: 698
Period size: 209 Copynumber: 2.0 Consensus size: 209
33107984 TAATTATTTA
33107994 TTTAGATCAAGATAAATCTCAACCAGAATTAAATCAAGGAAAGCCAAAAATCACGGATTAGCTCG
1 TTTAGATCAAGATAAATCTCAACCAGAATTAAATCAAGGAAAGCCAAAAATCACGGATTAGCTCG
* * ** *
33108059 ATCGCATTTCAATGCTCTAGTTGTCAATGTAAGTTCATAGTATTTCTATATGTAATTGAATTTCT
66 ATCACATTTCAATGCTCTAGTTGTCAATGTAAGTTCATAGTATTACTATACATAATTGAATTTCC
33108124 ACTTGTTTGTTTACAATATAATTATGTAATTAATTGCTTACACTTAATTATTTCCCTAAATTACA
131 ACTTGTTTGTTTACAATATAATTATGTAATTAATTGCTTACACTTAATTATTTCCCTAAATTACA
*
33108189 CATACGTGCCCCTG
196 CATACATGCCCCTG
* * * * * *
33108203 TTTAGATCAAGATAAATCTCAATCGGAATTAAATCGAGGAAAGGCGAAAATCATGGATTAGCTCG
1 TTTAGATCAAGATAAATCTCAACCAGAATTAAATCAAGGAAAGCCAAAAATCACGGATTAGCTCG
*
33108268 ATCACATTTCAATGCTCTAGTTGTCAATGTAAGTTCATAGTATTACTATACATAATTGAGTTTCC
66 ATCACATTTCAATGCTCTAGTTGTCAATGTAAGTTCATAGTATTACTATACATAATTGAATTTCC
* * *
33108333 ACTTGTTTTTTTACAATATAATTATGTAATTAATTGCTTACACTTAATTATTTCCCTGAATTGCA
131 ACTTGTTTGTTTACAATATAATTATGTAATTAATTGCTTACACTTAATTATTTCCCTAAATTACA
33108398 CATACATGCCCCTG
196 CATACATGCCCCTG
33108412 TTT
1 TTT
33108415 GTACTTCGGT
Statistics
Matches: 196, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
209 196 1.00
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (209 bp):
TTTAGATCAAGATAAATCTCAACCAGAATTAAATCAAGGAAAGCCAAAAATCACGGATTAGCTCG
ATCACATTTCAATGCTCTAGTTGTCAATGTAAGTTCATAGTATTACTATACATAATTGAATTTCC
ACTTGTTTGTTTACAATATAATTATGTAATTAATTGCTTACACTTAATTATTTCCCTAAATTACA
CATACATGCCCCTG
Found at i:33115951 original size:11 final size:13
Alignment explanation
Indices: 33115935--33115968 Score: 54
Period size: 11 Copynumber: 2.8 Consensus size: 13
33115925 AATTTCAAGG
33115935 GAAAATTTCG-T-
1 GAAAATTTCGTTC
33115946 GAAAATTTCGTTC
1 GAAAATTTCGTTC
33115959 GAAAATTTCG
1 GAAAATTTCG
33115969 ACGTTTGGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 10 0.48
12 1 0.05
13 10 0.48
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (13 bp):
GAAAATTTCGTTC
Found at i:33117175 original size:33 final size:34
Alignment explanation
Indices: 33117133--33117342 Score: 149
Period size: 33 Copynumber: 5.7 Consensus size: 34
33117123 TCCCCCAAGG
33117133 GGTTGCTAAGTGCTGATTCC-CCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCACCGAATCATTGGT
* *
33117166 GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTGAAAG-
1 GGTTGCTAAGTGCTGATTCCACCGAATC----AT-TG---GT
*
33117207 GGTTTGCTAAGTGCTGATTCC-CCGATTCATTGGT
1 GG-TTGCTAAGTGCTGATTCCACCGAATCATTGGT
* * *
33117241 GGTTGCTAAGTGCTGATTCCACCGTATTTTTGAATGTGAAAAGG
1 GGTTGCTAAGTGCTGATTCCACCG-A---AT-CAT-TG----GT
*
33117285 GGTTGTTAAGTGCTGATTCC-CCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCACCGAATCATTGGT
*
33117318 GGTTGCTAAGTGCTGAATCCACCGA
1 GGTTGCTAAGTGCTGATTCCACCGA
33117343 TAACGGATAA
Statistics
Matches: 141, Mismatches: 13, Indels: 45
0.71 0.07 0.23
Matches are distributed among these distances:
33 57 0.40
34 15 0.11
35 1 0.01
36 2 0.01
37 4 0.03
38 6 0.04
39 5 0.04
40 2 0.01
41 7 0.05
42 19 0.13
43 3 0.02
44 20 0.14
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.33
Consensus pattern (34 bp):
GGTTGCTAAGTGCTGATTCCACCGAATCATTGGT
Found at i:33117218 original size:75 final size:76
Alignment explanation
Indices: 33117129--33117341 Score: 340
Period size: 75 Copynumber: 2.8 Consensus size: 76
33117119 TGATTCCCCC
33117129 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATCCCACCGTA-T
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGAT-CCACCGTATT
33117193 CTTAAATGTG-A
65 CTTAAATGTGAA
* *
33117204 AAGGGTTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGA-TCCACCGTATT
* *
33117269 TTTGAATGTGAA
65 CTTAAATGTGAA
*
33117281 AAGGGGTTGTTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGAATCCACCG
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTG-ATCCACCG
33117342 ATAACGGATA
Statistics
Matches: 127, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
75 59 0.46
76 10 0.08
77 57 0.45
78 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (76 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATCCACCGTATTC
TTAAATGTGAA
Found at i:33117944 original size:9 final size:9
Alignment explanation
Indices: 33117930--33117971 Score: 84
Period size: 9 Copynumber: 4.7 Consensus size: 9
33117920 GGCTAAGCAA
33117930 AAAATTCTG
1 AAAATTCTG
33117939 AAAATTCTG
1 AAAATTCTG
33117948 AAAATTCTG
1 AAAATTCTG
33117957 AAAATTCTG
1 AAAATTCTG
33117966 AAAATT
1 AAAATT
33117972 TTACGGAACT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.33
Consensus pattern (9 bp):
AAAATTCTG
Found at i:33125333 original size:25 final size:25
Alignment explanation
Indices: 33125299--33125352 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
33125289 AATAAATCAG
*
33125299 CATGCATGCTTCCTTGAATGTTGTT
1 CATGCATGCTTCCTTGAATGCTGTT
** *
33125324 CATGCATGCTTTTTTTAATGCTGTT
1 CATGCATGCTTCCTTGAATGCTGTT
33125349 CATG
1 CATG
33125353 TACCTGCACA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.17, C:0.19, G:0.19, T:0.46
Consensus pattern (25 bp):
CATGCATGCTTCCTTGAATGCTGTT
Found at i:33125570 original size:76 final size:76
Alignment explanation
Indices: 33125437--33125578 Score: 214
Period size: 76 Copynumber: 1.9 Consensus size: 76
33125427 TTCGGCAGCA
* * * * *
33125437 ACAATTAACTTCAGCTGGACACCATTTAAGACATCATTAAATTCGATAGTAGTAAGACAAATTAA
1 ACAATTAAATTCAGCTAGACACCATTTAAGACATCATTAAATTCGACAGCAGCAAGACAAATTAA
33125502 ATGATGTAATG
66 ATGATGTAATG
*
33125513 ACAATTAAATTCAGCTAGACACCATTTAAGACATCATTAAATTCGACAGCCA-CAAGACACATTA
1 ACAATTAAATTCAGCTAGACACCATTTAAGACATCATTAAATTCGACAG-CAGCAAGACAAATTA
33125577 AA
65 AA
33125579 GTGGCTCTTT
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
76 58 0.98
77 1 0.02
ACGTcount: A:0.44, C:0.18, G:0.12, T:0.26
Consensus pattern (76 bp):
ACAATTAAATTCAGCTAGACACCATTTAAGACATCATTAAATTCGACAGCAGCAAGACAAATTAA
ATGATGTAATG
Found at i:33127292 original size:12 final size:12
Alignment explanation
Indices: 33127275--33127299 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33127265 AAACACCATA
33127275 GAAGCATGCTAG
1 GAAGCATGCTAG
33127287 GAAGCATGCTAG
1 GAAGCATGCTAG
33127299 G
1 G
33127300 TTCGACCATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.36, T:0.16
Consensus pattern (12 bp):
GAAGCATGCTAG
Found at i:33128007 original size:29 final size:28
Alignment explanation
Indices: 33127975--33128133 Score: 77
Period size: 30 Copynumber: 5.4 Consensus size: 28
33127965 TATCGAATGC
33127975 GAAAAGGGATAGCTTCGGCTATCGATTAT
1 GAAAAGGGAT-GCTTCGGCTATCGATTAT
* * * * * * **
33128004 GAAAAAGGATGGTGACGACCATCAACAAT
1 GAAAAGGGATGCT-TCGGCTATCGATTAT
* * * * *
33128033 GAAAAGGGATGGTAACGACCATCGAACTAT
1 GAAAAGGGATGCT-TCGGCTATCG-ATTAT
*
33128063 GAAAAGGGATGACTTCGGTTATCGATCTAT
1 GAAAAGGGATG-CTTCGGCTATCGAT-TAT
* * *
33128093 GAAATGAGATAGCTTCGGCTAT-GAAATCAT
1 GAAAAGGGAT-GCTTCGGCTATCG--ATTAT
33128123 GAAAAGGGATG
1 GAAAAGGGATG
33128134 GTGACGACCA
Statistics
Matches: 99, Mismatches: 24, Indels: 14
0.72 0.18 0.10
Matches are distributed among these distances:
28 2 0.02
29 42 0.42
30 51 0.52
31 4 0.04
ACGTcount: A:0.37, C:0.14, G:0.27, T:0.22
Consensus pattern (28 bp):
GAAAAGGGATGCTTCGGCTATCGATTAT
Found at i:33128067 original size:30 final size:30
Alignment explanation
Indices: 33128001--33128192 Score: 131
Period size: 30 Copynumber: 6.4 Consensus size: 30
33127991 GGCTATCGAT
*
33128001 TATGAAAAAGGATGGTGACGACCATC-AAC
1 TATGAAAAGGGATGGTGACGACCATCGAAC
* *
33128030 AATGAAAAGGGATGGTAACGACCATCGAAC
1 TATGAAAAGGGATGGTGACGACCATCGAAC
* * *** *
33128060 TATGAAAAGGGATGACT-TCGGTTATCGATC
1 TATGAAAAGGGATG-GTGACGACCATCGAAC
* * * * * * *
33128090 TATGAAATGAGATAGCT-TCGGCTAT-GAAA
1 TATGAAAAGGGAT-GGTGACGACCATCGAAC
33128119 TCATGAAAAGGGATGGTGACGACCATCGAAC
1 T-ATGAAAAGGGATGGTGACGACCATCGAAC
* * * ** *
33128150 AATGAAAATGGATGGCGACGACCATTAAAT
1 TATGAAAAGGGATGGTGACGACCATCGAAC
33128180 TATGAAAAGGGAT
1 TATGAAAAGGGAT
33128193 AGCTTCGGCT
Statistics
Matches: 127, Mismatches: 30, Indels: 11
0.76 0.18 0.07
Matches are distributed among these distances:
29 28 0.22
30 94 0.74
31 5 0.04
ACGTcount: A:0.39, C:0.14, G:0.26, T:0.21
Consensus pattern (30 bp):
TATGAAAAGGGATGGTGACGACCATCGAAC
Found at i:33128184 original size:90 final size:90
Alignment explanation
Indices: 33128031--33128202 Score: 211
Period size: 90 Copynumber: 1.9 Consensus size: 90
33128021 ACCATCAACA
* ** *** **
33128031 ATGAAAAGGGATGGTAACGACCATCGAACTATGAAAAGGGATGACTTCGGTTATCGATCTATGAA
1 ATGAAAAGGGATGGTAACGACCATCGAACAATGAAAAGGGATGACGACGACCATAAATCTATGAA
*
33128096 ATGAGATAGCTTCGGCTATGAAATC
66 AAGAGATAGCTTCGGCTATGAAATC
* * *
33128121 ATGAAAAGGGATGGTGACGACCATCGAACAATGAAAATGGATGGCGACGACCATTAAAT-TATGA
1 ATGAAAAGGGATGGTAACGACCATCGAACAATGAAAAGGGATGACGACGACCA-TAAATCTATGA
*
33128185 AAAGGGATAGCTTCGGCT
65 AAAGAGATAGCTTCGGCT
33128203 GTCGAACTAT
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
90 65 0.96
91 3 0.04
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.22
Consensus pattern (90 bp):
ATGAAAAGGGATGGTAACGACCATCGAACAATGAAAAGGGATGACGACGACCATAAATCTATGAA
AAGAGATAGCTTCGGCTATGAAATC
Found at i:33128185 original size:60 final size:60
Alignment explanation
Indices: 33127999--33128192 Score: 160
Period size: 60 Copynumber: 3.2 Consensus size: 60
33127989 TCGGCTATCG
* * * *
33127999 ATTATGAAAAAGGATGGTGACGACCATC-AACAATGAAAAGGGATGGTAACGACCATCGA
1 ATTATGAAAAGGGATGGTGACGACCATCGAACAATGAAAATGGATGGCAACGACCATCAA
* * * *** * * * ** * * *
33128058 ACTATGAAAAGGGATGACT-TCGGTTATCGATCTATG-AAATGAGATAGCTTCGGCTATGAA
1 ATTATGAAAAGGGATG-GTGACGACCATCGAACAATGAAAATG-GATGGCAACGACCATCAA
* * *
33128118 ATCATGAAAAGGGATGGTGACGACCATCGAACAATGAAAATGGATGGCGACGACCATTAA
1 ATTATGAAAAGGGATGGTGACGACCATCGAACAATGAAAATGGATGGCAACGACCATCAA
33128178 ATTATGAAAAGGGAT
1 ATTATGAAAAGGGAT
33128193 AGCTTCGGCT
Statistics
Matches: 96, Mismatches: 34, Indels: 9
0.69 0.24 0.06
Matches are distributed among these distances:
59 24 0.25
60 67 0.70
61 5 0.05
ACGTcount: A:0.39, C:0.14, G:0.26, T:0.21
Consensus pattern (60 bp):
ATTATGAAAAGGGATGGTGACGACCATCGAACAATGAAAATGGATGGCAACGACCATCAA
Found at i:33129345 original size:42 final size:42
Alignment explanation
Indices: 33129298--33129406 Score: 119
Period size: 42 Copynumber: 2.6 Consensus size: 42
33129288 ACAACCTAGC
* * *
33129298 ACACGGTCTGACACACGGGCGTGTGAGGTTATTTTAAAGGGT
1 ACACGGCCTGACACACGGGCATGTGAGGTTATTTCAAAGGGT
* * * *
33129340 ACACGGCCTGGCACATGGGCATGTGGGGTTATTTCGAAGGGT
1 ACACGGCCTGACACACGGGCATGTGAGGTTATTTCAAAGGGT
* * * *
33129382 GCACGGCATGGCACATGGGCATGTG
1 ACACGGCCTGACACACGGGCATGTG
33129407 GCTTAGCTGT
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.21, C:0.19, G:0.37, T:0.23
Consensus pattern (42 bp):
ACACGGCCTGACACACGGGCATGTGAGGTTATTTCAAAGGGT
Done.