Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 110 of 207
Found at i:33129407 original size:42 final size:42
Alignment explanation
Indices: 33129309--33129407 Score: 135
Period size: 42 Copynumber: 2.4 Consensus size: 42
33129299 CACGGTCTGA
* * * * *
33129309 CACACGGGCGTGTGAGGTTATTTTAAAGGGTACACGGCCTGG
1 CACATGGGCATGTGGGGTTATTTCAAAGGGTACACGGCATGG
* *
33129351 CACATGGGCATGTGGGGTTATTTCGAAGGGTGCACGGCATGG
1 CACATGGGCATGTGGGGTTATTTCAAAGGGTACACGGCATGG
33129393 CACATGGGCATGTGG
1 CACATGGGCATGTGG
33129408 CTTAGCTGTG
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.20, C:0.18, G:0.38, T:0.23
Consensus pattern (42 bp):
CACATGGGCATGTGGGGTTATTTCAAAGGGTACACGGCATGG
Found at i:33133274 original size:6 final size:6
Alignment explanation
Indices: 33133263--33133345 Score: 60
Period size: 6 Copynumber: 13.0 Consensus size: 6
33133253 TGATCAATTG
* * * *
33133263 AAAGAA AAAGAAA AAATGAA AATGAGGA AAAG-A AAAGAA AAATAA TAAGAG
1 AAAGAA AAAG-AA AAA-GAA AA--AGAA AAAGAA AAAGAA AAAGAA AAAGAA
*
33133314 AAAGAGA AAAGAA AATGAGA AAAGAA AAAGAA
1 AAAGA-A AAAGAA AAAGA-A AAAGAA AAAGAA
33133346 GAAAAATAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 14
0.73 0.11 0.17
Matches are distributed among these distances:
5 5 0.08
6 31 0.51
7 19 0.31
8 5 0.08
9 1 0.02
ACGTcount: A:0.73, C:0.00, G:0.20, T:0.06
Consensus pattern (6 bp):
AAAGAA
Found at i:33133315 original size:19 final size:17
Alignment explanation
Indices: 33133293--33133342 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 17
33133283 AATGAGGAAA
33133293 AGAAAAGAAAAATAATAAG
1 AGAAAAGAAAAA-AA-AAG
*
33133312 AGAAAGAGAAAAGAAAATG
1 AGAAA-AGAAAA-AAAAAG
33133331 AGAAAAGAAAAA
1 AGAAAAGAAAAA
33133343 GAAGAAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
17 1 0.04
18 6 0.21
19 12 0.43
20 8 0.29
21 1 0.04
ACGTcount: A:0.74, C:0.00, G:0.20, T:0.06
Consensus pattern (17 bp):
AGAAAAGAAAAAAAAAG
Found at i:33133321 original size:25 final size:27
Alignment explanation
Indices: 33133262--33133328 Score: 81
Period size: 25 Copynumber: 2.6 Consensus size: 27
33133252 TTGATCAATT
33133262 GAAAGA-AAAAGAAAAAATGAAAATGAG
1 GAAAGAGAAAAG-AAAAATGAAAATGAG
33133289 GAAA-AGAAAAGAAAAAT-AATAA-GA-
1 GAAAGAGAAAAGAAAAATGAA-AATGAG
33133313 GAAAGAGAAAAGAAAA
1 GAAAGAGAAAAGAAAA
33133329 TGAGAAAAGA
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
24 4 0.11
25 15 0.41
26 9 0.24
27 9 0.24
ACGTcount: A:0.73, C:0.00, G:0.21, T:0.06
Consensus pattern (27 bp):
GAAAGAGAAAAGAAAAATGAAAATGAG
Found at i:33133333 original size:13 final size:13
Alignment explanation
Indices: 33133317--33133370 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
33133307 ATAAGAGAAA
33133317 GAGAAAAGAAAAT
1 GAGAAAAGAAAAT
33133330 GAGAAAAGAAAA-
1 GAGAAAAGAAAAT
*
33133342 -AGAAGA-AAAAT
1 GAGAAAAGAAAAT
*
33133353 -A-AAAAGAATAT
1 GAGAAAAGAAAAT
33133364 GAGAAAA
1 GAGAAAA
33133371 AAGTCTGATT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
10 7 0.21
11 10 0.29
12 1 0.03
13 16 0.47
ACGTcount: A:0.72, C:0.00, G:0.20, T:0.07
Consensus pattern (13 bp):
GAGAAAAGAAAAT
Found at i:33133343 original size:44 final size:45
Alignment explanation
Indices: 33133264--33133354 Score: 125
Period size: 44 Copynumber: 2.0 Consensus size: 45
33133254 GATCAATTGA
33133264 AAGAAAAAGAAAAAATGAAAATGAGGAAAAGAAAAGAA-AAATAAT
1 AAGAAAAAGAAAAAATGAAAATGAGGAAAAGAAAAGAAGAAA-AAT
* *
33133309 AAGAGAAAGAGAAAA-GAAAATGA-GAAAAGAAAAAGAAGAAAAAT
1 AAGAAAAAGAAAAAATGAAAATGAGGAAAAG-AAAAGAAGAAAAAT
33133353 AA
1 AA
33133355 AAAGAATATG
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
43 6 0.14
44 20 0.48
45 16 0.38
ACGTcount: A:0.74, C:0.00, G:0.20, T:0.07
Consensus pattern (45 bp):
AAGAAAAAGAAAAAATGAAAATGAGGAAAAGAAAAGAAGAAAAAT
Found at i:33133348 original size:47 final size:45
Alignment explanation
Indices: 33133263--33133360 Score: 119
Period size: 47 Copynumber: 2.1 Consensus size: 45
33133253 TGATCAATTG
33133263 AAAGAAAAAGAAAAAATGAAAATGAGGAAAAGAAAAGAAAAATAA
1 AAAGAAAAAGAAAAAATGAAAATGAGGAAAAGAAAAGAAAAATAA
* * *
33133308 TAAGAGAAAGAGAAAA-GAAAATGA-GAAAAGAAAAAGAAGAAAAATAA
1 AAAGAAAAAGAAAAAATGAAAATGAGGAAAAG---AA-AAGAAAAATAA
33133355 AAAGAA
1 AAAGAA
33133361 TATGAGAAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
43 6 0.14
44 8 0.18
45 13 0.30
46 2 0.05
47 15 0.34
ACGTcount: A:0.74, C:0.00, G:0.19, T:0.06
Consensus pattern (45 bp):
AAAGAAAAAGAAAAAATGAAAATGAGGAAAAGAAAAGAAAAATAA
Found at i:33136343 original size:50 final size:50
Alignment explanation
Indices: 33136221--33136415 Score: 203
Period size: 50 Copynumber: 3.9 Consensus size: 50
33136211 GATAATAACA
* * ** ** * * * *
33136221 TGCCAAAGCCATGCCCCAGGCATGGTCTTACATGGGATGTTTCTTGT-GC
1 TGCCAATGCCATGTCCCAGATATGGTCTTACATGGGACCTCTCATATCGG
* **
33136270 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGATATGGTCTTACATGGGACCTCTCATATCGG
* * ** *
33136320 TGCCCATGCCATGTCCCAAATATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGATATGGTCTTACATGGGACCTCTCATATCGG
* *
33136370 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATA
1 TGCCAATGCCATGTCCCAGATATGGTCTTACATGGGACCTCTCATA
33136416 ACCTCAATGA
Statistics
Matches: 119, Mismatches: 26, Indels: 1
0.82 0.18 0.01
Matches are distributed among these distances:
49 37 0.31
50 82 0.69
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGATATGGTCTTACATGGGACCTCTCATATCGG
Found at i:33139138 original size:10 final size:10
Alignment explanation
Indices: 33139125--33139163 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
33139115 AGCTCAAATC
*
33139125 AGCTCGTTTG
1 AGCTCATTTG
*
33139135 AGCTCATTTT
1 AGCTCATTTG
*
33139145 AGCTCATTCG
1 AGCTCATTTG
33139155 AGCTCATTT
1 AGCTCATTT
33139164 CAATTTATTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.18, C:0.23, G:0.18, T:0.41
Consensus pattern (10 bp):
AGCTCATTTG
Found at i:33157041 original size:15 final size:16
Alignment explanation
Indices: 33157012--33157041 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
33157002 CAAACATGCT
33157012 TTAACACATTATCAAA
1 TTAACACATTATCAAA
33157028 TTAACACA-TATCAA
1 TTAACACATTATCAA
33157042 TAAGGTACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:33167005 original size:12 final size:12
Alignment explanation
Indices: 33166990--33167014 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33166980 AATAAATAAA
33166990 TAAAAATAAAAC
1 TAAAAATAAAAC
33167002 TAAAAATAAAAC
1 TAAAAATAAAAC
33167014 T
1 T
33167015 TTACAACTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (12 bp):
TAAAAATAAAAC
Found at i:33183216 original size:40 final size:40
Alignment explanation
Indices: 33183157--33183293 Score: 161
Period size: 40 Copynumber: 3.4 Consensus size: 40
33183147 GTTTGGATAA
* *
33183157 AAAATGCCGCTAAAAATCGAGCATTAGCGGCACTTTACA-T
1 AAAACGCCGCTAAAAATCGAGCATTAGCGGCACTTTA-AGG
* *
33183197 AAAACGCCACTAAAGATCGAGCATTAGCGGCACTTTAAGG
1 AAAACGCCGCTAAAAATCGAGCATTAGCGGCACTTTAAGG
* * * *
33183237 AAAGCGCCGCTAAAAAT-GAGCATTAGCGGCATTTTCTAGA
1 AAAACGCCGCTAAAAATCGAGCATTAGCGGCACTTT-AAGG
*
33183277 AAAACGCCGCAAAAAAT
1 AAAACGCCGCTAAAAAT
33183294 GTAAGCCCAA
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 18 0.22
40 65 0.78
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.19
Consensus pattern (40 bp):
AAAACGCCGCTAAAAATCGAGCATTAGCGGCACTTTAAGG
Found at i:33183386 original size:41 final size:41
Alignment explanation
Indices: 33183327--33183603 Score: 279
Period size: 41 Copynumber: 6.8 Consensus size: 41
33183317 TGACCTTTCA
* * * *
33183327 GGGCTTTAGCGGCATTTTTTAAAAAGCGCTGCTAATGCTCG
1 GGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCT
* * * *
33183368 GGGCTTTAGTGGCGTTTTTGAAAAAGTGCCACTAACGCTCT
1 GGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCT
* * * *
33183409 GGCCTTTAGCGGCGTTTTTGAAAAAGTGCC-ATAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCT
* * * *
33183449 GGACTTTAGCGGCATTTTTAAAAAAGCGCCGCTAATGCTTT
1 GGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCT
* * ** *
33183490 GGTCTTTAGCGGCG-TTTTCAGAAAATTGTCGCTAATGCTCT
1 GGGCTTTAGCGGCGTTTTTGA-AAAAGCGCCGCTAATGCTCT
* * * * *
33183531 GGCCTTTAGTGGCATTTTCGAAAAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCT
* *
33183572 GTGCTTTAGTGGCGTTTTTGAAAAAGCGCCGC
1 GGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGC
33183604 AAAAATATTT
Statistics
Matches: 193, Mismatches: 40, Indels: 6
0.81 0.17 0.03
Matches are distributed among these distances:
40 38 0.20
41 151 0.78
42 4 0.02
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (41 bp):
GGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCT
Found at i:33183497 original size:122 final size:122
Alignment explanation
Indices: 33183328--33183603 Score: 340
Period size: 122 Copynumber: 2.3 Consensus size: 122
33183318 GACCTTTCAG
* * * *
33183328 GGCTTTAGCGGCATTTTTTAAAAAGCGCTGCTAATGCTCGGGGCTTTAGTGGCGTTTT-TGAAAA
1 GGCTTTAGCGGCATTTTTAAAAAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTCAG-AAA
* * *
33183392 AGTGCCACTAACGCTCTGGCCTTTAGCGGCGTTTTTGAAAAAGTGCC-ATAATGCTCA
65 AGTGCCACTAACGCTCTGGCCTTTAGCGGCATTTTCGAAAAAGCGCCGATAATGCTCA
** *
33183449 GGACTTTAGCGGCATTTTTAAAAAAGCGCCGCTAATGCTTTGGTCTTTAGCGGCGTTTTCAGAAA
1 GG-CTTTAGCGGCATTTTTAAAAAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTCAGAAA
* * * * * *
33183514 ATTGTCGCTAATGCTCTGGCCTTTAGTGGCATTTTCGAAAAAGCGCCGCTAATGCTCA
65 AGTGCCACTAACGCTCTGGCCTTTAGCGGCATTTTCGAAAAAGCGCCGATAATGCTCA
* * *
33183572 GTGCTTTAGTGGCGTTTTTGAAAAAGCGCCGC
1 G-GCTTTAGCGGCATTTTTAAAAAAGCGCCGC
33183604 AAAAATATTT
Statistics
Matches: 132, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
121 2 0.02
122 92 0.70
123 37 0.28
124 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (122 bp):
GGCTTTAGCGGCATTTTTAAAAAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTCAGAAAA
GTGCCACTAACGCTCTGGCCTTTAGCGGCATTTTCGAAAAAGCGCCGATAATGCTCA
Found at i:33183579 original size:82 final size:79
Alignment explanation
Indices: 33183356--33183597 Score: 261
Period size: 81 Copynumber: 3.0 Consensus size: 79
33183346 TAAAAAGCGC
* * * * * *
33183356 TGCTAATGCTCGGGGCTTTAGTGGCGTTTTTGAAAAAGTGCCACTAACGCTCTGGCCTTTAGCGG
1 TGCTAATGCTCAGGACTTTAGTGGCATTTTTGAAAAAGCGCCGCTAATGCTCTGGCCTTTAGCGG
*
33183421 CGTTTTTGAAAAAG
66 CGTTTTAGAAAAAG
* * * *
33183435 TGCCATAATGCTCAGGACTTTAGCGGCATTTTTAAAAAAGCGCCGCTAATGCTTTGGTCTTTAGC
1 TG-C-TAATGCTCAGGACTTTAGTGGCATTTTTGAAAAAGCGCCGCTAATGCTCTGGCCTTTAGC
*
33183500 GGCGTTTTCAGAAAATTG
64 GGCGTTTT-AGAAAA-AG
* * * * *
33183518 TCGCTAATGCTCTGGCCTTTAGTGGCATTTTCGAAAAAGCGCCGCTAATGCTCAGTG-CTTTAGT
1 T-GCTAATGCTCAGGACTTTAGTGGCATTTTTGAAAAAGCGCCGCTAATGCTCTG-GCCTTTAGC
*
33183582 GGCGTTTTTGAAAAAG
64 GGCGTTTTAGAAAAAG
33183598 CGCCGCAAAA
Statistics
Matches: 135, Mismatches: 22, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
79 2 0.01
80 2 0.01
81 63 0.47
82 63 0.47
83 4 0.03
84 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.32
Consensus pattern (79 bp):
TGCTAATGCTCAGGACTTTAGTGGCATTTTTGAAAAAGCGCCGCTAATGCTCTGGCCTTTAGCGG
CGTTTTAGAAAAAG
Found at i:33184258 original size:26 final size:28
Alignment explanation
Indices: 33184226--33184288 Score: 103
Period size: 26 Copynumber: 2.3 Consensus size: 28
33184216 TTATTTAATT
33184226 GGTTTAGGGATTCGGGTTAAAGTTT-AG
1 GGTTTAGGGATTCGGGTTAAAGTTTAAG
*
33184253 GG-TTAGGGATTCGGGTTAGAGTTTAAG
1 GGTTTAGGGATTCGGGTTAAAGTTTAAG
33184280 GGTTTAGGG
1 GGTTTAGGG
33184289 GTTTAGAGGT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
26 21 0.64
27 6 0.18
28 6 0.18
ACGTcount: A:0.21, C:0.03, G:0.41, T:0.35
Consensus pattern (28 bp):
GGTTTAGGGATTCGGGTTAAAGTTTAAG
Found at i:33184268 original size:13 final size:13
Alignment explanation
Indices: 33184229--33184271 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
33184219 TTTAATTGGT
33184229 TTAGGGATTCGGG
1 TTAGGGATTCGGG
** * *
33184242 TTAAAGTTTAGGG
1 TTAGGGATTCGGG
33184255 TTAGGGATTCGGG
1 TTAGGGATTCGGG
33184268 TTAG
1 TTAG
33184272 AGTTTAAGGG
Statistics
Matches: 22, Mismatches: 8, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.21, C:0.05, G:0.40, T:0.35
Consensus pattern (13 bp):
TTAGGGATTCGGG
Found at i:33184290 original size:8 final size:8
Alignment explanation
Indices: 33184273--33184343 Score: 60
Period size: 8 Copynumber: 9.4 Consensus size: 8
33184263 TCGGGTTAGA
*
33184273 GTTTAAGG
1 GTTTAGGG
33184281 GTTTAGGG
1 GTTTAGGG
*
33184289 GTTTAGAG
1 GTTTAGGG
*
33184297 GTTTAAGG
1 GTTTAGGG
33184305 G-TT-GGG
1 GTTTAGGG
* *
33184311 ATTTA-AG
1 GTTTAGGG
33184318 GTTTAGGG
1 GTTTAGGG
*
33184326 G-TTAGTG
1 GTTTAGGG
33184333 GTTTAGGG
1 GTTTAGGG
33184341 GTT
1 GTT
33184344 AGACTTTATG
Statistics
Matches: 48, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
6 2 0.04
7 15 0.31
8 31 0.65
ACGTcount: A:0.18, C:0.00, G:0.42, T:0.39
Consensus pattern (8 bp):
GTTTAGGG
Found at i:33184337 original size:15 final size:15
Alignment explanation
Indices: 33184317--33184345 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
33184307 TGGGATTTAA
33184317 GGTTTAGGGGTTAGT
1 GGTTTAGGGGTTAGT
33184332 GGTTTAGGGGTTAG
1 GGTTTAGGGGTTAG
33184346 ACTTTATGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.00, G:0.48, T:0.38
Consensus pattern (15 bp):
GGTTTAGGGGTTAGT
Found at i:33184729 original size:50 final size:50
Alignment explanation
Indices: 33184668--33184932 Score: 485
Period size: 50 Copynumber: 5.3 Consensus size: 50
33184658 AAACCATTTG
* *
33184668 ATATATTTAAATATTAATTTAAATAAAATTAATAAATAAGTTTAAATAAA
1 ATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAA
33184718 ATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAA
1 ATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAA
*
33184768 ATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAGTAAA
1 ATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAA
*
33184818 ATATATTTAAATATTATTTTAAATAGAATTAATAAATAAGTTTAAATAAA
1 ATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAA
*
33184868 ATATATTTAAATATTAGTTTAAATAGAATTAATAATTAAGTTTAAATAAA
1 ATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAA
33184918 ATATATTTAAATATT
1 ATATATTTAAATATT
33184933 TAAATATTAG
Statistics
Matches: 208, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
50 208 1.00
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.42
Consensus pattern (50 bp):
ATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAA
Found at i:33184898 original size:15 final size:14
Alignment explanation
Indices: 33184698--33184798 Score: 53
Period size: 15 Copynumber: 7.6 Consensus size: 14
33184688 AAATAAAATT
*
33184698 AATAAATAAGTTTA
1 AATAAATTAGTTTA
33184712 AATAAAATATA-TTTA
1 AAT-AAAT-TAGTTTA
33184727 AAT--ATTAGTTTA
1 AATAAATTAGTTTA
*
33184739 AATAGA--A--TT-
1 AATAAATTAGTTTA
*
33184748 AATAAATAAGTTTA
1 AATAAATTAGTTTA
33184762 AATAAAATATA-TTTA
1 AAT-AAAT-TAGTTTA
33184777 AAT--ATTAGTTTA
1 AATAAATTAGTTTA
33184789 AATAGAATTA
1 AATA-AATTA
33184799 ATAAATAAGT
Statistics
Matches: 68, Mismatches: 3, Indels: 31
0.67 0.03 0.30
Matches are distributed among these distances:
9 5 0.07
10 2 0.03
11 5 0.07
12 19 0.28
13 2 0.03
14 7 0.10
15 26 0.38
16 2 0.03
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (14 bp):
AATAAATTAGTTTA
Found at i:33189283 original size:43 final size:43
Alignment explanation
Indices: 33189153--33189402 Score: 208
Period size: 43 Copynumber: 6.1 Consensus size: 43
33189143 TAATTTTTTT
* * *
33189153 TAAAAGTCATG-TTTTTAGCGGCGTTTGT-GAAAAAGTGCCGC
1 TAAAGGTCATGATTTTTAGCGGCGTTTGTGGTAAAAGCGCCGC
* * ** *
33189194 TAAAAGT--T-ATTTTTATTGCGGGGTTTGTAATAGAAGCGCCGC
1 TAAAGGTCATGATTTTTA--GCGGCGTTTGTGGTAAAAGCGCCGC
* *
33189236 TAAAGGTCATGATTTTTAGCGGCGTTTGTGGTAAAAGCACCGT
1 TAAAGGTCATGATTTTTAGCGGCGTTTGTGGTAAAAGCGCCGC
*
33189279 TAAAGATCATGATTTTTAGCGGCGTTTGT-GTGAAAAGCGCCGC
1 TAAAGGTCATGATTTTTAGCGGCGTTTGTGGT-AAAAGCGCCGC
* *
33189322 T-AA----A-GA----CAGCGGCGTTTGTGGAAAAAGCGCCGC
1 TAAAGGTCATGATTTTTAGCGGCGTTTGTGGTAAAAGCGCCGC
* * * *
33189355 TAAAGATCATGATCTTTAGCGGCGTTTGGGGTAAAAGCACCGC
1 TAAAGGTCATGATTTTTAGCGGCGTTTGTGGTAAAAGCGCCGC
33189398 TAAAG
1 TAAAG
33189403 TTAGCAACGT
Statistics
Matches: 169, Mismatches: 21, Indels: 36
0.75 0.09 0.16
Matches are distributed among these distances:
33 24 0.14
34 3 0.02
37 2 0.01
38 2 0.01
39 9 0.05
41 17 0.10
42 19 0.11
43 85 0.50
44 1 0.01
45 7 0.04
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (43 bp):
TAAAGGTCATGATTTTTAGCGGCGTTTGTGGTAAAAGCGCCGC
Found at i:33189338 original size:33 final size:33
Alignment explanation
Indices: 33189296--33189360 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
33189286 CATGATTTTT
33189296 AGCGGCGTTTGTGTG-AAAAGCGCCGCTAAAGAC
1 AGCGGCGTTTGTG-GAAAAAGCGCCGCTAAAGAC
33189329 AGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGA
1 AGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGA
33189361 TCATGATCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 1 0.03
33 30 0.97
ACGTcount: A:0.29, C:0.20, G:0.34, T:0.17
Consensus pattern (33 bp):
AGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGAC
Found at i:33189379 original size:76 final size:76
Alignment explanation
Indices: 33189253--33189402 Score: 230
Period size: 76 Copynumber: 2.0 Consensus size: 76
33189243 CATGATTTTT
* * * *
33189253 AGCGGCGTTTGTGGTAAAAGCACCGTTAAAGATCATGATTTTTAGCGGCGTTT-GTGTGAAAAGC
1 AGCGGCGTTTGTGGAAAAAGCACCGCTAAAGATCATGATCTTTAGCGGCGTTTGGGGT-AAAAGC
*
33189317 GCCGCTAAAGAC
65 ACCGCTAAAGAC
*
33189329 AGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGATCATGATCTTTAGCGGCGTTTGGGGTAAAAGCA
1 AGCGGCGTTTGTGGAAAAAGCACCGCTAAAGATCATGATCTTTAGCGGCGTTTGGGGTAAAAGCA
33189394 CCGCTAAAG
66 CCGCTAAAG
33189403 TTAGCAACGT
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
76 64 0.96
77 3 0.04
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (76 bp):
AGCGGCGTTTGTGGAAAAAGCACCGCTAAAGATCATGATCTTTAGCGGCGTTTGGGGTAAAAGCA
CCGCTAAAGAC
Found at i:33191306 original size:20 final size:21
Alignment explanation
Indices: 33191265--33191306 Score: 52
Period size: 20 Copynumber: 2.0 Consensus size: 21
33191255 AAAAAAAAAA
*
33191265 AATTTTATATAATAAAATTTT
1 AATTTTATATAATAAAACTTT
33191286 AATTTT-TAT-ATAAATACTTT
1 AATTTTATATAATAAA-ACTTT
33191306 A
1 A
33191307 CATTATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
19 5 0.26
20 8 0.42
21 6 0.32
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (21 bp):
AATTTTATATAATAAAACTTT
Found at i:33191405 original size:32 final size:31
Alignment explanation
Indices: 33191340--33191430 Score: 89
Period size: 32 Copynumber: 2.9 Consensus size: 31
33191330 ATAAAGATAG
* *
33191340 TAATTTTTATTTAAATATATATAATTTTACA
1 TAATTTTTAATTAAATATATATAAATTTACA
*
33191371 TAATTTTTAATTATAAT-TCATTTAAATTTACA
1 TAATTTTTAATTA-AATAT-ATATAAATTTACA
* *
33191403 TAAATATTTAA-T-AATATAAATAAATTTA
1 T-AATTTTTAATTAAATATATATAAATTTA
33191431 ATTCAAAAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
30 12 0.24
31 14 0.28
32 16 0.32
33 8 0.16
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (31 bp):
TAATTTTTAATTAAATATATATAAATTTACA
Found at i:33191551 original size:12 final size:13
Alignment explanation
Indices: 33191534--33191562 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
33191524 TATTAAAAAA
33191534 TTATAAT-AAATT
1 TTATAATAAAATT
33191546 TTATAATAAAATT
1 TTATAATAAAATT
33191559 TTAT
1 TTAT
33191563 TTTATTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TTATAATAAAATT
Found at i:33191556 original size:23 final size:21
Alignment explanation
Indices: 33191501--33191559 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 21
33191491 TATATTATGA
33191501 TTATAAAAAAATTTAATAAACT
1 TTAT-AAAAAATTTAATAAACT
* *
33191523 ATATTAAAAAATTATAATAAATT
1 TTA-TAAAAAATT-TAATAAACT
33191546 TTATAATAAAATTT
1 TTATAA-AAAATTT
33191560 TATTTTATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
22 14 0.45
23 17 0.55
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (21 bp):
TTATAAAAAATTTAATAAACT
Found at i:33191574 original size:31 final size:29
Alignment explanation
Indices: 33191537--33191594 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 29
33191527 TAAAAAATTA
*
33191537 TAATAAATTTTATAATAAAATTTTATTTTAT
1 TAATAAATTATAT-ATAAAA-TTTATTTTAT
*
33191568 TAATAAATTATATATATAATTTATTTT
1 TAATAAATTATATATAAAATTTATTTT
33191595 TCTTCTTAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 8 0.32
30 5 0.20
31 12 0.48
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (29 bp):
TAATAAATTATATATAAAATTTATTTTAT
Found at i:33192458 original size:24 final size:25
Alignment explanation
Indices: 33192431--33192480 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
33192421 TAATTTTTAG
33192431 TTATTTTTAAAT-TAAATATTA-TAA
1 TTATTTTTAAATGTAAAT-TTAGTAA
*
33192455 TTATTTTTACATGTAAATTTAGTAA
1 TTATTTTTAAATGTAAATTTAGTAA
33192480 T
1 T
33192481 ATTATGAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 14 0.61
25 9 0.39
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (25 bp):
TTATTTTTAAATGTAAATTTAGTAA
Found at i:33192857 original size:66 final size:67
Alignment explanation
Indices: 33192778--33192920 Score: 234
Period size: 67 Copynumber: 2.1 Consensus size: 67
33192768 ATGGTAGTTA
* * * *
33192778 AAAAATTAGCATAATAACAAATTAACCCTAAA-TTTTACATATTATATCAATTTAGTTATCATTT
1 AAAAATTAACATAATAACAAATTAACCCTAAATTTTTACATAATATATCAATTTAGTCATAATTT
33192842 TT
66 TT
*
33192844 AAAAATTAACATAATAACATATTAACCCTAAATTTTTACATAATATATCAATTTAGTCATAATTT
1 AAAAATTAACATAATAACAAATTAACCCTAAATTTTTACATAATATATCAATTTAGTCATAATTT
33192909 TT
66 TT
33192911 AAAAATTAAC
1 AAAAATTAAC
33192921 CCTCAAAATT
Statistics
Matches: 71, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
66 30 0.42
67 41 0.58
ACGTcount: A:0.47, C:0.12, G:0.02, T:0.39
Consensus pattern (67 bp):
AAAAATTAACATAATAACAAATTAACCCTAAATTTTTACATAATATATCAATTTAGTCATAATTT
TT
Found at i:33193067 original size:19 final size:18
Alignment explanation
Indices: 33193043--33193080 Score: 67
Period size: 19 Copynumber: 2.1 Consensus size: 18
33193033 ATTAATATTA
33193043 ATATTAATTAAATATAAAT
1 ATATTAATTAAATA-AAAT
33193062 ATATTAATTAAATAAAAT
1 ATATTAATTAAATAAAAT
33193080 A
1 A
33193081 AAAAACCCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
ATATTAATTAAATAAAAT
Found at i:33193226 original size:30 final size:27
Alignment explanation
Indices: 33193170--33193227 Score: 80
Period size: 27 Copynumber: 2.0 Consensus size: 27
33193160 GGGGAGGAAG
*
33193170 ATTTTTATTTTTATTTAATATTAATAT
1 ATTTTTATTTTTATTTAATATAAATAT
33193197 ATTTTTATTTTTATTTATAAATATAAATAT
1 ATTTTTATTTTTA-TT-T-AATATAAATAT
33193227 A
1 A
33193228 AAATTTAGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 13 0.48
28 2 0.07
29 1 0.04
30 11 0.41
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (27 bp):
ATTTTTATTTTTATTTAATATAAATAT
Found at i:33196391 original size:17 final size:17
Alignment explanation
Indices: 33196353--33196401 Score: 55
Period size: 19 Copynumber: 2.8 Consensus size: 17
33196343 GGGTGAGAAG
33196353 TAAAAGTTTAGGGGAAAA
1 TAAAAGTTTAGGGG-AAA
*
33196371 TAAAAAGTTTTGGGG-AA
1 T-AAAAGTTTAGGGGAAA
33196388 TAAAAGTTTGAGGG
1 TAAAAGTTT-AGGG
33196402 AAAGTAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 8 0.30
17 6 0.22
18 1 0.04
19 12 0.44
ACGTcount: A:0.43, C:0.00, G:0.31, T:0.27
Consensus pattern (17 bp):
TAAAAGTTTAGGGGAAA
Found at i:33202453 original size:32 final size:32
Alignment explanation
Indices: 33202409--33202474 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 32
33202399 TCTTTTGTTA
*
33202409 AATTAACATTTAATTTAATTATCA-AATTAC-TT
1 AATTAACATTTAA--AAATTATCATAATTACATT
*
33202441 AATTAACCTTTAAAAATTATCATAATTACATT
1 AATTAACATTTAAAAATTATCATAATTACATT
33202473 AA
1 AA
33202475 AACCTATCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 8 0.27
31 6 0.20
32 16 0.53
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42
Consensus pattern (32 bp):
AATTAACATTTAAAAATTATCATAATTACATT
Found at i:33205897 original size:19 final size:20
Alignment explanation
Indices: 33205854--33205901 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
33205844 AGCTCAACTC
* *
33205854 TAGCTCAATGAGCTCGTTCT
1 TAGCTCACTAAGCTCGTTCT
33205874 TAGCTCACTAAGCTCGTT-T
1 TAGCTCACTAAGCTCGTTCT
33205893 TAGCTCACT
1 TAGCTCACT
33205902 TTAGTTTGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.21, C:0.27, G:0.17, T:0.35
Consensus pattern (20 bp):
TAGCTCACTAAGCTCGTTCT
Found at i:33207326 original size:11 final size:12
Alignment explanation
Indices: 33207288--33207324 Score: 65
Period size: 12 Copynumber: 3.0 Consensus size: 12
33207278 CCCGGGTTAG
33207288 ATTTGTAAAAAAA
1 ATTTG-AAAAAAA
33207301 ATTTGAAAAAAA
1 ATTTGAAAAAAA
33207313 ATTTGAAAAAAA
1 ATTTGAAAAAAA
33207325 TTCATGTACG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 19 0.79
13 5 0.21
ACGTcount: A:0.65, C:0.00, G:0.08, T:0.27
Consensus pattern (12 bp):
ATTTGAAAAAAA
Found at i:33214103 original size:19 final size:20
Alignment explanation
Indices: 33214060--33214107 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
33214050 AGCTCAACTC
* *
33214060 TAGCTCAATGAGCTCGTTCT
1 TAGCTCACTAAGCTCGTTCT
33214080 TAGCTCACTAAGCTCGTT-T
1 TAGCTCACTAAGCTCGTTCT
33214099 TAGCTCACT
1 TAGCTCACT
33214108 TTAGTTTGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.21, C:0.27, G:0.17, T:0.35
Consensus pattern (20 bp):
TAGCTCACTAAGCTCGTTCT
Found at i:33217861 original size:12 final size:12
Alignment explanation
Indices: 33217839--33217870 Score: 55
Period size: 12 Copynumber: 2.6 Consensus size: 12
33217829 CATAAAAATT
33217839 TAAACTAAGTAAA
1 TAAA-TAAGTAAA
33217852 TAAATAAGTAAA
1 TAAATAAGTAAA
33217864 TAAATAA
1 TAAATAA
33217871 AAATAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 15 0.79
13 4 0.21
ACGTcount: A:0.66, C:0.03, G:0.06, T:0.25
Consensus pattern (12 bp):
TAAATAAGTAAA
Found at i:33219281 original size:23 final size:22
Alignment explanation
Indices: 33219229--33219281 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
33219219 TCCACGTCTT
*
33219229 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
33219251 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
33219274 TTTCTTTT
1 TTTCTTTT
33219282 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:33221664 original size:12 final size:12
Alignment explanation
Indices: 33221642--33221673 Score: 55
Period size: 12 Copynumber: 2.6 Consensus size: 12
33221632 CATAAAAATT
33221642 TAAACTAAGTAAA
1 TAAA-TAAGTAAA
33221655 TAAATAAGTAAA
1 TAAATAAGTAAA
33221667 TAAATAA
1 TAAATAA
33221674 AAATAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 15 0.79
13 4 0.21
ACGTcount: A:0.66, C:0.03, G:0.06, T:0.25
Consensus pattern (12 bp):
TAAATAAGTAAA
Found at i:33230508 original size:40 final size:40
Alignment explanation
Indices: 33230424--33230607 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
33230414 TTGAATGCTG
* * * *
33230424 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
33230463 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
33230504 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
33230544 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
33230584 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
33230608 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:33230561 original size:80 final size:81
Alignment explanation
Indices: 33230424--33230604 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
33230414 TTGAATGCTG
* * *
33230424 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
33230488 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
33230504 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
33230565 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
33230584 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
33230605 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:33230628 original size:39 final size:38
Alignment explanation
Indices: 33230505--33230654 Score: 131
Period size: 40 Copynumber: 3.8 Consensus size: 38
33230495 GTTATTAATT
* ** * *
33230505 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACTAA-A
** *
33230545 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-AAA
*
33230584 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTA-AA
* *
33230624 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
33230655 GAGCTAAATC
Statistics
Matches: 93, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
39 30 0.32
40 63 0.68
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAAA
Found at i:33234221 original size:28 final size:27
Alignment explanation
Indices: 33234185--33234304 Score: 123
Period size: 28 Copynumber: 4.3 Consensus size: 27
33234175 CAGTAATAGT
* *
33234185 ACAGTGTGGGCCTTAGCCTGATCCAGTA
1 ACAGTGTGGGCCTTAGCC-AATACAGTA
* * *
33234213 ACAATGTGGGCTTTAGCCCAATACAGAA
1 ACAGTGTGGGCCTTAG-CCAATACAGTA
* * *
33234241 ACCGTGTGGGCCTTAGCCCATTACAATA
1 ACAGTGTGGGCCTTAG-CCAATACAGTA
*
33234269 ACAGTGTGGGCCTTAGCCCAATACAGAA
1 ACAGTGTGGGCCTTAG-CCAATACAGTA
33234297 ACAGTGTG
1 ACAGTGTG
33234305 ATAATGCAAC
Statistics
Matches: 76, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
28 74 0.97
29 2 0.03
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.23
Consensus pattern (27 bp):
ACAGTGTGGGCCTTAGCCAATACAGTA
Found at i:33234256 original size:56 final size:56
Alignment explanation
Indices: 33234185--33234304 Score: 170
Period size: 56 Copynumber: 2.1 Consensus size: 56
33234175 CAGTAATAGT
* * * *
33234185 ACAGTGTGGGCCTTAGCCTGA-TCCAGTAACAATGTGGGCTTTAGCCCAATACAGAA
1 ACAGTGTGGGCCTTAGCC-CATTACAATAACAATGTGGGCCTTAGCCCAATACAGAA
* *
33234241 ACCGTGTGGGCCTTAGCCCATTACAATAACAGTGTGGGCCTTAGCCCAATACAGAA
1 ACAGTGTGGGCCTTAGCCCATTACAATAACAATGTGGGCCTTAGCCCAATACAGAA
33234297 ACAGTGTG
1 ACAGTGTG
33234305 ATAATGCAAC
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
55 1 0.02
56 55 0.98
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.23
Consensus pattern (56 bp):
ACAGTGTGGGCCTTAGCCCATTACAATAACAATGTGGGCCTTAGCCCAATACAGAA
Found at i:33234646 original size:27 final size:27
Alignment explanation
Indices: 33234616--33234675 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
33234606 AATCTTCTAG
33234616 GGGTATAAT-GGTCATTTTACCCTATGA
1 GGGTAT-ATCGGTCATTTTACCCTATGA
* * *
33234643 GGGTATTTCTGTCATTTTACCCTATGG
1 GGGTATATCGGTCATTTTACCCTATGA
33234670 GGGTAT
1 GGGTAT
33234676 TTCAATCATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 1 0.03
27 28 0.97
ACGTcount: A:0.20, C:0.15, G:0.25, T:0.40
Consensus pattern (27 bp):
GGGTATATCGGTCATTTTACCCTATGA
Found at i:33234676 original size:27 final size:27
Alignment explanation
Indices: 33234626--33234688 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
33234616 GGGTATAATG
*
33234626 GTCATTTTACCCTATGAGGGTATTTCT
1 GTCATTTTACCCTATGAGGGTATTTCA
*
33234653 GTCATTTTACCCTATGGGGGTATTTCA
1 GTCATTTTACCCTATGAGGGTATTTCA
*
33234680 ATCATTTTA
1 GTCATTTTA
33234689 TTTGGTCTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.21, C:0.17, G:0.17, T:0.44
Consensus pattern (27 bp):
GTCATTTTACCCTATGAGGGTATTTCA
Found at i:33234741 original size:67 final size:67
Alignment explanation
Indices: 33234624--33234755 Score: 180
Period size: 67 Copynumber: 2.0 Consensus size: 67
33234614 AGGGGTATAA
* *
33234624 TGGTCATTTTACCCTATGAGGGTATTTCTGTCATTTTACCCTATGGGGGTATTTCAATCATTTTA
1 TGGTCATTTTACCCTATAAGGGTATTTCTGTCATTTTACCCTATGAGGGTATTTCAATCATTTTA
33234689 TT
66 TT
* *
33234691 TGGTCTTTTTACCCT-TCAAGGGTATTTC-GATCATTTTA-CCTTTCGAGGGTATTTCAATCATT
1 TGGTCATTTTACCCTAT-AAGGGTATTTCTG-TCATTTTACCCTAT-GAGGGTATTTCAATCATT
33234753 TTA
63 TTA
33234756 CCTTTTGGGG
Statistics
Matches: 58, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
66 6 0.10
67 52 0.90
ACGTcount: A:0.20, C:0.17, G:0.17, T:0.46
Consensus pattern (67 bp):
TGGTCATTTTACCCTATAAGGGTATTTCTGTCATTTTACCCTATGAGGGTATTTCAATCATTTTA
TT
Found at i:33234835 original size:81 final size:80
Alignment explanation
Indices: 33234697--33234915 Score: 264
Period size: 81 Copynumber: 2.7 Consensus size: 80
33234687 TATTTGGTCT
* * * * * *
33234697 TTTTACCCTTCAAGGGTATTTCGATCATTTTACCTTTCGAGGGTATTTCAATCATTTTACCTTTT
1 TTTTACCTTTCAAGGGTATTTCG-TCATTTTACCCTTCGAGGGTATTTCAGTTATTTTACCCTAT
*
33234762 GGGGGTATTTCTA-TCA
65 GAGGGTATTTC-AGTCA
*
33234778 TTTTACCTTTTAAGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCAGTTATTTTACCCTAT
1 TTTTACCTTTCAAGGGTATTTC-GTCATTTTACCCTTCGAGGGTATTTCAGTTATTTTACCCTAT
33234843 GAGGGTATTTCAGTCA
65 GAGGGTATTTCAGTCA
* * *
33234859 TTTTA-CTGTTCAGGGGTATTTCGGCCATTTTACCCTTCGGGGGTATTTC-GATTATTT
1 TTTTACCT-TTCAAGGGTATTTC-GTCATTTTACCCTTCGAGGGTATTTCAG-TTATTT
33234916 GCCCACAAAT
Statistics
Matches: 121, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
80 4 0.03
81 116 0.96
82 1 0.01
ACGTcount: A:0.19, C:0.18, G:0.18, T:0.45
Consensus pattern (80 bp):
TTTTACCTTTCAAGGGTATTTCGTCATTTTACCCTTCGAGGGTATTTCAGTTATTTTACCCTATG
AGGGTATTTCAGTCA
Found at i:33234908 original size:27 final size:27
Alignment explanation
Indices: 33234697--33234907 Score: 223
Period size: 27 Copynumber: 7.8 Consensus size: 27
33234687 TATTTGGTCT
*
33234697 TTTTACCCTTCAAGGGTATTTC-GATCA
1 TTTTACCCTTCGAGGGTATTTCAG-TCA
* *
33234724 TTTTACCTTTCGAGGGTATTTCAATCA
1 TTTTACCCTTCGAGGGTATTTCAGTCA
* * *
33234751 TTTTACCTTTTGGGGGTATTTCTA-TCA
1 TTTTACCCTTCGAGGGTATTTC-AGTCA
* **
33234778 TTTTACCTTTTAAGGGTATTTCAGTCA
1 TTTTACCCTTCGAGGGTATTTCAGTCA
*
33234805 TTTTACCCTTCGAGGGTATTTCAGTTA
1 TTTTACCCTTCGAGGGTATTTCAGTCA
33234832 TTTTACCCTAT-GAGGGTATTTCAGTCA
1 TTTTACCCT-TCGAGGGTATTTCAGTCA
** * *
33234859 TTTTACTGTTC-AGGGGTATTTCGGCCA
1 TTTTACCCTTCGA-GGGTATTTCAGTCA
*
33234886 TTTTACCCTTCGGGGGTATTTC
1 TTTTACCCTTCGAGGGTATTTC
33234908 GATTATTTGC
Statistics
Matches: 158, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
26 3 0.02
27 153 0.97
28 2 0.01
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.45
Consensus pattern (27 bp):
TTTTACCCTTCGAGGGTATTTCAGTCA
Found at i:33243232 original size:27 final size:27
Alignment explanation
Indices: 33243197--33243255 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
33243187 CATGTTGCAT
33243197 GCCCATGTGGGCCCACAAGCCTATGTG
1 GCCCATGTGGGCCCACAAGCCTATGTG
33243224 GCCCATGTGGGCCCACAAGCCTATGTG
1 GCCCATGTGGGCCCACAAGCCTATGTG
33243251 GCCCA
1 GCCCA
33243256 CACGGCCCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.19, C:0.36, G:0.29, T:0.17
Consensus pattern (27 bp):
GCCCATGTGGGCCCACAAGCCTATGTG
Found at i:33252698 original size:94 final size:94
Alignment explanation
Indices: 33252588--33252762 Score: 332
Period size: 94 Copynumber: 1.9 Consensus size: 94
33252578 GATAAAAAGG
*
33252588 GGATTTGATATATTCCTTATCAGATAAGGAAATATAATTTAATTATTATTTAAAAGAGTTTTAAA
1 GGATTTGATATATTCCTTATCAGATAAGAAAATATAATTTAATTATTATTTAAAAGAGTTTTAAA
33252653 TAAATAATAATTAAAATTCAAAATCAAAA
66 TAAATAATAATTAAAATTCAAAATCAAAA
*
33252682 GGATTTGATATATTCCTTATCAGATAAGAAAATATAATTTAATTATTATTTAAAAGAGTTTTAGA
1 GGATTTGATATATTCCTTATCAGATAAGAAAATATAATTTAATTATTATTTAAAAGAGTTTTAAA
33252747 TAAATAATAATTAAAA
66 TAAATAATAATTAAAA
33252763 CAGAATTTAA
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 79 1.00
ACGTcount: A:0.48, C:0.05, G:0.09, T:0.38
Consensus pattern (94 bp):
GGATTTGATATATTCCTTATCAGATAAGAAAATATAATTTAATTATTATTTAAAAGAGTTTTAAA
TAAATAATAATTAAAATTCAAAATCAAAA
Found at i:33274824 original size:11 final size:11
Alignment explanation
Indices: 33274808--33274851 Score: 61
Period size: 13 Copynumber: 3.7 Consensus size: 11
33274798 ACTAGCTCTC
33274808 TTTTTTTTCAA
1 TTTTTTTTCAA
33274819 TTTTTTTTCACAA
1 TTTTTTTT--CAA
33274832 TTTTTTTTCAAA
1 TTTTTTTTC-AA
33274844 TTTTTTTT
1 TTTTTTTT
33274852 TTCACAACTT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
11 9 0.30
12 10 0.33
13 11 0.37
ACGTcount: A:0.18, C:0.09, G:0.00, T:0.73
Consensus pattern (11 bp):
TTTTTTTTCAA
Found at i:33274876 original size:27 final size:27
Alignment explanation
Indices: 33274819--33274876 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
33274809 TTTTTTTCAA
* ** * *
33274819 TTTTTTTTCACAATTTTTTTTCAAATT
1 TTTTTTTTCACAACTTGATATCAAATC
*
33274846 TTTTTTTTCACAACTTGATATCCAATC
1 TTTTTTTTCACAACTTGATATCAAATC
33274873 TTTT
1 TTTT
33274877 AAGTTTGAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.22, C:0.16, G:0.02, T:0.60
Consensus pattern (27 bp):
TTTTTTTTCACAACTTGATATCAAATC
Found at i:33277499 original size:25 final size:25
Alignment explanation
Indices: 33277463--33277530 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
33277453 AGAGAGCAGA
33277463 ATTT-TCT-TTGAGTTTTCTCCAAG
1 ATTTCTCTCTTGAGTTTTCTCCAAG
33277486 ATTTCTCTCTTGAGTTTTCTCCAAG
1 ATTTCTCTCTTGAGTTTTCTCCAAG
33277511 ATTTCTCTCTTGAGTTTTCT
1 ATTTCTCTCTTGAGTTTTCT
33277531 TTAGAAGTTG
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
23 4 0.09
24 3 0.07
25 36 0.84
ACGTcount: A:0.15, C:0.21, G:0.12, T:0.53
Consensus pattern (25 bp):
ATTTCTCTCTTGAGTTTTCTCCAAG
Found at i:33277713 original size:28 final size:29
Alignment explanation
Indices: 33277676--33277737 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
33277666 GGACTTATCT
33277676 TTTA-TTCTTGCTG-TTCAATTTCT-TTTC
1 TTTATTTCTTGCTGTTTC-ATTTCTATTTC
* *
33277703 TTTATTTCTTGTTGTTTCATTTTTATTTC
1 TTTATTTCTTGCTGTTTCATTTCTATTTC
33277732 TTTATT
1 TTTATT
33277738 CCTACTTGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 4 0.13
28 13 0.43
29 13 0.43
ACGTcount: A:0.11, C:0.13, G:0.06, T:0.69
Consensus pattern (29 bp):
TTTATTTCTTGCTGTTTCATTTCTATTTC
Found at i:33278415 original size:18 final size:16
Alignment explanation
Indices: 33278392--33278434 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 16
33278382 AAAAAATCAG
33278392 TCAAAAAAGTCAAAAAAA
1 TCAAAAAA-T-AAAAAAA
*
33278410 TCAAAAAATAAAAAAT
1 TCAAAAAATAAAAAAA
33278426 TCAATAAAA
1 TCAA-AAAA
33278435 ATTTAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 10 0.43
17 5 0.22
18 8 0.35
ACGTcount: A:0.72, C:0.09, G:0.02, T:0.16
Consensus pattern (16 bp):
TCAAAAAATAAAAAAA
Found at i:33284159 original size:10 final size:10
Alignment explanation
Indices: 33284143--33284200 Score: 64
Period size: 10 Copynumber: 5.7 Consensus size: 10
33284133 CAACTCCGAC
33284143 CAGCTCAATT
1 CAGCTCAATT
* *
33284153 GAGCTCATTT
1 CAGCTCAATT
33284163 CAGCTCAA-T
1 CAGCTCAATT
33284172 CGAGCTCAATT
1 C-AGCTCAATT
*
33284183 TAGCTACAATT
1 CAGCT-CAATT
33284194 CAGCTCA
1 CAGCTCA
33284201 TTTATTTTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
9 2 0.05
10 27 0.69
11 10 0.26
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (10 bp):
CAGCTCAATT
Found at i:33284166 original size:20 final size:20
Alignment explanation
Indices: 33284143--33284203 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
33284133 CAACTCCGAC
33284143 CAGCTCAATTGAGCTCATTT
1 CAGCTCAATTGAGCTCATTT
*
33284163 CAGCTCAATCGAGCTCAATTT
1 CAGCTCAATTGAGCTC-ATTT
*
33284184 -AGCTACAATTCAGCTCATTT
1 CAGCT-CAATTGAGCTCATTT
33284204 ATTTTATTGG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 23 0.64
21 13 0.36
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (20 bp):
CAGCTCAATTGAGCTCATTT
Found at i:33289255 original size:43 final size:43
Alignment explanation
Indices: 33289195--33289311 Score: 119
Period size: 54 Copynumber: 2.5 Consensus size: 43
33289185 AATCACTTAT
*
33289195 TTATTAAAC-AAAGATGAGTTGAATAAATGTTCAGCAACTCAA
1 TTATTTAACTAAAGATGAGTTGAATAAATGTTCAGCAACTCAA
33289237 TTATTTAACTAAAGATGAGTTTCTTTAAAGTTGAATAAATGTTCAGCAACTCAA
1 TTATTTAACTAAAGAT--G---------AGTTGAATAAATGTTCAGCAACTCAA
33289291 TTATTTAACTAAAGATGAGTT
1 TTATTTAACTAAAGATGAGTT
33289312 TTTTTAAAAT
Statistics
Matches: 62, Mismatches: 1, Indels: 23
0.72 0.01 0.27
Matches are distributed among these distances:
42 8 0.13
43 10 0.16
45 1 0.02
52 1 0.02
54 42 0.68
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.35
Consensus pattern (43 bp):
TTATTTAACTAAAGATGAGTTGAATAAATGTTCAGCAACTCAA
Found at i:33289293 original size:54 final size:54
Alignment explanation
Indices: 33289211--33289319 Score: 209
Period size: 54 Copynumber: 2.0 Consensus size: 54
33289201 AACAAAGATG
33289211 AGTTGAATAAATGTTCAGCAACTCAATTATTTAACTAAAGATGAGTTTCTTTAA
1 AGTTGAATAAATGTTCAGCAACTCAATTATTTAACTAAAGATGAGTTTCTTTAA
*
33289265 AGTTGAATAAATGTTCAGCAACTCAATTATTTAACTAAAGATGAGTTTTTTTAA
1 AGTTGAATAAATGTTCAGCAACTCAATTATTTAACTAAAGATGAGTTTCTTTAA
33289319 A
1 A
33289320 ATTTCAGTTC
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.38
Consensus pattern (54 bp):
AGTTGAATAAATGTTCAGCAACTCAATTATTTAACTAAAGATGAGTTTCTTTAA
Found at i:33289616 original size:13 final size:13
Alignment explanation
Indices: 33289583--33289623 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
33289573 TTGTAAATTG
*
33289583 AAAAAAATTAGAA
1 AAAAAAATTTGAA
*
33289596 AAAGAAATTTGAA
1 AAAAAAATTTGAA
33289609 AAAAAAATTGTGAA
1 AAAAAAATT-TGAA
33289623 A
1 A
33289624 TCAAGTGTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
13 19 0.79
14 5 0.21
ACGTcount: A:0.68, C:0.00, G:0.12, T:0.20
Consensus pattern (13 bp):
AAAAAAATTTGAA
Found at i:33289688 original size:11 final size:10
Alignment explanation
Indices: 33289660--33289686 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
33289650 TTGTGATTTT
33289660 AAAAAAATTC
1 AAAAAAATTC
33289670 AAAAAAATTC
1 AAAAAAATTC
33289680 AAAAAAA
1 AAAAAAA
33289687 ATGTGAAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (10 bp):
AAAAAAATTC
Found at i:33297258 original size:13 final size:13
Alignment explanation
Indices: 33297240--33297264 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33297230 TCATATTTTT
33297240 TGATTTTTTTGAC
1 TGATTTTTTTGAC
33297253 TGATTTTTTTGA
1 TGATTTTTTTGA
33297265 GGGATTAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TGATTTTTTTGAC
Found at i:33299329 original size:54 final size:54
Alignment explanation
Indices: 33299266--33299374 Score: 209
Period size: 54 Copynumber: 2.0 Consensus size: 54
33299256 AACAAAGATG
*
33299266 AGTTGAATAAATGTTCAGCAACTCAATTATTTAACTAAAGATGAGTTTCTTTAA
1 AGTTGAATAAATGTTCAACAACTCAATTATTTAACTAAAGATGAGTTTCTTTAA
33299320 AGTTGAATAAATGTTCAACAACTCAATTATTTAACTAAAGATGAGTTTCTTTAA
1 AGTTGAATAAATGTTCAACAACTCAATTATTTAACTAAAGATGAGTTTCTTTAA
33299374 A
1 A
33299375 CTTTCAATTC
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (54 bp):
AGTTGAATAAATGTTCAACAACTCAATTATTTAACTAAAGATGAGTTTCTTTAA
Found at i:33303353 original size:21 final size:21
Alignment explanation
Indices: 33303328--33303368 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
33303318 ACATTCCATA
*
33303328 ACCAAACCTAAACCATATTCG
1 ACCAAACCTAAACCAAATTCG
* *
33303349 ACCAATCTTAAACCAAATTC
1 ACCAAACCTAAACCAAATTC
33303369 CTTCTATCTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.44, C:0.32, G:0.02, T:0.22
Consensus pattern (21 bp):
ACCAAACCTAAACCAAATTCG
Found at i:33305823 original size:43 final size:43
Alignment explanation
Indices: 33305763--33305879 Score: 110
Period size: 54 Copynumber: 2.5 Consensus size: 43
33305753 AATCACTTAT
* *
33305763 TTATTAAAC-AAAGATGAGTTGAATAAATGTTCGGCAACTCAA
1 TTATTTAACTAAAGATGAGTTGAATAAATGTTCAGCAACTCAA
33305805 TTATTTAACTAAAGATGAGTTTCTTTAAAGTTGAATAAATGTTCAGCAACTCAA
1 TTATTTAACTAAAGAT--G---------AGTTGAATAAATGTTCAGCAACTCAA
33305859 TTATTTAACTAAAGATGAGTT
1 TTATTTAACTAAAGATGAGTT
33305880 TTTTTAAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 23
0.71 0.02 0.27
Matches are distributed among these distances:
42 8 0.13
43 10 0.16
45 1 0.02
52 1 0.02
54 41 0.67
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (43 bp):
TTATTTAACTAAAGATGAGTTGAATAAATGTTCAGCAACTCAA
Found at i:33305861 original size:54 final size:54
Alignment explanation
Indices: 33305779--33305887 Score: 200
Period size: 54 Copynumber: 2.0 Consensus size: 54
33305769 AACAAAGATG
*
33305779 AGTTGAATAAATGTTCGGCAACTCAATTATTTAACTAAAGATGAGTTTCTTTAA
1 AGTTGAATAAATGTTCAGCAACTCAATTATTTAACTAAAGATGAGTTTCTTTAA
*
33305833 AGTTGAATAAATGTTCAGCAACTCAATTATTTAACTAAAGATGAGTTTTTTTAA
1 AGTTGAATAAATGTTCAGCAACTCAATTATTTAACTAAAGATGAGTTTCTTTAA
33305887 A
1 A
33305888 ATTTTAGTTC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.38
Consensus pattern (54 bp):
AGTTGAATAAATGTTCAGCAACTCAATTATTTAACTAAAGATGAGTTTCTTTAA
Found at i:33306185 original size:14 final size:14
Alignment explanation
Indices: 33306151--33306192 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
33306141 TTGTAAATTG
*
33306151 AAAAAAATTAG-AA
1 AAAAAAATTTGAAA
*
33306164 AAAGAAATTTGAAA
1 AAAAAAATTTGAAA
33306178 AAAAAAATTGTGAAA
1 AAAAAAATT-TGAAA
33306193 TCAAGTGTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 9 0.38
14 10 0.42
15 5 0.21
ACGTcount: A:0.69, C:0.00, G:0.12, T:0.19
Consensus pattern (14 bp):
AAAAAAATTTGAAA
Found at i:33316112 original size:17 final size:18
Alignment explanation
Indices: 33316089--33316150 Score: 76
Period size: 17 Copynumber: 3.6 Consensus size: 18
33316079 AGATTGAGAA
33316089 TGAAAAAGAAATAGAGTT
1 TGAAAAAGAAATAGAGTT
*
33316107 TG-AAAAGAAATCGAG--
1 TGAAAAAGAAATAGAGTT
*
33316122 TGAAAAAGAAAAAGAGTT
1 TGAAAAAGAAATAGAGTT
*
33316140 TGCAAAAGAAA
1 TGAAAAAGAAA
33316151 CGAGTGAAGA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
15 2 0.05
16 11 0.30
17 12 0.32
18 12 0.32
ACGTcount: A:0.58, C:0.03, G:0.23, T:0.16
Consensus pattern (18 bp):
TGAAAAAGAAATAGAGTT
Found at i:33316126 original size:33 final size:33
Alignment explanation
Indices: 33316089--33316163 Score: 116
Period size: 33 Copynumber: 2.2 Consensus size: 33
33316079 AGATTGAGAA
*
33316089 TGAAAAAGAAATAGAGTTTG-AAAAGAAATCGAG
1 TGAAAAAGAAAAAGAGTTTGCAAAAGAAA-CGAG
33316122 TGAAAAAGAAAAAGAGTTTGCAAAAGAAACGAG
1 TGAAAAAGAAAAAGAGTTTGCAAAAGAAACGAG
33316155 TGAAGAAAG
1 TGAA-AAAG
33316164 TAATCAAGAA
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
33 27 0.69
34 12 0.31
ACGTcount: A:0.56, C:0.04, G:0.25, T:0.15
Consensus pattern (33 bp):
TGAAAAAGAAAAAGAGTTTGCAAAAGAAACGAG
Found at i:33317801 original size:47 final size:47
Alignment explanation
Indices: 33317702--33317807 Score: 122
Period size: 47 Copynumber: 2.3 Consensus size: 47
33317692 CCTGAACATC
* * * * * *
33317702 TTTAATGTGTCTTGAGTTTATTAATTGTGTTTTATTTAGTACAGCAA
1 TTTAATGTGTCTTAAGTCTATTAAATATGTTCTAATTAGTACAGCAA
* * **
33317749 ATTAATATGTCTTAAGTCTATTAAATATGTTCTAATTAGTACAGCTT
1 TTTAATGTGTCTTAAGTCTATTAAATATGTTCTAATTAGTACAGCAA
33317796 TTTAATGTGTCT
1 TTTAATGTGTCT
33317808 CTAGCTAATA
Statistics
Matches: 47, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.28, C:0.08, G:0.14, T:0.49
Consensus pattern (47 bp):
TTTAATGTGTCTTAAGTCTATTAAATATGTTCTAATTAGTACAGCAA
Found at i:33318741 original size:20 final size:20
Alignment explanation
Indices: 33318695--33318741 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
33318685 AGCTCGTTTC
*
33318695 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
33318715 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
33318735 CAGCTCA
1 CAGCTCA
33318742 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:33323216 original size:20 final size:20
Alignment explanation
Indices: 33323170--33323216 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
33323160 AGCTCGTTTC
*
33323170 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
33323190 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
33323210 CAGCTCA
1 CAGCTCA
33323217 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:33326272 original size:30 final size:31
Alignment explanation
Indices: 33326215--33326274 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
33326205 ATCATGCATG
33326215 CACCTAGCTAAATGAATCTCCACATTCGGCT
1 CACCTAGCTAAATGAATCTCCACATTCGGCT
*
33326246 CACCTTGCTAAATGAA-C-CCTACATTCGGC
1 CACCTAGCTAAATGAATCTCC-ACATTCGGC
33326275 CAACCTATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 2 0.07
30 10 0.37
31 15 0.56
ACGTcount: A:0.28, C:0.33, G:0.13, T:0.25
Consensus pattern (31 bp):
CACCTAGCTAAATGAATCTCCACATTCGGCT
Found at i:33326612 original size:30 final size:30
Alignment explanation
Indices: 33326554--33326612 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
33326544 TTGAAAATGT
* *
33326554 TTGAGCTGAAGTTGAGCTAATTCGAGCTCA
1 TTGAGCTGAAATGGAGCTAATTCGAGCTCA
*
33326584 TTGAGCTGAAATGGAAGTTAATTC-AGCTC
1 TTGAGCTGAAATGG-AGCTAATTCGAGCTC
33326613 GTATTAAAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 17 0.68
31 8 0.32
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (30 bp):
TTGAGCTGAAATGGAGCTAATTCGAGCTCA
Found at i:33328324 original size:20 final size:19
Alignment explanation
Indices: 33328292--33328329 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
33328282 GAGCTAATAA
33328292 TGAGCTCAATGAGCTGAAT
1 TGAGCTCAATGAGCTGAAT
*
33328311 TGAGCTCAGGTGAGCTGAA
1 TGAGCTCA-ATGAGCTGAA
33328330 ATAACTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.29, C:0.16, G:0.32, T:0.24
Consensus pattern (19 bp):
TGAGCTCAATGAGCTGAAT
Found at i:33331336 original size:23 final size:22
Alignment explanation
Indices: 33331284--33331336 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
33331274 TCCACGTCTT
*
33331284 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
33331306 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
33331329 TTTCTTTT
1 TTTCTTTT
33331337 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:33336906 original size:111 final size:111
Alignment explanation
Indices: 33336712--33336933 Score: 390
Period size: 111 Copynumber: 2.0 Consensus size: 111
33336702 TTCCAATGGA
33336712 GAATGTGATCATTGCTTGCTTGGTAACCTTTAATTTGACCCATTCGTTGAGCAATTACAATTTAT
1 GAATGTGATCATTGCTTGCTTGGTAACCTTTAATTTGACCCATTCGTTGAGCAATTACAATTTAT
* *
33336777 ATGGGCTTGGGTGCTTGATAGTCGGCAAGGCAAGTTTTTCCACCAT
66 ATGGGCTCGGGTGCTTGATAGTCAGCAAGGCAAGTTTTTCCACCAT
* * * *
33336823 GAATGTGATCATTGCTTGCTTGGTAACCTTTAATTTGACCCCTTCGTTGAGCCATTGCCATTTAT
1 GAATGTGATCATTGCTTGCTTGGTAACCTTTAATTTGACCCATTCGTTGAGCAATTACAATTTAT
33336888 ATGGGCTCGGGTGCTTGATAGTCAGCAAGGCAAGTTTTTCCACCAT
66 ATGGGCTCGGGTGCTTGATAGTCAGCAAGGCAAGTTTTTCCACCAT
33336934 ATACGTGCTT
Statistics
Matches: 105, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
111 105 1.00
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.36
Consensus pattern (111 bp):
GAATGTGATCATTGCTTGCTTGGTAACCTTTAATTTGACCCATTCGTTGAGCAATTACAATTTAT
ATGGGCTCGGGTGCTTGATAGTCAGCAAGGCAAGTTTTTCCACCAT
Found at i:33339483 original size:21 final size:21
Alignment explanation
Indices: 33339433--33339496 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
33339423 ACCTCTTTGA
*
33339433 ACCATTACCAATTCGTACCAAAT
1 ACCA-TACCATTTCGTACC-AAT
*
33339456 ACCATACCATTTCCTACCAAT
1 ACCATACCATTTCGTACCAAT
*
33339477 TCCATACCATTTCGTACCAA
1 ACCATACCATTTCGTACCAA
33339497 CTCCCAAATA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
21 21 0.57
22 12 0.32
23 4 0.11
ACGTcount: A:0.34, C:0.34, G:0.03, T:0.28
Consensus pattern (21 bp):
ACCATACCATTTCGTACCAAT
Found at i:33346213 original size:21 final size:21
Alignment explanation
Indices: 33346163--33346226 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
33346153 ACCTCTTTGA
*
33346163 ACCATTACCAATTCGTACCAAAT
1 ACCA-TACCATTTCGTACC-AAT
*
33346186 ACCATACCATTTCCTACCAAT
1 ACCATACCATTTCGTACCAAT
*
33346207 TCCATACCATTTCGTACCAA
1 ACCATACCATTTCGTACCAA
33346227 CTCCCAAATA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
21 21 0.57
22 12 0.32
23 4 0.11
ACGTcount: A:0.34, C:0.34, G:0.03, T:0.28
Consensus pattern (21 bp):
ACCATACCATTTCGTACCAAT
Found at i:33351419 original size:20 final size:20
Alignment explanation
Indices: 33351387--33351464 Score: 79
Period size: 20 Copynumber: 4.0 Consensus size: 20
33351377 GAGCTAATAA
*
33351387 TGAGCTC-AATGAGCTGAAT
1 TGAGCTCGAGTGAGCTGAAT
* * *
33351406 TCAGCTCGTGTGAGCTGACT
1 TGAGCTCGAGTGAGCTGAAT
* *
33351426 TGAGCTCGAATGAACT-AACT
1 TGAGCTCGAGTGAGCTGAA-T
33351446 TGAGCTCGAGTGAGCTGAA
1 TGAGCTCGAGTGAGCTGAA
33351465 CTACATGGAA
Statistics
Matches: 45, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
19 7 0.16
20 36 0.80
21 2 0.04
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (20 bp):
TGAGCTCGAGTGAGCTGAAT
Found at i:33351438 original size:40 final size:39
Alignment explanation
Indices: 33351387--33351463 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 39
33351377 GAGCTAATAA
* *
33351387 TGAGCTCAATGAGCTGAA-TTCAGCTCGTGTGAGCTGACT
1 TGAGCTCAATGAACT-AACTTCAGCTCGAGTGAGCTGACT
*
33351426 TGAGCTCGAATGAACTAACTTGAGCTCGAGTGAGCTGA
1 TGAGCTC-AATGAACTAACTTCAGCTCGAGTGAGCTGA
33351464 ACTACATGGA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
39 9 0.27
40 24 0.73
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (39 bp):
TGAGCTCAATGAACTAACTTCAGCTCGAGTGAGCTGACT
Found at i:33354241 original size:122 final size:122
Alignment explanation
Indices: 33354024--33354271 Score: 487
Period size: 122 Copynumber: 2.0 Consensus size: 122
33354014 CATTCTTGGG
33354024 CAACCAAAGAGTTTAGAAAGAGCTTTAAATTCCCCATTGGACAGCCGAATAGACACCATGGAAAA
1 CAACCAAAGAGTTTAGAAAGAGCTTTAAATTCCCCATTGGACAGCCGAATAGACACCATGGAAAA
33354089 GAAGAATAAACGGCCAAATTTTAAAATATGTATAAATCTTTCCTTTAAATGACATAA
66 GAAGAATAAACGGCCAAATTTTAAAATATGTATAAATCTTTCCTTTAAATGACATAA
*
33354146 CAACCAAAGAGTTTAGAAAGAGCTTTAAATTCCCCATTGGACAGCCGAATAGACACCATGGAGAA
1 CAACCAAAGAGTTTAGAAAGAGCTTTAAATTCCCCATTGGACAGCCGAATAGACACCATGGAAAA
33354211 GAAGAATAAACGGCCAAATTTTAAAATATGTATAAATCTTTCCTTTAAATGACATAA
66 GAAGAATAAACGGCCAAATTTTAAAATATGTATAAATCTTTCCTTTAAATGACATAA
33354268 CAAC
1 CAAC
33354272 TCCTTTAAAT
Statistics
Matches: 125, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
122 125 1.00
ACGTcount: A:0.43, C:0.18, G:0.15, T:0.24
Consensus pattern (122 bp):
CAACCAAAGAGTTTAGAAAGAGCTTTAAATTCCCCATTGGACAGCCGAATAGACACCATGGAAAA
GAAGAATAAACGGCCAAATTTTAAAATATGTATAAATCTTTCCTTTAAATGACATAA
Found at i:33354382 original size:55 final size:54
Alignment explanation
Indices: 33354308--33354432 Score: 189
Period size: 55 Copynumber: 2.3 Consensus size: 54
33354298 CTTTAATTGA
* *
33354308 TGTAACAACCCTTTATATGTAACCGATTCCAACTG-GTTAGCCACATTTAACACTT
1 TGTAACAGCCC-TTGTATGTAACCGATTCCAACTGAG-TAGCCACATTTAACACTT
*
33354363 TGTAACAGGCCCTTGTATGTAACCGATTCCAACTGAGTAGTCACATTTAACACTT
1 TGTAACA-GCCCTTGTATGTAACCGATTCCAACTGAGTAGCCACATTTAACACTT
33354418 TGTAACAGCCCTTGT
1 TGTAACAGCCCTTGT
33354433 TCATAATTTT
Statistics
Matches: 65, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
54 8 0.12
55 53 0.82
56 4 0.06
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (54 bp):
TGTAACAGCCCTTGTATGTAACCGATTCCAACTGAGTAGCCACATTTAACACTT
Found at i:33354493 original size:10 final size:10
Alignment explanation
Indices: 33354471--33354504 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
33354461 CCTACAATCA
33354471 AAACACA-TT
1 AAACACATTT
33354480 AAACACATTT
1 AAACACATTT
33354490 AAACACATATT
1 AAACACAT-TT
33354501 AAAC
1 AAAC
33354505 TTAATAAGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 7 0.30
10 10 0.43
11 6 0.26
ACGTcount: A:0.56, C:0.21, G:0.00, T:0.24
Consensus pattern (10 bp):
AAACACATTT
Found at i:33367612 original size:23 final size:22
Alignment explanation
Indices: 33367561--33367612 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
33367551 CCTCGTCTTT
*
33367561 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
33367583 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
33367606 TTCTTTT
1 TTCTTTT
33367613 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:33370803 original size:46 final size:46
Alignment explanation
Indices: 33370736--33370829 Score: 161
Period size: 46 Copynumber: 2.0 Consensus size: 46
33370726 ATTGTGTGGC
*
33370736 GTTCATCATATACCAAGGTTCCTACCATCCTTGATAGTGGGTCGAG
1 GTTCATCATATACCAAGGTTCCTACCATCCTTGATAGTGGGACGAG
* *
33370782 GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGACGAG
1 GTTCATCATATACCAAGGTTCCTACCATCCTTGATAGTGGGACGAG
33370828 GT
1 GT
33370830 CTTTTCTTTG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.32
Consensus pattern (46 bp):
GTTCATCATATACCAAGGTTCCTACCATCCTTGATAGTGGGACGAG
Found at i:33371207 original size:21 final size:23
Alignment explanation
Indices: 33371173--33371233 Score: 63
Period size: 24 Copynumber: 2.7 Consensus size: 23
33371163 ACTGTCGAAT
* *
33371173 TTTAAAGGACGTAACA-G-CTCC
1 TTTAAATGATGTAACATGCCTCC
*
33371194 TTTAAATGATGTAAAATGCTCTCC
1 TTTAAATGATGTAACATGC-CTCC
*
33371218 TTTAATTGATGTAACA
1 TTTAAATGATGTAACA
33371234 AGCCCTTGTA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
21 13 0.41
22 1 0.03
24 18 0.56
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.34
Consensus pattern (23 bp):
TTTAAATGATGTAACATGCCTCC
Found at i:33371542 original size:38 final size:38
Alignment explanation
Indices: 33371500--33371600 Score: 184
Period size: 38 Copynumber: 2.7 Consensus size: 38
33371490 GCCGAACAAT
33371500 TCAATTATTAACTAAGATGAGTTTAATAATCCAGCAAC
1 TCAATTATTAACTAAGATGAGTTTAATAATCCAGCAAC
*
33371538 TCAATTATTAACTAAGATGAGTTTAATAATCCAGTAAC
1 TCAATTATTAACTAAGATGAGTTTAATAATCCAGCAAC
*
33371576 TTAATTATTAACTAAGATGAGTTTA
1 TCAATTATTAACTAAGATGAGTTTA
33371601 TTAAAATTGA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 61 1.00
ACGTcount: A:0.42, C:0.12, G:0.11, T:0.36
Consensus pattern (38 bp):
TCAATTATTAACTAAGATGAGTTTAATAATCCAGCAAC
Found at i:33374919 original size:17 final size:18
Alignment explanation
Indices: 33374887--33374920 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
33374877 AGAAAAGAAA
33374887 ATTGAAAAAGAAATTGAG
1 ATTGAAAAAGAAATTGAG
*
33374905 ATTGAGAAA-AAATTGA
1 ATTGAAAAAGAAATTGA
33374921 AAAAGAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.56, C:0.00, G:0.21, T:0.24
Consensus pattern (18 bp):
ATTGAAAAAGAAATTGAG
Found at i:33379339 original size:24 final size:25
Alignment explanation
Indices: 33379286--33379339 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 25
33379276 AACAAATTCT
* *
33379286 TTTTTTCATTTTCATCACTCGTTTC
1 TTTTTTCATTTTAATCACTCGTCTC
33379311 -TTTTTC-TTTTGAATCACTC-TCTC
1 TTTTTTCATTTT-AATCACTCGTCTC
33379334 TTTTTT
1 TTTTTT
33379340 TATCACTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 7 0.28
24 18 0.72
ACGTcount: A:0.11, C:0.22, G:0.04, T:0.63
Consensus pattern (25 bp):
TTTTTTCATTTTAATCACTCGTCTC
Found at i:33381619 original size:15 final size:14
Alignment explanation
Indices: 33381590--33381618 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
33381580 CTAGACCGTA
33381590 TGCAATTTTTTTTT
1 TGCAATTTTTTTTT
33381604 TGCAATTTTTTTTT
1 TGCAATTTTTTTTT
33381618 T
1 T
33381619 TTTTTCGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.72
Consensus pattern (14 bp):
TGCAATTTTTTTTT
Found at i:33381619 original size:19 final size:18
Alignment explanation
Indices: 33381595--33381635 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
33381585 CCGTATGCAA
*
33381595 TTTTTTTTTTGCAATTTT
1 TTTTTTTTTTTCAATTTT
*
33381613 TTTTTTTTTTTCGATTTT
1 TTTTTTTTTTTCAATTTT
33381631 TTTTT
1 TTTTT
33381636 CAAAACTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.07, C:0.05, G:0.05, T:0.83
Consensus pattern (18 bp):
TTTTTTTTTTTCAATTTT
Found at i:33388739 original size:33 final size:33
Alignment explanation
Indices: 33388702--33388797 Score: 102
Period size: 33 Copynumber: 3.2 Consensus size: 33
33388692 TGAGTTAATG
*
33388702 CATGACTTAATTTAATGATGCAAACTTTACTAA
1 CATGACTTAATTTAATGATGCAAACTTAACTAA
*
33388735 CATGA---AATTT-A-CAT---AA-TTAAACTAA
1 CATGACTTAATTTAATGATGCAAACTT-AACTAA
33388760 CATGACTTAATTTAATGATGCAAACTTAACTAA
1 CATGACTTAATTTAATGATGCAAACTTAACTAA
33388793 CATGA
1 CATGA
33388798 AAGTTACATA
Statistics
Matches: 50, Mismatches: 3, Indels: 20
0.68 0.04 0.27
Matches are distributed among these distances:
24 2 0.04
25 12 0.24
28 7 0.14
29 2 0.04
30 7 0.14
33 18 0.36
34 2 0.04
ACGTcount: A:0.44, C:0.15, G:0.08, T:0.33
Consensus pattern (33 bp):
CATGACTTAATTTAATGATGCAAACTTAACTAA
Found at i:33388889 original size:9 final size:9
Alignment explanation
Indices: 33388875--33388900 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
33388865 TTAAAACACA
33388875 AACTAAAAT
1 AACTAAAAT
33388884 AACTAAAAT
1 AACTAAAAT
33388893 AACTAAAA
1 AACTAAAA
33388901 ATTAATGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.69, C:0.12, G:0.00, T:0.19
Consensus pattern (9 bp):
AACTAAAAT
Found at i:33395438 original size:25 final size:25
Alignment explanation
Indices: 33395402--33395462 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 25
33395392 CTCCTAAATT
*
33395402 TTAATTTAATTATCTAAT-TTTTCA-A
1 TTAATTAAATTAT-TAATATTTT-ATA
*
33395427 TTTATTAAATTATTAATATTTTATA
1 TTAATTAAATTATTAATATTTTATA
33395452 TTAATTAAATT
1 TTAATTAAATT
33395463 TTTGAGAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
24 5 0.16
25 26 0.84
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.57
Consensus pattern (25 bp):
TTAATTAAATTATTAATATTTTATA
Found at i:33396127 original size:58 final size:58
Alignment explanation
Indices: 33396037--33396154 Score: 236
Period size: 58 Copynumber: 2.0 Consensus size: 58
33396027 TCATCTGATT
33396037 TAGCCTTATGCCTAGCTCACATAGGACTACAATCTCATTAGAGTGAATGGTCTTATCA
1 TAGCCTTATGCCTAGCTCACATAGGACTACAATCTCATTAGAGTGAATGGTCTTATCA
33396095 TAGCCTTATGCCTAGCTCACATAGGACTACAATCTCATTAGAGTGAATGGTCTTATCA
1 TAGCCTTATGCCTAGCTCACATAGGACTACAATCTCATTAGAGTGAATGGTCTTATCA
33396153 TA
1 TA
33396155 CTCGATTTTA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 60 1.00
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (58 bp):
TAGCCTTATGCCTAGCTCACATAGGACTACAATCTCATTAGAGTGAATGGTCTTATCA
Found at i:33405188 original size:35 final size:35
Alignment explanation
Indices: 33405142--33405213 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
33405132 TAGCTGAGTG
33405142 TTAGATTAGTAACGGTATCTGACGATACATTTGTC
1 TTAGATTAGTAACGGTATCTGACGATACATTTGTC
33405177 TTAGATTAGTAACGGTATCTGACGATACATTTGTC
1 TTAGATTAGTAACGGTATCTGACGATACATTTGTC
33405212 TT
1 TT
33405214 GCATAACTTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (35 bp):
TTAGATTAGTAACGGTATCTGACGATACATTTGTC
Found at i:33406289 original size:10 final size:10
Alignment explanation
Indices: 33406276--33406313 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
33406266 ATCTCACTTG
*
33406276 AGCTCAAGTC
1 AGCTCAATTC
33406286 AGCTC-ATTC
1 AGCTCAATTC
33406295 GAGCTCAATTC
1 -AGCTCAATTC
33406306 AGCTCAAT
1 AGCTCAAT
33406314 CTTAACCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 3 0.12
10 18 0.72
11 4 0.16
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (10 bp):
AGCTCAATTC
Found at i:33407858 original size:12 final size:12
Alignment explanation
Indices: 33407841--33407867 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
33407831 CAAAAAAATC
33407841 AAAATTCAAAAA
1 AAAATTCAAAAA
33407853 AAAATTCAAAAA
1 AAAATTCAAAAA
33407865 AAA
1 AAA
33407868 TAAAAAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (12 bp):
AAAATTCAAAAA
Found at i:33408995 original size:15 final size:15
Alignment explanation
Indices: 33408970--33409016 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
33408960 AGAAAATAAT
33408970 AAAGAAAATGAAAATG
1 AAAG-AAATGAAAATG
*
33408986 AAAGAAATGAAAAAG
1 AAAGAAATGAAAATG
33409001 AAA-AATATGAAAATG
1 AAAGAA-ATGAAAATG
33409016 A
1 A
33409017 GATTTCAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
14 2 0.07
15 22 0.79
16 4 0.14
ACGTcount: A:0.70, C:0.00, G:0.17, T:0.13
Consensus pattern (15 bp):
AAAGAAATGAAAATG
Found at i:33409076 original size:36 final size:36
Alignment explanation
Indices: 33409028--33409112 Score: 107
Period size: 36 Copynumber: 2.2 Consensus size: 36
33409018 ATTTCAAAAA
*
33409028 TAAAAGAGAGAGAAAAGCAAAAAGAGATAGAAAAAGAAAT
1 TAAAAGAGA-AGAAAA--AGAAAGAG-TAGAAAAAGAAAT
*
33409068 TAAAAGAGAAGAAAAAGAAAGAGTGGAAAAAGAAAT
1 TAAAAGAGAAGAAAAAGAAAGAGTAGAAAAAGAAAT
*
33409104 TGAAAGAGA
1 TAAAAGAGA
33409113 GCTTGAAAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
36 20 0.48
37 7 0.17
39 6 0.14
40 9 0.21
ACGTcount: A:0.66, C:0.01, G:0.25, T:0.08
Consensus pattern (36 bp):
TAAAAGAGAAGAAAAAGAAAGAGTAGAAAAAGAAAT
Found at i:33409083 original size:22 final size:22
Alignment explanation
Indices: 33409047--33409087 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
33409037 GAGAAAAGCA
33409047 AAAAGAGATAGAAAAAGAAATT
1 AAAAGAGATAGAAAAAGAAATT
33409069 AAAAGAGA-AGAAAAAGAAA
1 AAAAGAGATAGAAAAAGAAA
33409088 GAGTGGAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.73, C:0.00, G:0.20, T:0.07
Consensus pattern (22 bp):
AAAAGAGATAGAAAAAGAAATT
Found at i:33411022 original size:10 final size:10
Alignment explanation
Indices: 33411009--33411046 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
33410999 ATCTCACTTG
*
33411009 AGCTCAAGTC
1 AGCTCAATTC
33411019 AGCTC-ATTC
1 AGCTCAATTC
33411028 GAGCTCAATTC
1 -AGCTCAATTC
33411039 AGCTCAAT
1 AGCTCAAT
33411047 CTTAACCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 3 0.12
10 18 0.72
11 4 0.16
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (10 bp):
AGCTCAATTC
Found at i:33413950 original size:20 final size:20
Alignment explanation
Indices: 33413925--33413963 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
33413915 TTACTTCTTC
33413925 TTTACTTACTCTCTTACTTG
1 TTTACTTACTCTCTTACTTG
*
33413945 TTTACTTACTTTCTTACTT
1 TTTACTTACTCTCTTACTT
33413964 AAATAACTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.15, C:0.23, G:0.03, T:0.59
Consensus pattern (20 bp):
TTTACTTACTCTCTTACTTG
Found at i:33416737 original size:11 final size:12
Alignment explanation
Indices: 33416714--33416751 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
33416704 AAAAGAGAAG
33416714 AAATTCAAAAAA
1 AAATTCAAAAAA
33416726 AAATTCAAAAAAA
1 AAATTC-AAAAAA
*
33416739 AAATTGAAAAAA
1 AAATTCAAAAAA
33416751 A
1 A
33416752 GGAAAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 13 0.54
13 11 0.46
ACGTcount: A:0.76, C:0.05, G:0.03, T:0.16
Consensus pattern (12 bp):
AAATTCAAAAAA
Found at i:33416738 original size:13 final size:13
Alignment explanation
Indices: 33416714--33416751 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
33416704 AAAAGAGAAG
33416714 AAATTC-AAAAAA
1 AAATTCAAAAAAA
33416726 AAATTCAAAAAAA
1 AAATTCAAAAAAA
*
33416739 AAATTGAAAAAAA
1 AAATTCAAAAAAA
33416752 GGAAAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 6 0.25
13 18 0.75
ACGTcount: A:0.76, C:0.05, G:0.03, T:0.16
Consensus pattern (13 bp):
AAATTCAAAAAAA
Found at i:33417838 original size:11 final size:11
Alignment explanation
Indices: 33417822--33417857 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
33417812 AAAGAAATTG
33417822 AAAGAAAACGA
1 AAAGAAAACGA
33417833 AAAGAAAACGAA
1 AAAGAAAACG-A
*
33417845 AAAGAAAAAGA
1 AAAGAAAACGA
33417856 AA
1 AA
33417858 TTGCCAAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 13 0.57
12 10 0.43
ACGTcount: A:0.78, C:0.06, G:0.17, T:0.00
Consensus pattern (11 bp):
AAAGAAAACGA
Found at i:33417849 original size:12 final size:12
Alignment explanation
Indices: 33417822--33417857 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
33417812 AAAGAAATTG
33417822 AAAGAAAACG-A
1 AAAGAAAACGAA
33417833 AAAGAAAACGAA
1 AAAGAAAACGAA
*
33417845 AAAGAAAAAGAA
1 AAAGAAAACGAA
33417857 A
1 A
33417858 TTGCCAAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 10 0.43
12 13 0.57
ACGTcount: A:0.78, C:0.06, G:0.17, T:0.00
Consensus pattern (12 bp):
AAAGAAAACGAA
Found at i:33417935 original size:18 final size:18
Alignment explanation
Indices: 33417914--33417948 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
33417904 AGAAAAGAAA
33417914 ATTGA-AAAAGAAATTGAG
1 ATTGAGAAAA-AAATTGAG
33417932 ATTGAGAAAAAAATTGA
1 ATTGAGAAAAAAATTGA
33417949 AAAAGAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.23
Consensus pattern (18 bp):
ATTGAGAAAAAAATTGAG
Found at i:33423786 original size:17 final size:18
Alignment explanation
Indices: 33423749--33423786 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
33423739 GATTGAGAGT
* *
33423749 GAAAAGGAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
33423767 GAAAAGAAAT-TGAAAAA
1 GAAAAGAAATGTGAAAAA
33423784 GAA
1 GAA
33423787 GTTGAAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.63, C:0.03, G:0.24, T:0.11
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Found at i:33423799 original size:13 final size:12
Alignment explanation
Indices: 33423768--33423822 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
33423758 TGTGAAACAG
*
33423768 AAAAGAAATTGA
1 AAAAGAAGTTGA
33423780 AAAAGAAGTTGA
1 AAAAGAAGTTGA
*
33423792 AGAAAGAAG-AGA
1 A-AAAGAAGTTGA
*
33423804 AAATG-AGTTAGA
1 AAAAGAAGTT-GA
33423816 AAAAGAA
1 AAAAGAA
33423823 ACAAAAGAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 2 0.06
11 3 0.09
12 21 0.62
13 8 0.24
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.13
Consensus pattern (12 bp):
AAAAGAAGTTGA
Found at i:33434897 original size:14 final size:15
Alignment explanation
Indices: 33434878--33434910 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
33434868 AAATGAAGGC
33434878 AAAAGA-ACAAAAAG
1 AAAAGATACAAAAAG
*
33434892 AAAAGATAGAAAAAG
1 AAAAGATACAAAAAG
33434907 AAAA
1 AAAA
33434911 AAAGAGTGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.79, C:0.03, G:0.15, T:0.03
Consensus pattern (15 bp):
AAAAGATACAAAAAG
Found at i:33434902 original size:18 final size:20
Alignment explanation
Indices: 33434881--33434941 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 20
33434871 TGAAGGCAAA
33434881 AGAACAAAAAGAAAAGA-T-
1 AGAACAAAAAGAAAAGAGTG
*
33434899 AGAA-AAAGAAAAAAAGAGTG
1 AGAACAAA-AAGAAAAGAGTG
33434919 AGAAAACAAAAAGAAAA-AGTG
1 AG--AACAAAAAGAAAAGAGTG
33434940 AG
1 AG
33434942 TTGAAATTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
17 3 0.09
18 12 0.34
19 1 0.03
20 2 0.06
21 6 0.17
22 8 0.23
23 3 0.09
ACGTcount: A:0.70, C:0.03, G:0.21, T:0.05
Consensus pattern (20 bp):
AGAACAAAAAGAAAAGAGTG
Found at i:33434941 original size:21 final size:21
Alignment explanation
Indices: 33434883--33434941 Score: 63
Period size: 20 Copynumber: 2.9 Consensus size: 21
33434873 AAGGCAAAAG
33434883 AACAAAAAG-AAAAGAT-AGAA
1 AACAAAAAGAAAAAG-TGAGAA
*
33434903 AA-AGAAAA-AAAGAGTGAGAA
1 AACA-AAAAGAAAAAGTGAGAA
33434923 AACAAAAAGAAAAAGTGAG
1 AACAAAAAGAAAAAGTGAG
33434942 TTGAAATTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
19 2 0.06
20 20 0.62
21 10 0.31
ACGTcount: A:0.71, C:0.03, G:0.20, T:0.05
Consensus pattern (21 bp):
AACAAAAAGAAAAAGTGAGAA
Found at i:33442712 original size:20 final size:20
Alignment explanation
Indices: 33442687--33442725 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
33442677 TTACTTCTTC
33442687 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
33442707 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
33442726 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:33444228 original size:42 final size:43
Alignment explanation
Indices: 33444181--33444266 Score: 120
Period size: 42 Copynumber: 2.0 Consensus size: 43
33444171 TTTCGAGGTG
* *
33444181 TGATTTCATGTAAGACCTTATCTAGGACATTGGCATCG-TATA
1 TGATTTCATGTAAGACCCTATCTAGGACAGTGGCATCGATATA
* * *
33444223 TGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATA
1 TGATTTCATGTAAGACCCTATCTAGGACAGTGGCATCGATATA
33444266 T
1 T
33444267 TATAACATAT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
42 33 0.87
43 5 0.13
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (43 bp):
TGATTTCATGTAAGACCCTATCTAGGACAGTGGCATCGATATA
Found at i:33447714 original size:22 final size:22
Alignment explanation
Indices: 33447683--33447747 Score: 76
Period size: 22 Copynumber: 2.9 Consensus size: 22
33447673 ACCTTTTTGA
*
33447683 ACCATTACCAATTCGTACCAAAT
1 ACCA-TACCATTTCGTACCAAAT
* *
33447706 ACCATACCATTTCATACCAACT
1 ACCATACCATTTCGTACCAAAT
* *
33447728 TCCATACCATTTTGTACCAA
1 ACCATACCATTTCGTACCAA
33447748 TTCCCAAATA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
22 32 0.89
23 4 0.11
ACGTcount: A:0.35, C:0.32, G:0.03, T:0.29
Consensus pattern (22 bp):
ACCATACCATTTCGTACCAAAT
Done.