Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 120 of 207
Found at i:36464271 original size:50 final size:50
Alignment explanation
Indices: 36464017--36464377 Score: 141
Period size: 50 Copynumber: 7.2 Consensus size: 50
36464007 GTAGTGGAAC
* *
36464017 AGATTGAAGCT-CGACGGCGAATCTAGTTTCCCCAACATTGCAATTAAAA
1 AGATTAAAGCTACGACGGCGAATCTCGTTTCCCCAACATTGCAATTAAAA
* ** * * * *** *** ** * * ** *
36464066 AGATTGAAGCCGCAACGACGAATTTTACTTCCCTGGCGGTGTAGTGGAAC
1 AGATTAAAGCTACGACGGCGAATCTCGTTTCCCCAACATTGCAATTAAAA
* * *
36464116 AGATTGAAGCTATGACGGTGAATCTCGTTTCCCCAACATTGCAATTAAAA
1 AGATTAAAGCTACGACGGCGAATCTCGTTTCCCCAACATTGCAATTAAAA
* * * *** *** ** * * ** *
36464166 AGATTGAAGCCA-GAAACGGCGAATTTTACTTCCCTGGCGGTGTAGTGGAAC
1 AGATTAAAGCTACG--ACGGCGAATCTCGTTTCCCCAACATTGCAATTAAAA
*
36464217 AGATTAAAGCTACGACAGCGAATCTCGTTTCCCCAACATTGCAATTAAAA
1 AGATTAAAGCTACGACGGCGAATCTCGTTTCCCCAACATTGCAATTAAAA
* ** * * * *** *** * * * ** *
36464267 AGATTGAAGCCGCAAACGGTGAATTTTACTTCCCTGGCAGTGTAGTGGAAT
1 AGATTAAAGCTAC-GACGGCGAATCTCGTTTCCCCAACATTGCAATTAAAA
*
36464318 AGATTGAAGCTACGACGGCGAATCTCGTTTCCCCAACATTGCAATTAAAA
1 AGATTAAAGCTACGACGGCGAATCTCGTTTCCCCAACATTGCAATTAAAA
36464368 AGATTAAAGC
1 AGATTAAAGC
36464378 CGCAAACGGT
Statistics
Matches: 200, Mismatches: 107, Indels: 9
0.63 0.34 0.03
Matches are distributed among these distances:
49 11 0.05
50 125 0.62
51 63 0.31
52 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (50 bp):
AGATTAAAGCTACGACGGCGAATCTCGTTTCCCCAACATTGCAATTAAAA
Found at i:36464477 original size:101 final size:101
Alignment explanation
Indices: 36463985--36464471 Score: 782
Period size: 101 Copynumber: 4.8 Consensus size: 101
36463975 GCCGCAACAA
* * *
36463985 CGAATCTTACTCCCCTGGCGGTGTAGTGGAACAGATTGAAGCT-CGACGGCGAATCTAGTTTCCC
1 CGAATTTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTCGTTTCCC
*
36464049 CAACATTGCAATTAAAAAGATTGAAGCCGC-AACGA
66 CAACATTGCAATTAAAAAGATTGAAGCCGCAAACGG
* *
36464084 CGAATTTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTATGACGGTGAATCTCGTTTCCC
1 CGAATTTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTCGTTTCCC
36464149 CAACATTGCAATTAAAAAGATTGAAGCCAG-AAACGG
66 CAACATTGCAATTAAAAAGATTGAAGCC-GCAAACGG
* *
36464185 CGAATTTTACTTCCCTGGCGGTGTAGTGGAACAGATTAAAGCTACGACAGCGAATCTCGTTTCCC
1 CGAATTTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTCGTTTCCC
36464250 CAACATTGCAATTAAAAAGATTGAAGCCGCAAACGG
66 CAACATTGCAATTAAAAAGATTGAAGCCGCAAACGG
* * *
36464286 TGAATTTTACTTCCCTGGCAGTGTAGTGGAATAGATTGAAGCTACGACGGCGAATCTCGTTTCCC
1 CGAATTTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTCGTTTCCC
*
36464351 CAACATTGCAATTAAAAAGATTAAAGCCGCAAACGG
66 CAACATTGCAATTAAAAAGATTGAAGCCGCAAACGG
** * *
36464387 TAAATTTTACTTCCCTGGCGGTGTAGTGGAACAGGTTGAAGCTACGACGGCGAATCTTGTTTCCC
1 CGAATTTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTCGTTTCCC
* *
36464452 CAACATTACAATTTAAAAGA
66 CAACATTGCAATTAAAAAGA
36464472 CTAAAGATGG
Statistics
Matches: 361, Mismatches: 23, Indels: 6
0.93 0.06 0.02
Matches are distributed among these distances:
99 41 0.11
100 47 0.13
101 273 0.76
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (101 bp):
CGAATTTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTCGTTTCCC
CAACATTGCAATTAAAAAGATTGAAGCCGCAAACGG
Found at i:36465101 original size:19 final size:19
Alignment explanation
Indices: 36465077--36465134 Score: 89
Period size: 19 Copynumber: 3.0 Consensus size: 19
36465067 AATCTTCAAG
36465077 GATATGCAATCTTAAATAT
1 GATATGCAATCTTAAATAT
* *
36465096 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAAATAT
36465115 GATATGCAATCTTAGAATAT
1 GATATGCAATCTTA-AATAT
36465135 ATGATTTTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 30 0.88
20 4 0.12
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAAATAT
Found at i:36465121 original size:38 final size:41
Alignment explanation
Indices: 36465077--36465153 Score: 115
Period size: 38 Copynumber: 1.9 Consensus size: 41
36465067 AATCTTCAAG
36465077 GATATGCAATCTT-AA-ATATGA-TATGTAATCTTAGATAT
1 GATATGCAATCTTAAATATATGATTATGTAATCTTAGATAT
*
36465115 GATATGCAATCTTAGAATATATGATTTTGTAATCTTAGA
1 GATATGCAATCTTA-AATATATGATTATGTAATCTTAGA
36465154 GATTTAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 13 0.38
40 2 0.06
41 6 0.18
42 13 0.38
ACGTcount: A:0.38, C:0.08, G:0.14, T:0.40
Consensus pattern (41 bp):
GATATGCAATCTTAAATATATGATTATGTAATCTTAGATAT
Found at i:36467002 original size:17 final size:19
Alignment explanation
Indices: 36466980--36467020 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 19
36466970 GTTGAAAGGA
36466980 TTTTATAA-ATTTAT-AAT
1 TTTTATAATATTTATGAAT
*
36466997 TTTTATAATTTTTATGAAT
1 TTTTATAATATTTATGAAT
36467016 TTTTA
1 TTTTA
36467021 ATTCTTACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.38
18 5 0.24
19 8 0.38
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (19 bp):
TTTTATAATATTTATGAAT
Found at i:36467016 original size:10 final size:9
Alignment explanation
Indices: 36466980--36467020 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
36466970 GTTGAAAGGA
36466980 TTTTATAA-
1 TTTTATAAT
*
36466988 ATTTATAAT
1 TTTTATAAT
36466997 TTTTATAAT
1 TTTTATAAT
36467006 TTTTATGAAT
1 TTTTAT-AAT
36467016 TTTTA
1 TTTTA
36467021 ATTCTTACAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 7 0.24
9 14 0.48
10 8 0.28
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (9 bp):
TTTTATAAT
Found at i:36467104 original size:6 final size:6
Alignment explanation
Indices: 36467095--36467122 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
36467085 TTTTTTGTAA
36467095 ATTTAT ATTTAT ATTTAT ATTTAT ATTT
1 ATTTAT ATTTAT ATTTAT ATTTAT ATTT
36467123 TTTCTACTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
ATTTAT
Found at i:36477891 original size:11 final size:11
Alignment explanation
Indices: 36477863--36477898 Score: 63
Period size: 11 Copynumber: 3.2 Consensus size: 11
36477853 TGCAACCGGA
36477863 GGTACAATAGG
1 GGTACAATAGG
36477874 TGGTACAATAGG
1 -GGTACAATAGG
36477886 GGTACAATAGG
1 GGTACAATAGG
36477897 GG
1 GG
36477899 GGAGGTTGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 13 0.54
12 11 0.46
ACGTcount: A:0.33, C:0.08, G:0.39, T:0.19
Consensus pattern (11 bp):
GGTACAATAGG
Found at i:36477899 original size:12 final size:12
Alignment explanation
Indices: 36477863--36477899 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
36477853 TGCAACCGGA
*
36477863 GGTACAATAGGT
1 GGTACAATAGGG
36477875 GGTACAATA-GG
1 GGTACAATAGGG
36477886 GGTACAATAGGG
1 GGTACAATAGGG
36477898 GG
1 GG
36477900 GAGGTTGCTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.43
12 13 0.57
ACGTcount: A:0.32, C:0.08, G:0.41, T:0.19
Consensus pattern (12 bp):
GGTACAATAGGG
Found at i:36482782 original size:9 final size:9
Alignment explanation
Indices: 36482753--36482783 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
36482743 TGAATTTCAC
36482753 AATTCGAAT
1 AATTCGAAT
*
36482762 AACTCGAAT
1 AATTCGAAT
36482771 AATTCGAAT
1 AATTCGAAT
36482780 AATT
1 AATT
36482784 TAAATAACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.45, C:0.13, G:0.10, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:36482932 original size:19 final size:19
Alignment explanation
Indices: 36482871--36482934 Score: 69
Period size: 19 Copynumber: 3.4 Consensus size: 19
36482861 AAAATTACAA
* *
36482871 AAAAATT-AAATTAAATTTC
1 AAAAATTCAAAAT-AATTTT
36482890 AAAAATTCAAAATAATTTT
1 AAAAATTCAAAATAATTTT
*
36482909 TAAAATTCAAAAT-ATTTAT
1 AAAAATTCAAAATAATTT-T
36482928 AAAAATT
1 AAAAATT
36482935 TCAACATTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
18 4 0.10
19 31 0.79
20 4 0.10
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAAATTCAAAATAATTTT
Found at i:36483549 original size:33 final size:32
Alignment explanation
Indices: 36483508--36483607 Score: 141
Period size: 33 Copynumber: 3.2 Consensus size: 32
36483498 TTAGTTTCTA
*
36483508 ATTTATGTATCATTATATTAAATTGTTTAAAT
1 ATTTATGTATCATTATATTAAATTATTTAAAT
36483540 ATTTCATGTATCATTATATTAAATTATTTAAAT
1 ATTT-ATGTATCATTATATTAAATTATTTAAAT
* * *
36483573 A-TAATTTATCATTATATTAAATTATTT-TAT
1 ATTTATGTATCATTATATTAAATTATTTAAAT
36483603 ATTTA
1 ATTTA
36483608 ACTTTTTAGA
Statistics
Matches: 61, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
30 3 0.05
31 25 0.41
32 5 0.08
33 28 0.46
ACGTcount: A:0.39, C:0.04, G:0.03, T:0.54
Consensus pattern (32 bp):
ATTTATGTATCATTATATTAAATTATTTAAAT
Found at i:36483587 original size:21 final size:21
Alignment explanation
Indices: 36483562--36483602 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
36483552 ATTATATTAA
36483562 ATTAT-TTAAATATAATTTATC
1 ATTATATTAAAT-TAATTTATC
*
36483583 ATTATATTAAATTATTTTAT
1 ATTATATTAAATTAATTTAT
36483603 ATTTAACTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (21 bp):
ATTATATTAAATTAATTTATC
Found at i:36484654 original size:192 final size:191
Alignment explanation
Indices: 36484282--36484660 Score: 713
Period size: 192 Copynumber: 2.0 Consensus size: 191
36484272 TATAAATATT
36484282 ACACCATGTTTCTTTTGTTGTTGGAGGATTTTAAGGTAGCAAATATATCCAACTAGATTTTGCCC
1 ACACCATGTTTCTTTTGTTGTTGGAGGATTTTAAGGTAGCAAATATATCCAACTAGATTTTGCCC
36484347 CTCTATCGTATCTCTATAAGTACTTGTAGGATTTTGTACCCTTTGTATGATTGTCTTCAATGATT
66 CTCTATCGTATCTCTATAAGTACTTGTAGGATTTTGTACCCTTTGTATGATTGTCTTCAATGATT
36484412 TTTTGAATGAAAAAGCAAAATGAATAAGTAAATATTAGATCATTGATTACCTAAAGGCAAA
131 TTTTGAATGAAAAAGCAAAATGAATAAGTAAATATTAGATCATTGATTACCTAAAGGCAAA
* * *
36484473 ACACCATGTTTCTTTTGTTTTTGGAGGATTTTAAGTTAGCAAATATATTCAACTAGATTTTGCCC
1 ACACCATGTTTCTTTTGTTGTTGGAGGATTTTAAGGTAGCAAATATATCCAACTAGATTTTGCCC
36484538 CTCTATCGTATCTCTATAAGTACTTGTTAGGATTTTGTACCCTTTGTATGATTGTCTTCAATGAT
66 CTCTATCGTATCTCTATAAGTACTTG-TAGGATTTTGTACCCTTTGTATGATTGTCTTCAATGAT
*
36484603 TTTTTGAATGAAAAAGCAAAATGAATAAGTAAATATTAGCTCATTGATTACCTAAAGG
130 TTTTTGAATGAAAAAGCAAAATGAATAAGTAAATATTAGATCATTGATTACCTAAAGG
36484661 TTTGCCTAAT
Statistics
Matches: 183, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
191 88 0.48
192 95 0.52
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (191 bp):
ACACCATGTTTCTTTTGTTGTTGGAGGATTTTAAGGTAGCAAATATATCCAACTAGATTTTGCCC
CTCTATCGTATCTCTATAAGTACTTGTAGGATTTTGTACCCTTTGTATGATTGTCTTCAATGATT
TTTTGAATGAAAAAGCAAAATGAATAAGTAAATATTAGATCATTGATTACCTAAAGGCAAA
Found at i:36486892 original size:41 final size:41
Alignment explanation
Indices: 36486835--36486987 Score: 171
Period size: 41 Copynumber: 3.7 Consensus size: 41
36486825 ATGATACTCG
* * * *
36486835 GGCTTTATTCCTAGCAGGCTTTATGTCGGTGAACTATAACA
1 GGCTTTATGCCTAGCAGGCTTCATGCCGGTGAACCATAACA
* *
36486876 GGCTTTATGCCTAGCAGGCTTCATGCCGGTGTACCATATCA
1 GGCTTTATGCCTAGCAGGCTTCATGCCGGTGAACCATAACA
* * * * * *
36486917 GGCTTTATGCCTAGCAGGCTTCGTGCTGGTGTATCATATCT
1 GGCTTTATGCCTAGCAGGCTTCATGCCGGTGAACCATAACA
* * *
36486958 GGCTTTGTGCCTAGAAGGCTTTATGCCGGT
1 GGCTTTATGCCTAGCAGGCTTCATGCCGGT
36486988 CTATTTTAAT
Statistics
Matches: 97, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 97 1.00
ACGTcount: A:0.18, C:0.22, G:0.26, T:0.33
Consensus pattern (41 bp):
GGCTTTATGCCTAGCAGGCTTCATGCCGGTGAACCATAACA
Found at i:36491475 original size:20 final size:20
Alignment explanation
Indices: 36491443--36491571 Score: 114
Period size: 20 Copynumber: 6.5 Consensus size: 20
36491433 GGACAAGCCA
*
36491443 CCAGTGATGCAGATAAACTG
1 CCAGTAATGCAGATAAACTG
* * * * *
36491463 CCAGTAGTACAGACAAGCTA
1 CCAGTAATGCAGATAAACTG
*
36491483 CCAGTAATGCAGATAAATTG
1 CCAGTAATGCAGATAAACTG
* * * *
36491503 CCAGCAGTGCAGACAAGCTG
1 CCAGTAATGCAGATAAACTG
* * *
36491523 TCAATAATGCAAATAAACTG
1 CCAGTAATGCAGATAAACTG
* *
36491543 CCAATAATGCAGATAAGCTG
1 CCAGTAATGCAGATAAACTG
36491563 CCAGTAATG
1 CCAGTAATG
36491572 TTGTAACACC
Statistics
Matches: 81, Mismatches: 28, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 81 1.00
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.19
Consensus pattern (20 bp):
CCAGTAATGCAGATAAACTG
Found at i:36491493 original size:40 final size:40
Alignment explanation
Indices: 36491434--36491571 Score: 159
Period size: 40 Copynumber: 3.5 Consensus size: 40
36491424 CCAATTTATG
* * *
36491434 GACAAGCCACCAGTGATGCAGATAAACTGCCAGTAGTACA
1 GACAAGCTACCAGTAATGCAGATAAACTGCCAGTAGTGCA
* *
36491474 GACAAGCTACCAGTAATGCAGATAAATTGCCAGCAGTGCA
1 GACAAGCTACCAGTAATGCAGATAAACTGCCAGTAGTGCA
** * * * *
36491514 GACAAGCTGTCAATAATGCAAATAAACTGCCAATAATGCA
1 GACAAGCTACCAGTAATGCAGATAAACTGCCAGTAGTGCA
* *
36491554 GATAAGCTGCCAGTAATG
1 GACAAGCTACCAGTAATG
36491572 TTGTAACACC
Statistics
Matches: 82, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 82 1.00
ACGTcount: A:0.39, C:0.22, G:0.21, T:0.18
Consensus pattern (40 bp):
GACAAGCTACCAGTAATGCAGATAAACTGCCAGTAGTGCA
Found at i:36492350 original size:26 final size:26
Alignment explanation
Indices: 36492314--36492365 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
36492304 CCCTCACACC
* *
36492314 AATATTGCAGCATAGCTGCCAGTAGT
1 AATAATGCAGCAGAGCTGCCAGTAGT
*
36492340 AATAATGCAGCAGAGCTGGCAGTAGT
1 AATAATGCAGCAGAGCTGCCAGTAGT
36492366 CAGAATGGCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23
Consensus pattern (26 bp):
AATAATGCAGCAGAGCTGCCAGTAGT
Found at i:36492372 original size:26 final size:26
Alignment explanation
Indices: 36492319--36492372 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
36492309 ACACCAATAT
* *
36492319 TGCAGCATAGCTGCCAGTAGTAATAA
1 TGCAGCAGAGCTGCCAGTAGTAAGAA
* *
36492345 TGCAGCAGAGCTGGCAGTAGTCAGAA
1 TGCAGCAGAGCTGCCAGTAGTAAGAA
36492371 TG
1 TG
36492373 GCTAAGAGTC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.30, T:0.20
Consensus pattern (26 bp):
TGCAGCAGAGCTGCCAGTAGTAAGAA
Found at i:36492484 original size:32 final size:32
Alignment explanation
Indices: 36492422--36492593 Score: 161
Period size: 32 Copynumber: 5.4 Consensus size: 32
36492412 GAATAACTAC
* * * *
36492422 AAGCCATAAGTA-CAGTAATGTGATTGGCACA
1 AAGCCATCAGTAGTAGTAATATGATCGGCACA
* *
36492453 GAGCCATCAGTAGTAGTGATATGATCGGCACA
1 AAGCCATCAGTAGTAGTAATATGATCGGCACA
* * * *
36492485 CAA-CCACCAGTAATGGTAACATGATCGGCACA
1 -AAGCCATCAGTAGTAGTAATATGATCGGCACA
* * *
36492517 AAGCCTTCAGTAGCAGTGATATGATCGGCACA
1 AAGCCATCAGTAGTAGTAATATGATCGGCACA
* * *
36492549 CAA-CCATTAGTAATGGTAATATGATCGGCACA
1 -AAGCCATCAGTAGTAGTAATATGATCGGCACA
36492581 AAGCCATCAGTAG
1 AAGCCATCAGTAG
36492594 CATCGCAGTA
Statistics
Matches: 109, Mismatches: 27, Indels: 9
0.75 0.19 0.06
Matches are distributed among these distances:
31 14 0.13
32 92 0.84
33 3 0.03
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (32 bp):
AAGCCATCAGTAGTAGTAATATGATCGGCACA
Found at i:36492548 original size:64 final size:64
Alignment explanation
Indices: 36492442--36492595 Score: 245
Period size: 64 Copynumber: 2.4 Consensus size: 64
36492432 TACAGTAATG
* * *
36492442 TGATTGGCACAGAGCCATCAGTAGTAGTGATATGATCGGCACACAACCACCAGTAATGGTAACA
1 TGATCGGCACAAAGCCATCAGTAGCAGTGATATGATCGGCACACAACCACCAGTAATGGTAACA
* ** *
36492506 TGATCGGCACAAAGCCTTCAGTAGCAGTGATATGATCGGCACACAACCATTAGTAATGGTAATA
1 TGATCGGCACAAAGCCATCAGTAGCAGTGATATGATCGGCACACAACCACCAGTAATGGTAACA
36492570 TGATCGGCACAAAGCCATCAGTAGCA
1 TGATCGGCACAAAGCCATCAGTAGCA
36492596 TCGCAGTAAA
Statistics
Matches: 82, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 82 1.00
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (64 bp):
TGATCGGCACAAAGCCATCAGTAGCAGTGATATGATCGGCACACAACCACCAGTAATGGTAACA
Found at i:36492837 original size:23 final size:23
Alignment explanation
Indices: 36492767--36492848 Score: 101
Period size: 24 Copynumber: 3.5 Consensus size: 23
36492757 CCATGCTCAG
*
36492767 AATCAGCCATTCAAATCACAGACA
1 AATCAGTCATTCAAA-CACAGACA
*
36492791 AATCAGTCATACCAAACACAGACA
1 AATCAGTCAT-TCAAACACAGACA
*
36492815 AATCAGTCATTCAACCACAGACA
1 AATCAGTCATTCAAACACAGACA
* *
36492838 AAACAATCATT
1 AATCAGTCATT
36492849 TGACTTCGAG
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
23 20 0.39
24 27 0.53
25 4 0.08
ACGTcount: A:0.48, C:0.28, G:0.07, T:0.17
Consensus pattern (23 bp):
AATCAGTCATTCAAACACAGACA
Found at i:36492926 original size:27 final size:27
Alignment explanation
Indices: 36492898--36493067 Score: 128
Period size: 27 Copynumber: 6.3 Consensus size: 27
36492888 CATGACAATT
* * * *
36492898 ATTTTACTCTACAAGGGTATTATGGTT
1 ATTTTACCCTACAAGGGCATTACGGTC
* **
36492925 ATGTTACCCTACTGGGGCATTACGGTC
1 ATTTTACCCTACAAGGGCATTACGGTC
* **
36492952 ATTTTACCCTACAGGGGCATTACAATC
1 ATTTTACCCTACAAGGGCATTACGGTC
* *
36492979 ATTTTACCCTACAAGGGTATTACGATC
1 ATTTTACCCTACAAGGGCATTACGGTC
* * * * *
36493006 ATATTACCC-ATCGAGGGTATTTCGATC
1 ATTTTACCCTA-CAAGGGCATTACGGTC
* * *
36493033 ATTTTACCC-ATCGAGGGTATTTCGGTC
1 ATTTTACCCTA-CAAGGGCATTACGGTC
36493060 ATTTTACC
1 ATTTTACC
36493068 TTCAGGGGTA
Statistics
Matches: 123, Mismatches: 19, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
26 1 0.01
27 122 0.99
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (27 bp):
ATTTTACCCTACAAGGGCATTACGGTC
Found at i:36493035 original size:81 final size:81
Alignment explanation
Indices: 36492885--36493041 Score: 192
Period size: 81 Copynumber: 1.9 Consensus size: 81
36492875 TTACCCACCA
* * * * * * *
36492885 GGGCATGACAATTATTTTACTCTACAAGGGTATTATGGTTATGTTACCCTACTGGGGCATTACGG
1 GGGCATGACAATCATTTTACCCTACAAGGGTATTACGATCATATTACCCTACTGGGGCATTACGA
36492950 TCATTTTACCCTACAG
66 TCATTTTACCCTACAG
* * *
36492966 GGGCATTACAATCATTTTACCCTACAAGGGTATTACGATCATATTACCC-A-TCGAGGGTATTTC
1 GGGCATGACAATCATTTTACCCTACAAGGGTATTACGATCATATTACCCTACT-G-GGGCATTAC
36493029 GATCATTTTACCC
64 GATCATTTTACCC
36493042 ATCGAGGGTA
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
79 1 0.02
80 2 0.03
81 61 0.95
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (81 bp):
GGGCATGACAATCATTTTACCCTACAAGGGTATTACGATCATATTACCCTACTGGGGCATTACGA
TCATTTTACCCTACAG
Found at i:36496052 original size:20 final size:20
Alignment explanation
Indices: 36496027--36496075 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
36496017 AGGAGCTTTT
*
36496027 AAATCAATTTGAATAAAATC
1 AAATCAAATTGAATAAAATC
* *
36496047 AAATCAAATTGATTAGAATC
1 AAATCAAATTGAATAAAATC
36496067 AAATCAAAT
1 AAATCAAAT
36496076 CAAGATATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.55, C:0.10, G:0.06, T:0.29
Consensus pattern (20 bp):
AAATCAAATTGAATAAAATC
Found at i:36496055 original size:25 final size:25
Alignment explanation
Indices: 36496027--36496078 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
36496017 AGGAGCTTTT
*
36496027 AAATCAATTTGAATAAAATCAAATC
1 AAATCAATTAGAATAAAATCAAATC
** *
36496052 AAATTGATTAGAATCAAATCAAATC
1 AAATCAATTAGAATAAAATCAAATC
36496077 AA
1 AA
36496079 GATATTTGTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.56, C:0.12, G:0.06, T:0.27
Consensus pattern (25 bp):
AAATCAATTAGAATAAAATCAAATC
Found at i:36500814 original size:82 final size:82
Alignment explanation
Indices: 36500570--36500958 Score: 349
Period size: 82 Copynumber: 4.7 Consensus size: 82
36500560 AATTCTGATA
* * * * * *
36500570 CAAAATCAGAATCAATTCTGTTGACCGGC-AGGATCAAATCT-GAAATTAAAATTATTTAATTAA
1 CAAAAT-AGAATAAAATCTGTTGAACGGCGAGAAT-AAATCTAGAAA-TAGAATTATTCAATTAA
* * *
36500633 ATCTTGTTTGGAAAAAAAAT
63 TTATAGTTTGGAAAAAAAAT
* * * * * * * *
36500653 GAAAATCGAATAAAATTTGTTAAATGGCGGGAATAAATCCTA-AAA-AAAATTATTCATTTAATT
1 CAAAATAGAATAAAATCTGTTGAACGGCGAGAATAAAT-CTAGAAATAGAATTATTCAATTAATT
* *
36500716 ATTGTTTGGAAACAAAAT
65 ATAGTTTGGAAAAAAAAT
* * * *
36500734 CAAAATAGAATAAAATATGTTGAGCGGCGAGAATAAATCTAGAAATAGAATTATACAATTAATTC
1 CAAAATAGAATAAAATCTGTTGAACGGCGAGAATAAATCTAGAAATAGAATTATTCAATTAATTA
*
36500799 TAGTTTGGAAACAAAAT
66 TAGTTTGGAAAAAAAAT
* * * ** *
36500816 CAAAATGGAATAAAATCTGTTGAACGGCGGGAATAAACCCCGAAATAGAATTATTCAATTAGTTA
1 CAAAATAGAATAAAATCTGTTGAACGGCGAGAATAAATCTAGAAATAGAATTATTCAATTAATTA
*
36500881 TCA-TTTTGAAAAAAAAT
66 T-AGTTTGGAAAAAAAAT
* * * * *
36500898 CAAAATGGAATAAAATCTGTTGAACGG-AAGGAATAAGTCTCGAAATAGATTTTATTCAATT
1 CAAAATAGAATAAAATCTGTTGAACGGCGA-GAATAAATCTAGAAATAGA-ATTATTCAATT
36500959 TTATTTTTTT
Statistics
Matches: 253, Mismatches: 45, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
80 3 0.01
81 65 0.26
82 161 0.64
83 24 0.09
ACGTcount: A:0.46, C:0.10, G:0.15, T:0.29
Consensus pattern (82 bp):
CAAAATAGAATAAAATCTGTTGAACGGCGAGAATAAATCTAGAAATAGAATTATTCAATTAATTA
TAGTTTGGAAAAAAAAT
Found at i:36500829 original size:163 final size:162
Alignment explanation
Indices: 36500570--36500946 Score: 414
Period size: 164 Copynumber: 2.3 Consensus size: 162
36500560 AATTCTGATA
* * * * * **
36500570 CAAAATCAGAATCAATTCTGTTGACCGGCAGGATCAAATCTGAAATTAAAATTATTTAATTAAAT
1 CAAAAT-AGAATAAAATCTGTTGAACGGCAGAAT-AAATCTGAAA-TAGAATTATACAATTAAAT
* * * * * *
36500635 CTTGTTTGGAAAAAAAATGAAAATCGAATAAAATTTGTTAAATGGCGGGAATAAA-TCCTAAAAA
63 CTAGTTTGGAAAAAAAATCAAAATCGAATAAAATCTGTTAAACGGCGGGAATAAACCCCGAAAAA
* ** *
36500699 AAATTATTCATTTAATTATTGTTTGGAAACAAAAT
128 AAATTATTCAATTAATTATCATTTGGAAAAAAAAT
* * *
36500734 CAAAATAGAATAAAATATGTTGAGCGGCGAGAATAAATCTAGAAATAGAATTATACAATTAATTC
1 CAAAATAGAATAAAATCTGTTGAACGGC-AGAATAAATCT-GAAATAGAATTATACAATTAAATC
* * * * *
36500799 TAGTTTGGAAACAAAATCAAAATGGAATAAAATCTGTTGAACGGCGGGAATAAACCCCGAAATAG
64 TAGTTTGGAAAAAAAATCAAAATCGAATAAAATCTGTTAAACGGCGGGAATAAACCCCGAAAAAA
* *
36500864 AATTATTCAATTAGTTATCATTTTGAAAAAAAAT
129 AATTATTCAATTAATTATCATTTGGAAAAAAAAT
* * *
36500898 CAAAATGGAATAAAATCTGTTGAACGGAAGGAATAAGTCTCGAAATAGA
1 CAAAATAGAATAAAATCTGTTGAACGGCA-GAATAAATCT-GAAATAGA
36500947 TTTTATTCAA
Statistics
Matches: 177, Mismatches: 32, Indels: 8
0.82 0.15 0.04
Matches are distributed among these distances:
163 88 0.50
164 89 0.50
ACGTcount: A:0.46, C:0.10, G:0.16, T:0.28
Consensus pattern (162 bp):
CAAAATAGAATAAAATCTGTTGAACGGCAGAATAAATCTGAAATAGAATTATACAATTAAATCTA
GTTTGGAAAAAAAATCAAAATCGAATAAAATCTGTTAAACGGCGGGAATAAACCCCGAAAAAAAA
TTATTCAATTAATTATCATTTGGAAAAAAAAT
Found at i:36501143 original size:16 final size:13
Alignment explanation
Indices: 36501087--36501137 Score: 52
Period size: 13 Copynumber: 3.9 Consensus size: 13
36501077 GCGAACAAAT
36501087 ATAA-ATATAAATA
1 ATAATATATAAA-A
*
36501100 ATTATAT-TAAAA
1 ATAATATATAAAA
*
36501112 ATAATATCTAAAA
1 ATAATATATAAAA
36501125 ATAATAATATAAA
1 ATAAT-ATATAAA
36501138 CAAATATTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
12 7 0.22
13 17 0.53
14 8 0.25
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (13 bp):
ATAATATATAAAA
Found at i:36503275 original size:82 final size:82
Alignment explanation
Indices: 36503197--36503435 Score: 311
Period size: 82 Copynumber: 2.9 Consensus size: 82
36503187 ACAATTACTT
* * * *
36503197 AATTAAGTCTTGTTTGGAAACAAAATCAAAATCGAATAAAATATGTTAAACGGCGGGAATAAATC
1 AATTAATTCTTGTTTGGAAACAAAATCAAAATAGAATAAAATATGTTGAACGGCGAGAATAAATC
*
36503262 CTGAAACAGAATTATCC
66 CTGAAACAGAATTATAC
* * *
36503279 ATTTAATTATTGTTTAGAAACAAAATCAAAATAGAATAAAATATGTTGAACGGCGAGAATAAAT-
1 AATTAATTCTTGTTTGGAAACAAAATCAAAATAGAATAAAATATGTTGAACGGCGAGAATAAATC
*
36503343 CTCGAAATAGAATTATAC
66 CT-GAAACAGAATTATAC
* * * * *
36503361 AATTAATTCTCGTTTGGAAACAAAATCAAAATGGAATAAAATCTGTTGAATGG-AATGAATAAAT
1 AATTAATTCTTGTTTGGAAACAAAATCAAAATAGAATAAAATATGTTGAACGGCGA-GAATAAAT
*
36503425 CCCGAAACAGA
65 CCTGAAACAGA
36503436 TTTTATTCAA
Statistics
Matches: 135, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
81 3 0.02
82 131 0.97
83 1 0.01
ACGTcount: A:0.47, C:0.11, G:0.15, T:0.27
Consensus pattern (82 bp):
AATTAATTCTTGTTTGGAAACAAAATCAAAATAGAATAAAATATGTTGAACGGCGAGAATAAATC
CTGAAACAGAATTATAC
Found at i:36503625 original size:25 final size:25
Alignment explanation
Indices: 36503573--36503622 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
36503563 GTTAGCGAAC
* *
36503573 AAATATAAATATAAATAATTATATT
1 AAATATAAATATAAAAAATAATATT
*
36503598 AAATATAATATCTAAAAAATAATAT
1 AAATATAA-ATATAAAAAATAATAT
36503623 AAACAAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 8 0.38
26 13 0.62
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (25 bp):
AAATATAAATATAAAAAATAATATT
Found at i:36504139 original size:20 final size:20
Alignment explanation
Indices: 36504116--36504156 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
36504106 TTAAATAAAT
*
36504116 TTGATTAAAATCAAATCAAA
1 TTGATTAAAATCAAACCAAA
*
36504136 TTGATTGAAATCAAACCAAA
1 TTGATTAAAATCAAACCAAA
36504156 T
1 T
36504157 CAAGATATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.51, C:0.12, G:0.07, T:0.29
Consensus pattern (20 bp):
TTGATTAAAATCAAACCAAA
Found at i:36508069 original size:18 final size:17
Alignment explanation
Indices: 36508042--36508077 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 17
36508032 ATAACTAGTC
36508042 AAAGGAGAGGACAAAGG
1 AAAGGAGAGGACAAAGG
36508059 AAAGTGAGAGGACAAAGG
1 AAAG-GAGAGGACAAAGG
36508077 A
1 A
36508078 TTAGAAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.53, C:0.06, G:0.39, T:0.03
Consensus pattern (17 bp):
AAAGGAGAGGACAAAGG
Found at i:36508947 original size:554 final size:553
Alignment explanation
Indices: 36507898--36508953 Score: 1388
Period size: 554 Copynumber: 1.9 Consensus size: 553
36507888 AAAAAGGAGT
* * * *
36507898 AGGTGTGGCGGTAAACAGAAGAAAAAAGAGAAGAGAAAAGAGTACTTTGTAGGAAAGGGGCGGCA
1 AGGTGTGGCGGTAAAAAGAAGAAAAAAGAGAAGAGAAAAGAGGACTTTGGAGGAAAGGGGCAGCA
* * * * *
36507963 CAAGGTGATGGTTTGGAGAAAAATGACAAAAGAAAAAACTGGATGTGTTTCTTTAGTAATAGGGT
66 CAAGGTGATGGTTTAGAGAAAAATGACAAAAGAAAAAAATAGATGTGTTTCTTTAGAAATAGGGG
* * *
36508028 TGGCATAACTAGTCAAAGGAGAGGACAAAGGAAAGTGAGAGGACAAAGGATTAGAAAGAGGGGAA
131 TGGCACAACTAGTCAAAGGAGAGGACAAAGGAAAGTGAGAGGACAAAGGAGTAGAAAGAGGAGAA
* * **
36508093 AATAAGGAAAGAAGGGAGGAAAGAATCTTGAGTTTGATAACTCATTTGGGCGTCAAAGGTTTTTA
196 AATAAGGAAAGAAGGGAGGAAAGAATCTTGAGTTTGACAACTCATTTGGGCATCAAAGGTGATTA
* ** *
36508158 ACCTGGGGCGTGTGCTGAAATTTTAACAAAAATTGCAAGAGAGGGGACTCAAACTCGAGTCTCAA
261 ACCTGAGGCGTGTGCCAAAATTTT-ACAAAAAATGCAAGAGAGGGGACTCAAACTCGAGTCTCAA
* * ***
36508223 GGATAGCTGCACTACTTAAGCACTAGGGAAAATACTCATTCTTGTTCAAAAGCTAGTGATAATAA
325 GGATAGCTGCACTACTTAAGAACTAGGCAAAATACTCATTCTTGTTCAAAAGCTAACAATAATAA
* * * * * *
36508288 AACATAAATTGAGGCGTGACAAGTCTCCGTCACTTAAAAAATATTTTATCCCCGAAATTTACTTG
390 AACATAAATCGAGGCGTGACAAGTCTCCCTCACTTAAAAAATATTTCATCCCCAAAATTTACCTA
* * * **
36508353 GTCTAAACAGATGAGGATACTATTGATGAATTGAGTCTTTCGACTCCCATATAACCTTTTCAGTG
455 GTCCAAACAGATGAGGATACTATTAACGAATCAAGTCTTTCGACTCCCATATAACCTTTTCAGTG
36508418 CCATGAATTCGCCAAAAAAGGTAGTGAAAGGAAA
520 CCATGAATTCGCCAAAAAAGGTAGTGAAAGGAAA
* ** * *
36508452 AGGTGTGGTGGTAAAAAGAAGAAAAGGGAGAAGAGAAAGGAGGAGTTTGGAGGAAAGGGGCAGCA
1 AGGTGTGGCGGTAAAAAGAAGAAAAAAGAGAAGAGAAAAGAGGACTTTGGAGGAAAGGGGCAGCA
* * * *
36508517 TAAGGTGGTGGTTTAGAGAAAAATGACAAAGGAAAAAAAATAGATGTGTTTCTTTGGAAATAGGG
66 CAAGGTGATGGTTTAGAGAAAAATGACAAAAG-AAAAAAATAGATGTGTTTCTTTAGAAATAGGG
* * * *
36508582 GTGGCACAACTAGTCAAAGGAGTGTGA-AAAGGCAAGTGA-AGGGATAAGGGAGTAGAAAGAGGA
130 GTGGCACAACTAGTCAAAGGAGAG-GACAAAGGAAAGTGAGA-GGACAAAGGAGTAGAAAGAGGA
36508645 GAAAATAAGGAAAGAAGGGAGGAAAGAATCTTGAGTTTGACAACTCATTTGGGCATCAAAGGTGA
193 GAAAATAAGGAAAGAAGGGAGGAAAGAATCTTGAGTTTGACAACTCATTTGGGCATCAAAGGTGA
* * * * * *
36508710 TTGACCTAGATGC-TTTGCCAAAATTTT-CAAAAAGATGCTAGAG-GAGGGACTCGAACTTGAGT
258 TTAACCT-GAGGCGTGTGCCAAAATTTTACAAAAA-ATGCAAGAGAG-GGGACTCAAACTCGAGT
* * *
36508772 CTCAAGGATAGCTAG-ACTACTTAAGAACTAGGCCAACTACTCATTCTTGTTCAAAAGTTAACAA
320 CTCAAGGATAGCT-GCACTACTTAAGAACTAGGCAAAATACTCATTCTTGTTCAAAAGCTAACAA
* * * * *
36508836 TAATAAAACATAAATCGGGGGGTGACAAGTCTCCC-CTACTTCAAAAATATTTCGTCCTCAAAAT
384 TAATAAAACATAAATCGAGGCGTGACAAGTCTCCCTC-ACTTAAAAAATATTTCATCCCCAAAAT
* * *
36508900 TTACCTAGTCCAAACAGATGAGGATATTGTTAACGAATCAAGTCTTTCGGCTCC
448 TTACCTAGTCCAAACAGATGAGGATACTATTAACGAATCAAGTCTTTCGACTCC
36508954 TACTTAGCCT
Statistics
Matches: 428, Mismatches: 66, Indels: 16
0.84 0.13 0.03
Matches are distributed among these distances:
553 8 0.02
554 258 0.60
555 157 0.37
556 5 0.01
ACGTcount: A:0.38, C:0.13, G:0.26, T:0.23
Consensus pattern (553 bp):
AGGTGTGGCGGTAAAAAGAAGAAAAAAGAGAAGAGAAAAGAGGACTTTGGAGGAAAGGGGCAGCA
CAAGGTGATGGTTTAGAGAAAAATGACAAAAGAAAAAAATAGATGTGTTTCTTTAGAAATAGGGG
TGGCACAACTAGTCAAAGGAGAGGACAAAGGAAAGTGAGAGGACAAAGGAGTAGAAAGAGGAGAA
AATAAGGAAAGAAGGGAGGAAAGAATCTTGAGTTTGACAACTCATTTGGGCATCAAAGGTGATTA
ACCTGAGGCGTGTGCCAAAATTTTACAAAAAATGCAAGAGAGGGGACTCAAACTCGAGTCTCAAG
GATAGCTGCACTACTTAAGAACTAGGCAAAATACTCATTCTTGTTCAAAAGCTAACAATAATAAA
ACATAAATCGAGGCGTGACAAGTCTCCCTCACTTAAAAAATATTTCATCCCCAAAATTTACCTAG
TCCAAACAGATGAGGATACTATTAACGAATCAAGTCTTTCGACTCCCATATAACCTTTTCAGTGC
CATGAATTCGCCAAAAAAGGTAGTGAAAGGAAA
Found at i:36521621 original size:25 final size:25
Alignment explanation
Indices: 36521593--36521665 Score: 119
Period size: 25 Copynumber: 2.9 Consensus size: 25
36521583 CTGAAGATCC
* *
36521593 GTATGCTCTCACGAGCTATAAATTT
1 GTATGCTCTCTCGAGCTATAAATTA
*
36521618 GTATGCTTTCTCGAGCTATAAATTA
1 GTATGCTCTCTCGAGCTATAAATTA
36521643 GTATGCTCTCTCGAGCTATAAAT
1 GTATGCTCTCTCGAGCTATAAAT
36521666 CGATAACCCT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.37
Consensus pattern (25 bp):
GTATGCTCTCTCGAGCTATAAATTA
Found at i:36529508 original size:11 final size:11
Alignment explanation
Indices: 36529494--36529518 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
36529484 AATAAGCATG
36529494 TAATATGAAAT
1 TAATATGAAAT
36529505 TAATATGAAAT
1 TAATATGAAAT
36529516 TAA
1 TAA
36529519 AGCTTGTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (11 bp):
TAATATGAAAT
Found at i:36531969 original size:35 final size:35
Alignment explanation
Indices: 36531915--36531986 Score: 110
Period size: 35 Copynumber: 2.1 Consensus size: 35
36531905 CTTAACTCCA
*
36531915 CTTCAATGACTATTTGGGAACTTC-AATTGTCAAAG
1 CTTCAATGACTATTCGGGAAC-TCAAATTGTCAAAG
*
36531950 CTTCAATGACTGTTCGGGAACTCAAATTGTCAAAG
1 CTTCAATGACTATTCGGGAACTCAAATTGTCAAAG
36531985 CT
1 CT
36531987 AAATCAATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
34 2 0.06
35 32 0.94
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (35 bp):
CTTCAATGACTATTCGGGAACTCAAATTGTCAAAG
Found at i:36535900 original size:9 final size:9
Alignment explanation
Indices: 36535888--36535918 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
36535878 AAAATATTAA
36535888 AATTCAATT
1 AATTCAATT
36535897 AATTCAATT
1 AATTCAATT
36535906 AATTCAATT
1 AATTCAATT
36535915 AATT
1 AATT
36535919 AAAATTCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.45, C:0.10, G:0.00, T:0.45
Consensus pattern (9 bp):
AATTCAATT
Found at i:36535926 original size:15 final size:15
Alignment explanation
Indices: 36535883--36535943 Score: 70
Period size: 15 Copynumber: 3.9 Consensus size: 15
36535873 TATATAAAAT
36535883 ATTAAAATTCAATTA
1 ATTAAAATTCAATTA
36535898 ATTCAATTAATTCAATTA
1 ATT-AA--AATTCAATTA
36535916 ATTAAAATTC-ATTGA
1 ATTAAAATTCAATT-A
*
36535931 ATCAAAATTCAAT
1 ATTAAAATTCAAT
36535944 ATATATATAA
Statistics
Matches: 40, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
14 3 0.08
15 18 0.45
16 4 0.10
17 2 0.05
18 13 0.32
ACGTcount: A:0.49, C:0.10, G:0.02, T:0.39
Consensus pattern (15 bp):
ATTAAAATTCAATTA
Found at i:36535955 original size:33 final size:33
Alignment explanation
Indices: 36535881--36535956 Score: 88
Period size: 33 Copynumber: 2.3 Consensus size: 33
36535871 TATATATAAA
36535881 ATATTAAAATTCAATTAATTCAATTAATTCAATT
1 ATATTAAAATTCAATTAATTCAA-TAATTCAATT
36535915 A-ATTAAAATTC-ATTGAA-TCAA-AATTCAATAT
1 ATATTAAAATTCAATT-AATTCAATAATTCAAT-T
36535946 ATATATAAAAT
1 ATAT-TAAAAT
36535957 ATTATTTACT
Statistics
Matches: 38, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
30 8 0.21
31 2 0.05
32 9 0.24
33 18 0.47
34 1 0.03
ACGTcount: A:0.51, C:0.08, G:0.01, T:0.39
Consensus pattern (33 bp):
ATATTAAAATTCAATTAATTCAATAATTCAATT
Found at i:36540402 original size:115 final size:115
Alignment explanation
Indices: 36540200--36540429 Score: 406
Period size: 115 Copynumber: 2.0 Consensus size: 115
36540190 CCCAAAATAA
* *
36540200 ACTTTAATGTTTATATTAAATACTTTTCTCATCCCAATTTTACCTTTATTTACTTTTCATCAACC
1 ACTTTAATGTTTATATTAAATAATTTTCTCATCCCAATTTTACCTCTATTTACTTTTCATCAACC
*
36540265 ATGTAATACCAATGAAAGGATATCATTTACCCATGACTCGGGCTATGAAT
66 ATGTAATACCAATGAAAGGATATCATTTACCCATGACTCGGACTATGAAT
*
36540315 ACTTTAATGTTTATATTAAATAATTTTCTCATCCCAATTTTACCTCTGTTTACTTTTCATCAACC
1 ACTTTAATGTTTATATTAAATAATTTTCTCATCCCAATTTTACCTCTATTTACTTTTCATCAACC
* *
36540380 ATGTAATACCAATGAGAGGATATCATTTACCCATGACTTGGACTATGAAT
66 ATGTAATACCAATGAAAGGATATCATTTACCCATGACTCGGACTATGAAT
36540430 TCCACTATTG
Statistics
Matches: 109, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
115 109 1.00
ACGTcount: A:0.31, C:0.20, G:0.09, T:0.40
Consensus pattern (115 bp):
ACTTTAATGTTTATATTAAATAATTTTCTCATCCCAATTTTACCTCTATTTACTTTTCATCAACC
ATGTAATACCAATGAAAGGATATCATTTACCCATGACTCGGACTATGAAT
Found at i:36543669 original size:25 final size:26
Alignment explanation
Indices: 36543601--36543680 Score: 76
Period size: 25 Copynumber: 3.2 Consensus size: 26
36543591 GTACATGTAT
* *
36543601 GCTC-ATACAAGCTGTGAATCGGTAT
1 GCTCTATACGAGCTGTGAATCGGTAA
* *
36543626 GCTCT-CACGAGTTGTGAATCGGTAA
1 GCTCTATACGAGCTGTGAATCGGTAA
* **
36543651 GCT-TATACGAGCTGAGAATTAGTAA
1 GCTCTATACGAGCTGTGAATCGGTAA
36543676 GCTCT
1 GCTCT
36543681 CATGACCTAC
Statistics
Matches: 43, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
24 1 0.02
25 41 0.95
26 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
GCTCTATACGAGCTGTGAATCGGTAA
Found at i:36549335 original size:22 final size:22
Alignment explanation
Indices: 36549309--36549359 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
36549299 TTGTACTATA
36549309 ATTTAATTAATGTATT-AATTAG
1 ATTTAATTAATGT-TTAAATTAG
*
36549331 ATTT-ATTTATGTTTAAATTAG
1 ATTTAATTAATGTTTAAATTAG
*
36549352 AATTAATT
1 ATTTAATT
36549360 TAGTGCTCTC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 2 0.08
21 16 0.64
22 7 0.28
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (22 bp):
ATTTAATTAATGTTTAAATTAG
Found at i:36551819 original size:14 final size:15
Alignment explanation
Indices: 36551795--36551823 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
36551785 AGCGGGTGTA
36551795 TGTGTGTTAGAAGAT
1 TGTGTGTTAGAAGAT
36551810 TGTG-GTTAGAAGAT
1 TGTGTGTTAGAAGAT
36551824 GTCTTTTGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.34, T:0.38
Consensus pattern (15 bp):
TGTGTGTTAGAAGAT
Found at i:36552549 original size:14 final size:14
Alignment explanation
Indices: 36552530--36552556 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
36552520 TCTTCCCTTC
36552530 CTCATTTCACACAA
1 CTCATTTCACACAA
36552544 CTCATTTCACACA
1 CTCATTTCACACA
36552557 CATCTCTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.37, G:0.00, T:0.30
Consensus pattern (14 bp):
CTCATTTCACACAA
Found at i:36554458 original size:9 final size:9
Alignment explanation
Indices: 36554444--36554495 Score: 50
Period size: 9 Copynumber: 5.7 Consensus size: 9
36554434 TTCATATCCT
36554444 TCTCTCAAC
1 TCTCTCAAC
**
36554453 TCTCTCAGT
1 TCTCTCAAC
36554462 TCTCTCAAAC
1 TCTCTC-AAC
* *
36554472 CCTCTCAAG
1 TCTCTCAAC
*
36554481 TCTCTCAAG
1 TCTCTCAAC
36554490 TCTCTC
1 TCTCTC
36554496 GTTTTTAATA
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
9 29 0.83
10 6 0.17
ACGTcount: A:0.19, C:0.40, G:0.06, T:0.35
Consensus pattern (9 bp):
TCTCTCAAC
Found at i:36554478 original size:19 final size:20
Alignment explanation
Indices: 36554443--36554488 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
36554433 ATTCATATCC
*
36554443 TTCTCTC-AACTCTCTC-AG
1 TTCTCTCAAACCCTCTCAAG
36554461 TTCTCTCAAACCCTCTCAAG
1 TTCTCTCAAACCCTCTCAAG
36554481 -TCTCTCAA
1 TTCTCTCAA
36554489 GTCTCTCGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 7 0.28
19 16 0.64
20 2 0.08
ACGTcount: A:0.22, C:0.39, G:0.04, T:0.35
Consensus pattern (20 bp):
TTCTCTCAAACCCTCTCAAG
Found at i:36565489 original size:101 final size:102
Alignment explanation
Indices: 36565361--36565545 Score: 275
Period size: 101 Copynumber: 1.8 Consensus size: 102
36565351 AAAGTGATGG
* * *
36565361 TCACATGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGA-A-TGATAGGTCGCATGTGTAGT
1 TCACATGTGTAGTACTATGTGCAGGCTACTACATGTACCAGACAGTGAT-GGTCACATGTGTAGT
36565424 ACAATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
65 ACAATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
* * *
36565462 TCACGTGTGTAGTACTATGTGCAGGCTACTACATGTATCGGACAGTGATGGTCACATGTGTAGTA
1 TCACATGTGTAGTACTATGTGCAGGCTACTACATGTACCAGACAGTGATGGTCACATGTGTAGTA
* *
36565527 CTATGTGCAGGCTATTATG
66 CAATGTGCAGGCTACTATG
36565546 TGAATCGGTA
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
101 37 0.50
102 33 0.45
103 4 0.05
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (102 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTACATGTACCAGACAGTGATGGTCACATGTGTAGTA
CAATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
Found at i:36565553 original size:51 final size:51
Alignment explanation
Indices: 36565352--36565540 Score: 217
Period size: 51 Copynumber: 3.7 Consensus size: 51
36565342 GATAAACTGA
* *
36565352 AAGTGAT-GGTCACATGTGTAGTACTATGTGTAGGCTACTACGTGTACCAG
1 AAGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG
* * * *
36565402 AA-TGATAGGTCGCATGTGTAGTACAATGTGCAGGCTACTATGCGTACCGG
1 AAGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG
* * * * *
36565452 ATAGCT--TCGATCACGTGTGTAGTACTATGTGCAGGCTACTACATGTATCGG
1 A-AG-TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG
36565503 ACAGTGAT-GGTCACATGTGTAGTACTATGTGCAGGCTA
1 A-AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTA
36565541 TTATGTGAAT
Statistics
Matches: 115, Mismatches: 18, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
49 4 0.03
50 41 0.36
51 68 0.59
52 1 0.01
53 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.29
Consensus pattern (51 bp):
AAGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG
Found at i:36565792 original size:16 final size:16
Alignment explanation
Indices: 36565771--36565802 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
36565761 TGATTGAAAG
*
36565771 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
36565787 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
36565803 GCAACAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:36571246 original size:31 final size:30
Alignment explanation
Indices: 36571184--36571243 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
36571174 GCCTTTTGAA
* * *
36571184 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAAGCACCAAATTTTT
36571214 AATATTTACAAAAA-AAGCAACCAAATTTTT
1 AATATTTACAAAAAGAAGC-ACCAAATTTTT
36571244 TAAAACTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 3 0.12
30 23 0.88
ACGTcount: A:0.48, C:0.12, G:0.07, T:0.33
Consensus pattern (30 bp):
AATATTTACAAAAAGAAGCACCAAATTTTT
Found at i:36579079 original size:45 final size:46
Alignment explanation
Indices: 36579028--36579121 Score: 181
Period size: 46 Copynumber: 2.1 Consensus size: 46
36579018 ACAAAGAAAA
36579028 AACCTCGACCCACTATCAA-GATGATAGGAACCTTGGTATATGATG
1 AACCTCGACCCACTATCAAGGATGATAGGAACCTTGGTATATGATG
36579073 AACCTCGACCCACTATCAAGGATGATAGGAACCTTGGTATATGATG
1 AACCTCGACCCACTATCAAGGATGATAGGAACCTTGGTATATGATG
36579119 AAC
1 AAC
36579122 GCCACAATAT
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
45 19 0.40
46 29 0.60
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.23
Consensus pattern (46 bp):
AACCTCGACCCACTATCAAGGATGATAGGAACCTTGGTATATGATG
Found at i:36580920 original size:27 final size:27
Alignment explanation
Indices: 36580882--36580961 Score: 142
Period size: 27 Copynumber: 3.0 Consensus size: 27
36580872 ATAAATAGAG
36580882 TAGTTTGATACTAACTTGATGTGTGTC
1 TAGTTTGATACTAACTTGATGTGTGTC
36580909 TAGTTTGATACTAACTTGATGTGTGTC
1 TAGTTTGATACTAACTTGATGTGTGTC
* *
36580936 TAGTTTGATACTAACTTAATATGTGT
1 TAGTTTGATACTAACTTGATGTGTGT
36580962 TTATGTTATG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.25, C:0.10, G:0.20, T:0.45
Consensus pattern (27 bp):
TAGTTTGATACTAACTTGATGTGTGTC
Found at i:36592305 original size:29 final size:29
Alignment explanation
Indices: 36592233--36592325 Score: 93
Period size: 29 Copynumber: 3.2 Consensus size: 29
36592223 CACTCTCTCA
* *
36592233 GTTCTGACATGGCACTTCAGTG-TCGCTCT
1 GTTCTGACATGGCACTTGAGTGCT-ACTCT
* * *
36592262 GTTCTGA-TTAAGCACTTGAGTGCTATTCT
1 GTTCTGACAT-GGCACTTGAGTGCTACTCT
36592291 GTTCTGACATGGCACTCTG-GTGCTACTCT
1 GTTCTGACATGGCACT-TGAGTGCTACTCT
36592320 GTTCTG
1 GTTCTG
36592326 TTATTGCACT
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
28 1 0.02
29 47 0.90
30 4 0.08
ACGTcount: A:0.15, C:0.24, G:0.24, T:0.38
Consensus pattern (29 bp):
GTTCTGACATGGCACTTGAGTGCTACTCT
Found at i:36592334 original size:29 final size:29
Alignment explanation
Indices: 36592258--36592336 Score: 81
Period size: 29 Copynumber: 2.7 Consensus size: 29
36592248 TTCAGTGTCG
36592258 CTCTGTTCTGATTA-AGCACTTGAGTGCTA
1 CTCTGTTCTG-TTATAGCACTTGAGTGCTA
* ** *
36592287 TTCTGTTCTGACATGGCACTCTG-GTGCTA
1 CTCTGTTCTGTTATAGCACT-TGAGTGCTA
*
36592316 CTCTGTTCTGTTATTGCACTT
1 CTCTGTTCTGTTATAGCACTT
36592337 CGGTGCATCC
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
28 2 0.05
29 36 0.90
30 2 0.05
ACGTcount: A:0.15, C:0.23, G:0.20, T:0.42
Consensus pattern (29 bp):
CTCTGTTCTGTTATAGCACTTGAGTGCTA
Found at i:36597604 original size:43 final size:43
Alignment explanation
Indices: 36597544--36597712 Score: 140
Period size: 43 Copynumber: 3.7 Consensus size: 43
36597534 AAAAAATTTA
* *
36597544 AAAATCAAATTAAGGTTTAGTGTTAAGGGTTTTTAAGGAAAAAT
1 AAAAT-AAATTAGGGTTTAGGGTTAAGGGTTTTTAAGGAAAAAT
* * * * **
36597588 CAAATAAATTAGGGTTTAGGGTTACTTGAGTAATTTAATTATAAATTTAAT
1 AAAATAAATTAGGGTTTAGGGTTA--AGGGT-TTTTAA--GGAAA---AAT
* *
36597639 AAAATTAGATTAGGGTTTAGTGTTAAGGGTTTTTAAGGAAAAAT
1 AAAA-TAAATTAGGGTTTAGGGTTAAGGGTTTTTAAGGAAAAAT
* *
36597683 TAAATAAATTAGGGTTTAGGGTTTAGGGTT
1 AAAATAAATTAGGGTTTAGGGTTAAGGGTT
36597713 ACTTGAGTAA
Statistics
Matches: 96, Mismatches: 20, Indels: 19
0.71 0.15 0.14
Matches are distributed among these distances:
43 40 0.42
44 10 0.10
45 3 0.03
46 5 0.05
47 3 0.03
48 3 0.03
49 5 0.05
50 3 0.03
51 6 0.06
52 18 0.19
ACGTcount: A:0.38, C:0.02, G:0.22, T:0.38
Consensus pattern (43 bp):
AAAATAAATTAGGGTTTAGGGTTAAGGGTTTTTAAGGAAAAAT
Found at i:36597604 original size:95 final size:95
Alignment explanation
Indices: 36597405--36597802 Score: 412
Period size: 95 Copynumber: 4.1 Consensus size: 95
36597395 ATAAATAAGG
* * * * ** *
36597405 AATTAGGGTTT-AGAGTTTCTTAATTAAATTAATT-AAAATTTTTTAAAATTAGA-TAGGGTTTC
1 AATTAGGGTTTAAG-GTTACTTGAGTAAATTAATTAAAAAATTTAAAAAATTAGATTAGGGTTTA
* *** * *
36597467 GTGTTTATAATTTTTAAAGAAAAAATCAATTA
65 GTGTTAAGGGTTTTT-AAGGAAAAATCAAATA
* * *
36597499 AATTAGGGTTTAAGGTTACTTGAGTAAATTAATTAAAAAAATTT-AAAAATCAAATTAAGGTTTA
1 AATTAGGGTTTAAGGTTACTTGAGTAAATTAATT-AAAAAATTTAAAAAATTAGATTAGGGTTTA
36597563 GTGTTAAGGGTTTTTAAGGAAAAATCAAATA
65 GTGTTAAGGGTTTTTAAGGAAAAATCAAATA
* * *
36597594 AATTAGGGTTTAGGGTTACTTGAGTAATTTAATT-ATAAATTTAATAAAATTAGATTAGGGTTTA
1 AATTAGGGTTTAAGGTTACTTGAGTAAATTAATTAAAAAATTTAA-AAAATTAGATTAGGGTTTA
*
36597658 GTGTTAAGGGTTTTTAAGGAAAAATTAAATA
65 GTGTTAAGGGTTTTTAAGGAAAAATCAAATA
* *
36597689 AATTAGGGTTTAGGGTTTAGGGTTACTTGAGTAAATTAATTATAAATTTTAAAAAAATTAGATTA
1 AATTAGGGTTTA------A-GGTTACTTGAGTAAATTAATTAAAAAATTT-AAAAAATTAGATTA
* * *
36597754 GGGTTTAGTGTTTAA-CGTTTTTAAAGAAAACTCAAATA
58 GGGTTTAGTG-TTAAGGGTTTTTAAGGAAAAATCAAATA
36597792 AATTAGGGTTT
1 AATTAGGGTTT
36597803 GGGGTTTAGG
Statistics
Matches: 257, Mismatches: 31, Indels: 23
0.83 0.10 0.07
Matches are distributed among these distances:
93 7 0.03
94 29 0.11
95 113 0.44
96 25 0.10
102 20 0.08
103 57 0.22
104 6 0.02
ACGTcount: A:0.40, C:0.03, G:0.17, T:0.39
Consensus pattern (95 bp):
AATTAGGGTTTAAGGTTACTTGAGTAAATTAATTAAAAAATTTAAAAAATTAGATTAGGGTTTAG
TGTTAAGGGTTTTTAAGGAAAAATCAAATA
Found at i:36597783 original size:103 final size:102
Alignment explanation
Indices: 36597377--36597847 Score: 449
Period size: 103 Copynumber: 4.7 Consensus size: 102
36597367 AGGTTTATGG
* * ** * * * *
36597377 TTTTAAAGAAAAAATTAAATAAATAAGGAATTAGGGTTTAGAGTTTCTTAATTAAATTAATTA-A
1 TTTTAAAG-AAAAATCAAATAAATTAGGGTTTAGGGTTTAGGGTTACTTGAGTAAATTAATTATA
*** * * ***
36597441 AATTTTTTAAAATTAGA-TAGGGTTTCGTGTTTATAAT
65 AATTTAAAAAAATTAGATTAGGGTTTAGTGTTAAGGGT
*
36597478 TTTTAAAGAAAAAATCAATTAAATTAGGGTTTA------A-GGTTACTTGAGTAAATTAATTAAA
1 TTTTAAAG-AAAAATCAAATAAATTAGGGTTTAGGGTTTAGGGTTACTTGAGTAAATTAATT--A
* * * *
36597536 AAAATTT--AAAAATCAAATTAAGGTTTAGTGTTAAGGGT
63 TAAATTTAAAAAAATTAGATTAGGGTTTAGTGTTAAGGGT
* *
36597574 TTTTAAGGAAAAATCAAAT-AA--A----TTAGGGTTTAGGGTTACTTGAGTAATTTAATTATAA
1 TTTTAAAGAAAAATCAAATAAATTAGGGTTTAGGGTTTAGGGTTACTTGAGTAAATTAATTATAA
*
36597632 ATTTAATAAAATTAGATTAGGGTTTAGTGTTAAGGGT
66 ATTTAAAAAAATTAGATTAGGGTTTAGTGTTAAGGGT
* *
36597669 TTTTAAGGAAAAATTAAATAAATTAGGGTTTAGGGTTTAGGGTTACTTGAGTAAATTAATTATAA
1 TTTTAAAGAAAAATCAAATAAATTAGGGTTTAGGGTTTAGGGTTACTTGAGTAAATTAATTATAA
*
36597734 ATTTTAAAAAAATTAGATTAGGGTTTAGTGTTTAA-CGT
66 A-TTTAAAAAAATTAGATTAGGGTTTAGTG-TTAAGGGT
* * * * * * *
36597772 TTTTAAAGAAAACTCAAATAAATTAGGGTTTGGGGTTTAGGGTTACTTAATTAAATTATTTGTTA
1 TTTTAAAGAAAAATCAAATAAATTAGGGTTTAGGGTTTAGGGTTACTTGAGTAAATTAATTATAA
36597837 ATTTAAAAAAA
66 ATTTAAAAAAA
36597848 GCTCCCACGT
Statistics
Matches: 309, Mismatches: 39, Indels: 43
0.79 0.10 0.11
Matches are distributed among these distances:
88 3 0.01
92 1 0.00
93 7 0.02
94 20 0.06
95 83 0.27
96 24 0.08
97 6 0.02
98 1 0.00
101 28 0.09
102 46 0.15
103 86 0.28
104 4 0.01
ACGTcount: A:0.41, C:0.03, G:0.17, T:0.39
Consensus pattern (102 bp):
TTTTAAAGAAAAATCAAATAAATTAGGGTTTAGGGTTTAGGGTTACTTGAGTAAATTAATTATAA
ATTTAAAAAAATTAGATTAGGGTTTAGTGTTAAGGGT
Found at i:36601185 original size:34 final size:36
Alignment explanation
Indices: 36601111--36601207 Score: 128
Period size: 34 Copynumber: 2.7 Consensus size: 36
36601101 ATTTAAAAGA
*
36601111 ATTTCTATTATATTAAA-AATATAAAAGTAATTTTCT
1 ATTT-TATTACATTAAATAATATAAAAGTAATTTTCT
*
36601147 ATTTTATTACATTAAATAATATATAAG-AA-TTTCT
1 ATTTTATTACATTAAATAATATAAAAGTAATTTTCT
*
36601181 ATTTTATTACATCAAATAATATCAAAA
1 ATTTTATTACATTAAATAATAT-AAAA
36601208 TATTCAAAAT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
34 26 0.47
35 16 0.29
36 13 0.24
ACGTcount: A:0.46, C:0.07, G:0.02, T:0.44
Consensus pattern (36 bp):
ATTTTATTACATTAAATAATATAAAAGTAATTTTCT
Found at i:36601741 original size:30 final size:30
Alignment explanation
Indices: 36601707--36601768 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
36601697 CGTAGGTATC
36601707 GTCGGTTGAAG-TGTTGGGCCGGGTGACTGT
1 GTCGG-TGAAGTTGTTGGGCCGGGTGACTGT
** * *
36601737 GTCGGTGGTGTTGTTGGGCCTGGTGATTGT
1 GTCGGTGAAGTTGTTGGGCCGGGTGACTGT
36601767 GT
1 GT
36601769 GAGCGTTGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 3 0.11
30 24 0.89
ACGTcount: A:0.06, C:0.11, G:0.47, T:0.35
Consensus pattern (30 bp):
GTCGGTGAAGTTGTTGGGCCGGGTGACTGT
Found at i:36601779 original size:30 final size:30
Alignment explanation
Indices: 36601718--36601787 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
36601708 TCGGTTGAAG
* *
36601718 TGTTGGGCCGGGTGACTGTGTCGGTGGTGT
1 TGTTGGGCCTGGTGACTGTGTCGGCGGTGT
* *
36601748 TGTTGGGCCTGGTGATTGTGT-GAGCGTTGT
1 TGTTGGGCCTGGTGACTGTGTCG-GCGGTGT
*
36601778 TGATGGGCCT
1 TGTTGGGCCT
36601788 ACGTCGTTGT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 1 0.03
30 33 0.97
ACGTcount: A:0.06, C:0.13, G:0.46, T:0.36
Consensus pattern (30 bp):
TGTTGGGCCTGGTGACTGTGTCGGCGGTGT
Found at i:36603059 original size:41 final size:41
Alignment explanation
Indices: 36603002--36603083 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
36602992 TTCCAAAGTG
36603002 ATAGTACACTCTCCACATGGAAGATGGAATGTGTGCGTCTC
1 ATAGTACACTCTCCACATGGAAGATGGAATGTGTGCGTCTC
36603043 ATAGTACACTCTCCACATGGAAGATGGAATGTGTGCGTCTC
1 ATAGTACACTCTCCACATGGAAGATGGAATGTGTGCGTCTC
36603084 GAGTCTCCAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (41 bp):
ATAGTACACTCTCCACATGGAAGATGGAATGTGTGCGTCTC
Found at i:36603513 original size:11 final size:11
Alignment explanation
Indices: 36603499--36603546 Score: 55
Period size: 11 Copynumber: 4.4 Consensus size: 11
36603489 AGCTTTTTTA
36603499 AGAGGAATTTG
1 AGAGGAATTTG
36603510 AGAGGAATTTG
1 AGAGGAATTTG
36603521 AGA-GAATATTG
1 AGAGGAAT-TTG
*
36603532 -GAGAGAAATTG
1 AGAG-GAATTTG
36603543 AGAG
1 AGAG
36603547 AAAGGATTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
10 6 0.19
11 20 0.62
12 6 0.19
ACGTcount: A:0.42, C:0.00, G:0.35, T:0.23
Consensus pattern (11 bp):
AGAGGAATTTG
Found at i:36603545 original size:10 final size:10
Alignment explanation
Indices: 36603507--36603549 Score: 50
Period size: 10 Copynumber: 4.0 Consensus size: 10
36603497 TAAGAGGAAT
*
36603507 TTGAGAGGAAT
1 TTGAGA-GAAA
36603518 TTGAGAGAATA
1 TTGAGAGAA-A
36603529 TTGGAGAGAAA
1 TT-GAGAGAAA
36603540 TTGAGAGAAA
1 TTGAGAGAAA
36603550 GGATTTAAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
10 11 0.38
11 11 0.38
12 7 0.24
ACGTcount: A:0.44, C:0.00, G:0.33, T:0.23
Consensus pattern (10 bp):
TTGAGAGAAA
Found at i:36614345 original size:6 final size:6
Alignment explanation
Indices: 36614336--36614417 Score: 148
Period size: 6 Copynumber: 13.8 Consensus size: 6
36614326 TTTCATCCTT
*
36614336 ATTTTA ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
36614384 ATTTTG ATTTTG ATTTTG ATTTTG ATTTT- ATTTT
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTT
36614418 AATAGGTTGT
Statistics
Matches: 75, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
5 5 0.07
6 70 0.93
ACGTcount: A:0.18, C:0.00, G:0.13, T:0.68
Consensus pattern (6 bp):
ATTTTG
Found at i:36616108 original size:20 final size:20
Alignment explanation
Indices: 36616083--36616131 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
36616073 ATGAGGGTTT
36616083 TTTTTATTTAAATACCTTTC
1 TTTTTATTTAAATACCTTTC
* ** **
36616103 TTTTTAGTTAGTTTTCTTTC
1 TTTTTATTTAAATACCTTTC
36616123 TTTTTATTT
1 TTTTTATTT
36616132 TTAGAAAAAA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.16, C:0.10, G:0.04, T:0.69
Consensus pattern (20 bp):
TTTTTATTTAAATACCTTTC
Found at i:36623031 original size:27 final size:26
Alignment explanation
Indices: 36622963--36623032 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 26
36622953 AAAAATAAAA
36622963 ATTTACCAAAATATTATAACTTTTTTT
1 ATTTACCAAAATA-TATAACTTTTTTT
*
36622990 ATTTACCAAAATATATAATTTTTTTTT
1 ATTTACCAAAATATATAA-CTTTTTTT
36623017 ATTTACCAAAATATAT
1 ATTTACCAAAATATAT
36623033 CAAAAAAACA
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 5 0.12
27 36 0.88
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (26 bp):
ATTTACCAAAATATATAACTTTTTTT
Found at i:36623125 original size:27 final size:27
Alignment explanation
Indices: 36623095--36623161 Score: 98
Period size: 27 Copynumber: 2.5 Consensus size: 27
36623085 CGCCAATGAT
36623095 ATTGGCGGCACCAAAGGTGCCAAAACC
1 ATTGGCGGCACCAAAGGTGCCAAAACC
* * **
36623122 ATTGGCAGCACCAATGGTGCCAATGCC
1 ATTGGCGGCACCAAAGGTGCCAAAACC
36623149 ATTGGCGGCACCA
1 ATTGGCGGCACCA
36623162 CTCGTATTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.28, C:0.30, G:0.27, T:0.15
Consensus pattern (27 bp):
ATTGGCGGCACCAAAGGTGCCAAAACC
Found at i:36623334 original size:19 final size:21
Alignment explanation
Indices: 36623296--36623334 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
36623286 AATAATTGAT
*
36623296 TATATTGTTGTTATTATTTTG
1 TATATTGTTGTTAATATTTTG
36623317 TATATT-TTG-TAATATTTT
1 TATATTGTTGTTAATATTTT
36623335 TTGTTTTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 3 0.18
21 6 0.35
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.67
Consensus pattern (21 bp):
TATATTGTTGTTAATATTTTG
Found at i:36623630 original size:26 final size:26
Alignment explanation
Indices: 36623601--36623653 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36623591 TTTTAGTGTG
* *
36623601 TATTATTTTGAGTATAAAATTATTAA
1 TATTAATTTGAGTATAAAATTAATAA
36623627 TATTAATTTGAGTATAAAATTAATAA
1 TATTAATTTGAGTATAAAATTAATAA
36623653 T
1 T
36623654 TTTAGTGTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (26 bp):
TATTAATTTGAGTATAAAATTAATAA
Found at i:36623676 original size:12 final size:12
Alignment explanation
Indices: 36623659--36623689 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
36623649 ATAATTTTAG
36623659 TGTGTATTATTT
1 TGTGTATTATTT
36623671 TGTGTATTATTT
1 TGTGTATTATTT
*
36623683 TGAGTAT
1 TGTGTAT
36623690 AAATTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.19, C:0.00, G:0.19, T:0.61
Consensus pattern (12 bp):
TGTGTATTATTT
Found at i:36624289 original size:18 final size:18
Alignment explanation
Indices: 36624246--36624290 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
36624236 TTGACATGGT
*
36624246 TGGTGGTGAAGAAGAAGG
1 TGGTGGCGAAGAAGAAGG
**
36624264 TGCCGGCGAAGAAGAAGG
1 TGGTGGCGAAGAAGAAGG
36624282 TGGTGGCGA
1 TGGTGGCGA
36624291 TAATTGGGAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.29, C:0.09, G:0.49, T:0.13
Consensus pattern (18 bp):
TGGTGGCGAAGAAGAAGG
Found at i:36630122 original size:4 final size:4
Alignment explanation
Indices: 36630096--36630201 Score: 60
Period size: 4 Copynumber: 26.2 Consensus size: 4
36630086 TCTTCTTCTC
* * *
36630096 CTTT CCTT CTCTT C-TT C-TT CTTT CTTT CTTT TTTT CTCTT C-TC CTTT
1 CTTT CTTT CT-TT CTTT CTTT CTTT CTTT CTTT CTTT CT-TT CTTT CTTT
* * * *
36630143 CCCTTT CTTT CCTT C-TT -TTT CTTT CTTCC CTCTC CTTT CTTT CTCT
1 --CTTT CTTT CTTT CTTT CTTT CTTT CTT-T CT-TT CTTT CTTT CTTT
36630189 CTTT CTTT CTTT C
1 CTTT CTTT CTTT C
36630202 CCTCTCCTTC
Statistics
Matches: 81, Mismatches: 11, Indels: 20
0.72 0.10 0.18
Matches are distributed among these distances:
3 12 0.15
4 53 0.65
5 11 0.14
6 5 0.06
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (4 bp):
CTTT
Found at i:36630132 original size:19 final size:19
Alignment explanation
Indices: 36630085--36630124 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
36630075 CCTTCCTTCC
36630085 CTCTTCTTCTCCTTTCCTT
1 CTCTTCTTCTCCTTTCCTT
* *
36630104 CTCTTCTTCTTCTTTCTTT
1 CTCTTCTTCTCCTTTCCTT
36630123 CT
1 CT
36630125 TTTTTTCTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (19 bp):
CTCTTCTTCTCCTTTCCTT
Found at i:36630162 original size:32 final size:31
Alignment explanation
Indices: 36630115--36630210 Score: 101
Period size: 30 Copynumber: 3.1 Consensus size: 31
36630105 TCTTCTTCTT
*
36630115 CTTTCTTT-CTTTTTTTC--TCTTCTCCTTTCC
1 CTTTCTTTCCTTTTTTTCTTTCTTC-CCTCT-C
36630145 CTTTCTTTCCTTCTTTTTCTTTCTTCCCTCTC
1 CTTTCTTTCCTT-TTTTTCTTTCTTCCCTCTC
* *
36630177 CTTTCTTT-CTCTCTTTCTTTCTTTCCCTCTC
1 CTTTCTTTCCTTTTTTTCTTTC-TTCCCTCTC
36630208 CTT
1 CTT
36630211 CTGCCCCCCA
Statistics
Matches: 58, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
30 17 0.29
31 17 0.29
32 15 0.26
33 4 0.07
34 5 0.09
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (31 bp):
CTTTCTTTCCTTTTTTTCTTTCTTCCCTCTC
Found at i:36630166 original size:24 final size:24
Alignment explanation
Indices: 36630095--36630167 Score: 60
Period size: 26 Copynumber: 3.0 Consensus size: 24
36630085 CTCTTCTTCT
* *
36630095 CCTTTCCTTCTCTTCTTCTTCTTT-
1 CCTTTCTTTC-CTTCTTTTTCTTTC
** *
36630119 -CTTTCTTTTTTTCTCTTCTCCTTTC
1 CCTTTCTTTCCTTCT-TT-TTCTTTC
36630144 CCTTTCTTTCCTTCTTTTTCTTTC
1 CCTTTCTTTCCTTCTTTTTCTTTC
36630168 TTCCCTCTCC
Statistics
Matches: 37, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
22 4 0.11
23 8 0.22
24 11 0.30
25 2 0.05
26 12 0.32
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (24 bp):
CCTTTCTTTCCTTCTTTTTCTTTC
Found at i:36630199 original size:34 final size:35
Alignment explanation
Indices: 36630113--36630201 Score: 98
Period size: 34 Copynumber: 2.6 Consensus size: 35
36630103 TCTCTTCTTC
* * *
36630113 TTCTTTCTTTCTTTTTT-TCTCTTCTCCTTTCCCT
1 TTCTTTCTCTCTTTTTTCTTTCTTCTCCTCTCCCT
36630147 TTCTTTC-CT-TCTTTTTCTTTCTTC-CCTCT-CCT
1 TTCTTTCTCTCT-TTTTTCTTTCTTCTCCTCTCCCT
36630179 TTCTTTCTCTCTTTCTTTCTTTC
1 TTCTTTCTCTCTTT-TTTCTTTC
36630202 CCTCTCCTTC
Statistics
Matches: 47, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
32 11 0.23
33 14 0.30
34 22 0.47
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (35 bp):
TTCTTTCTCTCTTTTTTCTTTCTTCTCCTCTCCCT
Found at i:36630212 original size:18 final size:18
Alignment explanation
Indices: 36630145--36630212 Score: 58
Period size: 18 Copynumber: 4.1 Consensus size: 18
36630135 TCTCCTTTCC
* **
36630145 CTTTCTTTCCTTCTTTTT
1 CTTTCTTTCCCTCTCCTT
36630163 CTTTC-TTCCCTCT-C--
1 CTTTCTTTCCCTCTCCTT
*
36630177 CTTTCTTT--CTCTCTTT
1 CTTTCTTTCCCTCTCCTT
36630193 CTTTCTTTCCCTCTCCTT
1 CTTTCTTTCCCTCTCCTT
36630211 CT
1 CT
36630213 GCCCCCCACC
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
13 4 0.10
14 5 0.12
15 2 0.05
16 8 0.20
17 7 0.17
18 14 0.35
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (18 bp):
CTTTCTTTCCCTCTCCTT
Found at i:36630319 original size:27 final size:27
Alignment explanation
Indices: 36630244--36630310 Score: 116
Period size: 27 Copynumber: 2.5 Consensus size: 27
36630234 TATTATTAAC
36630244 TGGTGCCGCCAATGGTATTGGCACCAT
1 TGGTGCCGCCAATGGTATTGGCACCAT
* *
36630271 TGGTGCCGCCAATGGTTTTGGCACCTT
1 TGGTGCCGCCAATGGTATTGGCACCAT
36630298 TGGTGCCGCCAAT
1 TGGTGCCGCCAAT
36630311 CCCATTGGCG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.15, C:0.27, G:0.30, T:0.28
Consensus pattern (27 bp):
TGGTGCCGCCAATGGTATTGGCACCAT
Found at i:36630426 original size:27 final size:26
Alignment explanation
Indices: 36630368--36630436 Score: 102
Period size: 26 Copynumber: 2.6 Consensus size: 26
36630358 GATTTTTTTG
* *
36630368 ATATATTTTAGTAAATAAAAAAATTT
1 ATATATTTTAATAAATAAAAAAAATT
36630394 ATATATTTTAATAAATAAAAAAAATT
1 ATATATTTTAATAAATAAAAAAAATT
*
36630420 ATAATATTTTGATAAAT
1 AT-ATATTTTAATAAAT
36630437 TTTTATTTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
26 26 0.67
27 13 0.33
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (26 bp):
ATATATTTTAATAAATAAAAAAAATT
Found at i:36637056 original size:21 final size:21
Alignment explanation
Indices: 36637032--36637211 Score: 96
Period size: 21 Copynumber: 8.6 Consensus size: 21
36637022 GCTTGCTTTT
*
36637032 AGTTTAGCTCTTATGAGCTTC
1 AGTTTAACTCTTATGAGCTTC
* *
36637053 AG-TTAACTCATATGAGTTTC
1 AGTTTAACTCTTATGAGCTTC
* * * * *
36637073 AGTTTAACCCTTCTGGGTTTT
1 AGTTTAACTCTTATGAGCTTC
* * *
36637094 AGTTCAGCTCTTTTGAGCTTC
1 AGTTTAACTCTTATGAGCTTC
* * * *
36637115 AGTTTAACCCTAATGGGTTTC
1 AGTTTAACTCTTATGAGCTTC
* * *
36637136 AGTTTAGCTTTTCTGAGCTTC
1 AGTTTAACTCTTATGAGCTTC
* * * *
36637157 AGATTAACCCTTATGGGTTTTC
1 AGTTTAACTCTTATGAG-CTTC
* *
36637179 -GTTTAGCTCCTATGAGCTTCC
1 AGTTTAACTCTTATGAGCTT-C
*
36637200 A-TTTAACCCTTA
1 AGTTTAACTCTTA
36637212 CGGGTTTCTG
Statistics
Matches: 110, Mismatches: 45, Indels: 8
0.67 0.28 0.05
Matches are distributed among these distances:
20 19 0.17
21 88 0.80
22 3 0.03
ACGTcount: A:0.20, C:0.21, G:0.17, T:0.42
Consensus pattern (21 bp):
AGTTTAACTCTTATGAGCTTC
Found at i:36637117 original size:42 final size:42
Alignment explanation
Indices: 36637065--36637241 Score: 189
Period size: 42 Copynumber: 4.2 Consensus size: 42
36637055 TTAACTCATA
* * *
36637065 TGAGTTTCAGTTTAACCCTTCTGGGTTTTAGTTCAGCTCTTT
1 TGAGCTTCAGTTTAACCCTTATGGGTTTTAGTTTAGCTCTTT
* *
36637107 TGAGCTTCAGTTTAACCCTAATGGGTTTCAGTTTAGCT-TTT
1 TGAGCTTCAGTTTAACCCTTATGGGTTTTAGTTTAGCTCTTT
* * * *
36637148 CTGAGCTTCAGATTAACCCTTATGGGTTTTCGTTTAGCTCCTA
1 -TGAGCTTCAGTTTAACCCTTATGGGTTTTAGTTTAGCTCTTT
* * *
36637191 TGAGCTTCCA-TTTAACCCTTACGGGTTTCT-GTTTAGCACTTA
1 TGAGCTT-CAGTTTAACCCTTATGGGTTT-TAGTTTAGCTCTTT
*
36637233 TGTGCTTCA
1 TGAGCTTCA
36637242 TTGCAGCCTT
Statistics
Matches: 115, Mismatches: 16, Indels: 9
0.82 0.11 0.06
Matches are distributed among these distances:
41 5 0.04
42 106 0.92
43 4 0.03
ACGTcount: A:0.18, C:0.21, G:0.19, T:0.43
Consensus pattern (42 bp):
TGAGCTTCAGTTTAACCCTTATGGGTTTTAGTTTAGCTCTTT
Found at i:36637174 original size:84 final size:84
Alignment explanation
Indices: 36637065--36637227 Score: 220
Period size: 84 Copynumber: 1.9 Consensus size: 84
36637055 TTAACTCATA
* * * * * *
36637065 TGAGTTTCAGTTTAACCCTTCTGGGTTTTAGTTCAGCTCTTTTGAGCTT-CAGTTTAACCCTAAT
1 TGAGCTTCAGATTAACCCTTATGGGTTTTAGTTCAGCTCCTATGAGCTTCCA-TTTAACCCTAAC
36637129 GGGTTTCAGTTTAGCTTTTC
65 GGGTTTCAGTTTAGCTTTTC
* * *
36637149 TGAGCTTCAGATTAACCCTTATGGGTTTTCGTTTAGCTCCTATGAGCTTCCATTTAACCCTTACG
1 TGAGCTTCAGATTAACCCTTATGGGTTTTAGTTCAGCTCCTATGAGCTTCCATTTAACCCTAACG
*
36637214 GGTTTCTGTTTAGC
66 GGTTTCAGTTTAGC
36637228 ACTTATGTGC
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
84 66 0.97
85 2 0.03
ACGTcount: A:0.17, C:0.21, G:0.19, T:0.43
Consensus pattern (84 bp):
TGAGCTTCAGATTAACCCTTATGGGTTTTAGTTCAGCTCCTATGAGCTTCCATTTAACCCTAACG
GGTTTCAGTTTAGCTTTTC
Found at i:36646348 original size:19 final size:19
Alignment explanation
Indices: 36646324--36646396 Score: 128
Period size: 19 Copynumber: 3.8 Consensus size: 19
36646314 AATCTTCAAG
36646324 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
36646343 GATATGCAATTTTAGATAT
1 GATATGCAATCTTAGATAT
*
36646362 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
36646381 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
36646397 AGATATGATT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 50 1.00
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:36646647 original size:23 final size:23
Alignment explanation
Indices: 36646603--36646647 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
36646593 TCTTATTTTG
* *
36646603 TTGATTTGTGTATACTTTATTTA
1 TTGATTTGTATATACTTGATTTA
**
36646626 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATACTTGATTT
36646648 CAAATATCCT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.20, C:0.02, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATACTTGATTTA
Found at i:36651863 original size:7 final size:7
Alignment explanation
Indices: 36651851--36651883 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
36651841 TTTTAAACTT
36651851 ACATCAC
1 ACATCAC
36651858 ACATCAC
1 ACATCAC
36651865 ACATCAC
1 ACATCAC
36651872 ACATCAC
1 ACATCAC
36651879 ACATC
1 ACATC
36651884 TACCATTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.42, C:0.42, G:0.00, T:0.15
Consensus pattern (7 bp):
ACATCAC
Found at i:36661163 original size:21 final size:21
Alignment explanation
Indices: 36661138--36661201 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
36661128 ATGTTATGTC
36661138 AATGTATGAATTGTATGATTT
1 AATGTATGAATTGTATGATTT
* * *
36661159 AATGT-TCAAATTCTAT-A-GT
1 AATGTAT-GAATTGTATGATTT
36661178 AA--TATGAATTGTATGATTT
1 AATGTATGAATTGTATGATTT
36661197 AATGT
1 AATGT
36661202 TCAAATTGTA
Statistics
Matches: 31, Mismatches: 6, Indels: 12
0.63 0.12 0.24
Matches are distributed among these distances:
17 8 0.26
18 2 0.06
19 6 0.19
20 2 0.06
21 13 0.42
ACGTcount: A:0.36, C:0.03, G:0.16, T:0.45
Consensus pattern (21 bp):
AATGTATGAATTGTATGATTT
Found at i:36661193 original size:38 final size:38
Alignment explanation
Indices: 36661142--36661219 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
36661132 TATGTCAATG
36661142 TATGAATTGTATGATTTAATGTTCAAATTCTATAGTAA
1 TATGAATTGTATGATTTAATGTTCAAATTCTATAGTAA
*
36661180 TATGAATTGTATGATTTAATGTTCAAATTGTATAGTAA
1 TATGAATTGTATGATTTAATGTTCAAATTCTATAGTAA
36661218 TA
1 TA
36661220 CTCCGTAACC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.37, C:0.04, G:0.14, T:0.45
Consensus pattern (38 bp):
TATGAATTGTATGATTTAATGTTCAAATTCTATAGTAA
Found at i:36661208 original size:21 final size:21
Alignment explanation
Indices: 36661146--36661212 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 21
36661136 TCAATGTATG
36661146 AATTGTATGATTTAATGTTCA
1 AATTGTATGATTTAATGTTCA
* * * *
36661167 AATTCTAT-A-GTAAT-AT-G
1 AATTGTATGATTTAATGTTCA
36661184 AATTGTATGATTTAATGTTCA
1 AATTGTATGATTTAATGTTCA
36661205 AATTGTAT
1 AATTGTAT
36661213 AGTAATACTC
Statistics
Matches: 34, Mismatches: 8, Indels: 8
0.68 0.16 0.16
Matches are distributed among these distances:
17 7 0.21
18 2 0.06
19 8 0.24
20 2 0.06
21 15 0.44
ACGTcount: A:0.36, C:0.04, G:0.13, T:0.46
Consensus pattern (21 bp):
AATTGTATGATTTAATGTTCA
Found at i:36661218 original size:19 final size:19
Alignment explanation
Indices: 36661158--36661218 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
36661148 TTGTATGATT
*
36661158 TAATGTTCAAATTCTATAG
1 TAATGTTCAAATTGTATAG
* * *
36661177 TAAT-AT-GAATTGTATGATT
1 TAATGTTCAAATTGTAT-A-G
36661196 TAATGTTCAAATTGTATAG
1 TAATGTTCAAATTGTATAG
36661215 TAAT
1 TAAT
36661219 ACTCCGTAAC
Statistics
Matches: 31, Mismatches: 7, Indels: 8
0.67 0.15 0.17
Matches are distributed among these distances:
17 7 0.23
18 2 0.06
19 12 0.39
20 2 0.06
21 8 0.26
ACGTcount: A:0.38, C:0.05, G:0.13, T:0.44
Consensus pattern (19 bp):
TAATGTTCAAATTGTATAG
Found at i:36661293 original size:24 final size:24
Alignment explanation
Indices: 36661266--36661319 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
36661256 GGGTGTTATA
36661266 TTTTTGACATTTTCATTGATATCC
1 TTTTTGACATTTTCATTGATATCC
* * * *
36661290 TTTTCGACCTTTTCTTTTATATCC
1 TTTTTGACATTTTCATTGATATCC
36661314 TTTTTG
1 TTTTTG
36661320 GATAATACCC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.15, C:0.19, G:0.07, T:0.59
Consensus pattern (24 bp):
TTTTTGACATTTTCATTGATATCC
Found at i:36661373 original size:41 final size:41
Alignment explanation
Indices: 36661286--36661387 Score: 127
Period size: 41 Copynumber: 2.5 Consensus size: 41
36661276 TTTCATTGAT
* * * *
36661286 ATCCTTTTCGACCTTTTC-TTTTATATCCTTTTTGGATAAT
1 ATCCTTTTCAACCTTTTCATTTGATATCCTTTTAGGATAAC
*
36661326 ACCCTTTTCAACCTTTTCATTTGATATCCTTTTCAGGA-AAC
1 ATCCTTTTCAACCTTTTCATTTGATATCCTTTT-AGGATAAC
*
36661367 ATCCTTTTCAACCTATTCATT
1 ATCCTTTTCAACCTTTTCATT
36661388 GATTTGAAAA
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
40 16 0.30
41 34 0.64
42 3 0.06
ACGTcount: A:0.22, C:0.25, G:0.06, T:0.48
Consensus pattern (41 bp):
ATCCTTTTCAACCTTTTCATTTGATATCCTTTTAGGATAAC
Found at i:36668842 original size:10 final size:10
Alignment explanation
Indices: 36668826--36668884 Score: 61
Period size: 10 Copynumber: 6.1 Consensus size: 10
36668816 CTATAAAAAA
36668826 TTATAATAAT
1 TTATAATAAT
36668836 TTATAAT-AT
1 TTATAATAAT
36668845 TTATCAAT-AT
1 TTAT-AATAAT
36668855 TTATAA-AAT
1 TTATAATAAT
*
36668864 TTATAAAAAT
1 TTATAATAAT
* *
36668874 TCATAAAAAT
1 TTATAATAAT
36668884 T
1 T
36668885 CAAAATTGTT
Statistics
Matches: 45, Mismatches: 1, Indels: 6
0.87 0.02 0.12
Matches are distributed among these distances:
9 16 0.36
10 29 0.64
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (10 bp):
TTATAATAAT
Found at i:36668879 original size:19 final size:19
Alignment explanation
Indices: 36668821--36668881 Score: 68
Period size: 19 Copynumber: 3.2 Consensus size: 19
36668811 AAAACCTATA
* *
36668821 AAAAATTATAATAATTTAT
1 AAAATTTATAAAAATTTAT
* * *
36668840 AATATTTATCAATATTTAT
1 AAAATTTATAAAAATTTAT
*
36668859 AAAATTTATAAAAATTCAT
1 AAAATTTATAAAAATTTAT
36668878 AAAA
1 AAAA
36668882 ATTCAAAATT
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (19 bp):
AAAATTTATAAAAATTTAT
Found at i:36679685 original size:8 final size:9
Alignment explanation
Indices: 36679667--36679734 Score: 50
Period size: 9 Copynumber: 7.3 Consensus size: 9
36679657 AAAGTATTTT
36679667 AAAATTAAA
1 AAAATTAAA
36679676 AAAATTAAA
1 AAAATTAAA
36679685 AAAGTATTTTAAA
1 AAA--A--TTAAA
* **
36679698 AATATTTTA
1 AAAATTAAA
36679707 AAAA-TAAA
1 AAAATTAAA
*
36679715 AAAAATAAA
1 AAAATTAAA
36679724 AAAA-TAAA
1 AAAATTAAA
36679732 AAA
1 AAA
36679735 TATTTATTAT
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
8 13 0.27
9 26 0.54
11 2 0.04
13 7 0.15
ACGTcount: A:0.74, C:0.00, G:0.01, T:0.25
Consensus pattern (9 bp):
AAAATTAAA
Found at i:36679685 original size:28 final size:31
Alignment explanation
Indices: 36679627--36679698 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 31
36679617 ACCAAAATTT
36679627 TATTTTAAAAATTAAAACAAAAATTAAAAAAAAG
1 TATTTT-AAAATT-AAACAAAAATT-AAAAAAAG
36679661 TATTTTAAAATT-AA-AAAAATT-AAAAAAG
1 TATTTTAAAATTAAACAAAAATTAAAAAAAG
36679689 TATTTTAAAA
1 TATTTTAAAA
36679699 ATATTTTAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
28 17 0.45
30 7 0.18
31 2 0.05
33 6 0.16
34 6 0.16
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (31 bp):
TATTTTAAAATTAAACAAAAATTAAAAAAAG
Found at i:36679698 original size:11 final size:11
Alignment explanation
Indices: 36679683--36679712 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
36679673 AAAAAAATTA
36679683 AAAAAGTATTTT
1 AAAAA-TATTTT
36679695 AAAAATATTTT
1 AAAAATATTTT
36679706 AAAAATA
1 AAAAATA
36679713 AAAAAAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:36682204 original size:30 final size:30
Alignment explanation
Indices: 36682168--36682335 Score: 137
Period size: 30 Copynumber: 5.7 Consensus size: 30
36682158 GGTTGTCACC
*
36682168 ATCCCTTTTCATAGTTTGATAGCCAAACCT
1 ATCCCTTTTCATAGTTCGATAGCCAAACCT
* ***
36682198 ATCCCTTTTCATAGTTCGATGGTCGTCACC-
1 ATCCCTTTTCATAGTTCGATAG-CCAAACCT
* * * *
36682228 ATCCCTTTTCATTGTT-GATGGTCATCACC-
1 ATCCCTTTTCATAGTTCGATAGCCA-AACCT
* * *
36682257 ATCCCTTTTCATAATTCGATAGCCGAAGCT
1 ATCCCTTTTCATAGTTCGATAGCCAAACCT
** * *
36682287 ATCCCTTTTCATA-TTCGATATTCGAAGCT
1 ATCCCTTTTCATAGTTCGATAGCCAAACCT
*
36682316 ATCCCTTTTCATATTTCGAT
1 ATCCCTTTTCATAGTTCGAT
36682336 TGTCGTCACC
Statistics
Matches: 115, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
29 52 0.45
30 59 0.51
31 4 0.03
ACGTcount: A:0.22, C:0.27, G:0.12, T:0.39
Consensus pattern (30 bp):
ATCCCTTTTCATAGTTCGATAGCCAAACCT
Found at i:36682256 original size:29 final size:29
Alignment explanation
Indices: 36682163--36682386 Score: 138
Period size: 29 Copynumber: 7.6 Consensus size: 29
36682153 ACGATGGTTG
* *
36682163 TCACCATCCCTTTTCATAGTTTGATAGCCA
1 TCACCATCCCTTTTCATAG-TTGATGGTCA
* *
36682193 -AACCTATCCCTTTTCATAGTTCGATGGTCG
1 TCACC-ATCCCTTTTCATAGTT-GATGGTCA
*
36682223 TCACCATCCCTTTTCATTGTTGATGGTCA
1 TCACCATCCCTTTTCATAGTTGATGGTCA
* * *
36682252 TCACCATCCCTTTTCATAATTCGATAGCCGA
1 TCACCATCCCTTTTCATAGTT-GATGGTC-A
* **
36682283 --AGCTATCCCTTTTCATA-TTCGATATTCGA
1 TCA-CCATCCCTTTTCATAGTT-GATGGTC-A
* * * *
36682312 --AGCTATCCCTTTTCATATTTCGATTGTCG
1 TCA-CCATCCCTTTTCATAGTT-GATGGTCA
* **
36682341 TCACCATCCCTTTTCATTA-TTGACGGTTG
1 TCACCATCCCTTTTCA-TAGTTGATGGTCA
36682370 TCACCATCCCTTTTCAT
1 TCACCATCCCTTTTCAT
36682387 GAATAGATAG
Statistics
Matches: 163, Mismatches: 21, Indels: 22
0.79 0.10 0.11
Matches are distributed among these distances:
28 1 0.01
29 80 0.49
30 75 0.46
31 7 0.04
ACGTcount: A:0.21, C:0.29, G:0.12, T:0.39
Consensus pattern (29 bp):
TCACCATCCCTTTTCATAGTTGATGGTCA
Found at i:36682275 original size:59 final size:58
Alignment explanation
Indices: 36682154--36682386 Score: 193
Period size: 59 Copynumber: 3.9 Consensus size: 58
36682144 AGTAAAATCA
* * * * *
36682154 CGATGGTTGTCACCATCCCTTTTCATAGTTTGATAGCCAAACCTATCCCTTTTCATAGTT
1 CGATGGTCGTCACCATCCCTTTTCATTG-TTGATAGTCACACC-ATCCCTTTTCATAATT
*
36682214 CGATGGTCGTCACCATCCCTTTTCATTGTTGATGGTCATCACCATCCCTTTTCATAATT
1 CGATGGTCGTCACCATCCCTTTTCATTGTTGATAGTCA-CACCATCCCTTTTCATAATT
* * * * * * * *
36682273 CGATAGCCG-AAGCTATCCCTTTTCATAT-TCGATATTCGA-AGCTATCCCTTTTCATATTT
1 CGATGGTCGTCA-CCATCCCTTTTCAT-TGTTGATAGTC-ACA-CCATCCCTTTTCATAATT
* * ** **
36682332 CGATTGTCGTCACCATCCCTTTTCATTATTGACGGTTGTCACCATCCCTTTTCAT
1 CGATGGTCGTCACCATCCCTTTTCATTGTTGATAG-TCACACCATCCCTTTTCAT
36682387 GAATAGATAG
Statistics
Matches: 138, Mismatches: 26, Indels: 19
0.75 0.14 0.10
Matches are distributed among these distances:
58 3 0.02
59 101 0.73
60 34 0.25
ACGTcount: A:0.20, C:0.28, G:0.13, T:0.39
Consensus pattern (58 bp):
CGATGGTCGTCACCATCCCTTTTCATTGTTGATAGTCACACCATCCCTTTTCATAATT
Found at i:36682345 original size:89 final size:89
Alignment explanation
Indices: 36682155--36682357 Score: 259
Period size: 89 Copynumber: 2.3 Consensus size: 89
36682145 GTAAAATCAC
* * * *
36682155 GATGGTTGTCACCATCCCTTTTCATAGTTTGATAGCCAAACCTATCCCTTTTCATAGTTCGATGG
1 GATGGTCGTCACCATCCCTTTTCATAATTCGATAGCCAAACCTATCCCTTTTCATAGTTCGATAG
*
36682220 TCGTCACCATCCCTTTTCATTGTT
66 TCGTAACCATCCCTTTTCATTGTT
* * * *
36682244 GATGGTCATCACCATCCCTTTTCATAATTCGATAGCCGAAGCTATCCCTTTTCATA-TTCGATAT
1 GATGGTCGTCACCATCCCTTTTCATAATTCGATAGCCAAACCTATCCCTTTTCATAGTTCGATAG
*
36682308 TCG-AAGCTATCCCTTTTCATAT-TT
66 TCGTAA-CCATCCCTTTTCAT-TGTT
*
36682332 CGATTGTCGTCACCATCCCTTTTCAT
1 -GATGGTCGTCACCATCCCTTTTCAT
36682358 TATTGACGGT
Statistics
Matches: 99, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
87 1 0.01
88 24 0.24
89 74 0.75
ACGTcount: A:0.21, C:0.28, G:0.13, T:0.39
Consensus pattern (89 bp):
GATGGTCGTCACCATCCCTTTTCATAATTCGATAGCCAAACCTATCCCTTTTCATAGTTCGATAG
TCGTAACCATCCCTTTTCATTGTT
Found at i:36682407 original size:118 final size:118
Alignment explanation
Indices: 36682168--36682442 Score: 354
Period size: 118 Copynumber: 2.3 Consensus size: 118
36682158 GGTTGTCACC
*
36682168 ATCCCTTTTCATAGTTTGATAGCCAAACCTATCCCTTTTCATAGTTCGATGGTCGTCACCATCCC
1 ATCCCTTTTCATA-TTCGATAGCCAAACCTATCCCTTTTCATAGTTCGATGGTCGTCACCATCCC
* * *
36682233 TTTTCATTGTTGATGGTCATCACCATCCCTTTTCATAATTCGATAGCCGAAGCT
65 TTTTCATTATTGACGGTCATCACCATCCCTTTTCATAATTAGATAGCCGAAGCT
** * * * *
36682287 ATCCCTTTTCATATTCGATATTCGAAGCTATCCCTTTTCATATTTCGATTGTCGTCACCATCCCT
1 ATCCCTTTTCATATTCGATAGCCAAACCTATCCCTTTTCATAGTTCGATGGTCGTCACCATCCCT
** * *
36682352 TTTCATTATTGACGGTTGTCACCATCCCTTTTCATGAA-TAGATAGTCGAATCT
66 TTTCATTATTGACGGTCATCACCATCCCTTTTCAT-AATTAGATAGCCGAAGCT
* * **
36682405 ATCCCTTTTCATATTTTGATAGCTAAAGTTATCCCTTT
1 ATCCCTTTTCATA-TTCGATAGCCAAACCTATCCCTTT
36682443 GTAACAGCCC
Statistics
Matches: 134, Mismatches: 20, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
118 101 0.75
119 33 0.25
ACGTcount: A:0.22, C:0.26, G:0.12, T:0.40
Consensus pattern (118 bp):
ATCCCTTTTCATATTCGATAGCCAAACCTATCCCTTTTCATAGTTCGATGGTCGTCACCATCCCT
TTTCATTATTGACGGTCATCACCATCCCTTTTCATAATTAGATAGCCGAAGCT
Found at i:36683675 original size:25 final size:25
Alignment explanation
Indices: 36683655--36683764 Score: 114
Period size: 25 Copynumber: 4.4 Consensus size: 25
36683645 TTTCAGGTCT
36683655 TATGAGCTTACCGATACTCAGCTCG
1 TATGAGCTTACCGATACTCAGCTCG
*
36683680 TATGAGCTTATCGATACTCAGCTCG
1 TATGAGCTTACCGATACTCAGCTCG
* * *
36683705 TATAAGCTTACCGTTATTCAGCTCAG
1 TATGAGCTTACCGATACTCAGCTC-G
* * * *
36683731 -AGGAGCTTATCGTTATTCAGCTCG
1 TATGAGCTTACCGATACTCAGCTCG
* *
36683755 AAGGAGCTTA
1 TATGAGCTTA
36683765 TCGTTTACAA
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
24 1 0.01
25 73 0.97
26 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (25 bp):
TATGAGCTTACCGATACTCAGCTCG
Found at i:36683737 original size:50 final size:50
Alignment explanation
Indices: 36683659--36683754 Score: 131
Period size: 50 Copynumber: 1.9 Consensus size: 50
36683649 AGGTCTTATG
*
36683659 AGCTTACCGATACTCAGCTCGTATGAGCTTATCGATACTCAGCTCGTATA
1 AGCTTACCGATACTCAGCTCGTAGGAGCTTATCGATACTCAGCTCGTATA
* * * *
36683709 AGCTTACCGTTATTCAGCTCAG-AGGAGCTTATCGTTATTCAGCTCG
1 AGCTTACCGATACTCAGCTC-GTAGGAGCTTATCGATACTCAGCTCG
36683755 AAGGAGCTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
50 39 0.98
51 1 0.03
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (50 bp):
AGCTTACCGATACTCAGCTCGTAGGAGCTTATCGATACTCAGCTCGTATA
Found at i:36683763 original size:50 final size:50
Alignment explanation
Indices: 36683658--36683769 Score: 127
Period size: 50 Copynumber: 2.2 Consensus size: 50
36683648 CAGGTCTTAT
* * * *
36683658 GAGCTTACCGATACTCAGCTCGTATGAGCTTATCGATACTCAGCTCGTAT
1 GAGCTTACCGTTACTCAGCTCGTAGGAGCTTATCGATACTCAGCTCGAAG
* * * *
36683708 AAGCTTACCGTTATTCAGCTCAG-AGGAGCTTATCGTTATTCAGCTCGAAG
1 GAGCTTACCGTTACTCAGCTC-GTAGGAGCTTATCGATACTCAGCTCGAAG
*
36683758 GAGCTTATCGTT
1 GAGCTTACCGTT
36683770 TACAACTTGT
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
50 50 0.98
51 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.31
Consensus pattern (50 bp):
GAGCTTACCGTTACTCAGCTCGTAGGAGCTTATCGATACTCAGCTCGAAG
Found at i:36685220 original size:17 final size:17
Alignment explanation
Indices: 36685198--36685240 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
36685188 GTGTCTCTGG
36685198 GCCGTGTGAGTCACACA
1 GCCGTGTGAGTCACACA
*
36685215 GCCGTGTGAGTCACATA
1 GCCGTGTGAGTCACACA
36685232 GCCGTGTGA
1 GCCGTGTGA
36685241 CCCTTGCAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.21, C:0.26, G:0.33, T:0.21
Consensus pattern (17 bp):
GCCGTGTGAGTCACACA
Found at i:36688114 original size:50 final size:50
Alignment explanation
Indices: 36688008--36688229 Score: 246
Period size: 50 Copynumber: 4.3 Consensus size: 50
36687998 GGGAATGAGA
* *
36688008 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCA---AG---ATGAGAGG
* * *
36688064 TCCTATGTAAGACCATGTCCGGGACATGGTGTTGGCACCAAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGG
*
36688114 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGG
** * * ** * * **
36688164 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGTGCCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGG
36688214 TCCCATGTAAGACCAT
1 TCCCATGTAAGACCAT
36688230 ATTTGGGATA
Statistics
Matches: 146, Mismatches: 20, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
50 109 0.75
53 2 0.01
56 35 0.24
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGG
Found at i:36688237 original size:50 final size:50
Alignment explanation
Indices: 36688008--36688289 Score: 201
Period size: 50 Copynumber: 5.5 Consensus size: 50
36687998 GGGAATGAGA
* * **
36688008 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-C--CGAG---ATGAGAAC
* * ** * * **
36688064 TCCTATGTAAGACCATGTCCGGGACATGGTGTTGGCACCAAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAAC
* * **
36688114 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAAC
** ** *
36688164 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGTGCCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAAC
* * * ** * * *
36688214 TCCCATGTAAGACCATATTTGGGATATGAAATTGGCA--GTACA-GAAAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCG-AGATGAGAAC
*
36688262 ATCCCATGTAAGACTATGTCTGGGACAT
1 -TCCCATGTAAGACCATGTCTGGGACAT
36688290 AGCTTTGGCA
Statistics
Matches: 189, Mismatches: 35, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
48 6 0.03
49 25 0.13
50 122 0.65
53 2 0.01
55 1 0.01
56 33 0.17
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAAC
Found at i:36693702 original size:30 final size:30
Alignment explanation
Indices: 36693660--36693727 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
36693650 AATTCTTGGT
*
36693660 TAAATG-TTTTATTATTTATTTTTGGGGTC
1 TAAATGTTTTTATTATTTAATTTTGGGGTC
*
36693689 TAAATGTTTTTATTTTTTAATTTTGGGGTC
1 TAAATGTTTTTATTATTTAATTTTGGGGTC
36693719 TAAATGTTT
1 TAAATGTTT
36693728 CTTAACAGGG
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
29 6 0.17
30 30 0.83
ACGTcount: A:0.22, C:0.03, G:0.16, T:0.59
Consensus pattern (30 bp):
TAAATGTTTTTATTATTTAATTTTGGGGTC
Found at i:36698219 original size:16 final size:18
Alignment explanation
Indices: 36698200--36698232 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
36698190 AAAATTTCAA
36698200 TAAA-TAAAA-AATATAT
1 TAAATTAAAATAATATAT
36698216 TAAATTAAAATAATATA
1 TAAATTAAAATAATATA
36698233 AATATTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 5 0.33
18 6 0.40
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
TAAATTAAAATAATATAT
Found at i:36698473 original size:36 final size:36
Alignment explanation
Indices: 36698421--36698492 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
36698411 TTTTAGTTCC
* *
36698421 CCTTTGCAGACGATTATAGCAACGAGAGCTTAAACT
1 CCTTTGCAGACAATTATAGCAACAAGAGCTTAAACT
36698457 CCTTTGCAGACAATTATAGCAACAAGAGCTTAAACT
1 CCTTTGCAGACAATTATAGCAACAAGAGCTTAAACT
36698493 AACCTAGAGC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.25
Consensus pattern (36 bp):
CCTTTGCAGACAATTATAGCAACAAGAGCTTAAACT
Found at i:36705922 original size:39 final size:39
Alignment explanation
Indices: 36705879--36706095 Score: 287
Period size: 39 Copynumber: 5.6 Consensus size: 39
36705869 CATTTTCACT
* * *
36705879 TTTAAGTATATATCACATTACACATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* * *
36705918 TTTAAGCATATACCATAATACTCATATAATCACATAAAA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
*
36705957 TTTAAGCATATATCATAATTA-TCATATAATCACATAACA
1 TTTAAGCATATATCACAA-TACTCATATAATCACATAACA
* *
36705996 TTCAAGCATATATCACAATACTTATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* *
36706035 TTCAA--ATATATAACAATACTCATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* *
36706072 TTTAAACATATATCGCAATACTCA
1 TTTAAGCATATATCACAATACTCA
36706096 AAAACATGTT
Statistics
Matches: 158, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
37 34 0.22
38 2 0.01
39 120 0.76
40 2 0.01
ACGTcount: A:0.47, C:0.18, G:0.02, T:0.32
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACTCATATAATCACATAACA
Found at i:36708863 original size:521 final size:522
Alignment explanation
Indices: 36707867--36708915 Score: 1967
Period size: 521 Copynumber: 2.0 Consensus size: 522
36707857 ATGACTAGGT
*
36707867 CTTATACTATTTGGTCTTCGCTTGCCATGGCCATGGACTTCCATATCAGAATTTGTGTTTACTGT
1 CTTACACTATTTGGTCTTCGCTTGCCATGGCCATGGACTTCCATATCAGAATTTGTGTTTACTGT
* * *
36707932 CCTGACGGACTAGCACACGCAAGTAGACTCAACATGCAGACTCATGCCTAACTGACTCATTGTAA
66 CCCGACAGACTAGCACACGCAAGTAGACTCAACATGCAGACTCATGCCTAACTGACTCATTGCAA
*
36707997 TAGACTTCAACATGCAGATGCATTTACGTTTCCAGACATGCAACTCAGACTCATCGTGCAAAAAC
131 TAGACTTCAACATGCAGATGCATTTACGTTTCCAGACATGCAACTCAAACTCATCGTGCAAAAAC
*
36708062 AATCGTACTTTAAGCACACTCATGCATGTGCATACTTTTCAATAGAATAGAGACTTATCATTCAA
196 AATCGTACTTTAAGCACACTCATGCATGCGCATACTTTTCAATAGAATAGAGACTTATCATTCAA
* *
36708127 ATCATGCTTTATTGCATATTCTTTGTTTTCATACTTTTCTTTTCATAACGAAGGTGCATTGTCAT
261 ATCATGCTTTATTGCATATTCATCGTTTTCATACTTTTCTTTTCATAACGAAGGTGCATTGTCAT
36708192 TTAGGCATCAAGCCACACATGCAAGATTATCAGATGCACATTTACACAGAATCAGCATATCACAC
326 TTAGGCATCAAGCCACACATGCAAGATTATCAGATGCACATTTACACAGAATCAGCATATCACAC
36708257 ATGCATAGCTTTCGTTTTGTTTCACAAATCAGTCTTTTAATGTAGAAGAAATAACTATATAAACA
391 ATGCATAGCTTTCGTTTTGTTTCACAAATCAGTCTTTTAATGTAGAAGAAATAACTATATAAACA
*
36708322 TACATGCAACAGAC-AAAAAAAGTTCATAAGGTACTCACAGAACCCTCACATTTTTCTCACATAA
456 TACATGCAACAAACAAAAAAAAGTTCATAAGGTACTCACAGAACCCTCACATTTTTCTCACATAA
36708386 TC
521 TC
36708388 CTTACACTATTTGGTCTTCGCTTGCCATGGCCATGGACTTCCATATCAGAATTTGTGTTTACTGT
1 CTTACACTATTTGGTCTTCGCTTGCCATGGCCATGGACTTCCATATCAGAATTTGTGTTTACTGT
*
36708453 CCCGACAGACTAGCACACGCAAGTAGACTCAACATGCAGACTCATGCCTGACTGACTCATTGCAA
66 CCCGACAGACTAGCACACGCAAGTAGACTCAACATGCAGACTCATGCCTAACTGACTCATTGCAA
36708518 TAGACTTCAACATGCAGATGCATTTACGTTTCCAGACATGCAACTCAAACTCATCGTGCAAAAAC
131 TAGACTTCAACATGCAGATGCATTTACGTTTCCAGACATGCAACTCAAACTCATCGTGCAAAAAC
36708583 AATCGTACTTTAAGCACACTCATGCATGCGCATACTTTTCAATAGAATAGAGACTTATCATTCAA
196 AATCGTACTTTAAGCACACTCATGCATGCGCATACTTTTCAATAGAATAGAGACTTATCATTCAA
36708648 ATCATGCTTTATTGCATATTCATCGTTTTCATAC-TTTCTTTTCATAACGAAGGTGCATTGTCAT
261 ATCATGCTTTATTGCATATTCATCGTTTTCATACTTTTCTTTTCATAACGAAGGTGCATTGTCAT
*
36708712 TTAGGCATCAAGCCACACATGCAAGATTATCAGATGCACATTTACACAGAATCAGTATATCACAC
326 TTAGGCATCAAGCCACACATGCAAGATTATCAGATGCACATTTACACAGAATCAGCATATCACAC
36708777 ATGCATAGCTTTCGTTTTGTTTCACAAATCAGTCTTTTAATGTAGAAGAAATAACTATATAAACA
391 ATGCATAGCTTTCGTTTTGTTTCACAAATCAGTCTTTTAATGTAGAAGAAATAACTATATAAACA
36708842 TACATGCAACAAACAAAAAAAAAAGTTCATAAGGTACTCACAGAACCCTCACATTTTTCTCACAT
456 TACATGCAACAAAC--AAAAAAAAGTTCATAAGGTACTCACAGAACCCTCACATTTTTCTCACAT
36708907 AATC
519 AATC
36708911 CTTAC
1 CTTAC
36708916 CTTTTTCCTC
Statistics
Matches: 514, Mismatches: 11, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
520 172 0.33
521 285 0.55
523 57 0.11
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.31
Consensus pattern (522 bp):
CTTACACTATTTGGTCTTCGCTTGCCATGGCCATGGACTTCCATATCAGAATTTGTGTTTACTGT
CCCGACAGACTAGCACACGCAAGTAGACTCAACATGCAGACTCATGCCTAACTGACTCATTGCAA
TAGACTTCAACATGCAGATGCATTTACGTTTCCAGACATGCAACTCAAACTCATCGTGCAAAAAC
AATCGTACTTTAAGCACACTCATGCATGCGCATACTTTTCAATAGAATAGAGACTTATCATTCAA
ATCATGCTTTATTGCATATTCATCGTTTTCATACTTTTCTTTTCATAACGAAGGTGCATTGTCAT
TTAGGCATCAAGCCACACATGCAAGATTATCAGATGCACATTTACACAGAATCAGCATATCACAC
ATGCATAGCTTTCGTTTTGTTTCACAAATCAGTCTTTTAATGTAGAAGAAATAACTATATAAACA
TACATGCAACAAACAAAAAAAAGTTCATAAGGTACTCACAGAACCCTCACATTTTTCTCACATAA
TC
Found at i:36713044 original size:19 final size:19
Alignment explanation
Indices: 36713022--36713060 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
36713012 ATTAAAAACA
36713022 TATAAAAA-ATGTAAAATTT
1 TATAAAAACA-GTAAAATTT
36713041 TATAAAAACAGTAAAATTT
1 TATAAAAACAGTAAAATTT
36713060 T
1 T
36713061 TTTATAAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 18 0.95
20 1 0.05
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (19 bp):
TATAAAAACAGTAAAATTT
Found at i:36713408 original size:18 final size:17
Alignment explanation
Indices: 36713385--36713435 Score: 57
Period size: 20 Copynumber: 2.8 Consensus size: 17
36713375 ATGTTACAAT
36713385 ATTTTATATTTTTTTACG
1 ATTTTATATTTTTTT-CG
*
36713403 ATTTTATTAATTTTTTTCT
1 ATTTTA-T-ATTTTTTTCG
*
36713422 ATTTTTTATTTTTT
1 ATTTTATATTTTTT
36713436 ATTAAAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
17 7 0.24
18 7 0.24
19 7 0.24
20 8 0.28
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.75
Consensus pattern (17 bp):
ATTTTATATTTTTTTCG
Found at i:36726455 original size:20 final size:20
Alignment explanation
Indices: 36726393--36726455 Score: 51
Period size: 20 Copynumber: 3.1 Consensus size: 20
36726383 ATACTAATAT
36726393 ATAATTATGTTCAACCTTTA
1 ATAATTATGTTCAACCTTTA
* *
36726413 ATTGATATTA--TTCAA-ATAATA
1 A-T-A-ATTATGTTCAACCT-TTA
36726434 ATAATTATGTTCAACCTTTA
1 ATAATTATGTTCAACCTTTA
36726454 AT
1 AT
36726456 TATGTTCAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 14
0.64 0.08 0.28
Matches are distributed among these distances:
18 4 0.12
19 1 0.03
20 12 0.38
21 10 0.31
22 1 0.03
23 4 0.12
ACGTcount: A:0.40, C:0.11, G:0.05, T:0.44
Consensus pattern (20 bp):
ATAATTATGTTCAACCTTTA
Found at i:36727007 original size:15 final size:15
Alignment explanation
Indices: 36726987--36727022 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
36726977 CAAATACCAA
36726987 CAATTAATTTTAGGT
1 CAATTAATTTTAGGT
36727002 CAATTAATTTTAGGT
1 CAATTAATTTTAGGT
36727017 CAATTA
1 CAATTA
36727023 TACATATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.36, C:0.08, G:0.11, T:0.44
Consensus pattern (15 bp):
CAATTAATTTTAGGT
Found at i:36730147 original size:91 final size:92
Alignment explanation
Indices: 36730021--36730213 Score: 316
Period size: 91 Copynumber: 2.1 Consensus size: 92
36730011 TTGATTTTAG
* *
36730021 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAACAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * *
36730086 ATTTAATATTAATTATTTTAAATTGTA
66 ATGTAATAATAATTATTTTAAATTATA
*
36730113 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTAT
1 TAAATTCATATAAGAACAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
36730177 ATGTAATAATAATTATTTTAAATTATA
66 ATGTAATAATAATTATTTTAAATTATA
*
36730204 CAAATTCATA
1 TAAATTCATA
36730214 ATATAATTTA
Statistics
Matches: 94, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
91 78 0.83
92 16 0.17
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAACAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
ATGTAATAATAATTATTTTAAATTATA
Found at i:36730197 original size:26 final size:28
Alignment explanation
Indices: 36730143--36730203 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
36730133 TATTATCAAG
* *
36730143 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
36730171 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
36730197 AATTATA
1 AATTATA
36730204 CAAATTCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:36730203 original size:44 final size:43
Alignment explanation
Indices: 36730061--36730203 Score: 121
Period size: 44 Copynumber: 3.2 Consensus size: 43
36730051 GAATTTTATG
* *
36730061 AAATTATATATCATTATTAAATTATATTTAATATTAATTATTTT
1 AAATTATATATTATTATTAAATTATA-TTAATAATAATTATTTT
* ** * *
36730105 AAATTGTATAAATTCATATAAGAAAATT-TATT-ATCAAGAATT-TTATG
1 AAA-T-TATATATT-AT-T-ATTAAATTATATTAAT-AATAATTATT-TT
36730152 AAATTATATATTATTATTAAATTATATGTAATAATAATTATTTT
1 AAATTATATATTATTATTAAATTATAT-TAATAATAATTATTTT
36730196 AAATTATA
1 AAATTATA
36730204 CAAATTCATA
Statistics
Matches: 76, Mismatches: 12, Indels: 22
0.69 0.11 0.20
Matches are distributed among these distances:
42 6 0.08
43 4 0.05
44 21 0.28
45 12 0.16
46 11 0.14
47 13 0.17
48 3 0.04
49 6 0.08
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.48
Consensus pattern (43 bp):
AAATTATATATTATTATTAAATTATATTAATAATAATTATTTT
Done.