Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 121 of 207
Found at i:36730366 original size:120 final size:120
Alignment explanation
Indices: 36730242--36731018 Score: 1366
Period size: 120 Copynumber: 6.5 Consensus size: 120
36730232 AATTATTTTA
* * *
36730242 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT-AAATTATCTTT
36730306 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
36730362 AATTTTATTAAATTATATATTTTTATTATAATATATTTAATAATAATTATGTT-AATGTGT-TGT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAAT-TATCT-T
36730425 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
64 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
36730482 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATCCTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATCTTTT
* *
36730547 ATAGTTTCATATATTATGATTTGAGTAAATTTATATAAGAATATTAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
36730602 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATCTTTT
36730667 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
36730722 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATCTTTT
36730787 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
36730842 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT-AATATAT-ATT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAAT-TATCTTT
36730905 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
36730961 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATG-TTAAAT
36731019 ATGATTAAAT
Statistics
Matches: 633, Mismatches: 16, Indels: 15
0.95 0.02 0.02
Matches are distributed among these distances:
119 115 0.18
120 511 0.81
121 7 0.01
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATCTTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:36730522 original size:15 final size:15
Alignment explanation
Indices: 36730487--36730538 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
36730477 TTAAGAATTT
*
36730487 TATTAAATTAT-ATA
1 TATTTAATTATAATA
36730501 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
36730515 TATTTAATAATAAT-
1 TATTTAATTATAATA
36730529 TATGTTAATT
1 TAT-TTAATT
36730539 TATCCTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:36730642 original size:15 final size:15
Alignment explanation
Indices: 36730607--36730658 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
36730597 TTAAGAATTT
*
36730607 TATTAAATTAT-ATA
1 TATTTAATTATAATA
36730621 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
36730635 TATTTAATAATAAT-
1 TATTTAATTATAATA
36730649 TATGTTAATT
1 TAT-TTAATT
36730659 TATCTTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:36730762 original size:15 final size:15
Alignment explanation
Indices: 36730727--36730778 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
36730717 TTAAGAATTT
*
36730727 TATTAAATTAT-ATA
1 TATTTAATTATAATA
36730741 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
36730755 TATTTAATAATAAT-
1 TATTTAATTATAATA
36730769 TATGTTAATT
1 TAT-TTAATT
36730779 TATCTTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:36730882 original size:15 final size:15
Alignment explanation
Indices: 36730847--36730902 Score: 55
Period size: 15 Copynumber: 3.8 Consensus size: 15
36730837 TTAAGAATTT
*
36730847 TATTAAATTAT-ATA
1 TATTTAATTATAATA
36730861 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
36730875 TATTTAATAATAAT-
1 TATTTAATTATAATA
36730889 TATGTTAATATATA
1 TAT-TTAAT-TATA
36730903 TTTATAGTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
13 8 0.23
14 8 0.23
15 16 0.46
16 3 0.09
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:36730996 original size:16 final size:16
Alignment explanation
Indices: 36730975--36731016 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
36730965 TTATTAAATT
*
36730975 ATATATTTTAATTATA
1 ATATATTTTAATAATA
36730991 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
36731006 AT-TATGTTTAA
1 ATATAT-TTTAA
36731017 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:36731001 original size:15 final size:15
Alignment explanation
Indices: 36730966--36731007 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
36730956 TTAAGAATTT
*
36730966 TATTAAATTAT-ATA
1 TATTTAATTATAATA
36730980 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
36730994 TATTTAATAATAAT
1 TATTTAATTATAAT
36731008 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:36731249 original size:45 final size:44
Alignment explanation
Indices: 36731157--36731250 Score: 100
Period size: 45 Copynumber: 2.1 Consensus size: 44
36731147 TTACACCTCT
* * *
36731157 ATTACATTCAACCAAACATAAGAATACTATTACGCATCTATTTC
1 ATTACATTCAACCAAACATAAGAATACTATTACACATCTAATCC
** * *
36731201 ATTACATTCAACCAAACAACTAA-TTTGCTATTACACCTCTAATCC
1 ATTACATTCAACCAAAC-A-TAAGAATACTATTACACATCTAATCC
36731246 ATTAC
1 ATTAC
36731251 GCTTTTATTT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
44 17 0.41
45 21 0.51
46 3 0.07
ACGTcount: A:0.39, C:0.26, G:0.03, T:0.32
Consensus pattern (44 bp):
ATTACATTCAACCAAACATAAGAATACTATTACACATCTAATCC
Found at i:36734724 original size:29 final size:29
Alignment explanation
Indices: 36734666--36734762 Score: 88
Period size: 29 Copynumber: 3.3 Consensus size: 29
36734656 CCTAGAGCAA
*
36734666 CCACAAAGGCTTCCACATATAAA-AAGTTCAG
1 CCACAAAGGC-T-CACATA-AAACAAATTCAG
* * ** * *
36734697 CCACTAGGGCTCACATGTAACAGATTCAA
1 CCACAAAGGCTCACATAAAACAAATTCAG
*
36734726 CCACAAAGGCTTACATAAAACAAATTCAG
1 CCACAAAGGCTCACATAAAACAAATTCAG
36734755 CCACAAAG
1 CCACAAAG
36734763 ACATCACTTT
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
28 2 0.04
29 40 0.78
30 1 0.02
31 8 0.16
ACGTcount: A:0.42, C:0.27, G:0.13, T:0.18
Consensus pattern (29 bp):
CCACAAAGGCTCACATAAAACAAATTCAG
Found at i:36734970 original size:54 final size:53
Alignment explanation
Indices: 36734888--36735086 Score: 274
Period size: 54 Copynumber: 3.7 Consensus size: 53
36734878 ACATGACGCA
*
36734888 ATAGTCCCAAACTAGGTCTTACACTATATGGTCTTCATTTCCCCATATGATGTC
1 ATAGT-CCAGACTAGGTCTTACACTATATGGTCTTCATTTCCCCATATGATGTC
* * * * *
36734942 ATAGTCTCAGGCTAGGTCTTATAGTATATAGTCTTCATTTCCCTATATGATGTC
1 ATAGTC-CAGACTAGGTCTTACACTATATGGTCTTCATTTCCCCATATGATGTC
*
36734996 ATAGTCCTAGACTAGGTCTTACACTATATGGTATTCATTTCCCCATATGAT-TC
1 ATAGTCC-AGACTAGGTCTTACACTATATGGTCTTCATTTCCCCATATGATGTC
*
36735049 TATAATCCCAGACTAGGTCTTACACTATATGGTCTTCA
1 -ATAGT-CCAGACTAGGTCTTACACTATATGGTCTTCA
36735087 CTTACCATGT
Statistics
Matches: 127, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
53 4 0.03
54 121 0.95
55 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (53 bp):
ATAGTCCAGACTAGGTCTTACACTATATGGTCTTCATTTCCCCATATGATGTC
Found at i:36742638 original size:43 final size:43
Alignment explanation
Indices: 36742564--36742668 Score: 119
Period size: 43 Copynumber: 2.5 Consensus size: 43
36742554 CTCAGATCAA
36742564 AAAAAGGAAGAAAAAG--AAAAATCAAAAATCAAAATCAAAAAC
1 AAAAA-GAAGAAAAAGAAAAAAATCAAAAATCAAAATCAAAAAC
* * **
36742606 AAAAAGAAGAAAAAAGAAAAAAATC-AAGATCAAGATCAAAATG
1 AAAAAGAAG-AAAAAGAAAAAAATCAAAAATCAAAATCAAAAAC
*
36742649 AAAATG-AGAAAAAGAAAAAA
1 AAAAAGAAGAAAAAGAAAAAA
36742669 GAATGAAAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
41 16 0.29
42 13 0.24
43 19 0.35
44 7 0.13
ACGTcount: A:0.73, C:0.07, G:0.12, T:0.08
Consensus pattern (43 bp):
AAAAAGAAGAAAAAGAAAAAAATCAAAAATCAAAATCAAAAAC
Found at i:36743105 original size:7 final size:7
Alignment explanation
Indices: 36743095--36743132 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
36743085 AAAGAGAGAA
*
36743095 GAAAGAT
1 GAAAAAT
36743102 GAAAAAT
1 GAAAAAT
36743109 G-AAAAT
1 GAAAAAT
36743115 GAAAAAT
1 GAAAAAT
*
36743122 AAAAAAT
1 GAAAAAT
36743129 GAAA
1 GAAA
36743133 GAGTAAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
6 6 0.22
7 21 0.78
ACGTcount: A:0.71, C:0.00, G:0.16, T:0.13
Consensus pattern (7 bp):
GAAAAAT
Found at i:36743142 original size:14 final size:14
Alignment explanation
Indices: 36743100--36743132 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
36743090 GAGAAGAAAG
*
36743100 ATGAAAAAT-GAAA
1 ATGAAAAATAAAAA
36743113 ATGAAAAATAAAAA
1 ATGAAAAATAAAAA
36743127 ATGAAA
1 ATGAAA
36743133 GAGTAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.73, C:0.00, G:0.12, T:0.15
Consensus pattern (14 bp):
ATGAAAAATAAAAA
Found at i:36744497 original size:87 final size:87
Alignment explanation
Indices: 36744348--36744784 Score: 676
Period size: 87 Copynumber: 5.0 Consensus size: 87
36744338 GTGAAGATAA
* **
36744348 AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTGAAGATAGCAGATCTCACCTTCCT
1 AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCT
* *
36744413 GCGTTAACAGCGAAGCAAATCG
66 GCGTTAACAGTGAAGCAGATCG
* * *
36744435 AAAACAAAGCCTTGCCTCCATCGGTTGTAGTAGAGCTGATTAAAGATAGCAGATCTTGCCTTCCT
1 AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCT
* *
36744500 ACGTTAACAATGAAGCAGATCG
66 GCGTTAACAGTGAAGCAGATCG
*
36744522 AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCT
* *
36744587 ACGTTAACAGTGAAGTAGATCG
66 GCGTTAACAGTGAAGCAGATCG
* *
36744609 AAAACAAAGCCTTGCCTCCATCGGTTGTAGTAGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCT
1 AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCT
*
36744674 GCGTTAACAGCGAAGCAGATCG
66 GCGTTAACAGTGAAGCAGATCG
** * *
36744696 AAAATGAAGCCTTGCCTCCATCGTTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCCTCCT
1 AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCT
**
36744761 GCGTCGACAGTGAAGCAGATCG
66 GCGTTAACAGTGAAGCAGATCG
36744783 AA
1 AA
36744785 TATTACAAGT
Statistics
Matches: 319, Mismatches: 31, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 319 1.00
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (87 bp):
AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCT
GCGTTAACAGTGAAGCAGATCG
Found at i:36744538 original size:43 final size:43
Alignment explanation
Indices: 36744489--36744625 Score: 120
Period size: 42 Copynumber: 3.2 Consensus size: 43
36744479 GATAGCAGAT
*
36744489 CTTGCCTTCCTACGTTAACAATGAAGCAGATCGAAAACAAAGC
1 CTTGCCTTCCTACGTTAACAGTGAAGCAGATCGAAAACAAAGC
* * * * * * *
36744532 CTTGCC-TCC-ATCGGTT-GCAGTGGAGCTGGTTGAAGATAGCAGA-T
1 CTTGCCTTCCTA-C-GTTAACAGTGAAGCAGATCGAA-A-A-CAAAGC
*
36744576 CTTGCCTTCCTACGTTAACAGTGAAGTAGATCGAAAACAAAGC
1 CTTGCCTTCCTACGTTAACAGTGAAGCAGATCGAAAACAAAGC
36744619 CTTGCCT
1 CTTGCCT
36744626 CCATCGGTTG
Statistics
Matches: 69, Mismatches: 16, Indels: 18
0.67 0.16 0.17
Matches are distributed among these distances:
41 1 0.01
42 19 0.28
43 18 0.26
44 11 0.16
45 19 0.28
46 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (43 bp):
CTTGCCTTCCTACGTTAACAGTGAAGCAGATCGAAAACAAAGC
Found at i:36745076 original size:44 final size:44
Alignment explanation
Indices: 36744965--36745078 Score: 129
Period size: 44 Copynumber: 2.6 Consensus size: 44
36744955 TCGCATCGGG
* *
36744965 TCTTATCTCCCTGAAGTTGCAGCGGAACAGACTGAAAAAACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAACAGACTGAAAAAACAAA
* ** ** * *
36745009 TCTTATCCCCCTGAAGTCACAGTGGGGCAGACTGAAGAAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAACAGACTGAAAAAACAAA
* *
36745053 TCTTAACTCCCTGAGGTTGCAGTGGA
1 TCTTATCTCCCTGAAGTTGCAGTGGA
36745079 GTACATTGAA
Statistics
Matches: 55, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.22
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAACAGACTGAAAAAACAAA
Found at i:36750460 original size:22 final size:19
Alignment explanation
Indices: 36750435--36750477 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 19
36750425 ATTCAAAATA
36750435 ATTCATAAATCATAACAATATT
1 ATTCA-AAATCAT-AC-ATATT
*
36750457 ATTCAAACTCATACATATT
1 ATTCAAAATCATACATATT
36750476 AT
1 AT
36750478 CCCTTATACG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 7 0.35
20 2 0.10
21 6 0.30
22 5 0.25
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (19 bp):
ATTCAAAATCATACATATT
Found at i:36750768 original size:42 final size:42
Alignment explanation
Indices: 36750717--36750798 Score: 128
Period size: 42 Copynumber: 2.0 Consensus size: 42
36750707 CAAGCCACAT
* * *
36750717 GCCCGTGTACATTTCGAAATGGCCTCACACTCCCGTGTGCCA
1 GCCCGTGTACACTTCGAAATGGCCTCACACGCCCATGTGCCA
*
36750759 GCCCGTGTACCCTTCGAAATGGCCTCACACGCCCATGTGC
1 GCCCGTGTACACTTCGAAATGGCCTCACACGCCCATGTGC
36750799 TAAGCCGTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.18, C:0.38, G:0.22, T:0.22
Consensus pattern (42 bp):
GCCCGTGTACACTTCGAAATGGCCTCACACGCCCATGTGCCA
Found at i:36756043 original size:18 final size:19
Alignment explanation
Indices: 36756006--36756043 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
36755996 TTTACAAGCC
*
36756006 TAGGGGCAAAATCGTAATT
1 TAGGGGCAAAATCATAATT
*
36756025 TAGGGGTAAAA-CATAATT
1 TAGGGGCAAAATCATAATT
36756043 T
1 T
36756044 TTCCAAAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (19 bp):
TAGGGGCAAAATCATAATT
Found at i:36756367 original size:26 final size:26
Alignment explanation
Indices: 36756337--36756418 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
36756327 GATAGGTTGC
36756337 ATGTGTAGTACTATGTACAGGCTACT
1 ATGTGTAGTACTATGTACAGGCTACT
*
36756363 ATGTGTA-T-CGGATGGTA-ATGG-TCAC-
1 ATGTGTAGTAC-TAT-GTACA-GGCT-ACT
* *
36756388 ATGTATAGTACTATGTGCAGGCTACT
1 ATGTGTAGTACTATGTACAGGCTACT
36756414 ATGTG
1 ATGTG
36756419 AACCGAACAT
Statistics
Matches: 42, Mismatches: 5, Indels: 18
0.65 0.08 0.28
Matches are distributed among these distances:
24 1 0.02
25 17 0.40
26 23 0.55
27 1 0.02
ACGTcount: A:0.26, C:0.13, G:0.27, T:0.34
Consensus pattern (26 bp):
ATGTGTAGTACTATGTACAGGCTACT
Found at i:36756402 original size:51 final size:51
Alignment explanation
Indices: 36756279--36756423 Score: 186
Period size: 50 Copynumber: 2.9 Consensus size: 51
36756269 AGTGAAAGTG
* *
36756279 ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAATGAT
** * * *
36756330 A-GGTTGCATGTGTAGTACTATGTACAGGCTACTATGTGTATCGG-ATGGT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAATGAT
* *
36756379 AATGGTCACATGTATAGTACTATGTGCAGGCTACTATGTGAACCG
1 -ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCG
36756424 AACATCATTG
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
49 4 0.05
50 38 0.48
51 37 0.47
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (51 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAATGAT
Found at i:36756511 original size:45 final size:45
Alignment explanation
Indices: 36756420--36756511 Score: 148
Period size: 45 Copynumber: 2.0 Consensus size: 45
36756410 TACTATGTGA
*
36756420 ACCGAACATCATTGATTAATAAGGTGGTTGCTATATGCTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATATGCTGAATCC
* * *
36756465 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGTTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATATGCTGAATCC
36756510 AC
1 AC
36756512 TGAGTATCTG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGCTATATGCTGAATCC
Found at i:36760583 original size:29 final size:29
Alignment explanation
Indices: 36760550--36760675 Score: 137
Period size: 30 Copynumber: 4.3 Consensus size: 29
36760540 ATTTTTCATA
36760550 TTTTCATAGTTGATGGTCGTCACCATCCC
1 TTTTCATAGTTGATGGTCGTCACCATCCC
* * * * * *
36760579 TTTTCATAATTTGATAGCCG-AAGCTATCTC
1 TTTTCAT-AGTTGATGGTCGTCA-CCATCCC
36760609 TTTTCATAGTTCGATGGTCGTCACCATCCC
1 TTTTCATAGTT-GATGGTCGTCACCATCCC
* *
36760639 TTTTCATTGTTGATGGTCTTCACCATCCC
1 TTTTCATAGTTGATGGTCGTCACCATCCC
*
36760668 TTTCCATA
1 TTTTCATA
36760676 ATTTGATAGC
Statistics
Matches: 77, Mismatches: 16, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
29 34 0.44
30 42 0.55
31 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.14, T:0.40
Consensus pattern (29 bp):
TTTTCATAGTTGATGGTCGTCACCATCCC
Found at i:36760612 original size:30 final size:30
Alignment explanation
Indices: 36760574--36760771 Score: 152
Period size: 30 Copynumber: 6.6 Consensus size: 30
36760564 GGTCGTCACC
36760574 ATCCCTTTTCATAATTTGATAGCCGAAGCT
1 ATCCCTTTTCATAATTTGATAGCCGAAGCT
* * * * * * *
36760604 ATCTCTTTTCATAGTTCGATGGTCGTCA-CC
1 ATCCCTTTTCATAATTTGATAGCCG-AAGCT
* *** *
36760634 ATCCCTTTTCAT--TGTTGATGGTCTTCA-CC
1 ATCCCTTTTCATAAT-TTGATAG-CCGAAGCT
* *
36760663 ATCCCTTTCCATAATTTGATAGCTGAAGCT
1 ATCCCTTTTCATAATTTGATAGCCGAAGCT
* * *
36760693 ATCCCATTTCATAATTTGACAGCTGAAGCT
1 ATCCCTTTTCATAATTTGATAGCCGAAGCT
* *
36760723 ATCCCTTTTCATAATTTGAGAGTCGAAGCT
1 ATCCCTTTTCATAATTTGATAGCCGAAGCT
* *
36760753 ATCTCTTTTCATATTTTGA
1 ATCCCTTTTCATAATTTGA
36760772 CAGCTAAAGC
Statistics
Matches: 136, Mismatches: 26, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
28 1 0.01
29 24 0.18
30 109 0.80
31 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATAGCCGAAGCT
Found at i:36760727 original size:89 final size:89
Alignment explanation
Indices: 36760550--36760735 Score: 232
Period size: 89 Copynumber: 2.1 Consensus size: 89
36760540 ATTTTTCATA
* * *
36760550 TTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAATTTGATAGCCGAAGCTATCTCTTTTCA
1 TTTTCATAGTTGATGGTCGTCACCATCCCTTTCCATAATTTGATAGCCGAAGCTATCCCATTTCA
* * * *
36760615 TAGTTCGATGGTCGTCACCATCCC
66 TAATTCGAAGCTCGTAACCATCCC
* * *
36760639 TTTTCATTGTTGATGGTCTTCACCATCCCTTTCCATAATTTGATAGCTGAAGCTATCCCATTTCA
1 TTTTCATAGTTGATGGTCGTCACCATCCCTTTCCATAATTTGATAGCCGAAGCTATCCCATTTCA
* *
36760704 TAATTTGACAGCT-G-AAGCTATCCC
66 TAATTCGA-AGCTCGTAA-CCATCCC
36760728 TTTTCATA
1 TTTTCATA
36760736 ATTTGAGAGT
Statistics
Matches: 82, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
88 1 0.01
89 79 0.96
90 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.39
Consensus pattern (89 bp):
TTTTCATAGTTGATGGTCGTCACCATCCCTTTCCATAATTTGATAGCCGAAGCTATCCCATTTCA
TAATTCGAAGCTCGTAACCATCCC
Found at i:36760736 original size:60 final size:60
Alignment explanation
Indices: 36760663--36760781 Score: 168
Period size: 60 Copynumber: 2.0 Consensus size: 60
36760653 GGTCTTCACC
* *
36760663 ATCCCTTTCCATAATTTGATAG-CTGAAGCTATCCCATTTCATAATTTGACAGCTGAAGCT
1 ATCCCTTTCCATAATTTGAGAGTC-GAAGCTATCCCATTTCATAATTTGACAGCTAAAGCT
* * * *
36760723 ATCCCTTTTCATAATTTGAGAGTCGAAGCTATCTCTTTTCATATTTTGACAGCTAAAGC
1 ATCCCTTTCCATAATTTGAGAGTCGAAGCTATCCCATTTCATAATTTGACAGCTAAAGC
36760782 AATCATTTTC
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
60 51 0.98
61 1 0.02
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (60 bp):
ATCCCTTTCCATAATTTGAGAGTCGAAGCTATCCCATTTCATAATTTGACAGCTAAAGCT
Found at i:36760791 original size:29 final size:29
Alignment explanation
Indices: 36760666--36760791 Score: 137
Period size: 30 Copynumber: 4.2 Consensus size: 29
36760656 CTTCACCATC
* *
36760666 CCTTTCCATAATTTGATAGCTGAAGCTAT
1 CCTTTTCATAATTTGACAGCTGAAGCTAT
*
36760695 CCCATTTCATAATTTGACAGCTGAAGCTAT
1 -CCTTTTCATAATTTGACAGCTGAAGCTAT
*
36760725 CCCTTTTCATAATTTGAGAG-TCGAAGCTAT
1 -CCTTTTCATAATTTGACAGCT-GAAGCTAT
* * *
36760755 CTCTTTTCATATTTTGACAGCTAAAGCAAT
1 C-CTTTTCATAATTTGACAGCTGAAGCTAT
*
36760785 CATTTTC
1 CCTTTTC
36760792 CATTGGTCAA
Statistics
Matches: 83, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
29 7 0.08
30 75 0.90
31 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (29 bp):
CCTTTTCATAATTTGACAGCTGAAGCTAT
Found at i:36765125 original size:30 final size:30
Alignment explanation
Indices: 36765050--36765252 Score: 139
Period size: 30 Copynumber: 6.8 Consensus size: 30
36765040 GTAAAATCAC
* *
36765050 GATGGTTGTCACCATCCCTTTTCATAATTC
1 GATGGTCGTCACCATCCCTTTTCATAATTT
* * * * *
36765080 GATAGCCG-AAGCTATCCCTTTTCATATTTT
1 GATGGTCGTCA-CCATCCCTTTTCATAATTT
* * * *
36765110 GATGGTTGTCACTATCCTTTTTCAT-AGTT
1 GATGGTCGTCACCATCCCTTTTCATAATTT
* *
36765139 AATGGTCGTCACCATTCCTTTTCATAATTT
1 GATGGTCGTCACCATCCCTTTTCATAATTT
* * * * * *
36765169 GATAGCCG-AAGC-TACCCATTTTCATAGTTC
1 GATGGTCGTCACCAT-CCC-TTTTCATAATTT
*
36765199 GATGGTCGTTACCATCCCTTTTCAT--TGTT
1 GATGGTCGTCACCATCCCTTTTCATAAT-TT
*
36765228 GATGGTCGTCACAATCCCTTTTCAT
1 GATGGTCGTCACCATCCCTTTTCAT
36765253 TATGTGGCAG
Statistics
Matches: 130, Mismatches: 35, Indels: 17
0.71 0.19 0.09
Matches are distributed among these distances:
28 2 0.02
29 51 0.39
30 70 0.54
31 6 0.05
32 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (30 bp):
GATGGTCGTCACCATCCCTTTTCATAATTT
Found at i:36765170 original size:59 final size:59
Alignment explanation
Indices: 36765093--36765252 Score: 164
Period size: 59 Copynumber: 2.7 Consensus size: 59
36765083 AGCCGAAGCT
* *
36765093 ATCCCTTTTCATATTTTGATGGTTGTCACTATCCTTTTTCATAGTT-AATGGTCGTCACC
1 ATCCCTTTTCATA-TTTGATGGTCGTCACTATCCATTTTCATAGTTCAATGGTCGTCACC
* * * * * * *
36765152 ATTCCTTTTCATAATTTGATAGCCG-AAGCTACCCATTTTCATAGTTCGATGGTCGTTACC
1 ATCCCTTTTCAT-ATTTGATGGTCGTCA-CTATCCATTTTCATAGTTCAATGGTCGTCACC
* *
36765212 ATCCCTTTTCAT-TGTTGATGGTCGTCACAATCCCTTTTCAT
1 ATCCCTTTTCATAT-TTGATGGTCGTCACTATCCATTTTCAT
36765253 TATGTGGCAG
Statistics
Matches: 80, Mismatches: 16, Indels: 10
0.75 0.15 0.09
Matches are distributed among these distances:
58 2 0.03
59 54 0.68
60 24 0.30
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (59 bp):
ATCCCTTTTCATATTTGATGGTCGTCACTATCCATTTTCATAGTTCAATGGTCGTCACC
Found at i:36765305 original size:89 final size:88
Alignment explanation
Indices: 36765050--36765308 Score: 286
Period size: 89 Copynumber: 2.9 Consensus size: 88
36765040 GTAAAATCAC
*
36765050 GATGGTTGTCACCATCCCTTTTCATAATTCGATAGCCGAAGCTATCCCTTTTCATATTTTGATGG
1 GATGGTCGTCACCATCCCTTTTCATAATT-GATAGCCGAAGCTATCCCTTTTCATATTTTGATGG
* * *
36765115 TTGTCACTATCCTTTTTCATAGTT
65 TCGTAACTATCCCTTTTCATAGTT
* * * *
36765139 AATGGTCGTCACCATTCCTTTTCATAATTTGATAGCCGAAGCTA-CCCATTTTCATAGTTCGATG
1 GATGGTCGTCACCATCCCTTTTCATAA-TTGATAGCCGAAGCTATCCC-TTTTCATATTTTGATG
* * *
36765203 GTCGTTACCATCCCTTTTCATTGTT
64 GTCGTAACTATCCCTTTTCATAGTT
* * ** * * **
36765228 GATGGTCGTCACAATCCCTTTTCATTATGTGGCAGCTGAGGCTATCCCTTTTCATATTTTGACAG
1 GATGGTCGTCACCATCCCTTTTCATAAT-TGATAGCCGAAGCTATCCCTTTTCATATTTTGATGG
* *
36765293 CCGAAACTATCCCTTT
65 TCGTAACTATCCCTTT
36765309 CTAATGGTCG
Statistics
Matches: 140, Mismatches: 26, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
88 4 0.03
89 131 0.94
90 5 0.04
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.39
Consensus pattern (88 bp):
GATGGTCGTCACCATCCCTTTTCATAATTGATAGCCGAAGCTATCCCTTTTCATATTTTGATGGT
CGTAACTATCCCTTTTCATAGTT
Found at i:36767356 original size:43 final size:43
Alignment explanation
Indices: 36767290--36767400 Score: 134
Period size: 43 Copynumber: 2.6 Consensus size: 43
36767280 CTCCTGAGGT
* **
36767290 GTGATTTCGTGTAAGACCATGTCTGGGA-AATTGGCATCGATAC
1 GTGATTACGTGTAAGACCATGTCTAAGACAA-TGGCATCGATAC
* *
36767333 GTGATTACGTGTAAGACCCTGTCTAAGACAATGGCATCGATAT
1 GTGATTACGTGTAAGACCATGTCTAAGACAATGGCATCGATAC
* * *
36767376 GTGATAACATGTAAGACCATATCTA
1 GTGATTACGTGTAAGACCATGTCTA
36767401 GGATATGACA
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
43 56 0.97
44 2 0.03
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (43 bp):
GTGATTACGTGTAAGACCATGTCTAAGACAATGGCATCGATAC
Found at i:36775962 original size:30 final size:31
Alignment explanation
Indices: 36775923--36775982 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
36775913 GGAGGTGAGA
*
36775923 TGGGAAGGGAATAAAAGTTTT-AGGGGAAAAG
1 TGGGAAGGGAATAAAAATTTTGA-GGGAAAAG
*
36775954 TGGG-AGGGAGTAAAAATTTTGAGGGAAAA
1 TGGGAAGGGAATAAAAATTTTGAGGGAAAA
36775983 TAAAAGGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.42, C:0.00, G:0.38, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTGAGGGAAAAG
Found at i:36779496 original size:40 final size:41
Alignment explanation
Indices: 36779451--36779547 Score: 135
Period size: 40 Copynumber: 2.4 Consensus size: 41
36779441 ATCTTCAAGG
36779451 ATATGCAATCTTAGATATGATATGCAATCTT-AGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCTTGAGATATGAT
*
36779491 ATATGCAATCTTGGATATGATATGCAATCTTGGAAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCTT-G-AGATATGAT
* *
36779534 -TTTGTAATCTTAGA
1 ATATGCAATCTTAGA
36779548 GATTTAATTT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
40 30 0.60
42 11 0.22
43 9 0.18
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (41 bp):
ATATGCAATCTTAGATATGATATGCAATCTTGAGATATGAT
Found at i:36779524 original size:19 final size:19
Alignment explanation
Indices: 36779450--36779521 Score: 117
Period size: 19 Copynumber: 3.7 Consensus size: 19
36779440 AATCTTCAAG
36779450 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
36779469 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
36779488 GATATATGCAATCTTGGATAT
1 G--ATATGCAATCTTAGATAT
36779509 GATATGCAATCTT
1 GATATGCAATCTT
36779522 GGAAGATATG
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
19 32 0.64
21 18 0.36
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:36783901 original size:18 final size:18
Alignment explanation
Indices: 36783878--36783918 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
36783868 CATATTGCCC
36783878 AAAAAAAGATGGCACAAA
1 AAAAAAAGATGGCACAAA
*
36783896 AAAAAAAGATGGCGCAAA
1 AAAAAAAGATGGCACAAA
36783914 AAAAA
1 AAAAA
36783919 CTCTACCGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.68, C:0.10, G:0.17, T:0.05
Consensus pattern (18 bp):
AAAAAAAGATGGCACAAA
Found at i:36785582 original size:44 final size:42
Alignment explanation
Indices: 36785507--36785783 Score: 266
Period size: 44 Copynumber: 6.3 Consensus size: 42
36785497 GCAGGTCCTA
* *
36785507 TCTTCCTATATTGGTAGGAAGTGGATTGAAGATGCAGATCTTG
1 TCTTCCTATATTGGT-GGAAGTAGATCGAAGATGCAGATCTTG
* * *
36785550 TCTTCCCATATTGGTGGCAGAGTAGATCGAAGAAAGTAGATCTTG
1 TCTTCCTATATTGGTGG-A-AGTAGATCGAAG-ATGCAGATCTTG
* * * * * *
36785595 TCTTCATGTATTGGTGTGACGTAGATCAAAGATAGCAGGTCCTG
1 TCTTCCTATATTGGTG-GAAGTAGATCGAAGAT-GCAGATCTTG
*
36785639 TCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTG
1 TCTTCCTATATTGGT-GGAAGTAGATCGAAGATGCAGATCTTG
* * **
36785682 TCTTCCCATATTGGTGGCGGAGTAGATCGAAGAAAACAGATCTTG
1 TCTTCCTATATTGGT-G-GAAGTAGATCGAAG-ATGCAGATCTTG
* * * *
36785727 TCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTG
1 TCTTCCTATATTGGTG-GAAGTAGATCGAAGAT-GCAGATCTTG
36785771 TCTTCCTATATTG
1 TCTTCCTATATTG
36785784 AAGACACTAG
Statistics
Matches: 187, Mismatches: 38, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
42 2 0.01
43 40 0.21
44 98 0.52
45 46 0.25
46 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (42 bp):
TCTTCCTATATTGGTGGAAGTAGATCGAAGATGCAGATCTTG
Found at i:36785728 original size:132 final size:132
Alignment explanation
Indices: 36785491--36785783 Score: 505
Period size: 132 Copynumber: 2.2 Consensus size: 132
36785481 CAGATCAGTG
* *
36785491 AAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATTGAAGATGCAGATCTTGTCTTCC
1 AAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCC
** * *
36785556 CATATTGGTGGCAGAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGTGTGACGTAGAT
66 CATATTGGTGGCAGAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGAT
36785621 CA
131 CA
36785623 AAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCC
1 AAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCC
*
36785688 CATATTGGTGGCGGAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGAT
66 CATATTGGTGGCAGAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGAT
*
36785753 CG
131 CA
*
36785755 AAGATAGCAGATCCTGTCTTCCTATATTG
1 AAGATAGCAGGTCCTGTCTTCCTATATTG
36785784 AAGACACTAG
Statistics
Matches: 152, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 152 1.00
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (132 bp):
AAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCC
CATATTGGTGGCAGAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGAT
CA
Found at i:36785931 original size:44 final size:44
Alignment explanation
Indices: 36785795--36786021 Score: 102
Period size: 44 Copynumber: 5.2 Consensus size: 44
36785785 AGACACTAGC
* *
36785795 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGAT
1 CTTGCCTCCCTGGGTTGCAGCGGAGCAAGTTAAAAATAGCAAAT
* ***** * ** * * * **
36785839 CTTGCCTTCCTGCACCAACAGCGAAGC-AGATCGAAGACA-CCAGC
1 CTTGCCTCCCTG-GGTTGCAGCGGAGCAAG-TTAAAAATAGCAAAT
36785883 CTTGCCTCCCTGGGTTGCAGCGGAGCAAGTTAAAAATAGCAAAT
1 CTTGCCTCCCTGGGTTGCAGCGGAGCAAGTTAAAAATAGCAAAT
* * **** * * * * * **
36785927 CTTGCCTTCTTGCACCGGCAGCGAAGC-AGATCAAAGACA-CCAGC
1 CTTGCCTCCCTG-GGTTGCAGCGGAGCAAG-TTAAAAATAGCAAAT
* * *
36785971 CTTGCCTCCCTAGGTTGCAGCGGAGCAGGTTAAAAATAGCAGAT
1 CTTGCCTCCCTGGGTTGCAGCGGAGCAAGTTAAAAATAGCAAAT
36786015 CTTGCCT
1 CTTGCCT
36786022 TCCTACACCG
Statistics
Matches: 116, Mismatches: 59, Indels: 16
0.61 0.31 0.08
Matches are distributed among these distances:
43 28 0.24
44 60 0.52
45 28 0.24
ACGTcount: A:0.27, C:0.28, G:0.25, T:0.20
Consensus pattern (44 bp):
CTTGCCTCCCTGGGTTGCAGCGGAGCAAGTTAAAAATAGCAAAT
Found at i:36785998 original size:43 final size:43
Alignment explanation
Indices: 36785857--36785998 Score: 101
Period size: 43 Copynumber: 3.3 Consensus size: 43
36785847 CCTGCACCAA
* *
36785857 CAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
1 CAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTAGGTTG
* * * * * ** * * *
36785900 CAGCGGAGCA-AGTTAAAAATAGCAAATCTTGCCTTCTTGCACCG--G
1 CAGCGAAGCAGA-TCAAAGACA-CCAGCCTTGCCTCCCT--A-GGTTG
36785945 CAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTAGGTTG
1 CAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTAGGTTG
*
36785988 CAGCGGAGCAG
1 CAGCGAAGCAG
36785999 GTTAAAAATA
Statistics
Matches: 68, Mismatches: 23, Indels: 16
0.64 0.21 0.15
Matches are distributed among these distances:
41 1 0.01
42 2 0.03
43 25 0.37
44 22 0.32
45 16 0.24
46 1 0.01
47 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.26, T:0.17
Consensus pattern (43 bp):
CAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTAGGTTG
Found at i:36786069 original size:88 final size:88
Alignment explanation
Indices: 36785783--36786048 Score: 451
Period size: 88 Copynumber: 3.0 Consensus size: 88
36785773 TTCCTATATT
*
36785783 GAAGACACTAGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGATCTTGCCTTC
1 GAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGATCTTGCCTTC
*
36785848 CTGCACCAACAGCGAAGCAGATC
66 CTGCACCGACAGCGAAGCAGATC
* *
36785871 GAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCGGAGCAAGTTAAAAATAGCAAATCTTGCCTTC
1 GAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGATCTTGCCTTC
* *
36785936 TTGCACCGGCAGCGAAGCAGATC
66 CTGCACCGACAGCGAAGCAGATC
* *
36785959 AAAGACACCAGCCTTGCCTCCCTAGGTTGCAGCGGAGCAGGTTAAAAATAGCAGATCTTGCCTTC
1 GAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGATCTTGCCTTC
*
36786024 CTACACCGACAGCGAAGCAGATC
66 CTGCACCGACAGCGAAGCAGATC
36786047 GA
1 GA
36786049 TAACCCTAAC
Statistics
Matches: 164, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
88 164 1.00
ACGTcount: A:0.28, C:0.29, G:0.24, T:0.19
Consensus pattern (88 bp):
GAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGATCTTGCCTTC
CTGCACCGACAGCGAAGCAGATC
Found at i:36786121 original size:44 final size:44
Alignment explanation
Indices: 36786059--36786235 Score: 273
Period size: 44 Copynumber: 4.0 Consensus size: 44
36786049 TAACCCTAAC
* * *
36786059 CCTATCTCCCTGGACAGCAGTGGAATAGGATAAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* *
36786103 CCTATCTCCCGGGTCAGCAGTGGAATAGGCTGAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
*
36786147 CCTATCTCACTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* * *
36786191 CCTATCTCTCTGGTTAGCAGTGGAATAGGTTGAAGATTGCGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
36786235 C
1 C
36786236 TTACTTTCCT
Statistics
Matches: 123, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 123 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (44 bp):
CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
Found at i:36786719 original size:40 final size:40
Alignment explanation
Indices: 36786674--36786764 Score: 103
Period size: 40 Copynumber: 2.2 Consensus size: 40
36786664 AAGGATATAA
36786674 AATCTTAGATACGATATGCAATCTT-AGATATGATATATGC
1 AATCTTAGATACGATATGCAATCTTGAGATATGAT-TATGC
* * * * *
36786714 AATCTTGGATATGGTATGCAATCTTGGAAGATATGATTTTGT
1 AATCTTAGATACGATATGCAATCTT-G-AGATATGATTATGC
36786756 AATCTTAGA
1 AATCTTAGA
36786765 GATTTAATTT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
40 22 0.52
42 11 0.26
43 9 0.21
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.37
Consensus pattern (40 bp):
AATCTTAGATACGATATGCAATCTTGAGATATGATTATGC
Found at i:36786741 original size:19 final size:19
Alignment explanation
Indices: 36786674--36786738 Score: 85
Period size: 19 Copynumber: 3.3 Consensus size: 19
36786664 AAGGATATAA
*
36786674 AATCTTAGATACGATATGC
1 AATCTTAGATATGATATGC
36786693 AATCTTAGATATGATATATGC
1 AATCTTAGATATG--ATATGC
* *
36786714 AATCTTGGATATGGTATGC
1 AATCTTAGATATGATATGC
36786733 AATCTT
1 AATCTT
36786739 GGAAGATATG
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
19 23 0.56
21 18 0.44
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (19 bp):
AATCTTAGATATGATATGC
Found at i:36788932 original size:20 final size:20
Alignment explanation
Indices: 36788886--36788932 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
36788876 AGCTCGTTTC
*
36788886 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
36788906 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
36788926 CAGCTCA
1 CAGCTCA
36788933 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:36807345 original size:13 final size:13
Alignment explanation
Indices: 36807327--36807362 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
36807317 ATTCATTTAA
* *
36807327 CATTTCACATCTT
1 CATTTCAAATATT
36807340 CATTTCAAATATT
1 CATTTCAAATATT
36807353 CATTTCAAAT
1 CATTTCAAAT
36807363 GTCCCTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.33, C:0.22, G:0.00, T:0.44
Consensus pattern (13 bp):
CATTTCAAATATT
Found at i:36807441 original size:40 final size:40
Alignment explanation
Indices: 36807397--36807472 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
36807387 AAATAAACAT
36807397 TTCATAAAAACACTTC-ATATAACTATTTCCATATAATCGA
1 TTCATAAAAACA-TTCTATATAACTATTTCCATATAATCGA
* * * *
36807437 TTCATAAAATCATTCTGTATATCTATTTTCATATAA
1 TTCATAAAAACATTCTATATAACTATTTCCATATAA
36807473 CAATTTCGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.10
40 28 0.90
ACGTcount: A:0.39, C:0.17, G:0.03, T:0.41
Consensus pattern (40 bp):
TTCATAAAAACATTCTATATAACTATTTCCATATAATCGA
Found at i:36807484 original size:13 final size:13
Alignment explanation
Indices: 36807463--36807520 Score: 62
Period size: 13 Copynumber: 4.5 Consensus size: 13
36807453 GTATATCTAT
36807463 TTTCATATAACAA
1 TTTCATATAACAA
* * *
36807476 TTTCGTATATCTA
1 TTTCATATAACAA
36807489 TTTCATATAACAA
1 TTTCATATAACAA
* * *
36807502 TTTCTTATATCTA
1 TTTCATATAACAA
36807515 TTTCAT
1 TTTCAT
36807521 TTTATACATT
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
13 35 1.00
ACGTcount: A:0.33, C:0.16, G:0.02, T:0.50
Consensus pattern (13 bp):
TTTCATATAACAA
Found at i:36807499 original size:26 final size:26
Alignment explanation
Indices: 36807453--36807520 Score: 118
Period size: 26 Copynumber: 2.6 Consensus size: 26
36807443 AAATCATTCT
36807453 GTATATCTATTTTCATATAACAATTTC
1 GTATATCTA-TTTCATATAACAATTTC
36807480 GTATATCTATTTCATATAACAATTTC
1 GTATATCTATTTCATATAACAATTTC
*
36807506 TTATATCTATTTCAT
1 GTATATCTATTTCAT
36807521 TTTATACATT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
26 31 0.77
27 9 0.22
ACGTcount: A:0.32, C:0.15, G:0.03, T:0.50
Consensus pattern (26 bp):
GTATATCTATTTCATATAACAATTTC
Found at i:36807994 original size:19 final size:20
Alignment explanation
Indices: 36807958--36807995 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
36807948 TAAAATTGAT
36807958 TAAACAATAATTTGGAAAAA
1 TAAACAATAATTTGGAAAAA
* *
36807978 TAAA-AATATTTTTGAAAA
1 TAAACAATAATTTGGAAAA
36807996 TTTAATTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.58, C:0.03, G:0.08, T:0.32
Consensus pattern (20 bp):
TAAACAATAATTTGGAAAAA
Found at i:36808240 original size:23 final size:23
Alignment explanation
Indices: 36808210--36808255 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
36808200 AATTGGTAAA
36808210 GTAAGGGAAATGTGAGAGTGGTT
1 GTAAGGGAAATGTGAGAGTGGTT
36808233 GTAAGGGAAATGTGAGAGTGGTT
1 GTAAGGGAAATGTGAGAGTGGTT
36808256 ATTGGGCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.00, G:0.43, T:0.26
Consensus pattern (23 bp):
GTAAGGGAAATGTGAGAGTGGTT
Found at i:36811018 original size:101 final size:102
Alignment explanation
Indices: 36810898--36811082 Score: 293
Period size: 101 Copynumber: 1.8 Consensus size: 102
36810888 AAAGTGATGG
* *
36810898 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGAATGAT-A-GGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GAATGATAATGGTCACATGTGTAGT
*
36810961 ACTATGTGCAGGCTACTATGCGTACCAGATAGTTTCGA
65 ACTATGTGCAAGCTACTATGCGTACCAGATAGTTTCGA
* * *
36810999 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGGTAATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATGATAATGGTCACATGTGTAGTA
36811064 CTATGTGCAAGCTACTATG
66 CTATGTGCAAGCTACTATG
36811083 TGAATCAAAC
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
100 5 0.07
101 38 0.50
102 33 0.43
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.31
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATGATAATGGTCACATGTGTAGTA
CTATGTGCAAGCTACTATGCGTACCAGATAGTTTCGA
Found at i:36811029 original size:51 final size:51
Alignment explanation
Indices: 36810894--36811084 Score: 235
Period size: 51 Copynumber: 3.8 Consensus size: 51
36810884 AGTGAAAGTG
* *
36810894 ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGA-A-TG
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGATAGTA
* *
36810943 ATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGT-
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGATAGTA
* * * * * * *
36810994 TTCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGGTA
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGATAGTA
*
36811046 ATGGTCACATGTGTAGTACTATGTGCAAGCTACTATGTG
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTG
36811085 AATCAAACAT
Statistics
Matches: 120, Mismatches: 18, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
49 2 0.02
50 41 0.34
51 75 0.62
52 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (51 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGATAGTA
Found at i:36811084 original size:26 final size:26
Alignment explanation
Indices: 36811004--36811084 Score: 62
Period size: 26 Copynumber: 3.2 Consensus size: 26
36810994 TTCGATCACG
*
36811004 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAAGCTACTA
* * * *
36811030 CGTGTA-T-CGGATG-GTAATGGTCAC-A
1 TGTGTAGTAC-TATGTGCAA-GCT-ACTA
36811055 TGTGTAGTACTATGTGCAAGCTACTA
1 TGTGTAGTACTATGTGCAAGCTACTA
36811081 TGTG
1 TGTG
36811085 AATCAAACAT
Statistics
Matches: 39, Mismatches: 9, Indels: 14
0.63 0.15 0.23
Matches are distributed among these distances:
24 3 0.08
25 14 0.36
26 18 0.46
27 4 0.10
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAAGCTACTA
Found at i:36811142 original size:45 final size:45
Alignment explanation
Indices: 36811091--36811178 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
36811081 TGTGAATCAA
* *
36811091 ACATCATTAATTAGTAAGGTGGTTGCTATGTGCTGATTCCACCAG
1 ACATCATTAATTAATAAGGTGGTTGCTATGTGCTGAATCCACCAG
*
36811136 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACC
1 ACATCATTAATTAATAAGGTGGTTGCTATGTGCTGAATCCACC
36811179 GAGTATCTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (45 bp):
ACATCATTAATTAATAAGGTGGTTGCTATGTGCTGAATCCACCAG
Found at i:36817028 original size:25 final size:25
Alignment explanation
Indices: 36816974--36817085 Score: 97
Period size: 25 Copynumber: 4.6 Consensus size: 25
36816964 TTACCAATTC
* * * *
36816974 CAGCTCTTATGAGCTTACTGATACT
1 CAGCTCGTATGAGCTTACCGTTATT
36816999 CAGCTCGTATGAGCTTACCGTTATT
1 CAGCTCGTATGAGCTTACCGTTATT
* * *
36817024 TAGCTCG-AAGAAGCTTACCATTA-T
1 CAGCTCGTATG-AGCTTACCGTTATT
* *
36817048 CAGCTCGGAGGAGCTTACCGTT-TAT
1 CAGCTCGTATGAGCTTACCGTTAT-T
36817073 -AGCTCGTATGAGC
1 CAGCTCGTATGAGC
36817086 ATACATGTAC
Statistics
Matches: 71, Mismatches: 12, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
24 30 0.42
25 41 0.58
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.31
Consensus pattern (25 bp):
CAGCTCGTATGAGCTTACCGTTATT
Found at i:36817085 original size:24 final size:24
Alignment explanation
Indices: 36817000--36817085 Score: 86
Period size: 24 Copynumber: 3.5 Consensus size: 24
36816990 ACTGATACTC
*
36817000 AGCTCGTATGAGCTTACCGTTATTT
1 AGCTCGTATGAGCTTACCGTT-TAT
* *
36817025 AGCTCG-AAGAAGCTTACC-ATTAT
1 AGCTCGTATG-AGCTTACCGTTTAT
* *
36817048 CAGCTCGGAGGAGCTTACCGTTTAT
1 -AGCTCGTATGAGCTTACCGTTTAT
36817073 AGCTCGTATGAGC
1 AGCTCGTATGAGC
36817086 ATACATGTAC
Statistics
Matches: 50, Mismatches: 7, Indels: 9
0.76 0.11 0.14
Matches are distributed among these distances:
23 2 0.04
24 28 0.56
25 20 0.40
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.30
Consensus pattern (24 bp):
AGCTCGTATGAGCTTACCGTTTAT
Found at i:36817287 original size:27 final size:26
Alignment explanation
Indices: 36817255--36817324 Score: 70
Period size: 27 Copynumber: 2.5 Consensus size: 26
36817245 CTGATGGTAC
36817255 ATGATATAT-TGATATATTGAAATGGAG
1 ATGATATATGT-ATATA-TGAAATGGAG
36817282 ATGATATATGTATATGATGAAATGGTAAG
1 ATGATATATGTATAT-ATGAAATGG--AG
*
36817311 ATAATAATATGTAT
1 ATGAT-ATATGTAT
36817325 CATGACATGT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
27 21 0.57
28 2 0.05
29 6 0.16
30 8 0.22
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (26 bp):
ATGATATATGTATATATGAAATGGAG
Found at i:36818677 original size:22 final size:23
Alignment explanation
Indices: 36818652--36818701 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
36818642 GTGCCTTTTG
*
36818652 AGGGCTTAT-GTATATG-TGCAAA
1 AGGGATTATAGTATATGTTG-AAA
36818674 AGGGATTATAGGTATATGTTGAAA
1 AGGGATTATA-GTATATGTTGAAA
36818698 AGGG
1 AGGG
36818702 TGAGAGAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 8 0.33
24 14 0.58
25 2 0.08
ACGTcount: A:0.34, C:0.04, G:0.32, T:0.30
Consensus pattern (23 bp):
AGGGATTATAGTATATGTTGAAA
Found at i:36824178 original size:26 final size:27
Alignment explanation
Indices: 36824148--36824204 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
36824138 AAATATTCTC
*
36824148 TAAATTAAT-AAATATTAATTTATCGA
1 TAAATTAATAAAATATTAAGTTATCGA
* *
36824174 TAAATTAATAAAATATTCAGTTATTGA
1 TAAATTAATAAAATATTAAGTTATCGA
36824201 TAAA
1 TAAA
36824205 CTAAAAACCT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 9 0.33
27 18 0.67
ACGTcount: A:0.51, C:0.04, G:0.05, T:0.40
Consensus pattern (27 bp):
TAAATTAATAAAATATTAAGTTATCGA
Found at i:36825289 original size:85 final size:85
Alignment explanation
Indices: 36825136--36825312 Score: 327
Period size: 85 Copynumber: 2.1 Consensus size: 85
36825126 TTTGTGCGGA
*
36825136 TATTGCTAAAATCATATTTAAAACACAACCAGGCTTAGTAGATTCAGCACAAATCAATTGACCAT
1 TATTTCTAAAATCATATTTAAAACACAACCAGGCTTAGTAGATTCAGCACAAATCAATTGACCAT
36825201 TCTAACATCTCAAATCAATG
66 TCTAACATCTCAAATCAATG
* *
36825221 TATTTCTAAAATCATATTTAAAACACAACCAGGCTTAGTATATTCAGCACAAATCAATTGACCGT
1 TATTTCTAAAATCATATTTAAAACACAACCAGGCTTAGTAGATTCAGCACAAATCAATTGACCAT
36825286 TCTAACATCTCAAATCAATG
66 TCTAACATCTCAAATCAATG
36825306 TATTTCT
1 TATTTCT
36825313 GATAACAATT
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 89 1.00
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (85 bp):
TATTTCTAAAATCATATTTAAAACACAACCAGGCTTAGTAGATTCAGCACAAATCAATTGACCAT
TCTAACATCTCAAATCAATG
Found at i:36831460 original size:13 final size:13
Alignment explanation
Indices: 36831333--36831462 Score: 57
Period size: 13 Copynumber: 9.8 Consensus size: 13
36831323 CTATATCCAA
*
36831333 ATAAGCATTTCAT
1 ATAACCATTTCAT
* * *
36831346 AAAAACACTTCAT
1 ATAACCATTTCAT
* *
36831359 ATAACTATTTCTTT
1 ATAACCATTTC-AT
36831373 ATAACCGA-TTCAT
1 ATAACC-ATTTCAT
* * ** *
36831386 AAAATCATCCCGT
1 ATAACCATTTCAT
* *
36831399 ATATCTATTTCTAT
1 ATAACCATTTC-AT
*
36831413 ATAACTTATTT-AT
1 ATAAC-CATTTCAT
*
36831426 ATAACCATTTCAG
1 ATAACCATTTCAT
*
36831439 GTAACCATTTCAT
1 ATAACCATTTCAT
*
36831452 ATAAACATTTC
1 ATAACCATTTC
36831463 GTTTGACATT
Statistics
Matches: 82, Mismatches: 29, Indels: 12
0.67 0.24 0.10
Matches are distributed among these distances:
12 5 0.06
13 57 0.70
14 14 0.17
15 6 0.07
ACGTcount: A:0.38, C:0.19, G:0.04, T:0.39
Consensus pattern (13 bp):
ATAACCATTTCAT
Found at i:36831582 original size:25 final size:25
Alignment explanation
Indices: 36831548--36831613 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
36831538 GCTAGAACGA
*
36831548 TGCTCACACAAGTTGTAACTATTAT
1 TGCTCACACAAGTTGTAACTATAAT
* * *
36831573 TGCTCACACAAGCTGTAGCTGTAAT
1 TGCTCACACAAGTTGTAACTATAAT
* *
36831598 TGCTTACACGAGTTGT
1 TGCTCACACAAGTTGT
36831614 GGGTCGAGAT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.33
Consensus pattern (25 bp):
TGCTCACACAAGTTGTAACTATAAT
Found at i:36836818 original size:41 final size:40
Alignment explanation
Indices: 36836698--36836821 Score: 142
Period size: 41 Copynumber: 3.0 Consensus size: 40
36836688 CATCAAAGCA
* * ***
36836698 AATATATTGGCACATAAGGGCATCATCAAAAGAACCAGAA-T
1 AATATACTGGCACATAAGTGCATCAT-TGGAGAACCA-AAGT
* *
36836739 AATATACTGGCACATAAGTGCATCACTGGACAAACCAAAGT
1 AATATACTGGCACATAAGTGCATCATTGGA-GAACCAAAGT
36836780 AATATACTGGCACATAAGTGCATCATTGGAGAAGCCAAAGT
1 AATATACTGGCACATAAGTGCATCATTGGAGAA-CCAAAGT
36836821 A
1 A
36836822 TATCGATGCG
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
40 5 0.07
41 66 0.93
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.20
Consensus pattern (40 bp):
AATATACTGGCACATAAGTGCATCATTGGAGAACCAAAGT
Found at i:36836858 original size:20 final size:20
Alignment explanation
Indices: 36836833--36836874 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
36836823 ATCGATGCGG
36836833 TTAACTAAGATAGAATCTCA
1 TTAACTAAGATAGAATCTCA
36836853 TTAACTAAGATAGAATCTCA
1 TTAACTAAGATAGAATCTCA
36836873 TT
1 TT
36836875 CTCTGTAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.33
Consensus pattern (20 bp):
TTAACTAAGATAGAATCTCA
Found at i:36839627 original size:18 final size:18
Alignment explanation
Indices: 36839606--36839649 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
36839596 AAAGGAAGAC
36839606 AGAAAAAGA-AATCGAAAA
1 AGAAAAAGAGAAT-GAAAA
36839624 AGAAAAAGAGAATGAAAA
1 AGAAAAAGAGAATGAAAA
36839642 AGAGAAAA
1 AGA-AAAA
36839650 AAGAGATTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 17 0.71
19 7 0.29
ACGTcount: A:0.73, C:0.02, G:0.20, T:0.05
Consensus pattern (18 bp):
AGAAAAAGAGAATGAAAA
Found at i:36842897 original size:33 final size:34
Alignment explanation
Indices: 36842860--36842931 Score: 119
Period size: 33 Copynumber: 2.1 Consensus size: 34
36842850 GAGTTAGTTT
36842860 ATTAAATTTAGTTCAGCTCAAATAAGTGTTAG-A
1 ATTAAATTTAGTTCAGCTCAAATAAGTGTTAGTA
* *
36842893 ATTAATTTTAGTTCAGCTTAAATAAGTGTTAGTA
1 ATTAAATTTAGTTCAGCTCAAATAAGTGTTAGTA
36842927 ATTAA
1 ATTAA
36842932 TTTGTTTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
33 30 0.83
34 6 0.17
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.40
Consensus pattern (34 bp):
ATTAAATTTAGTTCAGCTCAAATAAGTGTTAGTA
Found at i:36844374 original size:29 final size:29
Alignment explanation
Indices: 36844331--36844395 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
36844321 GCATTTTCAG
36844331 CCATTCCAATCTTCAAGAATCTATTCGACA
1 CCATT-CAATCTTCAAGAATCTATTCGACA
36844361 CCATTCAATCTTCAAGAATCTATTCGACA
1 CCATTCAATCTTCAAGAATCTATTCGACA
36844390 CCATTC
1 CCATTC
36844396 TTGGCATTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 30 0.86
30 5 0.14
ACGTcount: A:0.32, C:0.31, G:0.06, T:0.31
Consensus pattern (29 bp):
CCATTCAATCTTCAAGAATCTATTCGACA
Found at i:36851541 original size:209 final size:209
Alignment explanation
Indices: 36851181--36851590 Score: 757
Period size: 209 Copynumber: 2.0 Consensus size: 209
36851171 TCATGCATGT
*
36851181 GCATCAAAATGAATACACCTTCCTTTGTGCATTACCTCTATACCTAGATCGAAAAAAAGAGGTAT
1 GCATCAAAATGAATACACCTTCCTTTGTGCATTAACTCTATACCTAGATCGAAAAAAAGAGGTAT
*
36851246 CAGAGTGTTGATACGTATGATGGTGAAAAGAAGAAACGGGAATCATTATGATATGTTTTGCCTTT
66 CAGAGTGTTGATACGTATGATGGTCAAAAGAAGAAACGGGAATCATTATGATATGTTTTGCCTTT
36851311 GGTATGGCACATTGATGCAAACCGTGATTGGTGAATACCAGGCCTTACGGAGTAAACCTGTCCAT
131 GGTATGGCACATTGATGCAAACCGTGATTGGTGAATACCAGGCCTTACGGAGTAAACCTGTCCAT
36851376 GGGCCGTCGGGCCG
196 GGGCCGTCGGGCCG
*
36851390 GCATCAAAATGAATACTCCTTCCTTTGTGCATTAACTCTATACCTAGATCGAAAAAAAGAGGTAT
1 GCATCAAAATGAATACACCTTCCTTTGTGCATTAACTCTATACCTAGATCGAAAAAAAGAGGTAT
* *
36851455 CAGAGTGTTGATACGTATGATGGTCAAAAGAAGAAACGGGAATCATTATTATATGTTTTGCTTTT
66 CAGAGTGTTGATACGTATGATGGTCAAAAGAAGAAACGGGAATCATTATGATATGTTTTGCCTTT
* *
36851520 GGTATGGCACATTGATGCAAACCGTGATTGGTGAATACCAGGCCTTGCGGAGTAGACCTGTCCAT
131 GGTATGGCACATTGATGCAAACCGTGATTGGTGAATACCAGGCCTTACGGAGTAAACCTGTCCAT
36851585 GGGCCG
196 GGGCCG
36851591 GGCAGTCCGA
Statistics
Matches: 194, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
209 194 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (209 bp):
GCATCAAAATGAATACACCTTCCTTTGTGCATTAACTCTATACCTAGATCGAAAAAAAGAGGTAT
CAGAGTGTTGATACGTATGATGGTCAAAAGAAGAAACGGGAATCATTATGATATGTTTTGCCTTT
GGTATGGCACATTGATGCAAACCGTGATTGGTGAATACCAGGCCTTACGGAGTAAACCTGTCCAT
GGGCCGTCGGGCCG
Found at i:36851742 original size:5 final size:5
Alignment explanation
Indices: 36851726--36851763 Score: 58
Period size: 5 Copynumber: 7.2 Consensus size: 5
36851716 CCACTTTTTT
36851726 GGCCC GGGCCC GGCCC GGCCCC GGCCC GGCCC GGCCC G
1 GGCCC -GGCCC GGCCC GG-CCC GGCCC GGCCC GGCCC G
36851764 AATATAATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 21 0.68
6 10 0.32
ACGTcount: A:0.00, C:0.58, G:0.42, T:0.00
Consensus pattern (5 bp):
GGCCC
Found at i:36851742 original size:11 final size:11
Alignment explanation
Indices: 36851726--36851763 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
36851716 CCACTTTTTT
36851726 GGCCCGGGCCC
1 GGCCCGGGCCC
*
36851737 GGCCCGGCCCC
1 GGCCCGGGCCC
36851748 GGCCC-GGCCC
1 GGCCCGGGCCC
36851758 GGCCCG
1 GGCCCG
36851764 AATATAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 9 0.38
11 15 0.62
ACGTcount: A:0.00, C:0.58, G:0.42, T:0.00
Consensus pattern (11 bp):
GGCCCGGGCCC
Found at i:36851751 original size:16 final size:16
Alignment explanation
Indices: 36851726--36851762 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
36851716 CCACTTTTTT
*
36851726 GGCCCGGGCCCGGCCC
1 GGCCCCGGCCCGGCCC
36851742 GGCCCCGGCCCGGCCC
1 GGCCCCGGCCCGGCCC
36851758 GGCCC
1 GGCCC
36851763 GAATATAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.00, C:0.59, G:0.41, T:0.00
Consensus pattern (16 bp):
GGCCCCGGCCCGGCCC
Found at i:36851827 original size:38 final size:40
Alignment explanation
Indices: 36851771--36851849 Score: 117
Period size: 39 Copynumber: 2.0 Consensus size: 40
36851761 CCGAATATAA
*
36851771 TAAATATATATTTTTTA-TTTTTTAATTTTAAAATACTTT
1 TAAATATATATTTTTTATTTTTTTAATTTTAAAATAATTT
* *
36851810 TAAA-ATATTTTTTTTATTTTTTTATTTTTAAAATAATTT
1 TAAATATATATTTTTTATTTTTTTAATTTTAAAATAATTT
36851849 T
1 T
36851850 TTAATGTTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
38 11 0.31
39 25 0.69
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (40 bp):
TAAATATATATTTTTTATTTTTTTAATTTTAAAATAATTT
Found at i:36854871 original size:30 final size:30
Alignment explanation
Indices: 36854762--36854873 Score: 136
Period size: 30 Copynumber: 3.7 Consensus size: 30
36854752 CCTTTGAAAA
*
36854762 AGATTGCCACAAAGGCTT-CTTTTTTAACAG
1 AGATCGCCACAAAGGCTTCCTTTTTT-ACAG
* ** * *
36854792 AGATCGCTACAAAACCTTTCTTTTTAACAG
1 AGATCGCCACAAAGGCTTCCTTTTTTACAG
**
36854822 AGATCAACACAAAGGCTTCCTTTTTTACAG
1 AGATCGCCACAAAGGCTTCCTTTTTTACAG
36854852 AGATCGCCACAAAGGCTTCCTT
1 AGATCGCCACAAAGGCTTCCTT
36854874 ACGGAAATTG
Statistics
Matches: 67, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
30 61 0.91
31 6 0.09
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (30 bp):
AGATCGCCACAAAGGCTTCCTTTTTTACAG
Found at i:36856545 original size:10 final size:11
Alignment explanation
Indices: 36856520--36856553 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
36856510 TAATGTGTTT
36856520 TAAGTTTGGTG
1 TAAGTTTGGTG
36856531 TAAGTTTGG-G
1 TAAGTTTGGTG
36856541 TAAGTTTAGGTG
1 TAAGTTT-GGTG
36856553 T
1 T
36856554 GTTTTGGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 8 0.38
11 11 0.52
12 2 0.10
ACGTcount: A:0.21, C:0.00, G:0.35, T:0.44
Consensus pattern (11 bp):
TAAGTTTGGTG
Found at i:36858202 original size:20 final size:20
Alignment explanation
Indices: 36858179--36858217 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
36858169 CGATGTCAAA
36858179 GGTCAGGTATTGATACCTTG
1 GGTCAGGTATTGATACCTTG
*
36858199 GGTCAGGTATTGGTACCTT
1 GGTCAGGTATTGATACCTT
36858218 TAAGTAGGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.18, C:0.15, G:0.31, T:0.36
Consensus pattern (20 bp):
GGTCAGGTATTGATACCTTG
Found at i:36858887 original size:19 final size:19
Alignment explanation
Indices: 36858863--36858916 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
36858853 AATATTCAAG
36858863 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
36858882 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
36858901 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
36858917 AGATATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:36858905 original size:38 final size:40
Alignment explanation
Indices: 36858863--36858939 Score: 113
Period size: 38 Copynumber: 1.9 Consensus size: 40
36858853 AATATTCAAG
36858863 GATATGCAATCTT-AGATATGA-TATGTAATCTTAGATAT
1 GATATGCAATCTTAAGATATGATTATGTAATCTTAGATAT
*
36858901 GATATGCAATCTTAGAAGATATGATTTTGTAATCTTAGA
1 GATATGCAATCTT--AAGATATGATTATGTAATCTTAGA
36858940 GATTTAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 13 0.38
41 8 0.24
42 13 0.38
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (40 bp):
GATATGCAATCTTAAGATATGATTATGTAATCTTAGATAT
Found at i:36859487 original size:23 final size:21
Alignment explanation
Indices: 36859451--36859493 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
36859441 ATATATTGTT
*
36859451 TTATATATAGTATACGTATGC
1 TTATATATAGTATACATATGC
36859472 TTATATATAGTTTATACATATG
1 TTATATATAG--TATACATATG
36859494 TTTTTCTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 10 0.53
23 9 0.47
ACGTcount: A:0.35, C:0.07, G:0.12, T:0.47
Consensus pattern (21 bp):
TTATATATAGTATACATATGC
Found at i:36860876 original size:14 final size:15
Alignment explanation
Indices: 36860851--36860879 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
36860841 AATGTATTTA
36860851 TAAAAGTAAAAAAAT
1 TAAAAGTAAAAAAAT
36860866 TAAAA-TAAAAAAAT
1 TAAAAGTAAAAAAAT
36860880 AAATCTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (15 bp):
TAAAAGTAAAAAAAT
Found at i:36867669 original size:15 final size:15
Alignment explanation
Indices: 36867649--36867680 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
36867639 ATGCTAATTG
36867649 TGCCTGTGAAGTACA
1 TGCCTGTGAAGTACA
36867664 TGCCTGTGAAGTACA
1 TGCCTGTGAAGTACA
36867679 TG
1 TG
36867681 TCATAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (15 bp):
TGCCTGTGAAGTACA
Found at i:36868759 original size:19 final size:19
Alignment explanation
Indices: 36868737--36868791 Score: 52
Period size: 19 Copynumber: 3.3 Consensus size: 19
36868727 TAGATAATTA
36868737 ATTATTTATTATATATATT
1 ATTATTTATTATATATATT
*
36868756 ATTA--TA-TA-A-ACA-T
1 ATTATTTATTATATATATT
36868769 -TTATTTATTATATATATT
1 ATTATTTATTATATATATT
36868787 ATTAT
1 ATTAT
36868792 GTATGTTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 14
0.63 0.05 0.33
Matches are distributed among these distances:
12 3 0.11
13 1 0.04
14 4 0.15
15 3 0.11
16 3 0.11
17 4 0.15
18 1 0.04
19 8 0.30
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (19 bp):
ATTATTTATTATATATATT
Found at i:36868949 original size:18 final size:17
Alignment explanation
Indices: 36868922--36868956 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
36868912 TAAAAATAAT
*
36868922 TATTACATATTTATATTA
1 TATTAAATATTTA-ATTA
36868940 TATTAAATATTTAATTA
1 TATTAAATATTTAATTA
36868957 GATAAATAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (17 bp):
TATTAAATATTTAATTA
Found at i:36871582 original size:52 final size:52
Alignment explanation
Indices: 36871504--36871605 Score: 195
Period size: 52 Copynumber: 2.0 Consensus size: 52
36871494 AAATAAACGG
*
36871504 AAGTTAAAAGAATATATATTCGTAGATTGGTTTTGCATTTGAAAAGTTTTAA
1 AAGTTAAAAGAATATATATCCGTAGATTGGTTTTGCATTTGAAAAGTTTTAA
36871556 AAGTTAAAAGAATATATATCCGTAGATTGGTTTTGCATTTGAAAAGTTTT
1 AAGTTAAAAGAATATATATCCGTAGATTGGTTTTGCATTTGAAAAGTTTT
36871606 GATTATAAGT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.37, C:0.05, G:0.18, T:0.40
Consensus pattern (52 bp):
AAGTTAAAAGAATATATATCCGTAGATTGGTTTTGCATTTGAAAAGTTTTAA
Found at i:36888829 original size:22 final size:22
Alignment explanation
Indices: 36888781--36888830 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
36888771 TTTCAGCTGT
*
36888781 TATTGTAGGAATATTCTGTAAA
1 TATTTTAGGAATATTCTGTAAA
* *
36888803 TATTTTAGGAATATTTTGTAGA
1 TATTTTAGGAATATTCTGTAAA
36888825 TATTTT
1 TATTTT
36888831 CTTTATTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.32, C:0.02, G:0.16, T:0.50
Consensus pattern (22 bp):
TATTTTAGGAATATTCTGTAAA
Found at i:36892587 original size:22 final size:22
Alignment explanation
Indices: 36892559--36892603 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
36892549 AGGGGGAGTG
36892559 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
36892581 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
36892603 T
1 T
36892604 CTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:36899406 original size:25 final size:25
Alignment explanation
Indices: 36899376--36899428 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
36899366 TCGATGGGAG
36899376 AAAGTGCATTGATTGCTGTTTTTCA
1 AAAGTGCATTGATTGCTGTTTTTCA
36899401 AAAGTGCATTGATTGCTGTTTTTCA
1 AAAGTGCATTGATTGCTGTTTTTCA
36899426 AAA
1 AAA
36899429 TTTGTACCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.28, C:0.11, G:0.19, T:0.42
Consensus pattern (25 bp):
AAAGTGCATTGATTGCTGTTTTTCA
Found at i:36909948 original size:12 final size:13
Alignment explanation
Indices: 36909925--36909953 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
36909915 AAAATAAGGT
36909925 TTAAAATGATGAA
1 TTAAAATGATGAA
36909938 TTAAAAT-ATGAA
1 TTAAAATGATGAA
36909950 TTAA
1 TTAA
36909954 TTTATCTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.34
Consensus pattern (13 bp):
TTAAAATGATGAA
Found at i:36910113 original size:19 final size:19
Alignment explanation
Indices: 36910089--36910125 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
36910079 CGAGGATATA
36910089 AATCTTAGATATGATATGC
1 AATCTTAGATATGATATGC
36910108 AATCTTAGATATGATATG
1 AATCTTAGATATGATATG
36910126 ATATATGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.38
Consensus pattern (19 bp):
AATCTTAGATATGATATGC
Found at i:36910138 original size:45 final size:43
Alignment explanation
Indices: 36910084--36910186 Score: 129
Period size: 45 Copynumber: 2.3 Consensus size: 43
36910074 ATTTTCGAGG
*
36910084 ATATAAATCTTAGATATG-ATATGCAATCTTAGATATGATATGAT
1 ATATAAATCTTAGATATGAATATACAATCTTAGA-A-GATATGAT
36910128 ATATGAAATCTTAGATATGATATATACAATCTTAGAAGATATGAT
1 ATAT-AAATCTTAGATATGA-ATATACAATCTTAGAAGATATGAT
*
36910173 -TTTATAATCTTAGA
1 ATATA-AATCTTAGA
36910187 AATTTAATTT
Statistics
Matches: 53, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
43 1 0.02
44 15 0.28
45 22 0.42
46 1 0.02
47 14 0.26
ACGTcount: A:0.42, C:0.07, G:0.13, T:0.39
Consensus pattern (43 bp):
ATATAAATCTTAGATATGAATATACAATCTTAGAAGATATGAT
Found at i:36910185 original size:23 final size:24
Alignment explanation
Indices: 36910095--36910187 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 24
36910085 TATAAATCTT
*
36910095 AGATATG--ATATGCAATCTTAGA
1 AGATATGATATATACAATCTTAGA
36910117 TATGATATGATATATGA-AATCTT---
1 -A-GATATGATATAT-ACAATCTTAGA
36910140 AGATATGATATATACAATCTTAGA
1 AGATATGATATATACAATCTTAGA
* *
36910164 AGATATGAT-TTTATAATCTTAGA
1 AGATATGATATATACAATCTTAGA
36910187 A
1 A
36910188 ATTTAATTTG
Statistics
Matches: 59, Mismatches: 3, Indels: 16
0.76 0.04 0.21
Matches are distributed among these distances:
20 1 0.02
21 18 0.31
22 1 0.02
23 14 0.24
24 15 0.25
26 10 0.17
ACGTcount: A:0.42, C:0.06, G:0.14, T:0.38
Consensus pattern (24 bp):
AGATATGATATATACAATCTTAGA
Found at i:36910632 original size:13 final size:13
Alignment explanation
Indices: 36910610--36910643 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
36910600 CAACATTTGT
*
36910610 TTTTTTTTATTTA
1 TTTTTCTTATTTA
36910623 TTTTTCTTATTTA
1 TTTTTCTTATTTA
36910636 TTTTTCTT
1 TTTTTCTT
36910644 TCTACTACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.12, C:0.06, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTTTCTTATTTA
Found at i:36911197 original size:27 final size:24
Alignment explanation
Indices: 36911142--36911229 Score: 88
Period size: 23 Copynumber: 3.5 Consensus size: 24
36911132 TAGAGTAATC
* *
36911142 ATTATTTTTTATGTATATATGT-A
1 ATTATTTTATATATATATATGTAA
36911165 ATTATTTTATATATATATATGTACA
1 ATTATTTTATATATATATATGTA-A
* *
36911190 GATTTATTATATATATGTATATGTAA
1 -A-TTATTTTATATATATATATGTAA
36911216 ATATATTGTTATAT
1 AT-TATT-TTATAT
36911230 TTTTTAAAAT
Statistics
Matches: 54, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
23 20 0.37
24 1 0.02
25 6 0.11
26 7 0.13
27 20 0.37
ACGTcount: A:0.36, C:0.01, G:0.08, T:0.55
Consensus pattern (24 bp):
ATTATTTTATATATATATATGTAA
Found at i:36911337 original size:15 final size:13
Alignment explanation
Indices: 36911302--36911346 Score: 54
Period size: 13 Copynumber: 3.3 Consensus size: 13
36911292 GCTCACATAC
36911302 ATATATATTTTTA
1 ATATATATTTTTA
*
36911315 ATACATATTTTTA
1 ATATATATTTTTA
*
36911328 ATCTATATATTTTTT
1 A--TATATATTTTTA
36911343 ATAT
1 ATAT
36911347 TTTTCTTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
13 16 0.59
15 11 0.41
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (13 bp):
ATATATATTTTTA
Found at i:36914656 original size:6 final size:6
Alignment explanation
Indices: 36914645--36914677 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
36914635 GGCAAGACTC
36914645 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAA
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAA
36914678 TGAGGTGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:36917610 original size:44 final size:44
Alignment explanation
Indices: 36917270--36917888 Score: 165
Period size: 44 Copynumber: 14.1 Consensus size: 44
36917260 CCAAGCCTTG
* * * * * * *
36917270 TCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGACTGCAAATCTTA
* * * * *
36917314 TCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGGAAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGACTGCAAATCTTA
* * * * ** ** *
36917358 TCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGT
1 TC-TCCCTAAGCAGTAGT-GG-AGAAGATTGAAGACTGCAAATCTT-A
* * * * * * * * *
36917403 TCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGACTGCAAATCTTA
* * *
36917447 TCTCCTTAAGCAGTAGTGGAGCAGATCGAAGAC-GACAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGACTG-CAAATCTTA
* * * * ** ** *
36917491 TCTTTCC-AAG-A-TAGTGGGAAGTAGATTTAAGCCACCAAGCCTTG
1 TC-TCCCTAAGCAGTAGT-GG-AGAAGATTGAAGACTGCAAATCTTA
* ** * * * *
36917535 TCTCCCTGAGCAGTAGCAGAGTAGGTTGAAGATTGTAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGACTGCAAATCTTA
* *
36917579 TCTCCCTAAGCAGTAGTGGAGAAGATCGAAGACGGCAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGACTGCAAATCTTA
* * * * ** ** *
36917623 TCAT-TCTAAG-A-TAGTGGGAAGCAGATTTAAGCCACCAAGCCTTG
1 TC-TCCCTAAGCAGTAGT-GG-AGAAGATTGAAGACTGCAAATCTTA
* * * * * * * * *
36917667 TCTCCCTGAGCAGCAGCGAAGTAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGACTGCAAATCTTA
* *
36917711 TCTCCCTAAGCAGTAGTGGAGAAGATCGAAGA-TGGAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGACTGCAAATCTTA
* * * ** *
36917754 TCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCACT--AAGCCTTG
1 TC-TCCCTAAGCAGTAGT-GG-AGAAGATTGAAG--ACTGCAAATCTTA
* * * * * * *
36917798 TCTCCCTAAGCAGCAGCGGAGTAGGTTAAAGATTGTC-GATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGACTG-CAAATCTTA
* * ** *
36917842 TCTCCCTAAGCAATAGTGGAGCAGATCAAAGACGGCAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGACTGCAAATCTTA
36917886 TCT
1 TCT
36917889 TTCCAAGATA
Statistics
Matches: 396, Mismatches: 145, Indels: 68
0.65 0.24 0.11
Matches are distributed among these distances:
41 4 0.01
42 17 0.04
43 41 0.10
44 291 0.73
45 30 0.08
46 11 0.03
47 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (44 bp):
TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGACTGCAAATCTTA
Found at i:36917848 original size:263 final size:263
Alignment explanation
Indices: 36917258--36918056 Score: 1285
Period size: 263 Copynumber: 3.0 Consensus size: 263
36917248 ACTGGTGAAA
*
36917258 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* *
36917323 GTAGTAGTGGAGCAGATCGAAGACGGAAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
* * *
36917388 GCCACCAAGCCTTGTTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCT
131 GCCACCAAGCCTTG-TCTCCCTGAGCAGCAGCGAAGTAGGTTGAAGATTGTAGATCTTATCTCCC
* *
36917453 TAAGCAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATT
195 TAAGCAGTAGTGGAGCAGATCGAAGACG-GAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATT
36917518 TAAGC
259 TAAGC
* * *
36917523 CACCAAGCCTTGTCTCCCTGAGCAGTAGCAGAGTAGGTTGAAGATTGTAAATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* * *
36917588 GCAGTAGTGGAGAAGATCGAAGACGGCAAATCTTATCATTCTAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
36917653 GCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGAAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
131 GCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGAAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
* *
36917718 AAGCAGTAGTGGAGAAGATCGAAGATGGAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA
196 AAGCAGTAGTGGAGCAGATCGAAGACGGAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA
36917783 AGC
261 AGC
* * * *
36917786 CACTAAGCCTTGTCTCCCTAAGCAGCAGCGGAGTAGGTTAAAGATTGTCGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* *
36917851 GCAATAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
* * * *
36917916 GCCACCAAGCCTTGTCTTCCTGAGTAGCAGC-AGAGTAGGTTGAAGATTATAAATCTTATCTCCC
131 GCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGA-AGTAGGTTGAAGATTGTAGATCTTATCTCCC
* * *
36917980 TAAGCAGTAGTGGAGCAGATCGAGGACGGTAAATCTTATCTTTCCAAGATAGAGGGAAGCAGTTT
195 TAAGCAGTAGTGGAGCAGATCGAAGACGG-AAATCTTATCTTTCCAAGATAGTGGGAAGCAGATT
36918045 TAAGC
259 TAAGC
*
36918050 CAGCAAG
1 CACCAAG
36918057 TCTTATCCTC
Statistics
Matches: 493, Mismatches: 39, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
262 1 0.00
263 241 0.49
264 116 0.24
265 135 0.27
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (263 bp):
CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
GCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGAAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
AAGCAGTAGTGGAGCAGATCGAAGACGGAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA
AGC
Found at i:36918070 original size:132 final size:132
Alignment explanation
Indices: 36917258--36918056 Score: 1294
Period size: 132 Copynumber: 6.1 Consensus size: 132
36917248 ACTGGTGAAA
*
36917258 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* *
36917323 GTAGTAGTGGAGCAGATCGAAGACGGAAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
36917388 GC
131 GC
* *
36917390 CACCAAGCCTTGTTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCTTA
1 CACCAAGCCTTG-TCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTA
* *
36917455 AGCAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTTA
65 AGCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA
36917520 AGC
130 AGC
* * *
36917523 CACCAAGCCTTGTCTCCCTGAGCAGTAGCAGAGTAGGTTGAAGATTGTAAATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* * *
36917588 GCAGTAGTGGAGAAGATCGAAGACGGCAAATCTTATCATTCTAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
36917653 GC
131 GC
*
36917655 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGAAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* *
36917720 GCAGTAGTGGAGAAGATCGAAGATGG-AAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
36917784 GC
131 GC
* * * *
36917786 CACTAAGCCTTGTCTCCCTAAGCAGCAGCGGAGTAGGTTAAAGATTGTCGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* *
36917851 GCAATAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
36917916 GC
131 GC
* * * * *
36917918 CACCAAGCCTTGTCTTCCTGAGTAGCAGCAGAGTAGGTTGAAGATTATAAATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* * * *
36917983 GCAGTAGTGGAGCAGATCGAGGACGGTAAATCTTATCTTTCCAAGATAGAGGGAAGCAGTTTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
36918048 GC
131 GC
*
36918050 CAGCAAG
1 CACCAAG
36918057 TCTTATCCTC
Statistics
Matches: 616, Mismatches: 49, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
131 120 0.19
132 371 0.60
133 125 0.20
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (132 bp):
CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
GC
Found at i:36918163 original size:44 final size:43
Alignment explanation
Indices: 36918057--36918220 Score: 152
Period size: 44 Copynumber: 3.7 Consensus size: 43
36918047 AGCCAGCAAG
* * * **
36918057 TCTTATCCTCCTGAAGTTGAAGTGGGGCAGATTGAAGATGACAAA
1 TCTTAT-CTCCTGAAGTTGCAGTGGAGCAGATT-AAAACCACAAA
* * *
36918102 TCTTATCTCTTGGAAGTTGCAGTGGAGTAGATTAAAGCCA-ATAA
1 TCTTATCTCCT-GAAGTTGCAGTGGAGCAGATTAAAACCACA-AA
* *
36918146 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAACCACACA
1 TCTTATCT-CCTGAAGTTGCAGTGGAGCAGATTAAAACCACAAA
* *
36918190 TCTTATCTTTCTGAAGTTGCAG-AGAGCAGAT
1 TCTTATC-TCCTGAAGTTGCAGTGGAGCAGAT
36918221 CATATCAGGT
Statistics
Matches: 98, Mismatches: 16, Indels: 12
0.78 0.13 0.10
Matches are distributed among these distances:
43 9 0.09
44 61 0.62
45 28 0.29
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (43 bp):
TCTTATCTCCTGAAGTTGCAGTGGAGCAGATTAAAACCACAAA
Found at i:36918598 original size:19 final size:19
Alignment explanation
Indices: 36918570--36918633 Score: 101
Period size: 19 Copynumber: 3.3 Consensus size: 19
36918560 AATTTTCGAG
*
36918570 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
36918589 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
36918608 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
36918629 GATAT
1 GATAT
36918634 ATACAATCTT
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
19 23 0.55
21 19 0.45
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:36918652 original size:19 final size:21
Alignment explanation
Indices: 36918571--36918646 Score: 120
Period size: 21 Copynumber: 3.7 Consensus size: 21
36918561 ATTTTCGAGG
36918571 ATATACAATCTTAGATATG--
1 ATATACAATCTTAGATATGAT
*
36918590 ATATGCAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
*
36918611 ATATGCAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
36918632 ATATACAATCTTAGA
1 ATATACAATCTTAGA
36918647 AGATATGATT
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
19 18 0.34
21 35 0.66
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.37
Consensus pattern (21 bp):
ATATACAATCTTAGATATGAT
Found at i:36919283 original size:22 final size:22
Alignment explanation
Indices: 36919258--36919301 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
36919248 TAAATGGGTA
*
36919258 ATTTGTGCGATTGCCCCTCGGT
1 ATTTGTGCAATTGCCCCTCGGT
*
36919280 ATTTGTGCAATTTCCCCTCGGT
1 ATTTGTGCAATTGCCCCTCGGT
36919302 GTTTTCACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.11, C:0.27, G:0.23, T:0.39
Consensus pattern (22 bp):
ATTTGTGCAATTGCCCCTCGGT
Found at i:36935540 original size:12 final size:13
Alignment explanation
Indices: 36935517--36935545 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
36935507 AAAATAAGGT
36935517 TTAAAATGATGAA
1 TTAAAATGATGAA
36935530 TTAAAAT-ATGAA
1 TTAAAATGATGAA
36935542 TTAA
1 TTAA
36935546 TTTATCTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.34
Consensus pattern (13 bp):
TTAAAATGATGAA
Found at i:36943065 original size:27 final size:27
Alignment explanation
Indices: 36943024--36943381 Score: 441
Period size: 27 Copynumber: 13.2 Consensus size: 27
36943014 GTTATGGGTT
** *
36943024 TAAAATTACCGAAATACCCTTAATGTG
1 TAAAATTACCGAAATACCCTCGATGGG
* *
36943051 TAAAATTACCAAAATACCCTCGATCGG
1 TAAAATTACCGAAATACCCTCGATGGG
***
36943078 TAAAATTATTAAAATACCCTCGATGGG
1 TAAAATTACCGAAATACCCTCGATGGG
*
36943105 TAAAATTACCAAAATACCCTCGATGGG
1 TAAAATTACCGAAATACCCTCGATGGG
*
36943132 TAAAATTACCGAAATACCCTTGATGGG
1 TAAAATTACCGAAATACCCTCGATGGG
*
36943159 TAAAATTACTGAAATACCCTCGATGGG
1 TAAAATTACCGAAATACCCTCGATGGG
* * *
36943186 TAAAATTATCGAAATATCCTCAATGGG
1 TAAAATTACCGAAATACCCTCGATGGG
** *
36943213 TAAAATTACTAAAATACCCTCGATGAG
1 TAAAATTACCGAAATACCCTCGATGGG
*
36943240 TAAAATCACC-AGAATACCCTCGATGGG
1 TAAAATTACCGA-AATACCCTCGATGGG
*
36943267 TAAAATTACCGAAATACCC-CTAATGGG
1 TAAAATTACCGAAATACCCTC-GATGGG
*
36943294 TAAAATTACTGAAATACCCTCGATGGG
1 TAAAATTACCGAAATACCCTCGATGGG
* *
36943321 TAAAATTATCGAAATACCCCCGATGGG
1 TAAAATTACCGAAATACCCTCGATGGG
* * * *
36943348 TAAAGTTATCGAAATACCCTTGATAGGA
1 TAAAATTACCGAAATACCCTCGAT-GGG
36943376 TAAAAT
1 TAAAAT
36943382 GACTATTAGG
Statistics
Matches: 287, Mismatches: 39, Indels: 9
0.86 0.12 0.03
Matches are distributed among these distances:
26 2 0.01
27 276 0.96
28 9 0.03
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.25
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCTCGATGGG
Found at i:36943535 original size:27 final size:26
Alignment explanation
Indices: 36943505--36943581 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 26
36943495 AGTACTGTTT
36943505 CTGGTGGCTCTGCCACACATACTAATA
1 CTGGTGGCTCTGCCACA-ATACTAATA
* * **
36943532 CTGGTGGCTCTGACACAATTATTGTTA
1 CTGGTGGCTCTGCCACAA-TACTAATA
*
36943559 CTGGTGGCTTTGCCACATATACT
1 CTGGTGGCTCTGCCACA-ATACT
36943582 GTACTGGCAG
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
26 1 0.02
27 39 0.95
28 1 0.02
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.32
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATACTAATA
Found at i:36943632 original size:26 final size:26
Alignment explanation
Indices: 36943583--36943633 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
36943573 ACATATACTG
* * **
36943583 TACTGGCAGCTCTGCTGCGTTATTAT
1 TACTGGCAGCTATGCGGCAATATTAT
36943609 TACTGGCAGCTATGCGGCAATATTA
1 TACTGGCAGCTATGCGGCAATATTA
36943634 GTGTCTGGGC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.33
Consensus pattern (26 bp):
TACTGGCAGCTATGCGGCAATATTAT
Found at i:36945473 original size:25 final size:26
Alignment explanation
Indices: 36945441--36945499 Score: 86
Period size: 25 Copynumber: 2.3 Consensus size: 26
36945431 GCAACTTATG
*
36945441 GAAT-ATGCTACAAAGGCATCATACA
1 GAATCATGCCACAAAGGCATCATACA
*
36945466 GAA-CATGCCACAAAGGCATCATATA
1 GAATCATGCCACAAAGGCATCATACA
36945491 GAATCATGC
1 GAATCATGC
36945500 GTTTACTGTC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 25 0.83
26 5 0.17
ACGTcount: A:0.42, C:0.22, G:0.17, T:0.19
Consensus pattern (26 bp):
GAATCATGCCACAAAGGCATCATACA
Found at i:36948470 original size:31 final size:31
Alignment explanation
Indices: 36948432--36948493 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
36948422 GTGGATGGGA
*
36948432 AGAGAAATTTTTTTTCTCATCTTTCCAAACC
1 AGAGAAATTGTTTTTCTCATCTTTCCAAACC
36948463 AGAGAAATTGTTTTTCTCATCTTTCCAAACC
1 AGAGAAATTGTTTTTCTCATCTTTCCAAACC
36948494 TTTGAAACAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (31 bp):
AGAGAAATTGTTTTTCTCATCTTTCCAAACC
Found at i:36958592 original size:30 final size:30
Alignment explanation
Indices: 36958526--36958593 Score: 82
Period size: 30 Copynumber: 2.3 Consensus size: 30
36958516 GAGACACAGG
* ** **
36958526 CATGTGACTCAGCTGTGTATGACACACGGG
1 CATGCGACTCAGCCATGTATGACACACGAC
*
36958556 CGTGCGACTCAGCCATGTATGACACACGAC
1 CATGCGACTCAGCCATGTATGACACACGAC
36958586 CATGCGAC
1 CATGCGAC
36958594 ACTGTCGAGC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.19
Consensus pattern (30 bp):
CATGCGACTCAGCCATGTATGACACACGAC
Found at i:36961636 original size:15 final size:16
Alignment explanation
Indices: 36961616--36961647 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
36961606 AGGCTTTAGG
36961616 TTTATTTTTAT-TTCT
1 TTTATTTTTATGTTCT
36961631 TTTATTTTTATGTTCT
1 TTTATTTTTATGTTCT
36961647 T
1 T
36961648 CAGAGAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.12, C:0.06, G:0.03, T:0.78
Consensus pattern (16 bp):
TTTATTTTTATGTTCT
Found at i:36964862 original size:39 final size:40
Alignment explanation
Indices: 36964785--36964931 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
36964775 TAGCTCCTCG
* * *
36964785 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
36964825 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
36964864 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
36964904 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
36964932 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:36964942 original size:80 final size:80
Alignment explanation
Indices: 36964831--36965011 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
36964821 CTCATTCAAT
* * *
36964831 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
36964894 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
36964910 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
36964974 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
36964991 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
36965012 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:36964971 original size:40 final size:40
Alignment explanation
Indices: 36964828--36965011 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
36964818 TAACTCATTC
* *
36964828 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
36964868 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
36964908 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
36964948 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
36964989 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
36965012 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:36970078 original size:16 final size:15
Alignment explanation
Indices: 36970052--36970081 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
36970042 CTTCAAACCA
36970052 TCATCCCAATCAAAG
1 TCATCCCAATCAAAG
36970067 TCATCACCAATCAAA
1 TCATC-CCAATCAAA
36970082 AATTGATACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.33, G:0.03, T:0.20
Consensus pattern (15 bp):
TCATCCCAATCAAAG
Found at i:36970578 original size:18 final size:18
Alignment explanation
Indices: 36970515--36970578 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 18
36970505 TTTTATTTGA
**
36970515 TTTCTTTTTCTCTCACTT
1 TTTCTTTTTCTCTTTCTT
36970533 TTT-TTATTTCTCTTTCTT
1 TTTCTT-TTTCTCTTTCTT
* ** *
36970551 TTGCAATTTCTTTTTCTT
1 TTTCTTTTTCTCTTTCTT
36970569 TTTCTTTTTC
1 TTTCTTTTTC
36970579 ACATGCTGTT
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
17 2 0.06
18 33 0.94
ACGTcount: A:0.06, C:0.20, G:0.02, T:0.72
Consensus pattern (18 bp):
TTTCTTTTTCTCTTTCTT
Found at i:36973189 original size:41 final size:41
Alignment explanation
Indices: 36973098--36973242 Score: 166
Period size: 41 Copynumber: 3.6 Consensus size: 41
36973088 AGGCTAAGCG
* **** *
36973098 CCTAGCAGGCTAAATGCCGGTGA-ATTTTTCAGACTATAAA
1 CCTAGCAGGCTAAGTGCCGGTGATAGGAATCAGGCTATAAA
* * * *
36973138 TCTAGCAGGCTAAGTGCCGGTGATCGGAATTAGGTTATAAA
1 CCTAGCAGGCTAAGTGCCGGTGATAGGAATCAGGCTATAAA
* * *
36973179 CCTAGCAGGCTACGTGCCGGTGATATGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATAGGAATCAGGCTATAAA
36973220 CCTAGCAGGCTAAGTGCCGGTGA
1 CCTAGCAGGCTAAGTGCCGGTGA
36973243 ATATGTTAAA
Statistics
Matches: 86, Mismatches: 18, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
40 21 0.24
41 65 0.76
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (41 bp):
CCTAGCAGGCTAAGTGCCGGTGATAGGAATCAGGCTATAAA
Found at i:36980942 original size:41 final size:41
Alignment explanation
Indices: 36980884--36980995 Score: 170
Period size: 41 Copynumber: 2.7 Consensus size: 41
36980874 ATTTTTTAGA
* *
36980884 CTATAAATCTAGCAGGCTAAGTGCCGGTGATCGGAATCAGG
1 CTATAAACCTAGCAGGCTAAGTGCCGGTGATAGGAATCAGG
* * *
36980925 TTATAAACCTAGCAGGCTACGTGCCGGTGATATGAATCAGG
1 CTATAAACCTAGCAGGCTAAGTGCCGGTGATAGGAATCAGG
*
36980966 CTATAAGCCTAGCAGGCTAAGTGCCGGTGA
1 CTATAAACCTAGCAGGCTAAGTGCCGGTGA
36980996 ATATGTTAAA
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 63 1.00
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.22
Consensus pattern (41 bp):
CTATAAACCTAGCAGGCTAAGTGCCGGTGATAGGAATCAGG
Found at i:36984238 original size:13 final size:13
Alignment explanation
Indices: 36984220--36984249 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
36984210 ATAAACTCTA
*
36984220 TTTTCAAGTTATG
1 TTTTCAAGATATG
36984233 TTTTCAAGATATG
1 TTTTCAAGATATG
36984246 TTTT
1 TTTT
36984250 ATACATTCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.23, C:0.07, G:0.13, T:0.57
Consensus pattern (13 bp):
TTTTCAAGATATG
Found at i:36986545 original size:42 final size:43
Alignment explanation
Indices: 36986486--36986590 Score: 158
Period size: 43 Copynumber: 2.5 Consensus size: 43
36986476 ACCCCTTGGG
* * *
36986486 GGAATCAGCACTTAGCAACCCCC-TTCACATTTCAGATGCGGT
1 GGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGT
*
36986528 GGAATCAACACTTAGCAACCCCCTTTCACATTTAAAATACGGT
1 GGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGT
*
36986571 GGGATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
36986591 ACCAATGAAT
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
42 22 0.39
43 34 0.61
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (43 bp):
GGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGT
Found at i:36986616 original size:33 final size:34
Alignment explanation
Indices: 36986574--36986726 Score: 108
Period size: 33 Copynumber: 4.5 Consensus size: 34
36986564 ATACGGTGGG
36986574 ATCAGCACTTAGCAACCACCAAT-GAATAGGGGA
1 ATCAGCACTTAGCAACCACCAATAGAATAGGGGA
*
36986607 ATCAGCACTTAGCAACC-CC--TCG----GGGGA
1 ATCAGCACTTAGCAACCACCAATAGAATAGGGGA
* * *
36986634 ATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGG
1 ATCAGCACTTAGCAA-CCAC---CA-A--TAGAATA-GG-GGA
* *
36986677 ATCAGCACTTAACAACCACCGAT-GAATAGGGGA
1 ATCAGCACTTAGCAACCACCAATAGAATAGGGGA
36986710 ATCAGCACTTAGCAACC
1 ATCAGCACTTAGCAACC
36986727 CCTCTATATT
Statistics
Matches: 94, Mismatches: 9, Indels: 34
0.69 0.07 0.25
Matches are distributed among these distances:
27 20 0.21
28 2 0.02
29 1 0.01
30 1 0.01
31 1 0.01
32 3 0.03
33 35 0.37
34 2 0.02
35 4 0.04
36 1 0.01
37 1 0.01
38 1 0.01
39 1 0.01
42 5 0.05
43 16 0.17
ACGTcount: A:0.34, C:0.28, G:0.20, T:0.18
Consensus pattern (34 bp):
ATCAGCACTTAGCAACCACCAATAGAATAGGGGA
Found at i:36986707 original size:103 final size:103
Alignment explanation
Indices: 36986528--36986730 Score: 379
Period size: 103 Copynumber: 2.0 Consensus size: 103
36986518 CAGATGCGGT
*
36986528 GGAATCAACACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGGATCAGCACTTAGCAACCAC
1 GGAATCAACACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGGATCAGCACTTAACAACCAC
36986593 CAATGAATAGGGGAATCAGCACTTAGCAACCCCTCGGG
66 CAATGAATAGGGGAATCAGCACTTAGCAACCCCTCGGG
*
36986631 GGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGGATCAGCACTTAACAACCAC
1 GGAATCAACACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGGATCAGCACTTAACAACCAC
*
36986696 CGATGAATAGGGGAATCAGCACTTAGCAACCCCTC
66 CAATGAATAGGGGAATCAGCACTTAGCAACCCCTC
36986731 TATATTCAAT
Statistics
Matches: 97, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 97 1.00
ACGTcount: A:0.33, C:0.29, G:0.19, T:0.20
Consensus pattern (103 bp):
GGAATCAACACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGGATCAGCACTTAACAACCAC
CAATGAATAGGGGAATCAGCACTTAGCAACCCCTCGGG
Done.