Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 124 of 207
Found at i:37685439 original size:81 final size:81
Alignment explanation
Indices: 37685329--37685505 Score: 255
Period size: 81 Copynumber: 2.2 Consensus size: 81
37685319 TACGCCACTA
** * *
37685329 AAAGGCTTTTATTTCATATTACGCTACAAAGGCTTTTCTTTCATATTATGCCACAAAGTCTTTCC
1 AAAGGCTTTCCTTTCATATTACGCCACAAAGGCTTTTCTTTCATATTATGCCACAAAGTATTTCC
* *
37685394 TTTTATATTATGCTAC
66 TTTCATATTATGCCAC
* * *
37685410 AAAGTCTTTCCTTTCATATTACGCCACAAAGGCTTTTCTTTCATATTATGCCACAAATTATTTTC
1 AAAGGCTTTCCTTTCATATTACGCCACAAAGGCTTTTCTTTCATATTATGCCACAAAGTATTTCC
*
37685475 TTTCATATTATGCCAT
66 TTTCATATTATGCCAC
*
37685491 AAAGGCTTTTCTTTC
1 AAAGGCTTTCCTTTC
37685506 CTAACATGTT
Statistics
Matches: 84, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 84 1.00
ACGTcount: A:0.27, C:0.21, G:0.09, T:0.44
Consensus pattern (81 bp):
AAAGGCTTTCCTTTCATATTACGCCACAAAGGCTTTTCTTTCATATTATGCCACAAAGTATTTCC
TTTCATATTATGCCAC
Found at i:37687211 original size:18 final size:19
Alignment explanation
Indices: 37687188--37687236 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
37687178 GTTGTAAAGT
*
37687188 TTTATTTTTATTTATTTA-
1 TTTATTTTTATTTACTTAG
37687206 TTTATTTATT-TTTACTTAG
1 TTTATTT-TTATTTACTTAG
37687225 TTTAATTTTTAT
1 TTT-ATTTTTAT
37687237 GTAAATATTC
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 14 0.54
19 7 0.27
20 5 0.19
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (19 bp):
TTTATTTTTATTTACTTAG
Found at i:37687216 original size:22 final size:22
Alignment explanation
Indices: 37687187--37687236 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
37687177 AGTTGTAAAG
* *
37687187 TTTTATTTTTATTTA-TTTATT
1 TTTTATTTTTACTTAGTTTAAT
37687208 TATTTATTTTTACTTAGTTTAAT
1 T-TTTATTTTTACTTAGTTTAAT
37687231 TTTTAT
1 TTTTAT
37687237 GTAAATATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 1 0.04
22 18 0.72
23 6 0.24
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.74
Consensus pattern (22 bp):
TTTTATTTTTACTTAGTTTAAT
Found at i:37693783 original size:18 final size:19
Alignment explanation
Indices: 37693760--37693808 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
37693750 GTTCTAAAGT
*
37693760 TTTATTTTTATTTATTTA-
1 TTTATTTTTATTTACTTAG
37693778 TTTATTTATT-TTTACTTAG
1 TTTATTT-TTATTTACTTAG
37693797 TTTAATTTTTAT
1 TTT-ATTTTTAT
37693809 GTAAATATTC
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 14 0.54
19 7 0.27
20 5 0.19
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (19 bp):
TTTATTTTTATTTACTTAG
Found at i:37693788 original size:22 final size:22
Alignment explanation
Indices: 37693759--37693808 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
37693749 AGTTCTAAAG
* *
37693759 TTTTATTTTTATTTA-TTTATT
1 TTTTATTTTTACTTAGTTTAAT
37693780 TATTTATTTTTACTTAGTTTAAT
1 T-TTTATTTTTACTTAGTTTAAT
37693803 TTTTAT
1 TTTTAT
37693809 GTAAATATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 1 0.04
22 18 0.72
23 6 0.24
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.74
Consensus pattern (22 bp):
TTTTATTTTTACTTAGTTTAAT
Found at i:37695760 original size:50 final size:52
Alignment explanation
Indices: 37695702--37695820 Score: 170
Period size: 50 Copynumber: 2.3 Consensus size: 52
37695692 TTAATAAAGT
* * **
37695702 CATGCATTATGTAACTCTCATGTTAG-TTAAGTTTGCATCA-TAAATTATGA
1 CATGCATTATGTAACTCCCATGTTAGCTAAAGTTTGCATCATTAAATTAACA
*
37695752 CATGCATTATGTAACTCCCATGTTAGCTAAAGTTTGCATCATTAAATTAACT
1 CATGCATTATGTAACTCCCATGTTAGCTAAAGTTTGCATCATTAAATTAACA
*
37695804 CATGCATTAAGTAACTC
1 CATGCATTATGTAACTC
37695821 ATTTGTTCAT
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
50 25 0.41
51 13 0.21
52 23 0.38
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.37
Consensus pattern (52 bp):
CATGCATTATGTAACTCCCATGTTAGCTAAAGTTTGCATCATTAAATTAACA
Found at i:37699523 original size:52 final size:51
Alignment explanation
Indices: 37699394--37699524 Score: 174
Period size: 50 Copynumber: 2.6 Consensus size: 51
37699384 ATGTGTTATG
* * * **
37699394 CATTTAATAAAGTCAAGCATTATGTAACTTTCATGTTAGTTAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCCCATGTTAGTTAAGTTTGCAT
* *
37699445 CA-TAAATTATGACATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCCCATGTTAGTT-AAGTTTGCAT
*
37699496 CATTAAATTAAGTCATGCATTAAGTAACT
1 CATTAAATTAAGTCATGCATTATGTAACT
37699525 TATTTGTTCA
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
50 31 0.46
51 14 0.21
52 23 0.34
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (51 bp):
CATTAAATTAAGTCATGCATTATGTAACTCCCATGTTAGTTAAGTTTGCAT
Found at i:37703552 original size:26 final size:26
Alignment explanation
Indices: 37703515--37703564 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
37703505 CGTTCTGCAC
37703515 CAAAAAAAAAACAAAACAGAAAAACA
1 CAAAAAAAAAACAAAACAGAAAAACA
* *
37703541 CAAAAAACAAACAAAATAGAAAAA
1 CAAAAAAAAAACAAAACAGAAAAA
37703565 TATATAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.80, C:0.14, G:0.04, T:0.02
Consensus pattern (26 bp):
CAAAAAAAAAACAAAACAGAAAAACA
Found at i:37715704 original size:32 final size:32
Alignment explanation
Indices: 37715663--37715766 Score: 136
Period size: 32 Copynumber: 3.0 Consensus size: 32
37715653 CGCATTCCTC
37715663 TATCATTTGGTATCAGATTTTGGGCGTTTTGG
1 TATCATTTGGTATCAGATTTTGGGCGTTTTGG
37715695 TATCATTTGGTATCAGATTTTGGGCGTTTTAGAAACCCCG
1 TATCATTTGGTATCAGATTTTGGGCGTTTT-G-------G
37715735 TATCATTTGGTATCAGATTTTGGGCGTTTTGG
1 TATCATTTGGTATCAGATTTTGGGCGTTTTGG
37715767 GTGTTCTTGG
Statistics
Matches: 64, Mismatches: 0, Indels: 16
0.80 0.00 0.20
Matches are distributed among these distances:
32 31 0.48
33 1 0.02
39 1 0.02
40 31 0.48
ACGTcount: A:0.18, C:0.12, G:0.26, T:0.43
Consensus pattern (32 bp):
TATCATTTGGTATCAGATTTTGGGCGTTTTGG
Found at i:37721858 original size:48 final size:48
Alignment explanation
Indices: 37721790--37721882 Score: 132
Period size: 48 Copynumber: 1.9 Consensus size: 48
37721780 CATTTCTTTC
* * * * *
37721790 TTTAATCTCACTCTCTTTTTCAGTTTTCTTTTCTTTTTCACACTCCTT
1 TTTAATCTCAATCTCATTTTCAATTTTCTTTTCTATCTCACACTCCTT
*
37721838 TTTATTCTCAATCTCATTTTCAATTTTCTTTTCTATCTCACACTC
1 TTTAATCTCAATCTCATTTTCAATTTTCTTTTCTATCTCACACTC
37721883 ATCTTCTTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 39 1.00
ACGTcount: A:0.16, C:0.27, G:0.01, T:0.56
Consensus pattern (48 bp):
TTTAATCTCAATCTCATTTTCAATTTTCTTTTCTATCTCACACTCCTT
Found at i:37721869 original size:30 final size:28
Alignment explanation
Indices: 37721835--37721899 Score: 69
Period size: 30 Copynumber: 2.2 Consensus size: 28
37721825 TTTCACACTC
*
37721835 CTTTTTATTCTCA-ATCTCATTTTCAATTTT
1 CTTTTTA-TCTCACA-CTCATCTTC-ATTTT
*
37721865 CTTTTCTATCTCACACTCATCTTCTTTTT
1 CTTTT-TATCTCACACTCATCTTCATTTT
37721894 CTTTTT
1 CTTTTT
37721900 CACATGCTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
28 1 0.03
29 9 0.29
30 18 0.58
31 3 0.10
ACGTcount: A:0.15, C:0.25, G:0.00, T:0.60
Consensus pattern (28 bp):
CTTTTTATCTCACACTCATCTTCATTTT
Found at i:37722891 original size:12 final size:12
Alignment explanation
Indices: 37722874--37722912 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
37722864 AATAATAATT
37722874 AATTTTTTTTTC
1 AATTTTTTTTTC
37722886 AATTTTTTTTTC
1 AATTTTTTTTTC
*
37722898 AATTTTTTTTAC
1 AATTTTTTTTTC
37722910 AAT
1 AAT
37722913 CTCGTAATAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (12 bp):
AATTTTTTTTTC
Found at i:37727833 original size:11 final size:11
Alignment explanation
Indices: 37727813--37727845 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
37727803 GTGGAGCTTC
37727813 ATTT-AGCTCA
1 ATTTCAGCTCA
*
37727823 TTTTCAGCTCA
1 ATTTCAGCTCA
37727834 ATTTCAGCTCA
1 ATTTCAGCTCA
37727845 A
1 A
37727846 GTCACTTATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
10 3 0.15
11 17 0.85
ACGTcount: A:0.27, C:0.24, G:0.09, T:0.39
Consensus pattern (11 bp):
ATTTCAGCTCA
Found at i:37728712 original size:34 final size:34
Alignment explanation
Indices: 37728669--37728738 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
37728659 TAGGAGATTA
37728669 TTATAAATAGCTGAATTTTTACTTTGTAGAGGAC
1 TTATAAATAGCTGAATTTTTACTTTGTAGAGGAC
37728703 TTATAAATAGCTGAATTTTTACTTTGTAGAGGAC
1 TTATAAATAGCTGAATTTTTACTTTGTAGAGGAC
37728737 TT
1 TT
37728739 TTGGAAACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.43
Consensus pattern (34 bp):
TTATAAATAGCTGAATTTTTACTTTGTAGAGGAC
Found at i:37739854 original size:19 final size:18
Alignment explanation
Indices: 37739819--37739854 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
37739809 GAAAAGTAAA
*
37739819 TTGAAAGCAAAAGAAAGC
1 TTGAAAGAAAAAGAAAGC
37739837 TTGAAAGAAAAGAGAAAG
1 TTGAAAGAAAA-AGAAAG
37739855 AAAAAGAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.58, C:0.06, G:0.25, T:0.11
Consensus pattern (18 bp):
TTGAAAGAAAAAGAAAGC
Found at i:37744015 original size:37 final size:39
Alignment explanation
Indices: 37743974--37744059 Score: 88
Period size: 37 Copynumber: 2.2 Consensus size: 39
37743964 AAAGGAAGAG
***
37743974 AGAAAAAGAAATTTAGTGAAAAAG-AAAAGAAA-AAAAA
1 AGAAAAAGAAAGCAAGTGAAAAAGAAAAAGAAAGAAAAA
* *
37744011 AGAAAGAA-AAAGCAATTGAAAAAGAAAAAGAAAGTGAAAA
1 AGAAA-AAGAAAGCAAGTGAAAAAGAAAAAGAAAG-AAAAA
37744051 AGAAAAAGA
1 AGAAAAAGA
37744060 TAGTAAGATA
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
37 17 0.44
38 10 0.26
39 2 0.05
40 10 0.26
ACGTcount: A:0.72, C:0.01, G:0.19, T:0.08
Consensus pattern (39 bp):
AGAAAAAGAAAGCAAGTGAAAAAGAAAAAGAAAGAAAAA
Found at i:37744016 original size:14 final size:15
Alignment explanation
Indices: 37743992--37744021 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
37743982 AAATTTAGTG
37743992 AAAAAGAAAAGAAAA
1 AAAAAGAAAAGAAAA
37744007 AAAAAG-AAAGAAAA
1 AAAAAGAAAAGAAAA
37744021 A
1 A
37744022 GCAATTGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAAGAAAA
Found at i:37744036 original size:18 final size:18
Alignment explanation
Indices: 37744013--37744059 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
37744003 AAAAAAAAAG
* *
37744013 AAAGAAAAAGCAATTGAA
1 AAAGAAAAAGAAAGTGAA
37744031 AAAGAAAAAGAAAGTGAA
1 AAAGAAAAAGAAAGTGAA
37744049 AAAGAAAAAGA
1 AAAGAAAAAGA
37744060 TAGTAAGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.72, C:0.02, G:0.19, T:0.06
Consensus pattern (18 bp):
AAAGAAAAAGAAAGTGAA
Found at i:37744056 original size:5 final size:6
Alignment explanation
Indices: 37743991--37744059 Score: 59
Period size: 6 Copynumber: 11.3 Consensus size: 6
37743981 GAAATTTAGT
* * **
37743991 GAAAAA G-AAAA GAAAAAA AAAGAAA GAAAAA GCAATT GAAAAA GAAAAA
1 GAAAAA GAAAAA G-AAAAA GAA-AAA GAAAAA GAAAAA GAAAAA GAAAAA
**
37744040 GAAAGT GAAAAA GAAAAA GA
1 GAAAAA GAAAAA GAAAAA GA
37744060 TAGTAAGATA
Statistics
Matches: 48, Mismatches: 12, Indels: 6
0.73 0.18 0.09
Matches are distributed among these distances:
5 5 0.10
6 34 0.71
7 9 0.19
ACGTcount: A:0.75, C:0.01, G:0.19, T:0.04
Consensus pattern (6 bp):
GAAAAA
Found at i:37745281 original size:20 final size:20
Alignment explanation
Indices: 37745249--37745286 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
37745239 GTGATTCTGA
37745249 TTTGATGCCATCAATGAAATT
1 TTTGATGCCATC-ATGAAATT
37745270 TTTGAT-CCATCATGAAA
1 TTTGATGCCATCATGAAA
37745287 AGGTAATGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.35
20 5 0.29
21 6 0.35
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37
Consensus pattern (20 bp):
TTTGATGCCATCATGAAATT
Found at i:37745497 original size:20 final size:21
Alignment explanation
Indices: 37745464--37745503 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
37745454 CCAAGTGCAA
* *
37745464 AATGAAGCTTAATTTTAGCTC
1 AATGAAGCTCAATTCTAGCTC
37745485 AATG-AGCTCAATTCTAGCT
1 AATGAAGCTCAATTCTAGCT
37745504 TCTTCAAGCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (21 bp):
AATGAAGCTCAATTCTAGCTC
Found at i:37745605 original size:19 final size:19
Alignment explanation
Indices: 37745581--37745673 Score: 72
Period size: 19 Copynumber: 5.1 Consensus size: 19
37745571 AATAAATTAC
*
37745581 TCATCTTAGTTAATTGAGT
1 TCATCTTAGTTAATTAAGT
37745600 TCATCTTAGTTAATTAAGT
1 TCATCTTAGTTAATTAAGT
* * *
37745619 T--GC-T-G-GAA-TAAAT
1 TCATCTTAGTTAATTAAGT
37745632 TACAAATCTTAGTTAATTAAGT
1 T-C--ATCTTAGTTAATTAAGT
*
37745654 TCATCTTAGTTAATTTAGT
1 TCATCTTAGTTAATTAAGT
37745673 T
1 T
37745674 GCTGGAATAA
Statistics
Matches: 57, Mismatches: 8, Indels: 18
0.69 0.10 0.22
Matches are distributed among these distances:
13 5 0.09
14 2 0.04
15 1 0.02
16 1 0.02
17 1 0.02
18 1 0.02
19 37 0.65
20 1 0.02
21 3 0.05
22 5 0.09
ACGTcount: A:0.32, C:0.10, G:0.13, T:0.45
Consensus pattern (19 bp):
TCATCTTAGTTAATTAAGT
Found at i:37745641 original size:54 final size:54
Alignment explanation
Indices: 37745559--37745683 Score: 205
Period size: 54 Copynumber: 2.3 Consensus size: 54
37745549 CAACACATTT
* ** *
37745559 TTAATTTGCTGGAATAAATTACTCATCTTAGTTAATTGAGTTCATCTTAGTTAA
1 TTAAGTTGCTGGAATAAATTACAAATCTTAGTTAATTAAGTTCATCTTAGTTAA
37745613 TTAAGTTGCTGGAATAAATTACAAATCTTAGTTAATTAAGTTCATCTTAGTTAA
1 TTAAGTTGCTGGAATAAATTACAAATCTTAGTTAATTAAGTTCATCTTAGTTAA
*
37745667 TTTAGTTGCTGGAATAA
1 TTAAGTTGCTGGAATAA
37745684 TTTATTGTTG
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 66 1.00
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (54 bp):
TTAAGTTGCTGGAATAAATTACAAATCTTAGTTAATTAAGTTCATCTTAGTTAA
Found at i:37748647 original size:32 final size:32
Alignment explanation
Indices: 37748596--37748795 Score: 195
Period size: 32 Copynumber: 6.3 Consensus size: 32
37748586 GAATGGCTAC
* * *
37748596 AAGCCATAAGT-ACAGTAATATGATTGGCACA
1 AAGCCATCAGTAATAGTAATATGATCGGCACA
* * *
37748627 AAGCCATTAGTAGTAGTAATATGATCGGTACA
1 AAGCCATCAGTAATAGTAATATGATCGGCACA
* * * ** *
37748659 CAGCCATTAGTAATAGTAGTATGGCCGACACA
1 AAGCCATCAGTAATAGTAATATGATCGGCACA
* *
37748691 AAGCCATCAGTAGTAGTAATATGATCGGTACA
1 AAGCCATCAGTAATAGTAATATGATCGGCACA
* * *
37748723 CAGCCATCAGTAATGGTAATATGATCGACACA
1 AAGCCATCAGTAATAGTAATATGATCGGCACA
* * * * *
37748755 TAGCCATCACTAATGGTAATTTGAACGGCACA
1 AAGCCATCAGTAATAGTAATATGATCGGCACA
37748787 AAGCCATCA
1 AAGCCATCA
37748796 ATAGCATCGC
Statistics
Matches: 137, Mismatches: 31, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
31 10 0.07
32 127 0.93
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.23
Consensus pattern (32 bp):
AAGCCATCAGTAATAGTAATATGATCGGCACA
Found at i:37748703 original size:64 final size:64
Alignment explanation
Indices: 37748593--37748795 Score: 221
Period size: 64 Copynumber: 3.2 Consensus size: 64
37748583 ACAGAATGGC
* * ** * *
37748593 TACA-AGCCATAAGT-ACAGTAATATGATTGGCACAAAGCCATTAGTAGTAGTAATATGATCGG
1 TACACAGCCATCAGTAATAGTAATATGACCGACACAAAGCCATCAGTAGTAGTAATATGATCGG
* * *
37748655 TACACAGCCATTAGTAATAGTAGTATGGCCGACACAAAGCCATCAGTAGTAGTAATATGATCGG
1 TACACAGCCATCAGTAATAGTAATATGACCGACACAAAGCCATCAGTAGTAGTAATATGATCGG
* * * * * * * *
37748719 TACACAGCCATCAGTAATGGTAATATGATCGACACATAGCCATCACTAATGGTAATTTGAACGG
1 TACACAGCCATCAGTAATAGTAATATGACCGACACAAAGCCATCAGTAGTAGTAATATGATCGG
* *
37748783 CACAAAGCCATCA
1 TACACAGCCATCA
37748796 ATAGCATCGC
Statistics
Matches: 118, Mismatches: 21, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
62 4 0.03
63 9 0.08
64 105 0.89
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (64 bp):
TACACAGCCATCAGTAATAGTAATATGACCGACACAAAGCCATCAGTAGTAGTAATATGATCGG
Found at i:37748787 original size:96 final size:95
Alignment explanation
Indices: 37748596--37748795 Score: 220
Period size: 96 Copynumber: 2.1 Consensus size: 95
37748586 GAATGGCTAC
* * * * **
37748596 AAGCCATAAGTACAGTAATATGATTGGCACAAAGCCATTAGTAGTAGTAATATGATCGGTACACA
1 AAGCCATCAGTACAGTAATATGATCGGCACAAAGCCATCAGTAATAGTAATATGATCGACACACA
* * * **
37748661 GCCATTAGTAATAGTAGTATGGCCGACACA
66 GCCATCACTAATAGTAATATGAACGACACA
* * * * *
37748691 AAGCCATCAGTAGTAGTAATATGATCGGTACACAGCCATCAGTAATGGTAATATGATCGACACAT
1 AAGCCATCAGTA-CAGTAATATGATCGGCACAAAGCCATCAGTAATAGTAATATGATCGACACAC
* * *
37748756 AGCCATCACTAATGGTAATTTGAACGGCACA
65 AGCCATCACTAATAGTAATATGAACGACACA
37748787 AAGCCATCA
1 AAGCCATCA
37748796 ATAGCATCGC
Statistics
Matches: 85, Mismatches: 19, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
95 11 0.13
96 74 0.87
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.23
Consensus pattern (95 bp):
AAGCCATCAGTACAGTAATATGATCGGCACAAAGCCATCAGTAATAGTAATATGATCGACACACA
GCCATCACTAATAGTAATATGAACGACACA
Found at i:37748830 original size:26 final size:26
Alignment explanation
Indices: 37748801--37748854 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
37748791 CATCAATAGC
*
37748801 ATCGCAACAAAGTTGCCAGCAACAGT
1 ATCGCAACAAAGCTGCCAGCAACAGT
* * *
37748827 ATCGCAGCAAAGCTGCCAGTAATAGT
1 ATCGCAACAAAGCTGCCAGCAACAGT
37748853 AT
1 AT
37748855 ATTTGGCCAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.19
Consensus pattern (26 bp):
ATCGCAACAAAGCTGCCAGCAACAGT
Found at i:37751613 original size:27 final size:26
Alignment explanation
Indices: 37751583--37751635 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
37751573 ATTCTCAAAC
*
37751583 TCTTT-TTTCTTTCTCTTTCCCTATTTT
1 TCTTTATTTCTTT-T-TTTCCCAATTTT
37751610 TCTTTCATTTCTTTTTTTCCCAATTT
1 TCTTT-ATTTCTTTTTTTCCCAATTT
37751636 CATTTGAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
27 15 0.65
28 1 0.04
29 7 0.30
ACGTcount: A:0.08, C:0.25, G:0.00, T:0.68
Consensus pattern (26 bp):
TCTTTATTTCTTTTTTTCCCAATTTT
Found at i:37755695 original size:96 final size:96
Alignment explanation
Indices: 37755526--37755701 Score: 307
Period size: 96 Copynumber: 1.8 Consensus size: 96
37755516 CTAATGACTA
* * **
37755526 TGAGTTATCACCTTTTGTGCAATGTTATTGGTGTAGTTCAAAAGATCATAAGAGTTTCCAATGTC
1 TGAGCTATCACCTTTTGTGCAATGTTACTAATGTAGTTCAAAAGATCATAAGAGTTTCCAATGTC
37755591 CAATTAAATATCCAAAAAGAGAGAATACGAT
66 CAATTAAATATCCAAAAAGAGAGAATACGAT
*
37755622 TGAGCTATCACCTTTTGTGCAATGTTACTAATGTAGTTCAAAAGATCATAAGTGTTTCCAATGTC
1 TGAGCTATCACCTTTTGTGCAATGTTACTAATGTAGTTCAAAAGATCATAAGAGTTTCCAATGTC
37755687 CAATTAAATATCCAA
66 CAATTAAATATCCAA
37755702 CGAGAAAAGA
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
96 75 1.00
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (96 bp):
TGAGCTATCACCTTTTGTGCAATGTTACTAATGTAGTTCAAAAGATCATAAGAGTTTCCAATGTC
CAATTAAATATCCAAAAAGAGAGAATACGAT
Found at i:37765724 original size:20 final size:20
Alignment explanation
Indices: 37765678--37765724 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
37765668 AGCTCGTTTC
*
37765678 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
37765698 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
37765718 CAGCTCA
1 CAGCTCA
37765725 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:37767221 original size:12 final size:13
Alignment explanation
Indices: 37767204--37767236 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
37767194 TTGGAGTAAC
37767204 AAAAAAATC-AAA
1 AAAAAAATCGAAA
*
37767216 AAAAAATTCGAAA
1 AAAAAAATCGAAA
37767229 AAAAAAAT
1 AAAAAAAT
37767237 TTGATTAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 8 0.44
13 10 0.56
ACGTcount: A:0.79, C:0.06, G:0.03, T:0.12
Consensus pattern (13 bp):
AAAAAAATCGAAA
Found at i:37767288 original size:26 final size:26
Alignment explanation
Indices: 37767258--37767318 Score: 88
Period size: 25 Copynumber: 2.4 Consensus size: 26
37767248 AACAAAAATT
** *
37767258 CAAAAAAAAGTGAAAAAAAA-TTGAG
1 CAAAAAAAAAAGAAAAAAAAGGTGAG
37767283 CAAAAAAAAAAGAAAAAAAAGGTGAG
1 CAAAAAAAAAAGAAAAAAAAGGTGAG
37767309 CAAAAAAAAA
1 CAAAAAAAAA
37767319 TCAAGTTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
25 18 0.56
26 14 0.44
ACGTcount: A:0.74, C:0.05, G:0.15, T:0.07
Consensus pattern (26 bp):
CAAAAAAAAAAGAAAAAAAAGGTGAG
Found at i:37768510 original size:48 final size:47
Alignment explanation
Indices: 37768431--37768536 Score: 135
Period size: 48 Copynumber: 2.2 Consensus size: 47
37768421 GAGTGTCATG
*
37768431 GAAAAAGAAATTGAGATTGAAAAAGGATGTGA-AAAAGAGAAAGAAATC
1 GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAA-AGAAA-AAATC
* *
37768479 GAAAAAGAAATTGAGATTGAACAAAAG-TGTGAGGAAAAAGAGAAAATT
1 GAAAAAGAAATTGAGATTGAA-AAAAGATGTGA-GAAAAAGAAAAAATC
37768527 GAAAAAGAAA
1 GAAAAAGAAA
37768537 GAAAAGACAA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.59, C:0.02, G:0.25, T:0.14
Consensus pattern (47 bp):
GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAAAGAAAAAATC
Found at i:37770247 original size:20 final size:20
Alignment explanation
Indices: 37770201--37770247 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
37770191 AGCTCGTTTC
*
37770201 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
37770221 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
37770241 CAGCTCA
1 CAGCTCA
37770248 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:37777725 original size:20 final size:20
Alignment explanation
Indices: 37777702--37777748 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
37777692 GGGTTAAGAT
*
37777702 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
37777722 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
37777742 TGAGCTG
1 TGAGCTG
37777749 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:37779471 original size:48 final size:48
Alignment explanation
Indices: 37779416--37779521 Score: 128
Period size: 48 Copynumber: 2.2 Consensus size: 48
37779406 TTGTCTTTTC
*
37779416 TTTCTTTTTCAATTT-TCTCT-TTTTCCTCACA-CTTTTGTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTT--TCACATCCTTT-TTCAATCTCAA
** *
37779464 TTTCTTTTTTGATTTCTTTCTCTTTTTCACATCCTTTTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
37779512 TTTCTTTTTC
1 TTTCTTTTTC
37779522 CATGACACTC
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
48 38 0.76
49 8 0.16
50 4 0.08
ACGTcount: A:0.14, C:0.24, G:0.02, T:0.60
Consensus pattern (48 bp):
TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
Found at i:37780767 original size:11 final size:12
Alignment explanation
Indices: 37780751--37780782 Score: 57
Period size: 11 Copynumber: 2.8 Consensus size: 12
37780741 CAACAAAAAT
37780751 TTTTTTTTTGA-
1 TTTTTTTTTGAC
37780762 TTTTTTTTTGAC
1 TTTTTTTTTGAC
37780774 TTTTTTTTT
1 TTTTTTTTT
37780783 ATGTTACGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 11 0.55
12 9 0.45
ACGTcount: A:0.06, C:0.03, G:0.06, T:0.84
Consensus pattern (12 bp):
TTTTTTTTTGAC
Found at i:37782200 original size:20 final size:20
Alignment explanation
Indices: 37782177--37782223 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
37782167 GGGTTAAGAT
*
37782177 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
37782197 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
37782217 TGAGCTG
1 TGAGCTG
37782224 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:37787137 original size:12 final size:12
Alignment explanation
Indices: 37787107--37787139 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
37787097 ATGCAACAAG
37787107 AAACCAGCA-GC
1 AAACCAGCATGC
37787118 AAACCAGCATGC
1 AAACCAGCATGC
*
37787130 AGACCAGCAT
1 AAACCAGCAT
37787140 CCAAGCTGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 9 0.45
12 11 0.55
ACGTcount: A:0.42, C:0.33, G:0.18, T:0.06
Consensus pattern (12 bp):
AAACCAGCATGC
Found at i:37788199 original size:21 final size:21
Alignment explanation
Indices: 37788173--37788225 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
37788163 CATTGTTTCT
*
37788173 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
*
37788194 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
37788215 AATCTCACCGC
1 AATCTCACCGC
37788226 CACCGCTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.30, C:0.38, G:0.09, T:0.23
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:37789934 original size:17 final size:16
Alignment explanation
Indices: 37789907--37789953 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 16
37789897 ACCCACAAAA
*
37789907 ATTTTTTTATTTTTCT
1 ATTTTTCTATTTTTCT
37789923 -TCTTTTCATATTTTTCT
1 AT-TTTTC-TATTTTTCT
37789940 ATTTTTCTATTTTT
1 ATTTTTCTATTTTT
37789954 TTCACTTTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 1 0.04
16 11 0.41
17 14 0.52
18 1 0.04
ACGTcount: A:0.13, C:0.11, G:0.00, T:0.77
Consensus pattern (16 bp):
ATTTTTCTATTTTTCT
Found at i:37789952 original size:7 final size:8
Alignment explanation
Indices: 37789907--37789953 Score: 60
Period size: 8 Copynumber: 5.8 Consensus size: 8
37789897 ACCCACAAAA
*
37789907 ATTTTTTT
1 ATTTTTCT
37789915 ATTTTTCT
1 ATTTTTCT
37789923 -TCTTTTCAT
1 AT-TTTTC-T
37789932 ATTTTTCT
1 ATTTTTCT
37789940 ATTTTTCT
1 ATTTTTCT
37789948 ATTTTT
1 ATTTTT
37789954 TTCACTTTTG
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
7 1 0.03
8 27 0.77
9 6 0.17
10 1 0.03
ACGTcount: A:0.13, C:0.11, G:0.00, T:0.77
Consensus pattern (8 bp):
ATTTTTCT
Found at i:37793838 original size:15 final size:17
Alignment explanation
Indices: 37793818--37793849 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
37793808 ATCATTATGC
37793818 GTCACTT-TTGT-TTTG
1 GTCACTTGTTGTGTTTG
37793833 GTCACTTGTTGTGTTTG
1 GTCACTTGTTGTGTTTG
37793850 TCTTGAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 4 0.27
17 4 0.27
ACGTcount: A:0.06, C:0.12, G:0.25, T:0.56
Consensus pattern (17 bp):
GTCACTTGTTGTGTTTG
Found at i:37796681 original size:20 final size:20
Alignment explanation
Indices: 37796656--37796696 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
37796646 TAGAAAAAAA
37796656 AGAAAACCCAAAGAGAATTT
1 AGAAAACCCAAAGAGAATTT
*
37796676 AGAAAACCCAAAGATAATTT
1 AGAAAACCCAAAGAGAATTT
37796696 A
1 A
37796697 TTAACTCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.56, C:0.15, G:0.12, T:0.17
Consensus pattern (20 bp):
AGAAAACCCAAAGAGAATTT
Found at i:37798200 original size:18 final size:16
Alignment explanation
Indices: 37798177--37798210 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 16
37798167 CTAATATTGT
37798177 ATTTATTAGCTTTTATTA
1 ATTTATTA--TTTTATTA
37798195 ATTTATTATTTTATTA
1 ATTTATTATTTTATTA
37798211 TTCTAAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
18 8 0.50
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (16 bp):
ATTTATTATTTTATTA
Found at i:37798681 original size:45 final size:45
Alignment explanation
Indices: 37798617--37798703 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
37798607 CATCTATCAC
37798617 ATTACTAGGTAATCCTTCCCCCAACTCCACCTCAATAGGATCAAG
1 ATTACTAGGTAATCCTTCCCCCAACTCCACCTCAATAGGATCAAG
* *
37798662 ATTACTAGGTAATCCTTCCCCTAACTCCACTTCAATAGGATC
1 ATTACTAGGTAATCCTTCCCCCAACTCCACCTCAATAGGATC
37798704 GAGACTCATC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.30, C:0.32, G:0.10, T:0.28
Consensus pattern (45 bp):
ATTACTAGGTAATCCTTCCCCCAACTCCACCTCAATAGGATCAAG
Found at i:37801920 original size:15 final size:17
Alignment explanation
Indices: 37801900--37801931 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
37801890 ATCATTATGC
37801900 GTCACTT-TTGT-TTTG
1 GTCACTTGTTGTGTTTG
37801915 GTCACTTGTTGTGTTTG
1 GTCACTTGTTGTGTTTG
37801932 TCTTGAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 4 0.27
17 4 0.27
ACGTcount: A:0.06, C:0.12, G:0.25, T:0.56
Consensus pattern (17 bp):
GTCACTTGTTGTGTTTG
Found at i:37804754 original size:20 final size:20
Alignment explanation
Indices: 37804729--37804769 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
37804719 TAGAAAAAAA
37804729 AGAAAACCCAAAGAGAATTT
1 AGAAAACCCAAAGAGAATTT
*
37804749 AGAAAACCCAAAGATAATTT
1 AGAAAACCCAAAGAGAATTT
37804769 A
1 A
37804770 TTAACTCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.56, C:0.15, G:0.12, T:0.17
Consensus pattern (20 bp):
AGAAAACCCAAAGAGAATTT
Found at i:37806273 original size:18 final size:16
Alignment explanation
Indices: 37806250--37806283 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 16
37806240 CTAATATTGT
37806250 ATTTATTAGCTTTTATTA
1 ATTTATTA--TTTTATTA
37806268 ATTTATTATTTTATTA
1 ATTTATTATTTTATTA
37806284 TTCTAAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
18 8 0.50
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (16 bp):
ATTTATTATTTTATTA
Found at i:37806754 original size:45 final size:45
Alignment explanation
Indices: 37806690--37806776 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
37806680 CATCTATCAC
37806690 ATTACTAGGTAATCCTTCCCCCAACTCCACCTCAATAGGATCAAG
1 ATTACTAGGTAATCCTTCCCCCAACTCCACCTCAATAGGATCAAG
* *
37806735 ATTACTAGGTAATCCTTCCCCTAACTCCACTTCAATAGGATC
1 ATTACTAGGTAATCCTTCCCCCAACTCCACCTCAATAGGATC
37806777 GAGACTCATC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.30, C:0.32, G:0.10, T:0.28
Consensus pattern (45 bp):
ATTACTAGGTAATCCTTCCCCCAACTCCACCTCAATAGGATCAAG
Found at i:37808953 original size:14 final size:14
Alignment explanation
Indices: 37808934--37808974 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
37808924 TGATTGAAAA
37808934 TTCTCTTTGAGTTT
1 TTCTCTTTGAGTTT
**
37808948 TTCTCTAAGA-TTT
1 TTCTCTTTGAGTTT
37808961 TTCTC-TTGAGTTT
1 TTCTCTTTGAGTTT
37808974 T
1 T
37808975 CTTTAGAAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
12 2 0.09
13 12 0.55
14 8 0.36
ACGTcount: A:0.12, C:0.15, G:0.12, T:0.61
Consensus pattern (14 bp):
TTCTCTTTGAGTTT
Found at i:37809701 original size:21 final size:19
Alignment explanation
Indices: 37809648--37809704 Score: 60
Period size: 19 Copynumber: 2.7 Consensus size: 19
37809638 GTATTTCCCG
*
37809648 CAAAAAAATCAATAGAAAAAGT
1 CAAAAAAAT-AA-A-AAAAAGA
37809670 CAAAAAAATAAAAAAAAGA
1 CAAAAAAATAAAAAAAAGA
37809689 CAAAATGAAATAAAAA
1 CAAAA--AAATAAAAA
37809705 TTAAAAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
19 11 0.34
20 1 0.03
21 11 0.34
22 9 0.28
ACGTcount: A:0.75, C:0.07, G:0.07, T:0.11
Consensus pattern (19 bp):
CAAAAAAATAAAAAAAAGA
Found at i:37818014 original size:30 final size:32
Alignment explanation
Indices: 37817980--37818044 Score: 91
Period size: 30 Copynumber: 2.1 Consensus size: 32
37817970 AATATTTTTT
37817980 AAAATAAAAAT-ATT-T-ATATACATCAAAATA
1 AAAATAAAAATAATTATAATATACAT-AAAATA
*
37818010 AAAATAAAAATAATTATAATATAGATAAAATA
1 AAAATAAAAATAATTATAATATACATAAAATA
37818042 AAA
1 AAA
37818045 TTTAAATAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
30 11 0.35
31 3 0.10
32 10 0.32
33 7 0.23
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.28
Consensus pattern (32 bp):
AAAATAAAAATAATTATAATATACATAAAATA
Found at i:37818920 original size:25 final size:25
Alignment explanation
Indices: 37818903--37818986 Score: 78
Period size: 25 Copynumber: 3.2 Consensus size: 25
37818893 ACAATTAAAC
37818903 AAGTAATTCCTCATTACAAAAATCA
1 AAGTAATTCCTCATTACAAAAATCA
* **
37818928 AAGTAATTCCTAAAAACGTAGAAGAATCA
1 AAGTAATTCCTCATTAC--A-AA-AATCA
* * *
37818957 AAGTAATTCTTCATTATAAACATCA
1 AAGTAATTCCTCATTACAAAAATCA
37818982 AAGTA
1 AAGTA
37818987 TCTTACCACT
Statistics
Matches: 46, Mismatches: 9, Indels: 8
0.73 0.14 0.13
Matches are distributed among these distances:
25 23 0.50
26 2 0.04
27 2 0.04
28 2 0.04
29 17 0.37
ACGTcount: A:0.49, C:0.15, G:0.08, T:0.27
Consensus pattern (25 bp):
AAGTAATTCCTCATTACAAAAATCA
Found at i:37830614 original size:15 final size:15
Alignment explanation
Indices: 37830586--37830623 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
37830576 CCGTATACAA
37830586 TTTTTTTTCAATTT-
1 TTTTTTTTCAATTTC
*
37830600 TTTTCTTTTCGATTTC
1 TTTT-TTTTCAATTTC
37830616 TTTTTTTT
1 TTTTTTTT
37830624 TTCGAAACTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 4 0.19
15 13 0.62
16 4 0.19
ACGTcount: A:0.08, C:0.11, G:0.03, T:0.79
Consensus pattern (15 bp):
TTTTTTTTCAATTTC
Found at i:37831133 original size:15 final size:15
Alignment explanation
Indices: 37831113--37831146 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
37831103 ATGCAAAATT
37831113 AGCCTTTCTACTAGA
1 AGCCTTTCTACTAGA
*
37831128 AGCCTTTCTACTAGT
1 AGCCTTTCTACTAGA
37831143 AGCC
1 AGCC
37831147 GAATGGACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (15 bp):
AGCCTTTCTACTAGA
Found at i:37838508 original size:30 final size:30
Alignment explanation
Indices: 37838450--37838508 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
37838440 TTGAAAATGT
* *
37838450 TTGAGCTGAAGTTGAGCTAATTCGAGCTCA
1 TTGAGCTGAAATGGAGCTAATTCGAGCTCA
*
37838480 TTGAGCTGAAATGGAAGTTAATTC-AGCTC
1 TTGAGCTGAAATGG-AGCTAATTCGAGCTC
37838509 GTATTAAAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 17 0.68
31 8 0.32
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (30 bp):
TTGAGCTGAAATGGAGCTAATTCGAGCTCA
Found at i:37859438 original size:23 final size:24
Alignment explanation
Indices: 37859392--37859439 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
37859382 ATAAACTTAA
*
37859392 GACATATTTAAAATGCTCAGATTAT
1 GACATATTTAAAA-GCTCAAATTAT
*
37859417 GACATATTTTAAA-CTCAAATTAT
1 GACATATTTAAAAGCTCAAATTAT
37859440 TGATGTTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 9 0.43
25 12 0.57
ACGTcount: A:0.42, C:0.12, G:0.08, T:0.38
Consensus pattern (24 bp):
GACATATTTAAAAGCTCAAATTAT
Found at i:37874254 original size:12 final size:13
Alignment explanation
Indices: 37874222--37874255 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
37874212 GCTGTTTCGA
*
37874222 TTTCTTTATTTAT
1 TTTCTTTGTTTAT
37874235 TTTCTTTGTTTAT
1 TTTCTTTGTTTAT
37874248 TTT-TTTGT
1 TTTCTTTGT
37874256 GCCGATTCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 5 0.25
13 15 0.75
ACGTcount: A:0.09, C:0.06, G:0.06, T:0.79
Consensus pattern (13 bp):
TTTCTTTGTTTAT
Found at i:37878996 original size:13 final size:11
Alignment explanation
Indices: 37878964--37878994 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
37878954 TGTAGATTCA
37878964 AAAAAAAATCG
1 AAAAAAAATCG
37878975 AAAAAAAATCG
1 AAAAAAAATCG
37878986 AGAAAAAAA
1 A-AAAAAAA
37878995 ATTGCATACG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.63
12 7 0.37
ACGTcount: A:0.77, C:0.06, G:0.10, T:0.06
Consensus pattern (11 bp):
AAAAAAAATCG
Found at i:37894769 original size:21 final size:21
Alignment explanation
Indices: 37894743--37894805 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
37894733 TTGGTATTTG
*
37894743 GGAATTGGTACAAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
37894764 GGAATTGGTATGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
* *
37894785 GGTATTTGGTACGAATTGGTA
1 GG-AATTGGTACGAAATGGTA
37894806 ATGGTTCAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
21 21 0.58
22 15 0.42
ACGTcount: A:0.32, C:0.03, G:0.32, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:37907410 original size:9 final size:9
Alignment explanation
Indices: 37907396--37907465 Score: 63
Period size: 9 Copynumber: 7.4 Consensus size: 9
37907386 TGCTTATTAA
37907396 GTTTAATGT
1 GTTTAATGT
37907405 GTTTAATGT
1 GTTTAATGT
37907414 GTTTTTAATGT
1 G--TTTAATGT
37907425 GTTT--TGT
1 GTTTAATGT
*
37907432 GTTTAATATGA
1 GTTT-A-ATGT
37907443 GTTTAAATGT
1 GTTT-AATGT
*
37907453 GATTAATGT
1 GTTTAATGT
37907462 GTTT
1 GTTT
37907466 GATTGCAGGT
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
7 7 0.14
9 21 0.41
10 6 0.12
11 17 0.33
ACGTcount: A:0.23, C:0.00, G:0.21, T:0.56
Consensus pattern (9 bp):
GTTTAATGT
Found at i:37907422 original size:11 final size:11
Alignment explanation
Indices: 37907397--37907429 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
37907387 GCTTATTAAG
37907397 TTTAATGTG--
1 TTTAATGTGTT
37907406 TTTAATGTGTT
1 TTTAATGTGTT
37907417 TTTAATGTGTT
1 TTTAATGTGTT
37907428 TT
1 TT
37907430 GTGTTTAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 9 0.41
11 13 0.59
ACGTcount: A:0.18, C:0.00, G:0.18, T:0.64
Consensus pattern (11 bp):
TTTAATGTGTT
Found at i:37907585 original size:23 final size:23
Alignment explanation
Indices: 37907559--37907616 Score: 77
Period size: 21 Copynumber: 2.6 Consensus size: 23
37907549 AGTTACATAC
37907559 AAAGGGAGCATTATATATCATTA
1 AAAGGGAGCATTATATATCATTA
37907582 AAA-GGAGC-TGT-TATATCATTA
1 AAAGGGAGCAT-TATATATCATTA
37907603 AAAGGAGAGCATTA
1 AAAGG-GAGCATTA
37907617 CACCTCTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
21 14 0.47
22 7 0.23
23 8 0.27
24 1 0.03
ACGTcount: A:0.43, C:0.09, G:0.21, T:0.28
Consensus pattern (23 bp):
AAAGGGAGCATTATATATCATTA
Found at i:37913411 original size:17 final size:17
Alignment explanation
Indices: 37913389--37913423 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
37913379 AAAGAAAGAC
37913389 AGAAAAAGA-AATCGAAA
1 AGAAAAAGAGAAT-GAAA
37913406 AGAAAAAGAGAATGAAA
1 AGAAAAAGAGAATGAAA
37913423 A
1 A
37913424 AGAGCAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.82
18 3 0.18
ACGTcount: A:0.71, C:0.03, G:0.20, T:0.06
Consensus pattern (17 bp):
AGAAAAAGAGAATGAAA
Found at i:37913485 original size:13 final size:13
Alignment explanation
Indices: 37913467--37913508 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
37913457 TGATACAGAC
37913467 AAGAAAATTGAAA
1 AAGAAAATTGAAA
37913480 AAG-AAATTGAAGA
1 AAGAAAATTGAA-A
* *
37913493 AACAAGATTGAAA
1 AAGAAAATTGAAA
37913506 AAG
1 AAG
37913509 GGTAGTGAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
12 8 0.33
13 9 0.38
14 7 0.29
ACGTcount: A:0.64, C:0.02, G:0.19, T:0.14
Consensus pattern (13 bp):
AAGAAAATTGAAA
Found at i:37927284 original size:13 final size:13
Alignment explanation
Indices: 37927266--37927311 Score: 67
Period size: 13 Copynumber: 3.5 Consensus size: 13
37927256 TATGAAACAG
37927266 AAAAGAAAATTGA
1 AAAAGAAAATTGA
37927279 AAAAGAAAATTGA
1 AAAAGAAAATTGA
*
37927292 AAAAG-AAGTTGA
1 AAAAGAAAATTGA
37927304 AGAAAGAA
1 A-AAAGAA
37927312 GAGAAAATGA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
12 7 0.23
13 22 0.73
14 1 0.03
ACGTcount: A:0.67, C:0.00, G:0.20, T:0.13
Consensus pattern (13 bp):
AAAAGAAAATTGA
Found at i:37927312 original size:13 final size:12
Alignment explanation
Indices: 37927275--37927334 Score: 52
Period size: 13 Copynumber: 4.9 Consensus size: 12
37927265 GAAAAGAAAA
*
37927275 TTGAAAAAGAAAA
1 TTGAAAAAG-AAG
37927288 TTGAAAAAGAAG
1 TTGAAAAAGAAG
37927300 TTGAAGAAAGAAG
1 TTGAA-AAAGAAG
* *
37927313 -AGAAAATG-AG
1 TTGAAAAAGAAG
37927323 TTCGAAAAAGAA
1 TT-GAAAAAGAA
37927335 ACAAAAGAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
10 2 0.05
11 3 0.08
12 16 0.42
13 17 0.45
ACGTcount: A:0.60, C:0.02, G:0.23, T:0.15
Consensus pattern (12 bp):
TTGAAAAAGAAG
Found at i:37938926 original size:20 final size:19
Alignment explanation
Indices: 37938903--37938967 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
37938893 AAGCTCAAAC
37938903 GAGCTAAAGTAAGCTAAATT
1 GAGCTAAAGT-AGCTAAATT
37938923 GAGCTCAAACG-AGCTAAATT
1 GAGCT-AAA-GTAGCTAAATT
* * * *
37938943 AAGCTCATGTGAGCTAAATC
1 GAGCTAAAGT-AGCTAAATT
37938963 GAGCT
1 GAGCT
37938968 GGGAAAAACT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 30 0.83
21 3 0.08
22 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (19 bp):
GAGCTAAAGTAGCTAAATT
Found at i:37940778 original size:33 final size:33
Alignment explanation
Indices: 37940740--37940802 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
37940730 GATTACTCAC
37940740 TTCACTCG-TTTCTTTT-ATAGACTCTCTTTCTTT
1 TTCACTCGATTTCTTTTCA-AG-CTCTCTTTCTTT
*
37940773 TTCACTTGATTTCTTTTCAAGCTCTCTTTC
1 TTCACTCGATTTCTTTTCAAGCTCTCTTTC
37940803 AATTTCTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.13, C:0.25, G:0.06, T:0.56
Consensus pattern (33 bp):
TTCACTCGATTTCTTTTCAAGCTCTCTTTCTTT
Found at i:37941703 original size:11 final size:10
Alignment explanation
Indices: 37941689--37941726 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
37941679 ACTTTTCACT
*
37941689 TTTTTTTGTTC
1 TTTTTTT-TAC
37941700 TTTTTTTTAC
1 TTTTTTTTAC
37941710 TTTTTTTTAC
1 TTTTTTTTAC
37941720 TTTTTTT
1 TTTTTTT
37941727 GCTCACTTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
10 19 0.73
11 7 0.27
ACGTcount: A:0.05, C:0.08, G:0.03, T:0.84
Consensus pattern (10 bp):
TTTTTTTTAC
Found at i:37941725 original size:22 final size:22
Alignment explanation
Indices: 37941681--37941741 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
37941671 CTCGCAAGAC
*
37941681 TTTTCACTTTTTTTTGTTCTTT
1 TTTTCACTTTTTTTTCTTCTTT
*
37941703 TTTTTACTTTTTTTTACTT-TTT
1 TTTTCACTTTTTTTT-CTTCTTT
*
37941725 TTGCTCACTTCTTTTTT
1 TT-TTCACTT-TTTTTT
37941742 TTTTTGAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
22 19 0.59
23 7 0.22
24 6 0.19
ACGTcount: A:0.07, C:0.15, G:0.03, T:0.75
Consensus pattern (22 bp):
TTTTCACTTTTTTTTCTTCTTT
Found at i:37945240 original size:33 final size:33
Alignment explanation
Indices: 37945202--37945264 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
37945192 GATTACTCAC
37945202 TTCACTCG-TTTCTTTT-ATAGACTCTCTTTCTTT
1 TTCACTCGATTTCTTTTCA-AG-CTCTCTTTCTTT
*
37945235 TTCACTTGATTTCTTTTCAAGCTCTCTTTC
1 TTCACTCGATTTCTTTTCAAGCTCTCTTTC
37945265 AATTTCTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.13, C:0.25, G:0.06, T:0.56
Consensus pattern (33 bp):
TTCACTCGATTTCTTTTCAAGCTCTCTTTCTTT
Found at i:37945291 original size:27 final size:29
Alignment explanation
Indices: 37945261--37945314 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
37945251 TCAAGCTCTC
*
37945261 TTTCAA-TTTCTTTTT-TCGCTTTTTCTT
1 TTTCAATTTTCTTTTTCTCACTTTTTCTT
37945288 TTTCAATTTTCTTTTTCTCACTTTTTC
1 TTTCAATTTTCTTTTTCTCACTTTTTC
37945315 GATTTCATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 6 0.25
28 9 0.38
29 9 0.38
ACGTcount: A:0.09, C:0.20, G:0.02, T:0.69
Consensus pattern (29 bp):
TTTCAATTTTCTTTTTCTCACTTTTTCTT
Found at i:37945320 original size:29 final size:27
Alignment explanation
Indices: 37945261--37945321 Score: 77
Period size: 29 Copynumber: 2.2 Consensus size: 27
37945251 TCAAGCTCTC
* **
37945261 TTTCAATTTCTTTTTTCGCTTTTTCTT
1 TTTCAATTTCTTTTTTCACTTTTTCGA
37945288 TTTCAATTTTCTTTTTCTCACTTTTTCGA
1 TTTCAA-TTTCTTTTT-TCACTTTTTCGA
37945317 TTTCA
1 TTTCA
37945322 TTACAATGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 6 0.21
28 9 0.31
29 14 0.48
ACGTcount: A:0.11, C:0.20, G:0.03, T:0.66
Consensus pattern (27 bp):
TTTCAATTTCTTTTTTCACTTTTTCGA
Found at i:37946163 original size:11 final size:10
Alignment explanation
Indices: 37946149--37946186 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
37946139 ACTTTTCACT
37946149 TTTTTTTGTTC
1 TTTTTTT-TTC
*
37946160 TTTTTTTTAC
1 TTTTTTTTTC
37946170 TTTTTTTTTC
1 TTTTTTTTTC
37946180 TTTTTTT
1 TTTTTTT
37946187 GCTCACTTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
10 18 0.72
11 7 0.28
ACGTcount: A:0.03, C:0.08, G:0.03, T:0.87
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:37946194 original size:23 final size:21
Alignment explanation
Indices: 37946141--37946202 Score: 72
Period size: 20 Copynumber: 2.8 Consensus size: 21
37946131 CTCGCAAGAC
37946141 TTTTCACTTTTTTTTGTTCTTTT
1 TTTTCAC-TTTTTTT-TTCTTTT
37946164 TTTT-ACTTTTTTTTTCTTTT
1 TTTTCACTTTTTTTTTCTTTT
37946184 TTTGCTCACTTCTTTTTTT
1 TTT--TCACTT-TTTTTTT
37946203 TTTGAATTTC
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
20 10 0.29
21 7 0.20
22 3 0.09
23 8 0.23
24 7 0.20
ACGTcount: A:0.05, C:0.15, G:0.03, T:0.77
Consensus pattern (21 bp):
TTTTCACTTTTTTTTTCTTTT
Found at i:37948384 original size:20 final size:20
Alignment explanation
Indices: 37948338--37948384 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
37948328 AGCTCGTTTC
*
37948338 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
37948358 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
37948378 CAGCTCA
1 CAGCTCA
37948385 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:37951852 original size:29 final size:29
Alignment explanation
Indices: 37951819--37951891 Score: 119
Period size: 29 Copynumber: 2.5 Consensus size: 29
37951809 ATGTATTAGT
* *
37951819 TTAGGACATATTTAAAACACTTGAACTAA
1 TTAGGACATATTTAAAACACCTAAACTAA
*
37951848 TTAGGACATAATTAAAACACCTAAACTAA
1 TTAGGACATATTTAAAACACCTAAACTAA
37951877 TTAGGACATATTTAA
1 TTAGGACATATTTAA
37951892 TAATATCTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.47, C:0.14, G:0.10, T:0.30
Consensus pattern (29 bp):
TTAGGACATATTTAAAACACCTAAACTAA
Found at i:37955377 original size:16 final size:16
Alignment explanation
Indices: 37955338--37955378 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
37955328 ATACAACCTC
*
37955338 TTTTTTTTATGCACAA
1 TTTTTTTTTTGCACAA
*
37955354 ATTTTTTTTTGCACAA
1 TTTTTTTTTTGCACAA
37955370 TTTTTTTTT
1 TTTTTTTTT
37955379 CAATTCACGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.20, C:0.10, G:0.05, T:0.66
Consensus pattern (16 bp):
TTTTTTTTTTGCACAA
Found at i:37959188 original size:430 final size:431
Alignment explanation
Indices: 37958359--37959209 Score: 1560
Period size: 430 Copynumber: 2.0 Consensus size: 431
37958349 AACTTAATTG
*
37958359 TTCTTGTTGCATTTCTAGCCATTCCAGGCTTCAAGGATCTATTTTGCAACATTCTTTGGCGTCAA
1 TTCTTGTTGCATTTCTAGCCATTCCAAGCTTCAAGGATCTATTTTGCAACATTCTTTGGCGTCAA
*
37958424 GAAACATCCTTTAATTCATAATTTTCCTCCTTTCTTGCTGCCCAAGTATTCTTCTTCTAATCCAA
66 GAAACATCCTTTAATTCATAATTTTCCTCCTTTCTTGCTGCCCAAGTATTCTGCTTCTAATCCAA
**
37958489 TTTGCTTTGCTGGGTTTTTGAGTTTTATTTGTTGTTTGTGTTCTCCTTGTCAGATTCAGCTTGGG
131 TTCACTTTGCTGGGTTTTTGAGTTTTATTTGTTGTTTGTGTTCTCCTTGTCAGATTCAGCTTGGG
*
37958554 GATTCTTTTATTGAAGTTAAATTTCATTTTCGTTGCGTCCAAACAACCCTATTAATAAGTGTTTA
196 GATTCTTTTATTGAAGATAAATTTCATTTTCGTTGCGTCCAAACAACCCTATTAATAAGTGTTTA
37958619 GATTATTGTCTAATTCCTTCTTGTTTTGTGGCGTTTCTTTATAGATCTATCGCTGTTAAGATTGA
261 GATTATTGTCTAATTCCTTCTTGTTTTGTGGCGTTTCTTTATAGATCTATCGCTGTTAAGATTGA
* *
37958684 TTTTCTGTTTTTGTTTTAGATCCAAGTGTCTATCGTTTTCATAGGATTCTCCCGTGACTTGACAA
326 TTTTCTGTTTTCGTTTCAGATCCAAGTGTCTATCGTTTTCATAGGATTCTCCCGTGACTTGACAA
* *
37958749 CTTGATCTTGGTCTGCGCACAACCCTCTATCGTTTTCTGTT
391 CTCGATCTTGGTCCGCGCACAACCCTCTATCGTTTTCTGTT
37958790 TTCTTGTTGCATTTCTAGCCATTCCAAGCTTCAAGGATCTATTTTGCAACATTCTTTGGCGTCAA
1 TTCTTGTTGCATTTCTAGCCATTCCAAGCTTCAAGGATCTATTTTGCAACATTCTTTGGCGTCAA
37958855 GAAACATCCTTTAATTCATAATTTTCCTCCTTTCTTGCTGCCCAAGTATTCTGCTTCTAATCCAA
66 GAAACATCCTTTAATTCATAATTTTCCTCCTTTCTTGCTGCCCAAGTATTCTGCTTCTAATCCAA
*
37958920 TTCACTTTGCTGGGTTTTTGAGTTTTCTTTGTTGTTTGTGTTCTCCTTGTCAGATTCAGCTT-GG
131 TTCACTTTGCTGGGTTTTTGAGTTTTATTTGTTGTTTGTGTTCTCCTTGTCAGATTCAGCTTGGG
*
37958984 GATTCTTTTATTGAAGATAAATTTCATTTTCGTTGCGTCCAAACAACCCTATTAGTAAGTGTTTA
196 GATTCTTTTATTGAAGATAAATTTCATTTTCGTTGCGTCCAAACAACCCTATTAATAAGTGTTTA
* *
37959049 GATTATTGTCTGATTCCTTCTTGTTTTGTGGCGTTTCTTTATAGATCTATTGCTGTTAAGATTGA
261 GATTATTGTCTAATTCCTTCTTGTTTTGTGGCGTTTCTTTATAGATCTATCGCTGTTAAGATTGA
*
37959114 TTTTCTGTTTTCGTTTCAGATCCAAGTGTCTATCGTTTTCGTAGGATTCTCCCGTGACTTGACAA
326 TTTTCTGTTTTCGTTTCAGATCCAAGTGTCTATCGTTTTCATAGGATTCTCCCGTGACTTGACAA
*
37959179 CTCGATCTTGGTCCGCGCGCAACCCTCTATC
391 CTCGATCTTGGTCCGCGCACAACCCTCTATC
37959210 AATGGTTCAT
Statistics
Matches: 405, Mismatches: 15, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
430 218 0.54
431 187 0.46
ACGTcount: A:0.19, C:0.20, G:0.16, T:0.44
Consensus pattern (431 bp):
TTCTTGTTGCATTTCTAGCCATTCCAAGCTTCAAGGATCTATTTTGCAACATTCTTTGGCGTCAA
GAAACATCCTTTAATTCATAATTTTCCTCCTTTCTTGCTGCCCAAGTATTCTGCTTCTAATCCAA
TTCACTTTGCTGGGTTTTTGAGTTTTATTTGTTGTTTGTGTTCTCCTTGTCAGATTCAGCTTGGG
GATTCTTTTATTGAAGATAAATTTCATTTTCGTTGCGTCCAAACAACCCTATTAATAAGTGTTTA
GATTATTGTCTAATTCCTTCTTGTTTTGTGGCGTTTCTTTATAGATCTATCGCTGTTAAGATTGA
TTTTCTGTTTTCGTTTCAGATCCAAGTGTCTATCGTTTTCATAGGATTCTCCCGTGACTTGACAA
CTCGATCTTGGTCCGCGCACAACCCTCTATCGTTTTCTGTT
Found at i:37963795 original size:27 final size:27
Alignment explanation
Indices: 37963764--37963941 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
37963754 TAAATTGTAC
*
37963764 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
37963791 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
37963817 ATTCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
37963845 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
37963872 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * * *
37963900 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
37963927 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37963942 GACTAATATA
Statistics
Matches: 126, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 102 0.81
28 24 0.19
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:37963914 original size:55 final size:54
Alignment explanation
Indices: 37963764--37963941 Score: 223
Period size: 54 Copynumber: 3.3 Consensus size: 54
37963754 TAAATTGTAC
* **
37963764 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGT
* * * * *
37963817 ATTCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATGT
1 A-GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGT
* * *
37963872 AGCACTAAGTGTGCGAGTTTGATTATGTGGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGT
*
37963927 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37963942 GACTAATATA
Statistics
Matches: 106, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
53 1 0.01
54 58 0.55
55 47 0.44
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGT
Found at i:37971803 original size:27 final size:27
Alignment explanation
Indices: 37971772--37971949 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
37971762 TAAATTGTAC
*
37971772 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
37971799 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
37971825 ATTCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
37971853 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
37971880 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * * *
37971908 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
37971935 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37971950 GACTAATATA
Statistics
Matches: 126, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 102 0.81
28 24 0.19
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:37971922 original size:55 final size:54
Alignment explanation
Indices: 37971772--37971949 Score: 223
Period size: 54 Copynumber: 3.3 Consensus size: 54
37971762 TAAATTGTAC
* **
37971772 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGT
* * * * *
37971825 ATTCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATGT
1 A-GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGT
* * *
37971880 AGCACTAAGTGTGCGAGTTTGATTATGTGGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGT
*
37971935 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37971950 GACTAATATA
Statistics
Matches: 106, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
53 1 0.01
54 58 0.55
55 47 0.44
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGT
Found at i:37974816 original size:46 final size:46
Alignment explanation
Indices: 37974764--37974857 Score: 163
Period size: 46 Copynumber: 2.0 Consensus size: 46
37974754 ATAGTGTGGC
*
37974764 GTTCATCATATACCAAGGTTCTTATCA-TCATTGATAGTGGGTCGAG
1 GTTCATCATATACCAAGGTTCCTATCATTC-TTGATAGTGGGTCGAG
37974810 GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTCGAG
1 GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTCGAG
37974856 GT
1 GT
37974858 CTTTTCTTTG
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
46 44 0.96
47 2 0.04
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (46 bp):
GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTCGAG
Found at i:37994119 original size:11 final size:10
Alignment explanation
Indices: 37994103--37994132 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
37994093 TCGTAATGTA
37994103 AAAAAAAAGTC
1 AAAAAAAA-TC
37994114 AAAAAAAATC
1 AAAAAAAATC
37994124 AAAAAAAAT
1 AAAAAAAAT
37994133 TTGAGTTGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 11 0.58
11 8 0.42
ACGTcount: A:0.80, C:0.07, G:0.03, T:0.10
Consensus pattern (10 bp):
AAAAAAAATC
Found at i:37994238 original size:11 final size:12
Alignment explanation
Indices: 37994208--37994244 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
37994198 AAAAGAGAAG
37994208 AAATTCAATAAA
1 AAATTCAATAAA
37994220 AAATTCAATAAA
1 AAATTCAATAAA
37994232 AAA-TCAA-AAA
1 AAATTCAATAAA
37994242 AAA
1 AAA
37994245 AAAAGAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 6 0.24
11 4 0.16
12 15 0.60
ACGTcount: A:0.73, C:0.08, G:0.00, T:0.19
Consensus pattern (12 bp):
AAATTCAATAAA
Found at i:37994298 original size:13 final size:13
Alignment explanation
Indices: 37994237--37994303 Score: 55
Period size: 13 Copynumber: 4.8 Consensus size: 13
37994227 ATAAAAAATC
*
37994237 AAAAAAAAAAAAG
1 AAAAAAAAAGAAG
37994250 AAAAAAAAAGAAGTG
1 AAAAAAAAAGAA--G
37994265 ACAAAAAAAATCG-AG
1 A-AAAAAAAA--GAAG
*
37994280 TTAAAAAAAAGAAG
1 -AAAAAAAAAGAAG
37994294 AAAAAAAAAG
1 AAAAAAAAAG
37994304 TGAAAAGTCT
Statistics
Matches: 44, Mismatches: 3, Indels: 14
0.72 0.05 0.23
Matches are distributed among these distances:
13 21 0.48
14 2 0.05
15 11 0.25
16 8 0.18
17 1 0.02
18 1 0.02
ACGTcount: A:0.78, C:0.03, G:0.13, T:0.06
Consensus pattern (13 bp):
AAAAAAAAAGAAG
Found at i:37995388 original size:48 final size:47
Alignment explanation
Indices: 37995309--37995414 Score: 135
Period size: 48 Copynumber: 2.2 Consensus size: 47
37995299 GAGTGTCATG
*
37995309 GAAAAAGAAATTGAGATTGAAAAAGGATGTGA-AAAAGAGAAAGAAATC
1 GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAA-AGAAA-AAATC
* *
37995357 GAAAAAGAAATTGAGATTGAACAAAAG-TGTGAGGAAAAAGAGAAAATT
1 GAAAAAGAAATTGAGATTGAA-AAAAGATGTGA-GAAAAAGAAAAAATC
37995405 GAAAAAGAAA
1 GAAAAAGAAA
37995415 GAAAAGACAA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.59, C:0.02, G:0.25, T:0.14
Consensus pattern (47 bp):
GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAAAGAAAAAATC
Found at i:37998633 original size:11 final size:11
Alignment explanation
Indices: 37998617--37998646 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
37998607 GGAAATTTGA
37998617 AAAAAAAATTC
1 AAAAAAAATTC
37998628 AAAAAAAATTC
1 AAAAAAAATTC
37998639 AAAAAAAA
1 AAAAAAAA
37998647 ATCGAAGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.80, C:0.07, G:0.00, T:0.13
Consensus pattern (11 bp):
AAAAAAAATTC
Found at i:37999597 original size:14 final size:15
Alignment explanation
Indices: 37999578--37999606 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
37999568 AAATCGAGAG
37999578 ATGAAA-AAAAAGAA
1 ATGAAAGAAAAAGAA
37999592 ATGAAAGAAAAAGAA
1 ATGAAAGAAAAAGAA
37999607 CAAGAAATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.07
Consensus pattern (15 bp):
ATGAAAGAAAAAGAA
Found at i:38010366 original size:12 final size:12
Alignment explanation
Indices: 38010349--38010381 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
38010339 GGAAATTTGA
38010349 AAAAAAAAATTC
1 AAAAAAAAATTC
38010361 AAAAAAAAATTC
1 AAAAAAAAATTC
38010373 AAAAAAAAA
1 AAAAAAAAA
38010382 ATCGAAGTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.82, C:0.06, G:0.00, T:0.12
Consensus pattern (12 bp):
AAAAAAAAATTC
Found at i:38011489 original size:48 final size:47
Alignment explanation
Indices: 38011410--38011515 Score: 135
Period size: 48 Copynumber: 2.2 Consensus size: 47
38011400 GAGTGTCATG
*
38011410 GAAAAAGAAATTGAGATTGAAAAAGGATGTGA-AAAAGAGAAAGAAATC
1 GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAA-AGAAA-AAATC
* *
38011458 GAAAAAGAAATTGAGATTGAACAAAAG-TGTGAGGAAAAAGAGAAAATT
1 GAAAAAGAAATTGAGATTGAA-AAAAGATGTGA-GAAAAAGAAAAAATC
38011506 GAAAAAGAAA
1 GAAAAAGAAA
38011516 GAAAAGACAA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.59, C:0.02, G:0.25, T:0.14
Consensus pattern (47 bp):
GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAAAGAAAAAATC
Found at i:38018623 original size:22 final size:24
Alignment explanation
Indices: 38018589--38018633 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 24
38018579 CTTGGACCAA
38018589 GATTTCCAAGA-T-TTGAAATCTT
1 GATTTCCAAGATTCTTGAAATCTT
**
38018611 GATTTCCTTGATTCTTGAAATCT
1 GATTTCCAAGATTCTTGAAATCT
38018634 CTTCGAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 9 0.47
23 1 0.05
24 9 0.47
ACGTcount: A:0.27, C:0.16, G:0.13, T:0.44
Consensus pattern (24 bp):
GATTTCCAAGATTCTTGAAATCTT
Found at i:38020173 original size:36 final size:37
Alignment explanation
Indices: 38020101--38020178 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
38020091 TTATTACGAA
* *
38020101 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
38020138 GTCTTACCCGGACAAAATC-CCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
38020174 GTCTT
1 GTCTT
38020179 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:38020375 original size:47 final size:47
Alignment explanation
Indices: 38020297--38020581 Score: 482
Period size: 47 Copynumber: 6.1 Consensus size: 47
38020287 CCCTTCGGGA
* * * * * * *
38020297 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
38020344 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38020391 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38020438 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38020485 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38020532 CTTATCACATATATACA-TTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38020578 CTTA
1 CTTA
38020582 CTATCATTTC
Statistics
Matches: 227, Mismatches: 11, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
46 33 0.15
47 194 0.85
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:38024011 original size:40 final size:39
Alignment explanation
Indices: 38023966--38024146 Score: 172
Period size: 40 Copynumber: 4.6 Consensus size: 39
38023956 CCAGCATGAT
* *
38023966 TGCTCTTCCGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTT-CGGACTTAGCCCGGATATATCACTAGCACGAA
* *
38024006 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGG-ACTTAGCCCGGATATATCACTAGCACGAA
* * * *
38024046 TGCTC-TCGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGACTTAGCCCGGATATA-TCACTAGCACGAA
* *
38024085 TGC-CTTCGGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
38024125 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTC-GGACTTAGCCCGGA
38024147 CATCATTCGA
Statistics
Matches: 117, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
38 15 0.13
39 24 0.21
40 70 0.60
41 8 0.07
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
TGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:38024092 original size:78 final size:80
Alignment explanation
Indices: 38023953--38024108 Score: 192
Period size: 78 Copynumber: 2.0 Consensus size: 80
38023943 CGAATACACG
* * * *
38023953 TCACCAGCATGATTGCTCTTCCGGATTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAA
1 TCACCAGCATGAATGCTCTTCCGGACTTAGCACGGATATATAACTAGCACCAATGCTCTTCGGAA
38024018 CTTAGCCCGGATACA
66 CTTAGCCCGGATACA
* * * *
38024033 TCACTAGCATGAATGCTC-T-CGGACTTAGCCCGGATTTAGTAACTCGCACCAATGC-CTTCGGA
1 TCACCAGCATGAATGCTCTTCCGGACTTAGCACGGATATA-TAACTAGCACCAATGCTCTTCGGA
* *
38024095 TCTTAGTCCGGATA
65 ACTTAGCCCGGATA
38024109 TGGTCACTTA
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
78 35 0.54
79 14 0.22
80 16 0.25
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.27
Consensus pattern (80 bp):
TCACCAGCATGAATGCTCTTCCGGACTTAGCACGGATATATAACTAGCACCAATGCTCTTCGGAA
CTTAGCCCGGATACA
Found at i:38024577 original size:43 final size:43
Alignment explanation
Indices: 38024516--38024661 Score: 292
Period size: 43 Copynumber: 3.4 Consensus size: 43
38024506 CATGCATTTA
38024516 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
38024559 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
38024602 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
38024645 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
38024662 TGAAAACCAA
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 103 1.00
ACGTcount: A:0.27, C:0.36, G:0.15, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:38026557 original size:36 final size:37
Alignment explanation
Indices: 38026510--38026587 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
38026500 TTATTACGAA
* * *
38026510 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCG
1 GTCTTACCCGGACAAAATTCCCCACACGAAGTCATCG
*
38026546 GTCTTACCCGGACAAAATTCCCCACACGTAGTCATCG
1 GTCTTACCCGGACAAAATTCCCCACACGAAGTCATCG
38026583 GTCTT
1 GTCTT
38026588 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 16 0.43
37 21 0.57
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCCACACGAAGTCATCG
Found at i:38026823 original size:48 final size:47
Alignment explanation
Indices: 38026708--38027030 Score: 404
Period size: 48 Copynumber: 7.1 Consensus size: 47
38026698 CCTTCGGGGA
* * * * * * *
38026708 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACT-CGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
38026754 C-CGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38026800 CTTAATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTT-ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
38026848 CTTATTACATATATACACTTTCACA-TCATCACACTATGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACA-T-CGGCCATTAGGC
*
38026896 CTTATCACATATAT-CACTTTCACATTCAT--CATCGGCTATTA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38026939 CTTATTCACATAT-TA-ACTTT--CA-T-ATCACATCGGCCATTAGGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38026981 CTTA-CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38027027 CTTA
1 CTTA
38027031 CTATATCACA
Statistics
Matches: 243, Mismatches: 17, Indels: 34
0.83 0.06 0.12
Matches are distributed among these distances:
39 2 0.01
40 8 0.03
41 15 0.06
42 11 0.05
43 12 0.05
44 17 0.07
45 35 0.14
46 37 0.15
47 32 0.13
48 74 0.30
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:38026974 original size:85 final size:91
Alignment explanation
Indices: 38026759--38027030 Score: 389
Period size: 95 Copynumber: 3.0 Consensus size: 91
38026749 CTCGCCCGTC
38026759 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAATCACATATATACACTTTCA
1 ACATATATACACTTT-ACA-TCATCACATCGGCCATTAGGCCTT-ATCACATATATACACTTTCA
38026824 CATTCATCACATCGGCCATTAGGCCTTATT
63 CATTCAT-ACATCGGCCATTAGGCCTTATT
*
38026854 ACATATATACACTTTCACATCATCACACTATGGCCATTAGGCCTTATCACATATAT-CACTTTCA
1 ACATATATACACTTT-ACATCATCACA-T-CGGCCATTAGGCCTTATCACATATATACACTTTCA
*
38026918 CATTCAT-CATCGGCTATTA-GCCTTATT
63 CATTCATACATCGGCCATTAGGCCTTATT
38026945 CACATAT-TA-ACTTT-CAT-ATCACATCGGCCATTAGGCCTTA-CACATATATACACTTTCACA
1 -ACATATATACACTTTACATCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACA
38027005 TTCATCACATCGGCCATTAGGCCTTA
65 TTCAT-ACATCGGCCATTAGGCCTTA
38027031 CTATATCACA
Statistics
Matches: 166, Mismatches: 4, Indels: 21
0.87 0.02 0.11
Matches are distributed among these distances:
84 9 0.05
85 30 0.18
86 1 0.01
87 17 0.10
88 9 0.05
90 5 0.03
91 10 0.06
92 17 0.10
94 23 0.14
95 31 0.19
96 14 0.08
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.33
Consensus pattern (91 bp):
ACATATATACACTTTACATCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
TCATACATCGGCCATTAGGCCTTATT
Found at i:38108969 original size:20 final size:20
Alignment explanation
Indices: 38108923--38108969 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
38108913 AGCTCGTTTC
*
38108923 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* * *
38108943 GAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
38108963 CAGCTCA
1 CAGCTCA
38108970 ATCTTAATCC
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.30, C:0.34, G:0.15, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:38111724 original size:23 final size:22
Alignment explanation
Indices: 38111672--38111724 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
38111662 TCCACGTCTT
*
38111672 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
38111694 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
38111717 TTTCTTTT
1 TTTCTTTT
38111725 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:38127153 original size:12 final size:12
Alignment explanation
Indices: 38127138--38127169 Score: 55
Period size: 12 Copynumber: 2.6 Consensus size: 12
38127128 ATTTTTATTT
38127138 TTATTTATTTAC
1 TTATTTATTTAC
38127150 TTATTTATTTAC
1 TTATTTATTTAC
38127162 TTAGTTTA
1 TTA-TTTA
38127170 AATTTTTATG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 15 0.79
13 4 0.21
ACGTcount: A:0.25, C:0.06, G:0.03, T:0.66
Consensus pattern (12 bp):
TTATTTATTTAC
Found at i:38130939 original size:11 final size:11
Alignment explanation
Indices: 38130912--38130946 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
38130902 GTTGTAAAGT
38130912 TTTATT-TTTA
1 TTTATTATTTA
38130922 TTT-TTATTTA
1 TTTATTATTTA
38130932 TTTATTATTTA
1 TTTATTATTTA
38130943 TTTA
1 TTTA
38130947 CTTAGTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 2 0.09
10 10 0.43
11 11 0.48
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTATTATTTA
Found at i:38139776 original size:25 final size:25
Alignment explanation
Indices: 38139731--38139778 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
38139721 GTTAAAGTGC
* *
38139731 AGAATTTTCTTTGAGGTTTTCTTCA
1 AGAATTCTCTTTGAGGCTTTCTTCA
38139756 AGAATTCTCTCTTGA-GCTTTCTT
1 AGAATTCTCT-TTGAGGCTTTCTT
38139779 TAGAAGTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 16 0.80
26 4 0.20
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.50
Consensus pattern (25 bp):
AGAATTCTCTTTGAGGCTTTCTTCA
Found at i:38139975 original size:12 final size:13
Alignment explanation
Indices: 38139943--38139976 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
38139933 GCTGTTTCGA
*
38139943 TTTCTTTATTTAT
1 TTTCTTTGTTTAT
38139956 TTTCTTTGTTTAT
1 TTTCTTTGTTTAT
38139969 TTT-TTTGT
1 TTTCTTTGT
38139977 GCCGATTCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 5 0.25
13 15 0.75
ACGTcount: A:0.09, C:0.06, G:0.06, T:0.79
Consensus pattern (13 bp):
TTTCTTTGTTTAT
Found at i:38150212 original size:13 final size:13
Alignment explanation
Indices: 38150196--38150229 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
38150186 TATACTTCGA
38150196 TTTTTTTTT-AAT
1 TTTTTTTTTAAAT
*
38150208 TTTTTTTTCAAAT
1 TTTTTTTTTAAAT
38150221 TTTTTTTTT
1 TTTTTTTTT
38150230 CGAATTTCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 8 0.42
13 11 0.58
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTTTTTTTAAAT
Found at i:38150230 original size:14 final size:13
Alignment explanation
Indices: 38150196--38150236 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
38150186 TATACTTCGA
38150196 TTTTTTTTT-AA-
1 TTTTTTTTTCAAT
38150207 TTTTTTTTTCAAAT
1 TTTTTTTTTC-AAT
38150221 TTTTTTTTTCGAAT
1 TTTTTTTTTC-AAT
38150235 TT
1 TT
38150237 CCTCTTCTCC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
11 9 0.35
13 2 0.08
14 15 0.58
ACGTcount: A:0.17, C:0.05, G:0.02, T:0.76
Consensus pattern (13 bp):
TTTTTTTTTCAAT
Found at i:38155803 original size:10 final size:10
Alignment explanation
Indices: 38155788--38155849 Score: 52
Period size: 10 Copynumber: 5.9 Consensus size: 10
38155778 TTTGAACCAT
*
38155788 TACCAATTCG
1 TACCAATTCA
*
38155798 TACCAAATACCA
1 TACC-AAT-TCA
*
38155810 TACCATTTCA
1 TACCAATTCA
38155820 TACCAATTCCA
1 TACCAATT-CA
* *
38155831 TACCATTTCG
1 TACCAATTCA
38155841 TACCAATTC
1 TACCAATTC
38155850 CCAAATACCA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
10 22 0.54
11 14 0.34
12 5 0.12
ACGTcount: A:0.34, C:0.32, G:0.03, T:0.31
Consensus pattern (10 bp):
TACCAATTCA
Found at i:38155833 original size:21 final size:21
Alignment explanation
Indices: 38155788--38155850 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
38155778 TTTGAACCAT
* *
38155788 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
*
38155810 TACCATTTCATACCAATTCCA
1 TACCATTTCGTACCAATTCCA
38155831 TACCATTTCGTACCAATTCC
1 TACCATTTCGTACCAATTCC
38155851 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 25 0.68
22 12 0.32
ACGTcount: A:0.33, C:0.33, G:0.03, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:38160462 original size:20 final size:20
Alignment explanation
Indices: 38160434--38160509 Score: 93
Period size: 20 Copynumber: 3.9 Consensus size: 20
38160424 AGCTTATTTT
*
38160434 TTAGTTCATTCGAGCTCAAA
1 TTAGCTCATTCGAGCTCAAA
*
38160454 TTAGCTCATTCGAGCTCAAG
1 TTAGCTCATTCGAGCTCAAA
* *
38160474 TCAGCTCATTCGAGCT-TAA
1 TTAGCTCATTCGAGCTCAAA
38160493 TTCAGCTCATT-GAGCTC
1 TT-AGCTCATTCGAGCTC
38160510 GTTATTAGCT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
19 7 0.15
20 41 0.85
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (20 bp):
TTAGCTCATTCGAGCTCAAA
Found at i:38160469 original size:10 final size:10
Alignment explanation
Indices: 38160439--38160509 Score: 53
Period size: 10 Copynumber: 7.2 Consensus size: 10
38160429 ATTTTTTAGT
38160439 TCATTCGAGC
1 TCATTCGAGC
38160449 TCAAATT--AGC
1 TC--ATTCGAGC
38160459 TCATTCGAGC
1 TCATTCGAGC
*
38160469 TCAAGTC-AGC
1 TC-ATTCGAGC
38160479 TCATTCGAGC
1 TCATTCGAGC
*
38160489 TTAATTC-AGC
1 -TCATTCGAGC
38160499 TCATT-GAGC
1 TCATTCGAGC
38160508 TC
1 TC
38160510 GTTATTAGCT
Statistics
Matches: 49, Mismatches: 4, Indels: 17
0.70 0.06 0.24
Matches are distributed among these distances:
8 3 0.06
9 12 0.24
10 23 0.47
11 8 0.16
12 3 0.06
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (10 bp):
TCATTCGAGC
Found at i:38162448 original size:28 final size:27
Alignment explanation
Indices: 38162388--38162438 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
38162378 AGTATTCAGT
*
38162388 ATTG-AAAAAAAAGAAAAAAAATCGAA
1 ATTGAAAAAAAAAGAAAAAAAATAGAA
38162414 ATTGAAAAAAAAAG-AAAAAAATAGA
1 ATTGAAAAAAAAAGAAAAAAAATAGA
38162439 GTGATTGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 14 0.61
27 9 0.39
ACGTcount: A:0.75, C:0.02, G:0.12, T:0.12
Consensus pattern (27 bp):
ATTGAAAAAAAAAGAAAAAAAATAGAA
Found at i:38164996 original size:20 final size:20
Alignment explanation
Indices: 38164968--38165041 Score: 89
Period size: 20 Copynumber: 3.8 Consensus size: 20
38164958 AGCTTATTTT
*
38164968 TTAGTTCATTCGAGCTCAAA
1 TTAGCTCATTCGAGCTCAAA
* *
38164988 TTAGCTCATTCAAGCTCAAG
1 TTAGCTCATTCGAGCTCAAA
*
38165008 TGAGCTCATTCGAGCTC-AA
1 TTAGCTCATTCGAGCTCAAA
38165027 TTCAGCTCATT-GAGC
1 TT-AGCTCATTCGAGC
38165042 ACGTTATTAG
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
19 6 0.13
20 40 0.87
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (20 bp):
TTAGCTCATTCGAGCTCAAA
Found at i:38169313 original size:20 final size:20
Alignment explanation
Indices: 38169285--38169360 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
38169275 AGCTTATTTT
*
38169285 TTAGTTCATTCGAGCTCAAA
1 TTAGCTCATTCGAGCTCAAA
*
38169305 TTAGCTCATTCGAGCTCAAG
1 TTAGCTCATTCGAGCTCAAA
*
38169325 TCAGCTCATTCGAGCTC-AA
1 TTAGCTCATTCGAGCTCAAA
38169344 TTCAGCTCATT-GAGCTC
1 TT-AGCTCATTCGAGCTC
38169361 GTTATTAGCT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.16
20 42 0.84
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (20 bp):
TTAGCTCATTCGAGCTCAAA
Found at i:38169320 original size:10 final size:10
Alignment explanation
Indices: 38169290--38169360 Score: 62
Period size: 10 Copynumber: 7.2 Consensus size: 10
38169280 ATTTTTTAGT
38169290 TCATTCGAGC
1 TCATTCGAGC
38169300 TCAAATT--AGC
1 TC--ATTCGAGC
38169310 TCATTCGAGC
1 TCATTCGAGC
*
38169320 TCAAGTC-AGC
1 TC-ATTCGAGC
38169330 TCATTCGAGC
1 TCATTCGAGC
38169340 TCAATTC-AGC
1 TC-ATTCGAGC
38169350 TCATT-GAGC
1 TCATTCGAGC
38169359 TC
1 TC
38169361 GTTATTAGCT
Statistics
Matches: 51, Mismatches: 2, Indels: 17
0.73 0.03 0.24
Matches are distributed among these distances:
8 3 0.06
9 11 0.22
10 27 0.53
11 7 0.14
12 3 0.06
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (10 bp):
TCATTCGAGC
Found at i:38173099 original size:25 final size:25
Alignment explanation
Indices: 38173070--38173120 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
38173060 TTAAAACAAC
38173070 TTCTAAAG-AAAACCCAAGAGAGAAT
1 TTCTAAAGAAAAACCCAA-AGAGAAT
* *
38173095 TTCTAGAGAAAAACTCAAAGAGAAT
1 TTCTAAAGAAAAACCCAAAGAGAAT
38173120 T
1 T
38173121 CTGCACTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.20
Consensus pattern (25 bp):
TTCTAAAGAAAAACCCAAAGAGAAT
Done.