Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 145 of 207
Found at i:44629041 original size:3 final size:3
Alignment explanation
Indices: 44629033--44629067 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
44629023 CTCATGCTTA
44629033 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
44629068 AGACAAAGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:44630406 original size:19 final size:19
Alignment explanation
Indices: 44630384--44630421 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
44630374 TCAATCATCC
44630384 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
44630403 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
44630422 AATCTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:44632267 original size:19 final size:18
Alignment explanation
Indices: 44632243--44632291 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 18
44632233 TACAATTTTG
44632243 TCAAAATTAGCCACATTCA
1 TCAAAA-TAGCCACATTCA
*
44632262 TCAAAATATCCCACATTCA
1 TCAAAATA-GCCACATTCA
44632281 TCAAAATAGCC
1 TCAAAATAGCC
44632292 CTCGACTCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 4 0.15
19 23 0.85
ACGTcount: A:0.43, C:0.29, G:0.04, T:0.24
Consensus pattern (18 bp):
TCAAAATAGCCACATTCA
Found at i:44639160 original size:50 final size:50
Alignment explanation
Indices: 44639045--44639343 Score: 391
Period size: 50 Copynumber: 5.8 Consensus size: 50
44639035 CATCATAACA
* ** *
44639045 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* *
44639096 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
44639146 TGCCAACGCCATGTCCCAGACATGGTCTTACATTGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
** *
44639196 TGCCAACACCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
44639246 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTATCGTGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACC--TC-TCATC-T-CGG
* *
44639301 ATGCCAATGCCATGTTCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
44639344 TTACCCAAAT
Statistics
Matches: 222, Mismatches: 20, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
50 140 0.63
51 34 0.15
52 2 0.01
53 4 0.02
54 3 0.01
55 2 0.01
56 37 0.17
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:44647943 original size:10 final size:10
Alignment explanation
Indices: 44647928--44647964 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
44647918 ATTAACATGT
44647928 TTAATTTTAA
1 TTAATTTTAA
44647938 TTAATTTTAA
1 TTAATTTTAA
*
44647948 TTAATTTTGA
1 TTAATTTTAA
44647958 TT-ATTTT
1 TTAATTTT
44647965 CGATAGATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
9 5 0.19
10 21 0.81
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (10 bp):
TTAATTTTAA
Found at i:44653962 original size:6 final size:6
Alignment explanation
Indices: 44653941--44653995 Score: 53
Period size: 6 Copynumber: 9.3 Consensus size: 6
44653931 AAATGCTCGT
*
44653941 GAAAAA -AAAGAA -AAAAA GAAAAA GAAAAA -TAAAA GAAAAA GAACAAA
1 GAAAAA GAAA-AA GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAA-AAA
*
44653988 AAAAAA GA
1 GAAAAA GA
44653996 GCATATGTAC
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
5 9 0.22
6 27 0.66
7 5 0.12
ACGTcount: A:0.84, C:0.02, G:0.13, T:0.02
Consensus pattern (6 bp):
GAAAAA
Found at i:44653963 original size:17 final size:16
Alignment explanation
Indices: 44653941--44653992 Score: 59
Period size: 17 Copynumber: 3.0 Consensus size: 16
44653931 AAATGCTCGT
44653941 GAAAAAAAAGAAAAAAA
1 GAAAAAAAA-AAAAAAA
*
44653958 GAAAAAGAAAAATAAAA
1 GAAAAA-AAAAAAAAAA
44653975 GAAAAAGAACAAAAAAAA
1 GAAAAA-AA-AAAAAAAA
44653993 AGAGCATATG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
17 21 0.68
18 10 0.32
ACGTcount: A:0.85, C:0.02, G:0.12, T:0.02
Consensus pattern (16 bp):
GAAAAAAAAAAAAAAA
Found at i:44654725 original size:10 final size:10
Alignment explanation
Indices: 44654684--44654723 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
44654674 ATTAAAATTT
44654684 TTAATTTTAA
1 TTAATTTTAA
44654694 TTAATTTTATAA
1 TTAA-TTT-TAA
*
44654706 TTAATTTTGA
1 TTAATTTTAA
44654716 TTAATTTT
1 TTAATTTT
44654724 GAAAATTTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
10 14 0.52
11 6 0.22
12 7 0.26
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (10 bp):
TTAATTTTAA
Found at i:44662991 original size:28 final size:28
Alignment explanation
Indices: 44662957--44663157 Score: 264
Period size: 28 Copynumber: 7.2 Consensus size: 28
44662947 CAGTGATAGT
*
44662957 ACAGTGTGGGCCTTAGCCCAATATAGTA
1 ACAGTGTGGGCCTTAGCCCAATACAGTA
*
44662985 ACAGTGTGGGCTTTAGCCCAATACAGTA
1 ACAGTGTGGGCCTTAGCCCAATACAGTA
44663013 ACAGTGTGGGCCTTAGCCCAATACAG-A
1 ACAGTGTGGGCCTTAGCCCAATACAGTA
*
44663040 ATCAGTGTGGGCCTTAGCCCAATATAG-A
1 A-CAGTGTGGGCCTTAGCCCAATACAGTA
* * *
44663068 ATCAATGTGGGCCTTAACCTAATACAGTA
1 A-CAGTGTGGGCCTTAGCCCAATACAGTA
* * *
44663097 ATAGTGTGGGCATTAGCCCAATATAG-A
1 ACAGTGTGGGCCTTAGCCCAATACAGTA
*
44663124 ATCAGTGTGGGCCTTAGCCCAATACAATA
1 A-CAGTGTGGGCCTTAGCCCAATACAGTA
44663153 ACAGT
1 ACAGT
44663158 ACAGTGCAAT
Statistics
Matches: 151, Mismatches: 18, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
27 4 0.03
28 143 0.95
29 4 0.03
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.24
Consensus pattern (28 bp):
ACAGTGTGGGCCTTAGCCCAATACAGTA
Found at i:44663077 original size:84 final size:84
Alignment explanation
Indices: 44662958--44663147 Score: 301
Period size: 84 Copynumber: 2.3 Consensus size: 84
44662948 AGTGATAGTA
* * *
44662958 CAGTGTGGGCCTTAGCCCAATATAGTAACAGTGTGGGCTTTAGCCCAATACAGTAACAGTGTGGG
1 CAGTGTGGGCCTTAGCCCAATATAGTAACAATGTGGGCCTTAACCCAATACAGTAACAGTGTGGG
*
44663023 CCTTAGCCCAATACAGAAT
66 CATTAGCCCAATACAGAAT
* *
44663042 CAGTGTGGGCCTTAGCCCAATATAG-AATCAATGTGGGCCTTAACCTAATACAGTAATAGTGTGG
1 CAGTGTGGGCCTTAGCCCAATATAGTAA-CAATGTGGGCCTTAACCCAATACAGTAACAGTGTGG
*
44663106 GCATTAGCCCAATATAGAAT
65 GCATTAGCCCAATACAGAAT
44663126 CAGTGTGGGCCTTAGCCCAATA
1 CAGTGTGGGCCTTAGCCCAATA
44663148 CAATAACAGT
Statistics
Matches: 98, Mismatches: 7, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
83 2 0.02
84 96 0.98
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (84 bp):
CAGTGTGGGCCTTAGCCCAATATAGTAACAATGTGGGCCTTAACCCAATACAGTAACAGTGTGGG
CATTAGCCCAATACAGAAT
Found at i:44663290 original size:26 final size:27
Alignment explanation
Indices: 44663261--44663334 Score: 98
Period size: 26 Copynumber: 2.8 Consensus size: 27
44663251 ACACACCAAT
*
44663261 ATCGCAGCAAAGCTACCAGTAAT-AGC
1 ATCGCAGCAAAGCTGCCAGTAATCAGC
* *
44663287 ATCGCAGCAGAGCTGCCAGT-ATCAGT
1 ATCGCAGCAAAGCTGCCAGTAATCAGC
*
44663313 ATCGTAGCAAAGCTGCCAGTAA
1 ATCGCAGCAAAGCTGCCAGTAA
44663335 CTATATATGT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
25 2 0.05
26 38 0.93
27 1 0.02
ACGTcount: A:0.34, C:0.26, G:0.23, T:0.18
Consensus pattern (27 bp):
ATCGCAGCAAAGCTGCCAGTAATCAGC
Found at i:44663568 original size:27 final size:27
Alignment explanation
Indices: 44663538--44663624 Score: 79
Period size: 27 Copynumber: 3.3 Consensus size: 27
44663528 TAATCTTCTA
*
44663538 GGGGTATAAAGATCATTTTACCCTTAG
1 GGGGTATAAAGATAATTTTACCCTTAG
* * *
44663565 GGGGTATTATGGTAATTTTACCCTTA-
1 GGGGTATAAAGATAATTTTACCCTTAG
** *
44663591 GGGGTATTTCA-ATAATTTTACCCTTCG
1 GGGGTA-TAAAGATAATTTTACCCTTAG
*
44663618 AGGGTAT
1 GGGGTAT
44663625 TTTAGTACTT
Statistics
Matches: 49, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
26 20 0.41
27 29 0.59
ACGTcount: A:0.25, C:0.14, G:0.23, T:0.38
Consensus pattern (27 bp):
GGGGTATAAAGATAATTTTACCCTTAG
Found at i:44663718 original size:81 final size:81
Alignment explanation
Indices: 44663549--44663963 Score: 325
Period size: 81 Copynumber: 5.1 Consensus size: 81
44663539 GGGTATAAAG
* * * * * ** *
44663549 ATCATTTTACCCTTAGGGGGTATTAT-GGTAATTTTACCCTTAG-GGGTATTTCAATAATTTTAC
1 ATCATTTTACCCTTTGAGGGTATT-TCGATCATTTTACCCTTCGAGGGTATTTCGGTCATTTTAC
* *
44663612 CCTTCGAGGGTATTTTA
65 CCATCGAGGGTATTTCA
* * * *
44663629 GT-ACTTTTACCCTTTGAGGGTATTTCGATAATTTTA-CATGTCGAGGGTATTTTGGTCATTTTA
1 ATCA-TTTTACCCTTTGAGGGTATTTCGATCATTTTACCCT-TCGAGGGTATTTCGGTCATTTTA
** *
44663692 CCTTTCGGGGGTATTTCA
64 CCCATCGAGGGTATTTCA
* * *
44663710 ATCATTTTACCC-TTCAGGAGTATTTCGATCATTTTACCCTTC-AGGGGTATTTCAGTTATTTTA
1 ATCATTTTACCCTTTGAGG-GTATTTCGATCATTTTACCCTTCGA-GGGTATTTCGGTCATTTTA
* **
44663773 CCCATCGGGGGTATTTTG
64 CCCATCGAGGGTATTTCA
* * * * *
44663791 GTCATTTTA-CCTTTGAAGGGTATTT-TAGTCATTTTACCCTAT-GGGGGTATTTCGATCATTCT
1 ATCATTTTACCCTTTG-AGGGTATTTCGA-TCATTTTACCCT-TCGAGGGTATTTCGGTCATTTT
44663853 ACCCTAT-GAGGGTATTTCA
63 ACCC-ATCGAGGGTATTTCA
* * * *
44663872 ATCATTTTACCCTAT-AGAGGTATTTCGGTCATTTTACCCTAT-GGGGGTATTTCGGTCATTATA
1 ATCATTTTACCCTTTGAG-GGTATTTCGATCATTTTACCCT-TCGAGGGTATTTCGGTCATTTTA
*
44663935 CCCTAT-GAGGGTATTTCG
64 CCC-ATCGAGGGTATTTCA
*
44663953 GTCATTTTACC
1 ATCATTTTACC
44663964 TTATGGGGGT
Statistics
Matches: 275, Mismatches: 43, Indels: 33
0.78 0.12 0.09
Matches are distributed among these distances:
79 4 0.01
80 41 0.15
81 217 0.79
82 13 0.05
ACGTcount: A:0.21, C:0.17, G:0.20, T:0.42
Consensus pattern (81 bp):
ATCATTTTACCCTTTGAGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACC
CATCGAGGGTATTTCA
Found at i:44663825 original size:54 final size:53
Alignment explanation
Indices: 44663550--44663973 Score: 329
Period size: 54 Copynumber: 7.9 Consensus size: 53
44663540 GGTATAAAGA
* * * * * *
44663550 TCATTTTACCCTTAGGGGGTATTAT-GGTAATTTTACCCTTAGGGGTATTTCAA
1 TCATTTTACCCATCGGGGGTATT-TCGGTCATTTTACCTTTGGGGGTATTTCAG
* * * ** *
44663603 TAATTTTACCCTTCGAGGGTATTTTAGT-ACTTTTACCCTTTGAGGGTATTTC-G
1 TCATTTTACCCATCGGGGGTATTTCGGTCA-TTTTA-CCTTTGGGGGTATTTCAG
* *** * * *
44663656 ATAATTTTACATGTCGAGGGTATTTTGGTCATTTTACCTTTCGGGGGTATTTCAA
1 -TCATTTTACCCATCGGGGGTATTTCGGTCATTTTACCTTT-GGGGGTATTTCAG
* * * * **
44663711 TCATTTTACCCTTCAGGAGTATTTCGATCATTTTACCCTTCAGGGGTATTTCAG
1 TCATTTTACCCATCGGGGGTATTTCGGTCATTTTA-CCTTTGGGGGTATTTCAG
* * * *
44663765 TTATTTTACCCATCGGGGGTATTTTGGTCATTTTACCTTTGAAGGGTATTTTAG
1 TCATTTTACCCATCGGGGGTATTTCGGTCATTTTACCTTTG-GGGGTATTTCAG
* * * * *
44663819 TCATTTTACCCTAT-GGGGGTATTTCGATCATTCTACCCTATGAGGGTATTTCAA
1 TCATTTTACCC-ATCGGGGGTATTTCGGTCATTTTA-CCTTTGGGGGTATTTCAG
* * * *
44663873 TCATTTTACCCTAT-AGAGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGG
1 TCATTTTACCC-ATCGGGGGTATTTCGGTCATTTTA-CCTTTGGGGGTATTTCAG
* *
44663927 TCATTATACCCTAT-GAGGGTATTTCGGTCATTTTACCTTATGGGGGT
1 TCATTTTACCC-ATCGGGGGTATTTCGGTCATTTTACCTT-TGGGGGT
44663974 CTCGGTGCAG
Statistics
Matches: 304, Mismatches: 55, Indels: 23
0.80 0.14 0.06
Matches are distributed among these distances:
52 2 0.01
53 39 0.13
54 251 0.83
55 12 0.04
ACGTcount: A:0.20, C:0.17, G:0.21, T:0.42
Consensus pattern (53 bp):
TCATTTTACCCATCGGGGGTATTTCGGTCATTTTACCTTTGGGGGTATTTCAG
Found at i:44663968 original size:27 final size:27
Alignment explanation
Indices: 44663550--44663973 Score: 266
Period size: 27 Copynumber: 15.7 Consensus size: 27
44663540 GGTATAAAGA
*
44663550 TCATTTTACCCTTA-GGGGGTATTAT-GG
1 TCATTTTA-CCTTATGAGGGTATT-TCGG
* **
44663577 TAATTTTACCCTTA-G-GGGTATTTCAA
1 TCATTTTA-CCTTATGAGGGTATTTCGG
* * **
44663603 TAATTTTACCCTT-CGAGGGTATTTTAG
1 TCATTTTA-CCTTATGAGGGTATTTCGG
*
44663630 T-ACTTTTACCCTT-TGAGGGTATTTCGA
1 TCA-TTTTA-CCTTATGAGGGTATTTCGG
* * * *
44663657 TAATTTTACATGT-CGAGGGTATTTTGG
1 TCATTTTACCT-TATGAGGGTATTTCGG
* **
44663684 TCATTTTACCTT-TCGGGGGTATTTCAA
1 TCATTTTACCTTAT-GAGGGTATTTCGG
* * *
44663711 TCATTTTACCCT-TCAGGAGTATTTCGA
1 TCATTTTACCTTATGAGG-GTATTTCGG
*
44663738 TCATTTTACCCTTCA-G-GGGTATTTCAG
1 TCATTTTA-CCTT-ATGAGGGTATTTCGG
* * * *
44663765 TTATTTTACC-CATCGGGGGTATTTTGG
1 TCATTTTACCTTAT-GAGGGTATTTCGG
**
44663792 TCATTTTACCTT-TGAAGGGTATTTTAG
1 TCATTTTACCTTATG-AGGGTATTTCGG
* * *
44663819 TCATTTTACCCTATGGGGGTATTTCGA
1 TCATTTTACCTTATGAGGGTATTTCGG
* * **
44663846 TCATTCTACCCTATGAGGGTATTTCAA
1 TCATTTTACCTTATGAGGGTATTTCGG
*
44663873 TCATTTTACCCTAT-AGAGGTATTTCGG
1 TCATTTTACCTTATGAG-GGTATTTCGG
* *
44663900 TCATTTTACCCTATGGGGGTATTTCGG
1 TCATTTTACCTTATGAGGGTATTTCGG
* *
44663927 TCATTATACCCTATGAGGGTATTTCGG
1 TCATTTTACCTTATGAGGGTATTTCGG
*
44663954 TCATTTTACCTTATGGGGGT
1 TCATTTTACCTTATGAGGGT
44663974 CTCGGTGCAG
Statistics
Matches: 325, Mismatches: 53, Indels: 38
0.78 0.13 0.09
Matches are distributed among these distances:
24 1 0.00
25 1 0.00
26 33 0.10
27 281 0.86
28 9 0.03
ACGTcount: A:0.20, C:0.17, G:0.21, T:0.42
Consensus pattern (27 bp):
TCATTTTACCTTATGAGGGTATTTCGG
Found at i:44666798 original size:50 final size:49
Alignment explanation
Indices: 44666730--44666859 Score: 143
Period size: 50 Copynumber: 2.6 Consensus size: 49
44666720 AGGTCCCATA
** *
44666730 TAAGACCATGTCTGGGACATGGTGTTGGCACCGAGACGAGAGGTCCCCCG
1 TAAGACCATGTCTGGGACATGGT-TTGGCACCGAGACGAGAACTCCCACG
* * * * * * *
44666780 TAAGACCATGTCTAGGACATGGCATAGGCCCCGATATGAGAACTCCCATG
1 TAAGACCATGTCTGGGACATGG-TTTGGCACCGAGACGAGAACTCCCACG
44666830 TAAGACCATGTCTGGGACATGGCTTTGGCA
1 TAAGACCATGTCTGGGACATGG-TTTGGCA
44666860 TGTTATTATT
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
50 65 1.00
ACGTcount: A:0.25, C:0.25, G:0.29, T:0.21
Consensus pattern (49 bp):
TAAGACCATGTCTGGGACATGGTTTGGCACCGAGACGAGAACTCCCACG
Found at i:44674269 original size:50 final size:50
Alignment explanation
Indices: 44674164--44674355 Score: 204
Period size: 50 Copynumber: 3.7 Consensus size: 50
44674154 GGAATGAGAC
* ***
44674164 CCCATGTAAGACCATGTCTGGGACATGGCATTGGAATTATTAAGGTTATGAGAGGT
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGG---CACCGA-G--ATGAGAGGT
44674220 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGT
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGT
** * * * **
44674270 CCCCCGTAAGACCATGTCTAGGACATGGCATGGGCACCGATATGAGAACT
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGT
* * *
44674320 CCCATGTAAGACCATATCTGGGATATGACATTGGCA
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
44674356 GTACAGGAAA
Statistics
Matches: 118, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
50 81 0.69
52 1 0.01
53 2 0.02
56 34 0.29
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (50 bp):
CCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGT
Found at i:44698200 original size:22 final size:21
Alignment explanation
Indices: 44698167--44698211 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
44698157 ACAAAAAAAA
44698167 AACAGAAAAAATAAATAAAGC
1 AACAGAAAAAATAAATAAAGC
* *
44698188 AACATAAATAAATAATTAAAGC
1 AACAGAAA-AAATAAATAAAGC
44698210 AA
1 AA
44698212 AACTTGTCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.69, C:0.09, G:0.07, T:0.16
Consensus pattern (21 bp):
AACAGAAAAAATAAATAAAGC
Found at i:44699038 original size:46 final size:46
Alignment explanation
Indices: 44698988--44699091 Score: 131
Period size: 46 Copynumber: 2.3 Consensus size: 46
44698978 TTTAATGGAA
* *
44698988 TAATAGAGAATTAATTATT-GTGTTAAATAATTATATGAGATTGCTT
1 TAATAGAGAATTAATTATTAG-ATTAAATAATTATATAAGATTGCTT
* * *
44699034 TAATAGAGAATTAGTTATTAGATTAAATAATTATATAAGCTTGTTT
1 TAATAGAGAATTAATTATTAGATTAAATAATTATATAAGATTGCTT
*
44699080 TAATTGA-AATTA
1 TAATAGAGAATTA
44699092 CAATTGATGT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
45 5 0.10
46 45 0.88
47 1 0.02
ACGTcount: A:0.41, C:0.02, G:0.13, T:0.43
Consensus pattern (46 bp):
TAATAGAGAATTAATTATTAGATTAAATAATTATATAAGATTGCTT
Found at i:44699827 original size:18 final size:18
Alignment explanation
Indices: 44699800--44699834 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
44699790 TAAACAAGTG
*
44699800 AGGTAACTTTTGAATTAC
1 AGGTAACTTTTCAATTAC
*
44699818 AGGTATCTTTTCAATTA
1 AGGTAACTTTTCAATTA
44699835 TAACTATCAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.11, G:0.14, T:0.43
Consensus pattern (18 bp):
AGGTAACTTTTCAATTAC
Found at i:44702170 original size:6 final size:6
Alignment explanation
Indices: 44702136--44702166 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
44702126 TCTAATAAAT
44702136 TATTAA TATTAA TATTAA TATTAA TA-TAA TA
1 TATTAA TATTAA TATTAA TATTAA TATTAA TA
44702167 ATAAAAATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
TATTAA
Found at i:44705977 original size:66 final size:66
Alignment explanation
Indices: 44705907--44706114 Score: 169
Period size: 66 Copynumber: 3.2 Consensus size: 66
44705897 ATTTGAGTAA
44705907 GCTGATTTAAGGTCGCACTACAAACAACTCGTTGATTTAAGGTCGCAGTTGATATTATTAAGGTT
1 GCTGATTTAAGGTCGCACTACAAACAACTCGTTGATTTAAGGTCGCAGTTGATATTATTAAGGTT
44705972 C
66 C
** * ** ** * * * *
44705973 GCTGATTTAA--TATCACAACCTA-ATTTCATTTGAATTAAGATCATGAACAATT--T-TTATT-
1 GCTGATTTAAGGTCGCACTACAAACAACTC-GTTGATTTAAGGTC--G--CAGTTGATATTATTA
* **
44706031 TGAGTAA
61 AG-GTTC
*
44706038 GCTGATTTAAGGTCGCACTACAAACAACTCGTTGATTTAAGGTCGCAGTTGATATCATTAAGGTT
1 GCTGATTTAAGGTCGCACTACAAACAACTCGTTGATTTAAGGTCGCAGTTGATATTATTAAGGTT
44706103 C
66 C
*
44706104 ACTGATTTAAG
1 GCTGATTTAAG
44706115 ATCACAACCT
Statistics
Matches: 99, Mismatches: 30, Indels: 26
0.64 0.19 0.17
Matches are distributed among these distances:
63 7 0.07
64 19 0.19
65 19 0.19
66 28 0.28
67 19 0.19
68 7 0.07
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (66 bp):
GCTGATTTAAGGTCGCACTACAAACAACTCGTTGATTTAAGGTCGCAGTTGATATTATTAAGGTT
C
Found at i:44706080 original size:131 final size:130
Alignment explanation
Indices: 44705846--44706312 Score: 622
Period size: 131 Copynumber: 3.6 Consensus size: 130
44705836 CTATCATTCA
* * * *
44705846 ATTTATGATCGCAACCTAATTTCATTTGAATTAAGATCATGAACAATTTTTATTTGAGTAAGCTG
1 ATTTAAGATCACAACCTAAGTTCA-TTGAATTAAGATCATGAACAATTTTTATTTGAGTAAGCTA
*
44705911 ATTTAAGGTCGCACTACAAACAACTCGTTGATTTAAGGTCGCAGTTGATATTATTAAGGTTCGCT
65 ATTTAAGATCGCACTACAAACAACTCGTTGATTTAAGGTCGCAGTTGATATTATTAAGGTTCGCT
44705976 G
130 G
* * *
44705977 ATTTAATATCACAACCTAATTTCATTTGAATTAAGATCATGAACAATTTTTATTTGAGTAAGCTG
1 ATTTAAGATCACAACCTAAGTTCA-TTGAATTAAGATCATGAACAATTTTTATTTGAGTAAGCTA
* * *
44706042 ATTTAAGGTCGCACTACAAACAACTCGTTGATTTAAGGTCGCAGTTGATATCATTAAGGTTCACT
65 ATTTAAGATCGCACTACAAACAACTCGTTGATTTAAGGTCGCAGTTGATATTATTAAGGTTCGCT
44706107 G
130 G
* * *
44706108 ATTTAAGATCACAACCTAAGTTCATTCAATTTAAGATCATGAA-AAATTTTATTTGAGTTAGCTA
1 ATTTAAGATCACAACCTAAGTTCATTGAA-TTAAGATCATGAACAATTTTTATTTGAGTAAGCTA
* * * * * * * **
44706172 ATTTATGATCGCAACTCCGAACAGCTCACTT-TTTTAAGATCATAGTTGATATTATTAAGGTTCG
65 ATTTAAGATCGC-ACTACAAACAACTC-GTTGATTTAAGGTCGCAGTTGATATTATTAAGGTTCG
44706236 CTG
128 CTG
*
44706239 ATTTAAGATCACAACCTAAGTTC---G-ATATAAGATCATGAACAATTTTTATTTGAGTTAGCTA
1 ATTTAAGATCACAACCTAAGTTCATTGAAT-TAAGATCATGAACAATTTTTATTTGAGTAAGCTA
44706300 ATTTAAGATCGCA
65 ATTTAAGATCGCA
44706313 ACTCTGAAAA
Statistics
Matches: 305, Mismatches: 26, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
126 1 0.00
127 14 0.05
128 31 0.10
130 32 0.10
131 225 0.74
132 2 0.01
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (130 bp):
ATTTAAGATCACAACCTAAGTTCATTGAATTAAGATCATGAACAATTTTTATTTGAGTAAGCTAA
TTTAAGATCGCACTACAAACAACTCGTTGATTTAAGGTCGCAGTTGATATTATTAAGGTTCGCTG
Found at i:44706579 original size:132 final size:132
Alignment explanation
Indices: 44706331--44707071 Score: 769
Period size: 132 Copynumber: 5.6 Consensus size: 132
44706321 AAGCTTGCTT
** * * * *
44706331 ATTTAAGATTGCAACTTAAATTCATTGGATTTAAGATCATGAACAATTTTCATTTGAGTTA-CTT
1 ATTTAAGATCACAACCTAAGTTCATTCGATTTAAGATCATGAACAATTTTTATTTGAGTTAGC-T
* ** * *
44706395 GATTTAATA-T-CATAGCTCAAAACAACTCGTTGATTTAAAATCGCAGCTGATATTATTAAAGTT
65 GATTTAAGATTGCA-A-CTCTGAACAACTCGTTGATTTAAGATCGCAGATGATATTATTAAAGTT
44706458 CGCTG
128 CGCTG
* * *
44706463 ATTTAAGATCATAACCTAAGTTCATTCGATTTAAGATCATTAACAATTTTTATTTGAGTTAGTTG
1 ATTTAAGATCACAACCTAAGTTCATTCGATTTAAGATCATGAACAATTTTTATTTGAGTTAGCTG
* * * * * * *
44706528 ATTTCATATTGCAACTCTGAACAGCTCATTGATTTAAGATCGTAGAAGATATTATT-AAGCTTCA
66 ATTTAAGATTGCAACTCTGAACAACTCGTTGATTTAAGATCGCAGATGATATTATTAAAG-TTCG
*
44706592 CTT
130 CTG
** *
44706595 ATTTAAGATCACAACCTAAGTTCATTTTATTTAAGATCATGAACAATTTTTATTTTAGTTAGCTG
1 ATTTAAGATCACAACCTAAGTTCATTCGATTTAAGATCATGAACAATTTTTATTTGAGTTAGCTG
* * * * * * * *
44706660 ATTTAAGATTGCAACTATGGATAGCTCGTTGATTTAAGATTGCAGTTGATATTATTAATGTTCAC
66 ATTTAAGATTGCAACTCTGAACAACTCGTTGATTTAAGATCGCAGATGATATTATTAAAGTTCGC
44706725 TG
131 TG
* * * * * * *
44706727 ATTTAAGATCGCAACCTAAGTTCATTCGATTTAAGATTATTAATAATTTTTATTTGTGCTACCTG
1 ATTTAAGATCACAACCTAAGTTCATTCGATTTAAGATCATGAACAATTTTTATTTGAGTTAGCTG
* * * * * *
44706792 ATTTAAAATTGTAACTCTGAATAACTCATTGATTTAAGATCTCA-ACTGATATTATTAAGGTAT-
66 ATTTAAGATTGCAACTCTGAACAACTCGTTGATTTAAGATCGCAGA-TGATATTATTAAAGT-TC
*
44706855 GCTA
129 GCTG
* * * *
44706859 ATTTAAGATCGCAACCTAAGTTAATTC-ACTTTAAAATCAAGAACAATTTTTATTTGAGTTAGCT
1 ATTTAAGATCACAACCTAAGTTCATTCGA-TTTAAGATCATGAACAATTTTTATTTGAGTTAGCT
* * * * * *
44706923 GATTTAAGATCGCAACTCCGAACAACTCGCTGATTTAAGATCACA-ACTGATATTATTTAGGTTC
65 GATTTAAGATTGCAACTCTGAACAACTCGTTGATTTAAGATCGCAGA-TGATATTATTAAAGTTC
*
44706987 GTTG
129 GCTG
** * * * *
44706991 ATTTATTATCACAACCTAAGTTCATTCAATTTAAGATCATGAACAAATTTTATTTGAGTTAGTTA
1 ATTTAAGATCACAACCTAAGTTCATTCGATTTAAGATCATGAACAATTTTTATTTGAGTTAGCTG
*
44707056 ATTTAAGATCGCAACT
66 ATTTAAGATTGCAACT
44707072 GATATTATTA
Statistics
Matches: 510, Mismatches: 89, Indels: 20
0.82 0.14 0.03
Matches are distributed among these distances:
131 5 0.01
132 497 0.97
133 6 0.01
134 2 0.00
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.39
Consensus pattern (132 bp):
ATTTAAGATCACAACCTAAGTTCATTCGATTTAAGATCATGAACAATTTTTATTTGAGTTAGCTG
ATTTAAGATTGCAACTCTGAACAACTCGTTGATTTAAGATCGCAGATGATATTATTAAAGTTCGC
TG
Found at i:44706664 original size:65 final size:65
Alignment explanation
Indices: 44706447--44707070 Score: 219
Period size: 65 Copynumber: 9.5 Consensus size: 65
44706437 GCAGCTGATA
* * * * *
44706447 TTATTAAAGTTCGCTGATTTAAGATCATAACCTAAGTTCATTCGATTTAAGATCATTAACAATTT
1 TTATTTAAGTTAGCTGATTTAAGATCACAACCTAAGTTCATTTGATTTAAGATCATGAACAATTT
* * * * ** * *
44706512 TTATTTGAGTTAGTTGATTTCATATTGCAACTCTGAACAGCTCA-TTGATTTAAGATCGTAGAA-
1 TTATTTAAGTTAGCTGATTTAAGATCACAAC-CT--A-AGTTCATTTGATTTAAGATCAT-GAAC
* *
44706575 GA-TA
61 AATTT
* *
44706579 TTA-TTAAGCTTCA-CTTATTTAAGATCACAACCTAAGTTCATTTTATTTAAGATCATGAACAAT
1 TTATTTAAG-TT-AGCTGATTTAAGATCACAACCTAAGTTCATTTGATTTAAGATCATGAACAAT
44706642 TT
64 TT
* ** * * *
44706644 TTATTTTAGTTAGCTGATTTAAGATTGCAACTATGGATAGCTC-GTTGATTTAAGAT--TG--CA
1 TTATTTAAGTTAGCTGATTTAAGATCACAAC-CT--A-AGTTCATTTGATTTAAGATCATGAACA
*
44706704 GTTGAT
62 ATT--T
* * * * *
44706710 ATTA-TTAATGTTCA-CTGATTTAAGATCGCAACCTAAGTTCATTCGATTTAAGATTATTAATAA
1 -TTATTTAA-GTT-AGCTGATTTAAGATCACAACCTAAGTTCATTTGATTTAAGATCATGAACAA
44706773 TTT
63 TTT
** * * * *** *
44706776 TTATTTGTGCTACCTGATTTAAAATTGTAACTCTGAA-TAACTCA-TTGATTTAAGATC-TCAAC
1 TTATTTAAGTTAGCTGATTTAAGATCACAAC-CT-AAGT---TCATTTGATTTAAGATCATGAAC
* *
44706838 TGA-TA
61 -AATTT
* * * * * * *
44706843 TTA-TTAAGGTATGCTAATTTAAGATCGCAACCTAAGTT-AATTCACTTTAAAATCAAGAACAAT
1 TTATTTAAGTTA-GCTGATTTAAGATCACAACCTAAGTTCATTTGA-TTTAAGATCATGAACAAT
44706906 TT
64 TT
* * * ** ** *
44706908 TTATTTGAGTTAGCTGATTTAAGATCGCAACTCCGAACAACTC-GCTGATTTAAGATCA-CAACT
1 TTATTTAAGTTAGCTGATTTAAGATCACAA--CC-TA-AGTTCATTTGATTTAAGATCATGAAC-
* *
44706971 GA-TA
61 AATTT
* * * ** ** *
44706975 TTATTTAGGTTCGTTGATTTATTATCACAACCTAAGTTCATTCAATTTAAGATCATGAACAAATT
1 TTATTTAAGTTAGCTGATTTAAGATCACAACCTAAGTTCATTTGATTTAAGATCATGAACAATTT
* * * *
44707040 TTATTTGAGTTAGTTAATTTAAGATCGCAAC
1 TTATTTAAGTTAGCTGATTTAAGATCACAAC
44707071 TGATATTATT
Statistics
Matches: 401, Mismatches: 108, Indels: 100
0.66 0.18 0.16
Matches are distributed among these distances:
62 1 0.00
63 19 0.05
64 55 0.14
65 119 0.30
66 41 0.10
67 93 0.23
68 55 0.14
69 18 0.04
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.39
Consensus pattern (65 bp):
TTATTTAAGTTAGCTGATTTAAGATCACAACCTAAGTTCATTTGATTTAAGATCATGAACAATTT
Found at i:44707063 original size:396 final size:395
Alignment explanation
Indices: 44706331--44707071 Score: 941
Period size: 396 Copynumber: 1.9 Consensus size: 395
44706321 AAGCTTGCTT
* * * * *
44706331 ATTTAAGATTGCAACTTAAATTCATTGGATTTAAGATCATGAACAATTTTCATTTGAGTTACTTG
1 ATTTAAGATCGCAACCTAAATTCATTCGATTTAAGATCATGAACAATTTTCATTTGAGCTACCTG
* * * *
44706396 ATTTAATATCATAGCTCAAAACAACTCGTTGATTTAAAATCGCAGCTGATATTATTAAAGTTCGC
66 ATTTAAAATCATAACTCAAAACAACTCATTGATTTAAAATCGCAACTGATATTATTAAAGTTCGC
* * * * ** *
44706461 TGATTTAAGATCATAACCTAAGTTCATTCGATTTAAGATCATTAACAATTTTTATTTGAGTTAGT
131 TAATTTAAGATCACAACCTAAGTTAATTCGATTTAAAATCAAGAACAATTTTTATTTGAGTTAGC
* * * * * * *
44706526 TGATTTCATATTGCAACTCTGAACAGCTCATTGATTTAAGATCGTAGAAGATATTATTAAGCTTC
196 TGATTTAAGATCGCAACTCCGAACAACTCACTGATTTAAGATCG-ACAAGATATTATTAAGCTTC
** * *
44706591 ACTTATTTAAGATCACAACCTAAGTTCATTTTATTTAAGATCATGAACAATTTTTATTTTAGTTA
260 ACTTATTTAAGATCACAACCTAAGTTCATTCAATTTAAGATCATGAACAAATTTTATTTGAGTTA
* *
44706656 GCTGATTTAAGATTGCAACTATGGATAGCTCGTTGATTTAAGATTGCAGTTGATATTATTAATGT
325 GCTAATTTAAGATCGCAACTATGGATAGCTCGTTGATTTAAGATTGCAGTTGATATTATTAATGT
44706721 TCACTG
390 TCACTG
* * * * * *
44706727 ATTTAAGATCGCAACCTAAGTTCATTCGATTTAAGATTATTAATAATTTTTATTTGTGCTACCTG
1 ATTTAAGATCGCAACCTAAATTCATTCGATTTAAGATCATGAACAATTTTCATTTGAGCTACCTG
** ** * * * *
44706792 ATTTAAAATTGTAACTCTGAATAACTCATTGATTTAAGATCTCAACTGATATTATTAAGGTAT-G
66 ATTTAAAATCATAACTCAAAACAACTCATTGATTTAAAATCGCAACTGATATTATTAAAGT-TCG
*
44706856 CTAATTTAAGATCGCAACCTAAGTTAATTC-ACTTTAAAATCAAGAACAATTTTTATTTGAGTTA
130 CTAATTTAAGATCACAACCTAAGTTAATTCGA-TTTAAAATCAAGAACAATTTTTATTTGAGTTA
* * *
44706920 GCTGATTTAAGATCGCAACTCCGAACAACTCGCTGATTTAAGATC-ACAACTGATATTATTTAGG
194 GCTGATTTAAGATCGCAACTCCGAACAACTCACTGATTTAAGATCGACAA--GATATTATTAAGC
* **
44706984 TTC-GTTGATTTATTATCACAACCTAAGTTCATTCAATTTAAGATCATGAACAAATTTTATTTGA
257 TTCACTT-ATTTAAGATCACAACCTAAGTTCATTCAATTTAAGATCATGAACAAATTTTATTTGA
*
44707048 GTTAGTTAATTTAAGATCGCAACT
321 GTTAGCTAATTTAAGATCGCAACT
44707072 GATATTATTA
Statistics
Matches: 289, Mismatches: 51, Indels: 10
0.83 0.15 0.03
Matches are distributed among these distances:
394 3 0.01
395 3 0.01
396 282 0.98
397 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.39
Consensus pattern (395 bp):
ATTTAAGATCGCAACCTAAATTCATTCGATTTAAGATCATGAACAATTTTCATTTGAGCTACCTG
ATTTAAAATCATAACTCAAAACAACTCATTGATTTAAAATCGCAACTGATATTATTAAAGTTCGC
TAATTTAAGATCACAACCTAAGTTAATTCGATTTAAAATCAAGAACAATTTTTATTTGAGTTAGC
TGATTTAAGATCGCAACTCCGAACAACTCACTGATTTAAGATCGACAAGATATTATTAAGCTTCA
CTTATTTAAGATCACAACCTAAGTTCATTCAATTTAAGATCATGAACAAATTTTATTTGAGTTAG
CTAATTTAAGATCGCAACTATGGATAGCTCGTTGATTTAAGATTGCAGTTGATATTATTAATGTT
CACTG
Found at i:44707126 original size:365 final size:365
Alignment explanation
Indices: 44706691--44707435 Score: 949
Period size: 365 Copynumber: 2.0 Consensus size: 365
44706681 TAGCTCGTTG
* ** *
44706691 ATTTAAGATTGCAGTTGATATTATTAATGTTCACTGATTTAAGATCGCAACCTAAGTTCATTCGA
1 ATTTAAGATCGCAACTGATATTATTAAGGTTCACTGATTTAAGATCGCAACCTAAGTTCATTCGA
** * * ** *
44706756 TTTAAGATTATTAATAATTTTTATTTGTGCTACCTGATTTAAAATTGTAAC-TCTGAATAACTCA
66 TTTAAGATTACGAACAATTTTTATTTGAGCTACCTGATTTAAAATCATAACTTC-GAACAACTCA
* * * * *
44706820 TTGATTTAAGATCT-CAACTGATATTATTAAGGTATGCTAATTTAAGATCGCAACCTAAGTTAAT
130 CTAATTTAAGAT-TACAACTAAAATTATTAAGGTATGCTAATTTAAGATCACAACCTAAGTTAAT
*
44706884 TC-ACTTTAAAATCAAGAACAATTTTTATTTGAGTTAGCTGATTTAAGATCGCAACTCCGAACAA
194 TCGA-TTTAAAATCAAGAACAATTTTTATTTGAGTTAGCTGATTTAAGATAGCAACTCCGAACAA
* * ** **
44706948 CTCGCTGATTTAAGATCACAACTGATATTATTTAGGTTCGTTGATTTATTATCACAACCTAAGTT
258 CTCACTGATTTAAGATCACAACTGATATTATTAACATTCGTTGATTTAAGATCACAACCTAAGTT
44707013 CATTCAATTTAAGATCATGAACAAATTTT-ATTTGAGTTAGTTA
323 CATTCAATTTAAGATCATGAAC-AATTTTCATTTGAGTTAGTTA
* * * *
44707056 ATTTAAGATCGCAACTGATATTATTAAGGTTCACTTATTTAATATTGCAACCTAAGTTCATTGGA
1 ATTTAAGATCGCAACTGATATTATTAAGGTTCACTGATTTAAGATCGCAACCTAAGTTCATTCGA
* * * * *
44707121 TTTAAGGTTACGAACAATTTTTATTTGAGTTACCTGATTTAATATCATAGCTTCGAACAACTCGC
66 TTTAAGATTACGAACAATTTTTATTTGAGCTACCTGATTTAAAATCATAACTTCGAACAACTCAC
* * * * * * *
44707186 TAATTTAATATTACAGCTAAAATTATTAAGGTTTGTTGATTTAAGATCACAACCTAATTTCATTC
131 TAATTTAAGATTACAACTAAAATTATTAAGGTATGCTAATTTAAGATCACAACCTAAGTTAATTC
* * * * * *
44707251 GATTTAAGATCATGAACAATTTTTATTTGAGTTAGTTGATTTAAGATAGCAACTCTGAATACCTC
196 GATTTAAAATCAAGAACAATTTTTATTTGAGTTAGCTGATTTAAGATAGCAACTCCGAACAACTC
* * * * *
44707316 ATTGATTTAAGATCACAAGTGATATTATTAACATTTGTTGATTTAAGATCGCAGCCTAAGTTCAT
261 ACTGATTTAAGATCACAACTGATATTATTAACATTCGTTGATTTAAGATCACAACCTAAGTTCAT
* *
44707381 TCGATTTAAGATCATGAACAATTTTCATTTGAGTTAGTTG
326 TCAATTTAAGATCATGAACAATTTTCATTTGAGTTAGTTA
*
44707421 ATTTAATATCGCAAC
1 ATTTAAGATCGCAAC
44707436 CTCGAAGAAC
Statistics
Matches: 323, Mismatches: 53, Indels: 8
0.84 0.14 0.02
Matches are distributed among these distances:
364 7 0.02
365 313 0.97
366 3 0.01
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.39
Consensus pattern (365 bp):
ATTTAAGATCGCAACTGATATTATTAAGGTTCACTGATTTAAGATCGCAACCTAAGTTCATTCGA
TTTAAGATTACGAACAATTTTTATTTGAGCTACCTGATTTAAAATCATAACTTCGAACAACTCAC
TAATTTAAGATTACAACTAAAATTATTAAGGTATGCTAATTTAAGATCACAACCTAAGTTAATTC
GATTTAAAATCAAGAACAATTTTTATTTGAGTTAGCTGATTTAAGATAGCAACTCCGAACAACTC
ACTGATTTAAGATCACAACTGATATTATTAACATTCGTTGATTTAAGATCACAACCTAAGTTCAT
TCAATTTAAGATCATGAACAATTTTCATTTGAGTTAGTTA
Found at i:44707126 original size:497 final size:494
Alignment explanation
Indices: 44706557--44708322 Score: 1597
Period size: 497 Copynumber: 3.5 Consensus size: 494
44706547 AACAGCTCAT
* * * *
44706557 TGATTTAAGATCGTAGA-AGATATTATTAAGCTTCACTTATTTAAGATCACAACCTAAGTTCATT
1 TGATTTAAGATCGCA-ACTGATATTATTAAGGTTCACTGATTTAAGATCACAACCTAAGTTCATT
** * *
44706621 TTATTTAAGATCATGAACAATTTTTATTTTAGTTAGCTGATTTAAGATTGCAACTATGGATAGCT
65 CGATTTAAGATCATGAACAATTTTTATTTGAGTTAGCTGATTTAAGATTGCAACTATGAATAGCT
** * *
44706686 CGTTGATTTAAGATTGCAGTTGATATTATTAATGTTCACTGATTTAAGATCGCAACCTAAGTTCA
130 CGTTGATTTAAGATTGCAACTGATATTATTAAGGTTCGCTGATTTAAGATCGCAACCTAAGTTCA
* * * * * * * *
44706751 TTCGATTTAAGATTATTAATAATTTTTATTTGTGCTACCTGATTTAAAATTGTAACTCTGAATAA
195 TTCGATTTAAGATCATGAACAATTTTTATTTGAGTTAGCTGATTTAAAATAGCAACTCTGAATAA
* * * *
44706816 CTCATTGATTTAAGATCTCAACTGATATTATTAAGGTATGCTAATTTAAGATCGCAACCTAAGTT
260 CTCATTGATTTAAGATCACAACTGATATTATTAAGGTTTGTTGATTTAAGATCGCAACCTAAGTT
* * *
44706881 AATTCACTTTAAAATCAAGAACAATTTTTATTTGAGTTAGCTGATTTAAGATCGCAACTCCGAAC
325 CATTCA-TTTAAGATCATGAACAATTTTTATTTGAGTTAGCTGATTTAAGATCGCAACTCCGAAC
* * *
44706946 AACTCGCTGATTTAAGATCACAACTGATATTATTTAGGTTCGTTGATTTATTATCACAACCTAAG
389 AACTCGCTGATTTAAGATCGCAACTGATATTATTTAGGTTCGATGATCTATTATC-CAACCTAAG
*
44707011 TTCATTCAATTTAAGATCATGAACAAATTTTATTTGAGTTAGT
453 TTCATTCAATTTAAGATCATGAAC-AATTTTATTTGAGTTAGC
* * * ** *
44707054 TAATTTAAGATCGCAACTGATATTATTAAGGTTCACTTATTTAATATTGCAACCTAAGTTCATTG
1 TGATTTAAGATCGCAACTGATATTATTAAGGTTCACTGATTTAAGATCACAACCTAAGTTCATTC
* * * * * * *
44707119 GATTTAAGGTTACGAACAATTTTTATTTGAGTTACCTGATTTAATA-T-CATAGCT-TCGAACAA
66 GATTTAAGATCATGAACAATTTTTATTTGAGTTAGCTGATTTAAGATTGCA-A-CTAT-GAATAG
* * * * * * * * * * *
44707181 CTCGCTAATTTAATATTACAGCTAAAATTATTAAGGTTTGTTGATTTAAGATCACAACCTAATTT
128 CTCGTTGATTTAAGATTGCAACTGATATTATTAAGGTTCGCTGATTTAAGATCGCAACCTAAGTT
* *
44707246 CATTCGATTTAAGATCATGAACAATTTTTATTTGAGTTAGTTGATTTAAGATAGCAACTCTGAAT
193 CATTCGATTTAAGATCATGAACAATTTTTATTTGAGTTAGCTGATTTAAAATAGCAACTCTGAAT
* * ** *
44707311 ACCTCATTGATTTAAGATCACAAGTGATATTATTAACATTTGTTGATTTAAGATCGCAGCCTAAG
258 AACTCATTGATTTAAGATCACAACTGATATTATTAAGGTTTGTTGATTTAAGATCGCAACCTAAG
* * *
44707376 TTCATTCGATTTAAGATCATGAACAATTTTCATTTGAGTTAGTTGATTTAATATCGCAAC-CTCG
323 TTCATTC-ATTTAAGATCATGAACAATTTTTATTTGAGTTAGCTGATTTAAGATCGCAACTC-CG
* * * * * * *
44707440 AAGAACTCGCTGATTTAATATCGCAATTGATTTTATTAAGGTTCGCTGATCTAATATCGCAACCT
386 AACAACTCGCTGATTTAAGATCGCAACTGATATTATTTAGGTTCGATGATCTATTATC-CAACCT
* * * *
44707505 AATTTCATTCGATTTGAGATCATGAATAATTTTTATTTGAGTTAGC
450 AAGTTCATTCAATTTAAGATCATGAACAA-TTTTATTTGAGTTAGC
** * * *
44707551 TGATTTAAGATCGCACTACAAACAACTCGTTGATTTAAGGTCGCAGTTGATATTATTAAGGTTCG
1 TGATTTAAGATCGCA--AC---TGA-T-ATT-A-TTAAGGT-TCA-CTG--A-T-TTAA------
* * * * *
44707616 CTGATTTAATATCACAACCTAAGTTCATTCAATTTAAGACCATCAACTATTTTTATTTGAGTTAG
45 --GA--T-C----ACAACCTAAGTTCATTCGATTTAAGATCATGAACAATTTTTATTTGAGTTAG
* *** * * *
44707681 CTGATTTAAAATTGCAACTCCAAAGAACTCATTGATTTAAGATCT-CAACTGATATTATTAAGGT
101 CTGATTTAAGATTGCAACTATGAATAGCTCGTTGATTTAAGAT-TGCAACTGATATTATTAAGGT
* * * *
44707745 TCTCTGATTTAAAATCGCAACATAAGTTCATTCAATTTAAGATCATGAACAATTTTTATTTGAGT
165 TCGCTGATTTAAGATCGCAACCTAAGTTCATTCGATTTAAGATCATGAACAATTTTTATTTGAGT
* * * * * **
44707810 TAGCTAATTTAAGATCA-CAACACTGAACAATTCACTT-ATTTAAGATCACATTTGATATTATTA
230 TAGCTGATTTAAAAT-AGCAACTCTGAATAACTCA-TTGATTTAAGATCACAACTGATATTATTA
* * *
44707873 AGGTTTGTTGATTTAATATCACAACCTAAGTTCATTGGATTTAAGATCATGAACAATTTTTATTT
293 AGGTTTGTTGATTTAAGATCGCAACCTAAGTTCATT-CATTTAAGATCATGAACAATTTTTATTT
* ** *
44707938 GAG-TAGCTAATTTAAGATCGCAACTCCGAACAGTTCGCTGATTTAAGATCGCAACCTAAGTTAT
357 GAGTTAGCTGATTTAAGATCGCAACTCCGAACAACTCGCTGATTTAAGATCGCAA-CT--GATA-
* * * * ** ** * ** * *
44708002 TTGGATTTAAGATC-ATGAACAATT-T-TTATTTGAGTT-ATTTTATTTAAGATCGT-AAC--TC
418 TT--ATTTAGGTTCGATGATCTATTATCCAACCTAAGTTCATTCAATTTAAGATCATGAACAATT
** *** * *
44708060 CGA-ACAACTCA-C
481 TTATTTGAGTTAGC
* * * * *
44708072 TGATTTAAGATCGCAACTGATATTATTAAAGTTCGCTGATATAAGATCGCAACCTATGTTCATTC
1 TGATTTAAGATCGCAACTGATATTATTAAGGTTCACTGATTTAAGATCACAACCTAAGTTCATTC
* * * *
44708137 GATTTAAGATCATGAACAATTTTTCTTTGAGTTAGCTAATTTAAGATCGCAACTCTGAATAGCTC
66 GATTTAAGATCATGAACAATTTTTATTTGAGTTAGCTGATTTAAGATTGCAACTATGAATAGCTC
* * * * * * *
44708202 GTTGATTTAAGCTTGCAAATGATATTATTAAAGTTTGTTGATTTAAGATCGAAAACTAAGTTCAT
131 GTTGATTTAAGATTGCAACTGATATTATTAAGGTTCGCTGATTTAAGATCGCAACCTAAGTTCAT
* * *
44708267 TTGATTTAAGATCATGAACAATTTTTATTTGAGTTAGCAGATTTAAAATCGCAACT
196 TCGATTTAAGATCATGAACAATTTTTATTTGAGTTAGCTGATTTAAAATAGCAACT
44708323 GATGTTATTA
Statistics
Matches: 1015, Mismatches: 201, Indels: 112
0.76 0.15 0.08
Matches are distributed among these distances:
490 1 0.00
491 168 0.17
495 2 0.00
496 8 0.01
497 423 0.42
498 3 0.00
499 2 0.00
502 1 0.00
503 1 0.00
504 2 0.00
505 1 0.00
506 10 0.01
507 3 0.00
508 2 0.00
510 3 0.00
511 2 0.00
512 10 0.01
513 1 0.00
514 2 0.00
515 1 0.00
516 1 0.00
519 2 0.00
520 1 0.00
521 16 0.02
522 4 0.00
523 2 0.00
526 44 0.04
527 268 0.26
528 11 0.01
529 4 0.00
530 3 0.00
531 6 0.01
532 7 0.01
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (494 bp):
TGATTTAAGATCGCAACTGATATTATTAAGGTTCACTGATTTAAGATCACAACCTAAGTTCATTC
GATTTAAGATCATGAACAATTTTTATTTGAGTTAGCTGATTTAAGATTGCAACTATGAATAGCTC
GTTGATTTAAGATTGCAACTGATATTATTAAGGTTCGCTGATTTAAGATCGCAACCTAAGTTCAT
TCGATTTAAGATCATGAACAATTTTTATTTGAGTTAGCTGATTTAAAATAGCAACTCTGAATAAC
TCATTGATTTAAGATCACAACTGATATTATTAAGGTTTGTTGATTTAAGATCGCAACCTAAGTTC
ATTCATTTAAGATCATGAACAATTTTTATTTGAGTTAGCTGATTTAAGATCGCAACTCCGAACAA
CTCGCTGATTTAAGATCGCAACTGATATTATTTAGGTTCGATGATCTATTATCCAACCTAAGTTC
ATTCAATTTAAGATCATGAACAATTTTATTTGAGTTAGC
Found at i:44707136 original size:101 final size:101
Alignment explanation
Indices: 44706955--44707152 Score: 272
Period size: 101 Copynumber: 2.0 Consensus size: 101
44706945 CAACTCGCTG
* * *
44706955 ATTTAAGATCACAACTGATATTATTTAGGTTCGTTGATTTATTATCACAACCTAAGTTCATTCAA
1 ATTTAAGATCACAACTGATATTATTAAGGTTCCTTGATTTAATATCACAACCTAAGTTCATTCAA
*
44707020 TTTAAGATCATGAACAAATTTTATTTGAGTTAGTTA
66 TTTAAGATCACGAACAAATTTTATTTGAGTTAGTTA
* ** **
44707056 ATTTAAGATCGCAACTGATATTATTAAGGTTCACTT-ATTTAATATTGCAACCTAAGTTCATTGG
1 ATTTAAGATCACAACTGATATTATTAAGGTTC-CTTGATTTAATATCACAACCTAAGTTCATTCA
* * *
44707120 ATTTAAGGTTACGAACAATTTTTATTTGAGTTA
65 ATTTAAGATCACGAACAAATTTTATTTGAGTTA
44707153 CCTGATTTAA
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
101 82 0.98
102 2 0.02
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.41
Consensus pattern (101 bp):
ATTTAAGATCACAACTGATATTATTAAGGTTCCTTGATTTAATATCACAACCTAAGTTCATTCAA
TTTAAGATCACGAACAAATTTTATTTGAGTTAGTTA
Found at i:44707138 original size:233 final size:233
Alignment explanation
Indices: 44706823--44707304 Score: 644
Period size: 233 Copynumber: 2.1 Consensus size: 233
44706813 TAACTCATTG
* *
44706823 ATTTAAGATCTCAACTGATATTATTAAGGTATGCTAATTTAAGATCGCAACCTAAGTTAATTCAC
1 ATTTAAGATCGCAACTGATATTATTAAGGTATACTAATTTAAGATCGCAACCTAAGTTAATTCAC
* *
44706888 TTTAAAATCAAGAACAATTTTTATTTGAGTTAGCTGATTTAAGATCGCAACTCCGAACAACTCGC
66 TTTAAAATCAAGAACAATTTTTATTTGAGTTACCTGATTTAAGATCACAACTCCGAACAACTCGC
* * * * **
44706953 TGATTTAAGATCACAACTGATATTATTTAGGTTCGTTGATTTATTATCACAACCTAAGTTCATTC
131 TAATTTAAGATCACAACTAAAATTATTAAGGTTCGTTGATTTAAGATCACAACCTAAGTTCATTC
44707018 AATTTAAGATCATGAACAAATTTTATTTGAGTTAGTTA
196 AATTTAAGATCATGAACAAATTTTATTTGAGTTAGTTA
* * * * *
44707056 ATTTAAGATCGCAACTGATATTATTAAGGT-TCACTTATTTAATATTGCAACCTAAGTTCATTGG
1 ATTTAAGATCGCAACTGATATTATTAAGGTAT-ACTAATTTAAGATCGCAACCTAAGTTAATT-C
** * * * * * *
44707120 A-TTTAAGGTTACGAACAATTTTTATTTGAGTTACCTGATTTAATATCATAGCTTCGAACAACTC
64 ACTTTAAAATCAAGAACAATTTTTATTTGAGTTACCTGATTTAAGATCACAACTCCGAACAACTC
* * * * *
44707184 GCTAATTTAATATTACAGCTAAAATTATTAAGGTTTGTTGATTTAAGATCACAACCTAATTTCAT
129 GCTAATTTAAGATCACAACTAAAATTATTAAGGTTCGTTGATTTAAGATCACAACCTAAGTTCAT
* * *
44707249 TCGATTTAAGATCATGAACAATTTTTATTTGAGTTAGTTG
194 TCAATTTAAGATCATGAACAAATTTTATTTGAGTTAGTTA
*
44707289 ATTTAAGATAGCAACT
1 ATTTAAGATCGCAACT
44707305 CTGAATACCT
Statistics
Matches: 215, Mismatches: 32, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
232 1 0.00
233 213 0.99
234 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.39
Consensus pattern (233 bp):
ATTTAAGATCGCAACTGATATTATTAAGGTATACTAATTTAAGATCGCAACCTAAGTTAATTCAC
TTTAAAATCAAGAACAATTTTTATTTGAGTTACCTGATTTAAGATCACAACTCCGAACAACTCGC
TAATTTAAGATCACAACTAAAATTATTAAGGTTCGTTGATTTAAGATCACAACCTAAGTTCATTC
AATTTAAGATCATGAACAAATTTTATTTGAGTTAGTTA
Found at i:44707291 original size:132 final size:131
Alignment explanation
Indices: 44707056--44707987 Score: 888
Period size: 132 Copynumber: 7.1 Consensus size: 131
44707046 GAGTTAGTTA
* ** ** * ** *
44707056 ATTTAAGATCGCAACTGATATTATTAAGGTTCACTTATTTAATATTGCAACCTAAGTTCATTGGA
1 ATTTAAGATCACAGTTGATATTATTAAGGTTTGCTGATTTAATATCACAACCTAAGTTCATTCGA
* * * * * *
44707121 TTTAAGGTTACGAACAATTTTTATTTGAGTTACCTGATTTAATATCATAGCTTCGAACAACTCGC
66 TTTAAGATCATGAACAATTTTTATTTGAGTTAGCTGATTTAATATCACA-CTTCGAACAACTCAC
*
44707186 TA
130 TG
* * * * * * * *
44707188 ATTTAATATTACAGCTAAAATTATTAAGGTTTGTTGATTTAAGATCACAACCTAATTTCATTCGA
1 ATTTAAGATCACAGTTGATATTATTAAGGTTTGCTGATTTAATATCACAACCTAAGTTCATTCGA
* * * *
44707253 TTTAAGATCATGAACAATTTTTATTTGAGTTAGTTGATTTAAGAT-AGCAAC-TCTGAATACCTC
66 TTTAAGATCATGAACAATTTTTATTTGAGTTAGCTGATTTAATATCA-C-ACTTC-GAACAACTC
*
44707316 ATTG
128 ACTG
** * * * *
44707320 ATTTAAGATCACAAG-TGATATTATTAACATTTGTTGATTTAAGATCGCAGCCTAAGTTCATTCG
1 ATTTAAGATCAC-AGTTGATATTATTAAGGTTTGCTGATTTAATATCACAACCTAAGTTCATTCG
* * * * * *
44707384 ATTTAAGATCATGAACAATTTTCATTTGAGTTAGTTGATTTAATATCGCAACCTCGAAGAACTCG
65 ATTTAAGATCATGAACAATTTTTATTTGAGTTAGCTGATTTAATATCAC-ACTTCGAACAACTCA
44707449 CTG
129 CTG
* * * * * * * *
44707452 ATTTAATATCGCAATTGATTTTATTAAGGTTCGCTGATCTAATATCGCAACCTAATTTCATTCGA
1 ATTTAAGATCACAGTTGATATTATTAAGGTTTGCTGATTTAATATCACAACCTAAGTTCATTCGA
* * * * * * **
44707517 TTTGAGATCATGAATAATTTTTATTTGAGTTAGCTGATTTAAGATCGCACTACAAACAACTCGTT
66 TTTAAGATCATGAACAATTTTTATTTGAGTTAGCTGATTTAATATCACACTTCGAACAACTCACT
44707582 G
131 G
* * * *
44707583 ATTTAAGGTCGCAGTTGATATTATTAAGGTTCGCTGATTTAATATCACAACCTAAGTTCATTCAA
1 ATTTAAGATCACAGTTGATATTATTAAGGTTTGCTGATTTAATATCACAACCTAAGTTCATTCGA
* * * * * * *
44707648 TTTAAGACCATCAACTATTTTTATTTGAGTTAGCTGATTTAAAATTGCA-ACTCCAAAGAACTCA
66 TTTAAGATCATGAACAATTTTTATTTGAGTTAGCTGATTTAATA-T-CACACTTCGAACAACTCA
*
44707712 TTG
129 CTG
* ** * * * *
44707715 ATTTAAGATCTCAACTGATATTATTAAGGTTCT-CTGATTTAAAATCGCAACATAAGTTCATTCA
1 ATTTAAGATCACAGTTGATATTATTAAGGTT-TGCTGATTTAATATCACAACCTAAGTTCATTCG
* * * *
44707779 ATTTAAGATCATGAACAATTTTTATTTGAGTTAGCTAATTTAAGATCACAAC-ACTGAACAATTC
65 ATTTAAGATCATGAACAATTTTTATTTGAGTTAGCTGATTTAATATCAC-ACTTC-GAACAACTC
*
44707843 ACTT
128 ACTG
* * *
44707847 ATTTAAGATCACATTTGATATTATTAAGGTTTGTTGATTTAATATCACAACCTAAGTTCATTGGA
1 ATTTAAGATCACAGTTGATATTATTAAGGTTTGCTGATTTAATATCACAACCTAAGTTCATTCGA
* * * * ** *
44707912 TTTAAGATCATGAACAATTTTTATTTGAG-TAGCTAATTTAAGATCGCAACTCCGAACAGTTCGC
66 TTTAAGATCATGAACAATTTTTATTTGAGTTAGCTGATTTAATATCAC-ACTTCGAACAACTCAC
44707976 TG
130 TG
44707978 ATTTAAGATC
1 ATTTAAGATC
44707988 GCAACCTAAG
Statistics
Matches: 669, Mismatches: 116, Indels: 31
0.82 0.14 0.04
Matches are distributed among these distances:
130 2 0.00
131 155 0.23
132 506 0.76
133 6 0.01
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.38
Consensus pattern (131 bp):
ATTTAAGATCACAGTTGATATTATTAAGGTTTGCTGATTTAATATCACAACCTAAGTTCATTCGA
TTTAAGATCATGAACAATTTTTATTTGAGTTAGCTGATTTAATATCACACTTCGAACAACTCACT
G
Found at i:44707794 original size:395 final size:396
Alignment explanation
Indices: 44707056--44707987 Score: 1152
Period size: 395 Copynumber: 2.4 Consensus size: 396
44707046 GAGTTAGTTA
* * * *
44707056 ATTTAAGATCGCAACTGATATTATTAAGGTTCACTTATTTAATATTGCAACCTAAGTTCATTGGA
1 ATTTAAGATCGCAATTGATATTATTAAGGTTCGCTGATTTAATATCGCAACCTAAGTTCATTGGA
* * * * * ** * *
44707121 TTTAAGGTTACGAACAATTTTTATTTGAGTTACCTGATTTAATATCATAGCTTCGAACAACTCGC
66 TTTAAGATCATGAACAATTTTTATTTGAGTTAGCTGATTTAAGATCGCAGCTACAAACAACTCGC
* * * * *
44707186 TAATTTAATATTACAGCTAAAATTATTAAGGTTTGTTGATTTAAGATCACAACCTAATTTCATTC
131 TAATTTAAGATCACAGCTAAAATTATTAAGGTTCGCTGATTTAAGATCACAACCTAAGTTCATTC
* * * * * ** * *
44707251 GATTTAAGATCATGAACAATTTTTATTTGAGTTAGTTGATTTAAGATAGCAACTCTGAATACCTC
196 AATTTAAGACCATCAACAATTTTTATTTGAGTTAGCTGATTTAAAATAGCAACTCCAAAGAACTC
* * * * *
44707316 ATTGATTTAAGATCACAAGTGATATTATTAACATTTGTTGATTTAAGATCGCAGCCTAAGTTCAT
261 ATTGATTTAAGATCACAACTGATATTATTAACATTTGCTGATTTAAAATCGCAACATAAGTTCAT
* * * * * *
44707381 TCGATTTAAGATCATGAACAATTTTCATTTGAGTTAGTTGATTTAATATCGCAAC-CTCGAAGAA
326 TCAATTTAAGATCATGAACAATTTTCATTTGAGTTAGCTAATTTAAGATCACAACACT-GAACAA
*
44707445 CTCGCTG
390 CTCACTG
* * * * *
44707452 ATTTAATATCGCAATTGATTTTATTAAGGTTCGCTGATCTAATATCGCAACCTAATTTCATTCGA
1 ATTTAAGATCGCAATTGATATTATTAAGGTTCGCTGATTTAATATCGCAACCTAAGTTCATTGGA
* * *
44707517 TTTGAGATCATGAATAATTTTTATTTGAGTTAGCTGATTTAAGATCGCA-CTACAAACAACTCGT
66 TTTAAGATCATGAACAATTTTTATTTGAGTTAGCTGATTTAAGATCGCAGCTACAAACAACTCGC
* * * * * * *
44707581 TGATTTAAGGTCGCAGTTGATATTATTAAGGTTCGCTGATTTAATATCACAACCTAAGTTCATTC
131 TAATTTAAGATCACAGCTAAAATTATTAAGGTTCGCTGATTTAAGATCACAACCTAAGTTCATTC
* *
44707646 AATTTAAGACCATCAACTATTTTTATTTGAGTTAGCTGATTTAAAATTGCAACTCCAAAGAACTC
196 AATTTAAGACCATCAACAATTTTTATTTGAGTTAGCTGATTTAAAATAGCAACTCCAAAGAACTC
* **
44707711 ATTGATTTAAGATCTCAACTGATATTATTAAGGTTCT-CTGATTTAAAATCGCAACATAAGTTCA
261 ATTGATTTAAGATCACAACTGATATTATTAACATT-TGCTGATTTAAAATCGCAACATAAGTTCA
*
44707775 TTCAATTTAAGATCATGAACAATTTTTATTTGAGTTAGCTAATTTAAGATCACAACACTGAACAA
325 TTCAATTTAAGATCATGAACAATTTTCATTTGAGTTAGCTAATTTAAGATCACAACACTGAACAA
* *
44707840 TTCACTT
390 CTCACTG
* * * * *
44707847 ATTTAAGATCACATTTGATATTATTAAGGTTTGTTGATTTAATATCACAACCTAAGTTCATTGGA
1 ATTTAAGATCGCAATTGATATTATTAAGGTTCGCTGATTTAATATCGCAACCTAAGTTCATTGGA
* * * * **
44707912 TTTAAGATCATGAACAATTTTTATTTGAG-TAGCTAATTTAAGATCGCAACTCCGAACAGTTCGC
66 TTTAAGATCATGAACAATTTTTATTTGAGTTAGCTGATTTAAGATCGCAGCTACAAACAACTCGC
*
44707976 TGATTTAAGATC
131 TAATTTAAGATC
44707988 GCAACCTAAG
Statistics
Matches: 452, Mismatches: 81, Indels: 7
0.84 0.15 0.01
Matches are distributed among these distances:
394 18 0.04
395 335 0.74
396 99 0.22
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.38
Consensus pattern (396 bp):
ATTTAAGATCGCAATTGATATTATTAAGGTTCGCTGATTTAATATCGCAACCTAAGTTCATTGGA
TTTAAGATCATGAACAATTTTTATTTGAGTTAGCTGATTTAAGATCGCAGCTACAAACAACTCGC
TAATTTAAGATCACAGCTAAAATTATTAAGGTTCGCTGATTTAAGATCACAACCTAAGTTCATTC
AATTTAAGACCATCAACAATTTTTATTTGAGTTAGCTGATTTAAAATAGCAACTCCAAAGAACTC
ATTGATTTAAGATCACAACTGATATTATTAACATTTGCTGATTTAAAATCGCAACATAAGTTCAT
TCAATTTAAGATCATGAACAATTTTCATTTGAGTTAGCTAATTTAAGATCACAACACTGAACAAC
TCACTG
Found at i:44707995 original size:95 final size:96
Alignment explanation
Indices: 44707881--44708088 Score: 312
Period size: 95 Copynumber: 2.2 Consensus size: 96
44707871 TAAGGTTTGT
* *
44707881 TGATTTAATATCACAACCTAAGTTCA-TTGGATTTAAGATCATGAACAATTTTTATTTGAG-TAG
1 TGATTTAAGATCGCAACCTAAGTT-ATTTGGATTTAAGATCATGAACAATTTTTATTTGAGTTAG
** *
44707944 CTAATTTAAGATCGCAACTCCGAACAGTTCGC
65 CTAATTTAAGATCGCAACTCCGAACAACTCAC
**
44707976 TGATTTAAGATCGCAACCTAAGTTATTTGGATTTAAGATCATGAACAATTTTTATTTGAGTTATT
1 TGATTTAAGATCGCAACCTAAGTTATTTGGATTTAAGATCATGAACAATTTTTATTTGAGTTAGC
* *
44708041 TTATTTAAGATCGTAACTCCGAACAACTCAC
66 TAATTTAAGATCGCAACTCCGAACAACTCAC
44708072 TGATTTAAGATCGCAAC
1 TGATTTAAGATCGCAAC
44708089 TGATATTATT
Statistics
Matches: 102, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
94 1 0.01
95 56 0.55
96 45 0.44
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (96 bp):
TGATTTAAGATCGCAACCTAAGTTATTTGGATTTAAGATCATGAACAATTTTTATTTGAGTTAGC
TAATTTAAGATCGCAACTCCGAACAACTCAC
Found at i:44708080 original size:227 final size:228
Alignment explanation
Indices: 44707743--44708212 Score: 647
Period size: 227 Copynumber: 2.1 Consensus size: 228
44707733 TATTATTAAG
* *
44707743 GTTCTCTGATTTAAAATCGCAACATAAGTTCATTCAATTTAAGATCATGAACAATTTTTATTTGA
1 GTTCGCTGATTTAAGATCGCAACATAAGTTCATTCAATTTAAGATCATGAACAATTTTTATTTGA
* * * **
44707808 GTTAGCTAATTTAAGATCACAACACTGAACAATTCACTTATTTAAGATCACATTTGATATTATTA
66 GTTAGCTAATTTAAGATCACAACACCGAACAACTCACTGATTTAAGATCACAACTGATATTATTA
* * * * * *
44707873 AGGTTTGTTGATTTAATATCACAACCTAAGTTCATTGGATTTAAGATCATGAACAATTTTTATTT
131 AAGTTCGCTGATATAAGATCACAACCTAAGTTCATTCGATTTAAGATCATGAACAATTTTTATTT
44707938 GAG-TAGCTAATTTAAGATCGCAACTCCGAACA
196 GAGTTAGCTAATTTAAGATCGCAACTCCGAACA
* **
44707970 GTTCGCTGATTTAAGATCGCAACCTAAGTT-ATTTGGATTTAAGATCATGAACAATTTTTATTTG
1 GTTCGCTGATTTAAGATCGCAACATAAGTTCA-TTCAATTTAAGATCATGAACAATTTTTATTTG
** * ** * *
44708034 AGTTATTTTATTTAAGATCGTAACTCCGAACAACTCACTGATTTAAGATCGCAACTGATATTATT
65 AGTTAGCTAATTTAAGATCACAACACCGAACAACTCACTGATTTAAGATCACAACTGATATTATT
* * *
44708099 AAAGTTCGCTGATATAAGATCGCAACCTATGTTCATTCGATTTAAGATCATGAACAATTTTTCTT
130 AAAGTTCGCTGATATAAGATCACAACCTAAGTTCATTCGATTTAAGATCATGAACAATTTTTATT
* *
44708164 TGAGTTAGCTAATTTAAGATCGCAACTCTGAATA
195 TGAGTTAGCTAATTTAAGATCGCAACTCCGAACA
* *
44708198 GCTCGTTGATTTAAG
1 GTTCGCTGATTTAAG
44708213 CTTGCAAATG
Statistics
Matches: 211, Mismatches: 30, Indels: 3
0.86 0.12 0.01
Matches are distributed among these distances:
226 1 0.00
227 170 0.81
228 40 0.19
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (228 bp):
GTTCGCTGATTTAAGATCGCAACATAAGTTCATTCAATTTAAGATCATGAACAATTTTTATTTGA
GTTAGCTAATTTAAGATCACAACACCGAACAACTCACTGATTTAAGATCACAACTGATATTATTA
AAGTTCGCTGATATAAGATCACAACCTAAGTTCATTCGATTTAAGATCATGAACAATTTTTATTT
GAGTTAGCTAATTTAAGATCGCAACTCCGAACA
Found at i:44708117 original size:132 final size:132
Alignment explanation
Indices: 44707969--44708322 Score: 487
Period size: 132 Copynumber: 2.7 Consensus size: 132
44707959 AACTCCGAAC
44707969 AGTTCGCTGATTTAAGATCGCAACCTAAGTT-ATTTGGATTTAAGATCATGAACAATTTTTATTT
1 AGTTCGCTGATTTAAGATCGCAACCTAAGTTCATTT-GATTTAAGATCATGAACAATTTTTATTT
** * * *
44708033 GAGTTATTTTATTTAAGATCGTAACTCCGAACAACTCACTGATTTAAGATCGCAACTGATATTAT
65 GAGTTAGCTAATTTAAGATCGCAACTCCGAACAACTCACTGATTTAAGATCGCAAATGATATTAT
44708098 TAA
130 TAA
* * * *
44708101 AGTTCGCTGATATAAGATCGCAACCTATGTTCATTCGATTTAAGATCATGAACAATTTTTCTTTG
1 AGTTCGCTGATTTAAGATCGCAACCTAAGTTCATTTGATTTAAGATCATGAACAATTTTTATTTG
* * * ** * *
44708166 AGTTAGCTAATTTAAGATCGCAACTCTGAATAGCTCGTTGATTTAAGCTTGCAAATGATATTATT
66 AGTTAGCTAATTTAAGATCGCAACTCCGAACAACTCACTGATTTAAGATCGCAAATGATATTATT
44708231 AA
131 AA
* * * *
44708233 AGTTTGTTGATTTAAGATCGAAAACTAAGTTCATTTGATTTAAGATCATGAACAATTTTTATTTG
1 AGTTCGCTGATTTAAGATCGCAACCTAAGTTCATTTGATTTAAGATCATGAACAATTTTTATTTG
*
44708298 AGTTAGC-AGATTTAAAATCGCAACT
66 AGTTAGCTA-ATTTAAGATCGCAACT
44708323 GATGTTATTA
Statistics
Matches: 195, Mismatches: 25, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
131 1 0.01
132 191 0.98
133 3 0.02
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (132 bp):
AGTTCGCTGATTTAAGATCGCAACCTAAGTTCATTTGATTTAAGATCATGAACAATTTTTATTTG
AGTTAGCTAATTTAAGATCGCAACTCCGAACAACTCACTGATTTAAGATCGCAAATGATATTATT
AA
Found at i:44708188 original size:65 final size:64
Alignment explanation
Indices: 44707969--44708321 Score: 191
Period size: 65 Copynumber: 5.4 Consensus size: 64
44707959 AACTCCGAAC
* * *
44707969 AGTTCGCTGATTTAAGATCGCAACCTAAGTT-ATTTGGATTTAAGATCATGAACAATTTTTATTT
1 AGTTAGCTAATTTAAGATCGCAACCTATGTTCA-TT-GATTTAAGATCATGAACAATTTTTATTT
44708033 G
64 G
** * * * *** * * *
44708034 AGTTATTTTATTTAAGATCGTAACTCCGAACAACTCACTGATTTAAGATC--GCAACTGA-TATT
1 AGTTAGCTAATTTAAGATCGCAA--CC-TA-TGTTCATTGATTTAAGATCATG-AAC-AATTTTT
**
44708096 ATTAA
60 ATTTG
* * * *
44708101 AGTTCGCTGATATAAGATCGCAACCTATGTTCATTCGATTTAAGATCATGAACAATTTTTCTTTG
1 AGTTAGCTAATTTAAGATCGCAACCTATGTTCATT-GATTTAAGATCATGAACAATTTTTATTTG
* * * * *
44708166 AGTTAGCTAATTTAAGATCGCAACTCTGAATAGCTCGTTGATTTAAG--CTTGCA-AATGATATT
1 AGTTAGCTAATTTAAGATCGCAAC-CT--AT-GTTCATTGATTTAAGATCATGAACAAT--TTTT
**
44708228 ATTAA
60 ATTTG
* * * * * *
44708233 AGTTTGTTGATTTAAGATCGAAAACTAAGTTCATTTGATTTAAGATCATGAACAATTTTTATTTG
1 AGTTAGCTAATTTAAGATCGCAACCTATGTTCA-TTGATTTAAGATCATGAACAATTTTTATTTG
*
44708298 AGTTAGC-AGATTTAAAATCGCAAC
1 AGTTAGCTA-ATTTAAGATCGCAAC
44708322 TGATGTTATT
Statistics
Matches: 207, Mismatches: 59, Indels: 44
0.67 0.19 0.14
Matches are distributed among these distances:
63 7 0.03
64 24 0.12
65 75 0.36
66 14 0.07
67 55 0.27
68 23 0.11
69 8 0.04
70 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (64 bp):
AGTTAGCTAATTTAAGATCGCAACCTATGTTCATTGATTTAAGATCATGAACAATTTTTATTTG
Found at i:44708275 original size:359 final size:363
Alignment explanation
Indices: 44707611--44708493 Score: 1129
Period size: 359 Copynumber: 2.4 Consensus size: 363
44707601 TATTATTAAG
* * * * *
44707611 GTTCGCTGATTTAATATCACAACCTAAGTTCATTCA-ATTTAAGACCATCAACTATTTTTATTTG
1 GTTCGCTGATTTAAGATCGCAACCTAAGTTCATT-AGATTTAAGATCATGAACAATTTTTATTTG
* * * * * *
44707675 AGTTAGCTGATTTAAAATTGCAACTCCAAAGAACTCATTGATTTAAGATCTCAACTGATATTATT
65 AGTTAGCTGATTTAAGATTGTAACTCCGAACAACTCACTGATTTAAGATCGCAACTGATATTATT
* * * *
44707740 AAGGTTCTCTGATTTAAAATCGCAACATAAGTTCATTCAATTTAAGATCATGAACAATTTTTATT
130 AAGGTTCGCTGATATAAGATCGCAACCTAAGTTCATTCAATTTAAGATCATGAACAATTTTTATT
* **
44707805 TGAGTTAGCTAATTTAAGATCACAACACTGAACAATTCACTTATTTAAGATCACATTTGATATTA
195 TGAGTTAGCTAATTTAAGATCACAACACTGAACAACTCACTTATTTAAGATCACAAATGATATTA
* * *
44707870 TTAAGGTTTGTTGATTTAATATCACAACCTAAGTTCATTGGATTTAAGATCATGAACAATTTTTA
260 TTAAAGTTTGTTGATTTAAGATCACAAACTAAGTTCATTGGATTTAAGATCATGAACAATTTTTA
* *
44707935 TTTGAG-TAGCTA-ATTTAAGATCGCAACT-CCG---AAC
325 TTTGAGTTAGC-AGATTTAAAATCGCAACTGACGTATAAC
*
44707969 AGTTCGCTGATTTAAGATCGCAACCTAAGTT-ATTTGGATTTAAGATCATGAACAATTTTTATTT
1 -GTTCGCTGATTTAAGATCGCAACCTAAGTTCA-TTAGATTTAAGATCATGAACAATTTTTATTT
** * *
44708033 GAGTTATTTTATTTAAGATCGTAACTCCGAACAACTCACTGATTTAAGATCGCAACTGATATTAT
64 GAGTTAGCTGATTTAAGATTGTAACTCCGAACAACTCACTGATTTAAGATCGCAACTGATATTAT
* * * *
44708098 TAAAGTTCGCTGATATAAGATCGCAACCTATGTTCATTCGATTTAAGATCATGAACAATTTTTCT
129 TAAGGTTCGCTGATATAAGATCGCAACCTAAGTTCATTCAATTTAAGATCATGAACAATTTTTAT
* * * * * * **
44708163 TTGAGTTAGCTAATTTAAGATCGCAACTCTGAATAGCTC-GTTGATTTAAGCTTGCAAATGATAT
194 TTGAGTTAGCTAATTTAAGATCACAACACTGAACAACTCACTT-ATTTAAGATCACAAATGATAT
*
44708227 TATTAAAGTTTGTTGATTTAAGATCGA-AAACTAAGTTCATTTGATTTAAGATCATGAACAATTT
258 TATTAAAGTTTGTTGATTTAAGATC-ACAAACTAAGTTCATTGGATTTAAGATCATGAACAATTT
*
44708291 TTATTTGAGTTAGCAGATTTAAAATCGCAACTGATGTTATTAAC
322 TTATTTGAGTTAGCAGATTTAAAATCGCAACTGACG-TA-TAAC
** * * * *
44708335 GTTTACTGATTTAAGATTGCAACCTAAGTTCATTAGATTTAAAATCATGAATAATTTTTATTTGT
1 GTTCGCTGATTTAAGATCGCAACCTAAGTTCATTAGATTTAAGATCATGAACAATTTTTATTTGA
* * * * *
44708400 GTTAGCTGATTTAAGATTGTAACCCCGAACAACTCTCTAATTTAAGATCGCAACTAATATTGTTA
66 GTTAGCTGATTTAAGATTGTAACTCCGAACAACTCACTGATTTAAGATCGCAACTGATATTATTA
* *
44708465 AGGTCCGCTGATATAAGATCACAACCTAA
131 AGGTTCGCTGATATAAGATCGCAACCTAA
44708494 CTCTAATTAA
Statistics
Matches: 449, Mismatches: 62, Indels: 20
0.85 0.12 0.04
Matches are distributed among these distances:
358 3 0.01
359 284 0.63
360 20 0.04
361 1 0.00
365 137 0.31
366 4 0.01
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (363 bp):
GTTCGCTGATTTAAGATCGCAACCTAAGTTCATTAGATTTAAGATCATGAACAATTTTTATTTGA
GTTAGCTGATTTAAGATTGTAACTCCGAACAACTCACTGATTTAAGATCGCAACTGATATTATTA
AGGTTCGCTGATATAAGATCGCAACCTAAGTTCATTCAATTTAAGATCATGAACAATTTTTATTT
GAGTTAGCTAATTTAAGATCACAACACTGAACAACTCACTTATTTAAGATCACAAATGATATTAT
TAAAGTTTGTTGATTTAAGATCACAAACTAAGTTCATTGGATTTAAGATCATGAACAATTTTTAT
TTGAGTTAGCAGATTTAAAATCGCAACTGACGTATAAC
Found at i:44708276 original size:227 final size:222
Alignment explanation
Indices: 44707816--44708453 Score: 568
Period size: 233 Copynumber: 2.8 Consensus size: 222
44707806 GAGTTAGCTA
* * * * * ** * *
44707816 ATTTAAGATCACAACACTGAACAATTCACTTATTTAAGATCACATTTGATATTATTAAGGTTTGT
1 ATTTAAGATCATAACTCTGAACAACTCACTGATTTAAGATCGCAACTGATATTATTAAAGTTTGC
* * *
44707881 TGATTTAATATCACAACCTAAGTTCATTGGATTTAAGATCATGAACAATTTTTATTTGAG-TAGC
66 TGATTTAAGATCGCAACCTAAGTTCATTAGATTTAAGATCATGAACAATTTTTATTTGAGTTAGC
* * *
44707945 TAATTTAAGATCGCAACTCCGAACAGTTCGCTGATTTAAGATCGCAACCTAAGTTATTTGGATTT
131 TAATTTAAGATCGCAACTCCGAACAGCTCGCTGATTTAAGATCGCAACATAAATTATTTGGATTT
* *
44708010 AAGATCATGAACAATTTTTATTTGAGTTATTTT
196 AAGATCA-GAACAA--TCTA--T-AGTTATTTG
* * *
44708043 ATTTAAGATCGTAACTCCGAACAACTCACTGATTTAAGATCGCAACTGATATTATTAAAGTTCGC
1 ATTTAAGATCATAACTCTGAACAACTCACTGATTTAAGATCGCAACTGATATTATTAAAGTTTGC
* * * *
44708108 TGATATAAGATCGCAACCTATGTTCATTCGATTTAAGATCATGAACAATTTTTCTTTGAGTTAGC
66 TGATTTAAGATCGCAACCTAAGTTCATTAGATTTAAGATCATGAACAATTTTTATTTGAGTTAGC
* * * * *
44708173 TAATTTAAGATCGCAACTCTGAATAGCTCGTTGATTTAAGCTTGCAA-ATGATATTATTAAAGTT
131 TAATTTAAGATCGCAACTCCGAACAGCTCGCTGATTTAAGATCGCAACAT-A-A--ATT--A-TT
44708237 TGTTGATTTAAGATC-GAA-AA-CTA-AGTTCATTTG
189 TG--GATTTAAGATCAGAACAATCTATAGTT-ATTTG
* * *** * * * * * *
44708270 ATTTAAGATCATGAACAATTTTTATTTGAGTTAGCAGATTTAAAATCGCAACTGATGTTATTAAC
1 ATTTAAGATCAT-AAC---TCTGA-ACAACTCA-CTGATTTAAGATCGCAACTGATATTATTAAA
* * * * *
44708335 GTTTACTGATTTAAGATTGCAACCTAAGTTCATTAGATTTAAAATCATGAATAATTTTTATTTGT
60 GTTTGCTGATTTAAGATCGCAACCTAAGTTCATTAGATTTAAGATCATGAACAATTTTTATTTGA
* * * * * * *
44708400 GTTAGCTGATTTAAGATTGTAACCCCGAACAACTCTCTAATTTAAGATCGCAAC
125 GTTAGCTAATTTAAGATCGCAACTCCGAACAGCTCGCTGATTTAAGATCGCAAC
44708454 TAATATTGTT
Statistics
Matches: 330, Mismatches: 63, Indels: 29
0.78 0.15 0.07
Matches are distributed among these distances:
226 4 0.01
227 123 0.37
228 49 0.15
229 1 0.00
230 2 0.01
231 4 0.01
232 3 0.01
233 126 0.38
234 7 0.02
236 11 0.03
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (222 bp):
ATTTAAGATCATAACTCTGAACAACTCACTGATTTAAGATCGCAACTGATATTATTAAAGTTTGC
TGATTTAAGATCGCAACCTAAGTTCATTAGATTTAAGATCATGAACAATTTTTATTTGAGTTAGC
TAATTTAAGATCGCAACTCCGAACAGCTCGCTGATTTAAGATCGCAACATAAATTATTTGGATTT
AAGATCAGAACAATCTATAGTTATTTG
Found at i:44708347 original size:101 final size:101
Alignment explanation
Indices: 44708216--44708413 Score: 279
Period size: 101 Copynumber: 2.0 Consensus size: 101
44708206 ATTTAAGCTT
** * *
44708216 GCAAATGATATTATTAAAGTTTGTTGATTTAAGATCGAAAACTAAGTTCATTTGATTTAAGATCA
1 GCAAATGATATTATTAAAGTTTACTGATTTAAGATCGAAAACTAAGTTCATTAGATTTAAAATCA
44708281 TGAACAATTTTTATTTGAGTTAGCAGATTTAAAATC
66 TGAACAATTTTTATTTGAGTTAGCAGATTTAAAATC
* * * * * *
44708317 GCAACTGATGTTATTAACGTTTACTGATTTAAGATTGCAACCTAAGTTCATTAGATTTAAAATCA
1 GCAAATGATATTATTAAAGTTTACTGATTTAAGATCGAAAACTAAGTTCATTAGATTTAAAATCA
* * *
44708382 TGAATAATTTTTATTTGTGTTAGCTGATTTAA
66 TGAACAATTTTTATTTGAGTTAGCAGATTTAA
44708414 GATTGTAACC
Statistics
Matches: 84, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
101 84 1.00
ACGTcount: A:0.35, C:0.09, G:0.15, T:0.41
Consensus pattern (101 bp):
GCAAATGATATTATTAAAGTTTACTGATTTAAGATCGAAAACTAAGTTCATTAGATTTAAAATCA
TGAACAATTTTTATTTGAGTTAGCAGATTTAAAATC
Found at i:44714568 original size:25 final size:24
Alignment explanation
Indices: 44714530--44714576 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
44714520 TAATTATATT
*
44714530 ATAATTTTATAATTGATAATAAAAA
1 ATAATTTTATAATT-AAAATAAAAA
44714555 ATAATTTGTA-AATTAAAATAAA
1 ATAATTT-TATAATTAAAATAAA
44714577 TTTTAAAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 7 0.35
25 11 0.55
26 2 0.10
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.38
Consensus pattern (24 bp):
ATAATTTTATAATTAAAATAAAAA
Found at i:44715217 original size:17 final size:17
Alignment explanation
Indices: 44715195--44715280 Score: 68
Period size: 19 Copynumber: 4.8 Consensus size: 17
44715185 ATCCTAAAAT
44715195 ATTATTTAAAAATCAT-A
1 ATTATTTAAAAAT-ATAA
*
44715212 ATTATTTTCAAAATTATAAA
1 ATTA-TTT-AAAAATAT-AA
*
44715232 AGTTATTAAAAAATATAA
1 A-TTATTTAAAAATATAA
*
44715250 ATTATTAAAATAATAATAA
1 ATTATTTAAA-AAT-ATAA
44715269 ATTA-TTAAAAAT
1 ATTATTTAAAAAT
44715281 TTCAAAAAAT
Statistics
Matches: 58, Mismatches: 4, Indels: 14
0.76 0.05 0.18
Matches are distributed among these distances:
17 16 0.28
18 15 0.26
19 20 0.34
20 4 0.07
21 3 0.05
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.40
Consensus pattern (17 bp):
ATTATTTAAAAATATAA
Found at i:44715244 original size:38 final size:36
Alignment explanation
Indices: 44715195--44715279 Score: 93
Period size: 38 Copynumber: 2.3 Consensus size: 36
44715185 ATCCTAAAAT
* *
44715195 ATTATTTAAAAATCAT-AATTATTTTCAAAATTATAA-AA
1 ATTATTAAAAAAT-ATAAATTA--TT-AAAATAATAATAA
*
44715233 GTTATTAAAAAATATAAATTATTAAAATAATAATAA
1 ATTATTAAAAAATATAAATTATTAAAATAATAATAA
44715269 ATTATTAAAAA
1 ATTATTAAAAA
44715280 TTTCAAAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
35 9 0.22
36 14 0.34
37 2 0.05
38 16 0.39
ACGTcount: A:0.58, C:0.02, G:0.01, T:0.39
Consensus pattern (36 bp):
ATTATTAAAAAATATAAATTATTAAAATAATAATAA
Found at i:44718685 original size:18 final size:18
Alignment explanation
Indices: 44718662--44718698 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
44718652 ATTCAGTGGA
*
44718662 ATAAAAGCATTGTTAGTG
1 ATAAAAGCATTGTGAGTG
44718680 ATAAAAGCATTGTGAGTG
1 ATAAAAGCATTGTGAGTG
44718698 A
1 A
44718699 AACAGTGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.41, C:0.05, G:0.24, T:0.30
Consensus pattern (18 bp):
ATAAAAGCATTGTGAGTG
Found at i:44721696 original size:131 final size:131
Alignment explanation
Indices: 44721462--44721724 Score: 499
Period size: 131 Copynumber: 2.0 Consensus size: 131
44721452 TATCTTAGTG
44721462 TCAAAAATTGAAAGCTTTGAAGAGATTTAAAATACGATCATTTGTTAAAATATCAAAAATTTTCA
1 TCAAAAATTGAAAGCTTTGAAGAGATTTAAAATACGATCATTTGTTAAAATATCAAAAATTTTCA
*
44721527 GAAAATGGGCATATTTCACGTTAATCGAGAAAGAGAATTATGTCCCATAAGTTAGGTCACAATGT
66 GAAAAGGGGCATATTTCACGTTAATCGAGAAAGAGAATTATGTCCCATAAGTTAGGTCACAATGT
44721592 C
131 C
44721593 TCAAAAATTGAAAGCTTTGAAGAGATTTAAAATACGATCATTTGTTAAAATATCAAAAATTTTCA
1 TCAAAAATTGAAAGCTTTGAAGAGATTTAAAATACGATCATTTGTTAAAATATCAAAAATTTTCA
* *
44721658 GAAAAGGGGCATATTTCACGTTAATCGAGAAAGAGAATTATGTCCCGTAAGTTAGGTCACTATGT
66 GAAAAGGGGCATATTTCACGTTAATCGAGAAAGAGAATTATGTCCCATAAGTTAGGTCACAATGT
44721723 C
131 C
44721724 T
1 T
44721725 TAAACCCCGA
Statistics
Matches: 129, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
131 129 1.00
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (131 bp):
TCAAAAATTGAAAGCTTTGAAGAGATTTAAAATACGATCATTTGTTAAAATATCAAAAATTTTCA
GAAAAGGGGCATATTTCACGTTAATCGAGAAAGAGAATTATGTCCCATAAGTTAGGTCACAATGT
C
Found at i:44722349 original size:17 final size:17
Alignment explanation
Indices: 44722323--44722360 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
44722313 GTAGTAAAAT
*
44722323 TAAAATAAAA-AATACAA
1 TAAAAGAAAATAATA-AA
44722340 TAAAAGAAAATAATAAA
1 TAAAAGAAAATAATAAA
44722357 TAAA
1 TAAA
44722361 TAAATGTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.18
Consensus pattern (17 bp):
TAAAAGAAAATAATAAA
Found at i:44722350 original size:22 final size:21
Alignment explanation
Indices: 44722324--44722364 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
44722314 TAGTAAAATT
44722324 AAAATAAAAAATACAATAAAAG
1 AAAATAAAAAATA-AATAAAAG
*
44722346 AAAATAATAAATAAATAAA
1 AAAATAAAAAATAAATAAA
44722365 TGTGAAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.17
Consensus pattern (21 bp):
AAAATAAAAAATAAATAAAAG
Found at i:44724483 original size:19 final size:18
Alignment explanation
Indices: 44724461--44724510 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
44724451 ATCAAAACTC
*
44724461 GTTTCTCCAAAGTTTTAAA
1 GTTTATCCAAA-TTTTAAA
*
44724480 GTTTATCCAAATTTTCAA
1 GTTTATCCAAATTTTAAA
*
44724498 GTTT-TCAAAATTT
1 GTTTATCCAAATTT
44724511 AAGTTTTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
17 8 0.29
18 10 0.36
19 10 0.36
ACGTcount: A:0.32, C:0.14, G:0.08, T:0.46
Consensus pattern (18 bp):
GTTTATCCAAATTTTAAA
Found at i:44724523 original size:14 final size:15
Alignment explanation
Indices: 44724496--44724524 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
44724486 CCAAATTTTC
44724496 AAGTTTTCAAAATTT
1 AAGTTTTCAAAATTT
44724511 AAGTTTT-AAAATTT
1 AAGTTTTCAAAATTT
44724525 TTATTACAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.48
Consensus pattern (15 bp):
AAGTTTTCAAAATTT
Found at i:44727871 original size:15 final size:15
Alignment explanation
Indices: 44727851--44727881 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
44727841 ACATCTACCG
*
44727851 AAATAGATGAATTAC
1 AAATAGACGAATTAC
44727866 AAATAGACGAATTAC
1 AAATAGACGAATTAC
44727881 A
1 A
44727882 TACAACATCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.10, G:0.13, T:0.23
Consensus pattern (15 bp):
AAATAGACGAATTAC
Found at i:44728784 original size:21 final size:23
Alignment explanation
Indices: 44728742--44728784 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 23
44728732 TAATTAATCA
*
44728742 TAAACAGAAGCAAATCTCTTTTC
1 TAAACAGAAGCAAATATCTTTTC
*
44728765 TAAA-AGAAG-AAATATGTTTT
1 TAAACAGAAGCAAATATCTTTT
44728785 AAAAAATTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 9 0.50
22 5 0.28
23 4 0.22
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.33
Consensus pattern (23 bp):
TAAACAGAAGCAAATATCTTTTC
Found at i:44732366 original size:25 final size:25
Alignment explanation
Indices: 44732321--44732387 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
44732311 GTCATTAGGG
* *
44732321 TTACCGATTC-CAGCTCTTATGAGC
1 TTACCGATACTCAGCTCGTATGAGC
44732345 TTACCGATACTCAGCTCGTATGAGC
1 TTACCGATACTCAGCTCGTATGAGC
* * *
44732370 TTACTGTTATTCAGCTCG
1 TTACCGATACTCAGCTCG
44732388 GAGGATCTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
24 9 0.24
25 28 0.76
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.34
Consensus pattern (25 bp):
TTACCGATACTCAGCTCGTATGAGC
Found at i:44737922 original size:13 final size:13
Alignment explanation
Indices: 44737898--44737941 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
44737888 TTCTTTTAAT
44737898 TAAC-TAATAAAA
1 TAACATAATAAAA
44737910 TAA-ATATATAAAA
1 TAACATA-ATAAAA
44737923 TAACATAATAAAA
1 TAACATAATAAAA
*
44737936 AAACAT
1 TAACAT
44737942 CAACCGTACC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
12 5 0.18
13 20 0.71
14 3 0.11
ACGTcount: A:0.68, C:0.07, G:0.00, T:0.25
Consensus pattern (13 bp):
TAACATAATAAAA
Found at i:44738289 original size:158 final size:157
Alignment explanation
Indices: 44738002--44738308 Score: 524
Period size: 158 Copynumber: 1.9 Consensus size: 157
44737992 AACTATCTTA
*
44738002 AGTTAATCAATTAACTAATAGAAATTAAATGTTTTTAACTTTTACGATTTAGTCCTTTTTACTTA
1 AGTTAATCAATTAACTAATAGAAATTAAATGTTTTTAACTTTTACGATTTAGACCTTTTTACTTA
* * * *
44738067 ATTAGCTATTTAAATGCTAAAATTTCTTAGCCAAATTTTAATATGACCCTAATAACACATATTTA
66 ATTAGCTATTTAAACGCTAAAATTTCGTAACCAAATTTTAATATAACCCTAATAACACATATTTA
44738132 CGGGCTCAGTTTATAAAAACGAGGTCT
131 CGGGCTCAGTTTATAAAAACGAGGTCT
* * * *
44738159 AGTTAATCAATTAACTAATAGAAATTAACTTTTTTTAAATTTTTATGATTTAGACCTTTTTACTT
1 AGTTAATCAATTAACTAATAGAAATTAAATGTTTTT-AACTTTTACGATTTAGACCTTTTTACTT
44738224 AATTAGCTATTTAAACGCTAAAATTTCGTAACCAAATTTTAATATAACCCTAATAACACATATTT
65 AATTAGCTATTTAAACGCTAAAATTTCGTAACCAAATTTTAATATAACCCTAATAACACATATTT
44738289 ACGGGCTCAGTTTATAAAAA
130 ACGGGCTCAGTTTATAAAAA
44738309 TAAGGTCTCG
Statistics
Matches: 140, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
157 34 0.24
158 106 0.76
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.40
Consensus pattern (157 bp):
AGTTAATCAATTAACTAATAGAAATTAAATGTTTTTAACTTTTACGATTTAGACCTTTTTACTTA
ATTAGCTATTTAAACGCTAAAATTTCGTAACCAAATTTTAATATAACCCTAATAACACATATTTA
CGGGCTCAGTTTATAAAAACGAGGTCT
Found at i:44739649 original size:52 final size:52
Alignment explanation
Indices: 44739570--44739668 Score: 137
Period size: 52 Copynumber: 1.9 Consensus size: 52
44739560 TCAGTGATGG
* * *
44739570 TTTTTGAAGTGAAGAAATCATAGCCACTACCGAGGATGTCGTAACACCGATT
1 TTTTTGAAGTGAAAAAATCATAGCCACTACCGAGGATGCCGCAACACCGATT
* *
44739622 TTTTTGAAGTGAAAAAATTAT-GACCACTATCGAGGATGCCGCAACAC
1 TTTTTGAAGTGAAAAAATCATAG-CCACTACCGAGGATGCCGCAACAC
44739669 TAGCTACTTG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
51 1 0.02
52 40 0.98
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.26
Consensus pattern (52 bp):
TTTTTGAAGTGAAAAAATCATAGCCACTACCGAGGATGCCGCAACACCGATT
Found at i:44739942 original size:34 final size:34
Alignment explanation
Indices: 44739904--44739972 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
44739894 TTCACAATTT
44739904 TAGGCTAGGTTTCCTTTCTTTTTCTTTTCCTTTC
1 TAGGCTAGGTTTCCTTTCTTTTTCTTTTCCTTTC
44739938 TAGGCTAGGTTTCCTTTCTTTTTCTTTTCCTTTC
1 TAGGCTAGGTTTCCTTTCTTTTTCTTTTCCTTTC
44739972 T
1 T
44739973 TTTCGTTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.06, C:0.23, G:0.12, T:0.59
Consensus pattern (34 bp):
TAGGCTAGGTTTCCTTTCTTTTTCTTTTCCTTTC
Found at i:44739981 original size:16 final size:16
Alignment explanation
Indices: 44739913--44739975 Score: 65
Period size: 16 Copynumber: 3.8 Consensus size: 16
44739903 TTAGGCTAGG
44739913 TTTCCTTTCTTTTTCT
1 TTTCCTTTCTTTTTCT
***
44739929 TTTCCTTTC-TAGGCT
1 TTTCCTTTCTTTTTCT
44739944 AGGTTTCCTTTCTTTTTCT
1 ---TTTCCTTTCTTTTTCT
44739963 TTTCCTTTCTTTT
1 TTTCCTTTCTTTT
44739976 CGTTTTTAGA
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
15 3 0.08
16 22 0.59
18 9 0.24
19 3 0.08
ACGTcount: A:0.03, C:0.24, G:0.06, T:0.67
Consensus pattern (16 bp):
TTTCCTTTCTTTTTCT
Found at i:44740006 original size:25 final size:26
Alignment explanation
Indices: 44739971--44740019 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
44739961 CTTTTCCTTT
*
44739971 CTTTTCGTTTTTAGATTAGATTTTTC
1 CTTTTCGTTTTTAGAATAGATTTTTC
*
44739997 CTTTTC-TTTTTAGAATATATTTT
1 CTTTTCGTTTTTAGAATAGATTTT
44740020 ATTTTTATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.18, C:0.10, G:0.08, T:0.63
Consensus pattern (26 bp):
CTTTTCGTTTTTAGAATAGATTTTTC
Found at i:44742889 original size:21 final size:24
Alignment explanation
Indices: 44742864--44742907 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
44742854 TCTTATTATT
44742864 AATAT-TATTT-TT-AAGAGATAA
1 AATATATATTTATTCAAGAGATAA
44742885 AATATCATATTTATTCAAGAGAT
1 AATAT-ATATTTATTCAAGAGAT
44742908 TTTTGGGGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 5 0.26
23 5 0.26
24 2 0.11
25 7 0.37
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.41
Consensus pattern (24 bp):
AATATATATTTATTCAAGAGATAA
Found at i:44744716 original size:27 final size:27
Alignment explanation
Indices: 44744680--44744732 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
44744670 AAATTTTAAA
44744680 AAATTCAAAAAAC-TATAAAATATATTTT
1 AAATTCAAAAAACAT-TAAAAT-TATTTT
44744708 AAATT-AAAAAACATTAAAATTATTT
1 AAATTCAAAAAACATTAAAATTATTT
44744733 AAAAAGTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 5 0.21
27 13 0.54
28 6 0.25
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (27 bp):
AAATTCAAAAAACATTAAAATTATTTT
Found at i:44744725 original size:46 final size:46
Alignment explanation
Indices: 44744665--44744756 Score: 107
Period size: 46 Copynumber: 2.0 Consensus size: 46
44744655 ATTAATTTTT
**
44744665 TTAAAAAATTTTAAAA-AATTCAAAAAACTATA-AAATATATTTTAAA
1 TTAAAAAACATTAAAATAATT-AAAAAACTATAGAAATAT-TTTTAAA
* * *
44744711 TTAAAAAACATTAAAATTATTTAAAAAGTATAGAAATATTTTTAAA
1 TTAAAAAACATTAAAATAATTAAAAAACTATAGAAATATTTTTAAA
44744757 ATATTTTTAA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
46 30 0.77
47 9 0.23
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.36
Consensus pattern (46 bp):
TTAAAAAACATTAAAATAATTAAAAAACTATAGAAATATTTTTAAA
Found at i:44744760 original size:11 final size:11
Alignment explanation
Indices: 44744744--44744777 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
44744734 AAAAGTATAG
44744744 AAATATTTTTA
1 AAATATTTTTA
44744755 AAATATTTTT-
1 AAATATTTTTA
44744765 AAA-ATTTTTA
1 AAATATTTTTA
44744775 AAA
1 AAA
44744778 AGTAATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 6 0.27
10 6 0.27
11 10 0.45
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (11 bp):
AAATATTTTTA
Found at i:44744786 original size:20 final size:19
Alignment explanation
Indices: 44744720--44744787 Score: 64
Period size: 20 Copynumber: 3.3 Consensus size: 19
44744710 ATTAAAAAAC
44744720 ATTAAAATTATTTAAAAAGT
1 ATTAAAATT-TTTAAAAAGT
* *
44744740 ATAGAAATATTTTTAAAATATT
1 AT-TAAA-ATTTTTAAAA-AGT
*
44744762 TTTAAAATTTTTAAAAAGT
1 ATTAAAATTTTTAAAAAGT
44744781 AATTAAA
1 -ATTAAA
44744788 TGTTGACATG
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
19 2 0.05
20 17 0.45
21 13 0.34
22 6 0.16
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (19 bp):
ATTAAAATTTTTAAAAAGT
Found at i:44748692 original size:43 final size:43
Alignment explanation
Indices: 44748640--44748824 Score: 149
Period size: 43 Copynumber: 4.3 Consensus size: 43
44748630 TTCTCACAAA
* * *
44748640 CGCCACTAAAGATCATGTTCTTTAGTGTCGTTTTTAGTAAATG
1 CGCCGCTAAAGATCATGATCTTTAGTGGCGTTTTTAGTAAATG
* * * * ** *
44748683 CGCTGCTAAA-AGTCATGTTCTATAGTGGCGCTTTTCCTAAATT
1 CGCCGCTAAAGA-TCATGATCTTTAGTGGCGTTTTTAGTAAATG
* * * * * *
44748726 TGCCACTAAAAATCATGATCTTTAGCT-GCGTTTGTGGTAAAAG
1 CGCCGCTAAAGATCATGATCTTTAG-TGGCGTTTTTAGTAAATG
* * * *
44748769 CGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTTGGGAAAAG
1 CGCCGCTAAAGATCATGATCTTTAGTGGCGTTTTTAGTAAATG
*
44748812 CGCCACTAAAGAT
1 CGCCGCTAAAGAT
44748825 TCTTTAGCGG
Statistics
Matches: 111, Mismatches: 27, Indels: 8
0.76 0.18 0.05
Matches are distributed among these distances:
42 2 0.02
43 107 0.96
44 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (43 bp):
CGCCGCTAAAGATCATGATCTTTAGTGGCGTTTTTAGTAAATG
Found at i:44748699 original size:86 final size:86
Alignment explanation
Indices: 44748602--44748778 Score: 189
Period size: 86 Copynumber: 2.1 Consensus size: 86
44748592 TAAAAAGCCA
* * * *
44748602 CTAAAGGTCATGCTCTTTAGCGGCACTTTT-CTCACAA-ACGCCACTAAAGATCATGTTCTTTAG
1 CTAAAAGTCATGCTCTATAGCGGCACTTTTCCT-A-AATACGCCACTAAAAATCATGATCTTTAG
* * *
44748665 -TGTCGTTTTTAGTAAATGCGCTG
64 CTG-CGTTTGTAGTAAAAGCGCCG
* * * **
44748688 CTAAAAGTCATGTTCTATAGTGGCGCTTTTCCTAAATTTGCCACTAAAAATCATGATCTTTAGCT
1 CTAAAAGTCATGCTCTATAGCGGCACTTTTCCTAAATACGCCACTAAAAATCATGATCTTTAGCT
*
44748753 GCGTTTGTGGTAAAAGCGCCG
66 GCGTTTGTAGTAAAAGCGCCG
44748774 CTAAA
1 CTAAA
44748779 GAACATGATC
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
85 2 0.03
86 69 0.92
87 4 0.05
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.34
Consensus pattern (86 bp):
CTAAAAGTCATGCTCTATAGCGGCACTTTTCCTAAATACGCCACTAAAAATCATGATCTTTAGCT
GCGTTTGTAGTAAAAGCGCCG
Found at i:44748795 original size:86 final size:86
Alignment explanation
Indices: 44748641--44748803 Score: 204
Period size: 86 Copynumber: 1.9 Consensus size: 86
44748631 TCTCACAAAC
* * * * * * *
44748641 GCCACTAAAGATCATGTTCTTTAGTGTCGTTTTTAGTAAATGCGCTGCTAAAAGTCATGTTCTAT
1 GCCACTAAAAATCATGATCTTTAGTGTCGTTTGTAGTAAAAGCGCCGCTAAAAGACATGATCTAT
44748706 AGTGGCGCTTTTCCTAAATTT
66 AGTGGCGCTTTTCCTAAATTT
*
44748727 GCCACTAAAAATCATGATCTTTAGCTG-CGTTTGTGGTAAAAGCGCCGCT-AAAGAACATGATCT
1 GCCACTAAAAATCATGATCTTTAG-TGTCGTTTGTAGTAAAAGCGCCGCTAAAAG-ACATGATCT
* *
44748790 TTAGTGGCGTTTTT
64 ATAGTGGCGCTTTT
44748804 GGGAAAAGCG
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
85 4 0.06
86 59 0.91
87 2 0.03
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (86 bp):
GCCACTAAAAATCATGATCTTTAGTGTCGTTTGTAGTAAAAGCGCCGCTAAAAGACATGATCTAT
AGTGGCGCTTTTCCTAAATTT
Found at i:44750299 original size:39 final size:39
Alignment explanation
Indices: 44750245--44750324 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
44750235 ACAAGTTTAG
44750245 AAAGTAAAATATAAATGAAACTTAAACCAAAATATTATA
1 AAAGTAAAATATAAATGAAACTTAAACCAAAATATTATA
44750284 AAAGTAAAATATAAATGAAACTTAAACCAAAATATTATA
1 AAAGTAAAATATAAATGAAACTTAAACCAAAATATTATA
44750323 AA
1 AA
44750325 TTACATTCAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.62, C:0.07, G:0.05, T:0.25
Consensus pattern (39 bp):
AAAGTAAAATATAAATGAAACTTAAACCAAAATATTATA
Found at i:44767336 original size:9 final size:9
Alignment explanation
Indices: 44767322--44767350 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
44767312 TAAACAATTC
44767322 AATAATATA
1 AATAATATA
44767331 AATAATATA
1 AATAATATA
44767340 AATAATATA
1 AATAATATA
44767349 AA
1 AA
44767351 ATGTGAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (9 bp):
AATAATATA
Found at i:44767766 original size:9 final size:9
Alignment explanation
Indices: 44767748--44767784 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
44767738 TATAGTTTGA
*
44767748 TATTCAAAT
1 TATTCGAAT
44767757 TATTCGAAT
1 TATTCGAAT
*
44767766 TATTCGAGT
1 TATTCGAAT
44767775 TATTCGAAT
1 TATTCGAAT
44767784 T
1 T
44767785 TGAAAACTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:44769413 original size:12 final size:12
Alignment explanation
Indices: 44769396--44769421 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
44769386 CTCTCTGCCT
44769396 TAACAAACAAAA
1 TAACAAACAAAA
44769408 TAACAAACAAAA
1 TAACAAACAAAA
44769420 TA
1 TA
44769422 TTTTAATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.73, C:0.15, G:0.00, T:0.12
Consensus pattern (12 bp):
TAACAAACAAAA
Found at i:44769451 original size:13 final size:13
Alignment explanation
Indices: 44769430--44769460 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
44769420 TATTTTAATT
*
44769430 ATTTTCTAATAAA
1 ATTTCCTAATAAA
44769443 ATTTCCTAATAAA
1 ATTTCCTAATAAA
44769456 ATTTC
1 ATTTC
44769461 TGCCTGCCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.42, C:0.13, G:0.00, T:0.45
Consensus pattern (13 bp):
ATTTCCTAATAAA
Found at i:44770299 original size:77 final size:79
Alignment explanation
Indices: 44770058--44770308 Score: 295
Period size: 78 Copynumber: 3.3 Consensus size: 79
44770048 GGGTGAACTA
* * * *
44770058 ATTTGGGGAAAAGAAATT-CGAAAAAAAGAGAAAGGGATTTCGG-AAAAAA-TTAGGGATTTC--
1 ATTTGGGGAAAAGAAATTGGGAAAAAAA-AGAAAGGGGTTTGGGAAAAAAACTTAAGGATTTCGG
*
44770118 GCAGAGGGGGAATTA
65 GCAGAGGGGGAATTG
* * * *
44770133 ATTTGGGGAAAAGAAATTGGG-GAAAAAAGAAAGGGGTCTGGGAAAGAAACTT-AGAGATTTTGG
1 ATTTGGGGAAAAGAAATTGGGAAAAAAAAGAAAGGGGTTTGGGAAAAAAACTTAAG-GATTTCGG
*
44770196 GCAGAAGGGGAATTG
65 GCAGAGGGGGAATTG
44770211 A-TTGTGGGAAAA-AAATTGGGAAAAAAAAGAAAGGGGTTTGGGAAAAAAACTTAAGGATTTCGG
1 ATTTG-GGGAAAAGAAATTGGGAAAAAAAAGAAAGGGGTTTGGGAAAAAAACTTAAGGATTTCGG
*
44770274 GGAGAGGGGGAATTG
65 GCAGAGGGGGAATTG
* *
44770289 ATTTGGGAAAAAGAATTTGG
1 ATTTGGGGAAAAGAAATTGG
44770309 AGTTTTAGGG
Statistics
Matches: 147, Mismatches: 18, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
74 12 0.08
75 29 0.20
76 8 0.05
77 11 0.07
78 76 0.52
79 11 0.07
ACGTcount: A:0.42, C:0.04, G:0.34, T:0.20
Consensus pattern (79 bp):
ATTTGGGGAAAAGAAATTGGGAAAAAAAAGAAAGGGGTTTGGGAAAAAAACTTAAGGATTTCGGG
CAGAGGGGGAATTG
Found at i:44773065 original size:17 final size:19
Alignment explanation
Indices: 44773043--44773081 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 19
44773033 AATATTGACA
*
44773043 GATTGAA-GTTGTG-ATAT
1 GATTGAATGATGTGTATAT
44773060 GATTGAATGATGTGTATAT
1 GATTGAATGATGTGTATAT
44773079 GAT
1 GAT
44773082 GTATATTAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 7 0.37
18 5 0.26
19 7 0.37
ACGTcount: A:0.31, C:0.00, G:0.28, T:0.41
Consensus pattern (19 bp):
GATTGAATGATGTGTATAT
Found at i:44773690 original size:46 final size:46
Alignment explanation
Indices: 44773439--44773694 Score: 250
Period size: 46 Copynumber: 5.6 Consensus size: 46
44773429 AGTTCTTGCC
* * * * *
44773439 TAGGTTCTCAACTCTTGCATATGTTGCGGACTAAAGGATAC-AGATT
1 TAGGTTCCCAACTCCTGCATATGTTGCGAACTAGAGAATACAAG-TT
* * * ** * *
44773485 TAGGTTCTCAAATCCTGTATACATTAG-AAACTGGAGAATAC-AGATT
1 TAGGTTCCCAACTCCTGCATATGTT-GCGAACTAGAGAATACAAG-TT
* * * *
44773531 CAGGTTCCCAACTCCTACATATGTTAC-AGACTAGAGAATACAGGTT
1 TAGGTTCCCAACTCCTGCATATGTTGCGA-ACTAGAGAATACAAGTT
* * *
44773577 TAGGTTCCCAGCTCCTGCATATGTTGCGGACTAGAGAATACAGGTT
1 TAGGTTCCCAACTCCTGCATATGTTGCGAACTAGAGAATACAAGTT
* * *
44773623 TAGGTTCCCAGCTCCTACATATGTTGCGAACTGGAGAATACAAGTT
1 TAGGTTCCCAACTCCTGCATATGTTGCGAACTAGAGAATACAAGTT
44773669 TAGGTTCCCAACTCCTGCATATGTTG
1 TAGGTTCCCAACTCCTGCATATGTTG
44773695 TGGATTGGAG
Statistics
Matches: 174, Mismatches: 31, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
45 1 0.01
46 171 0.98
47 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (46 bp):
TAGGTTCCCAACTCCTGCATATGTTGCGAACTAGAGAATACAAGTT
Found at i:44773711 original size:138 final size:138
Alignment explanation
Indices: 44773439--44773693 Score: 334
Period size: 138 Copynumber: 1.8 Consensus size: 138
44773429 AGTTCTTGCC
* * * * **
44773439 TAGGTTCTCAACTCTTGCATATGTTGCGGACTAAAGGATACAGATTTAGGTTCTCAAATCCTGTA
1 TAGGTTCCCAACTCCTGCATATGTTGCGGACTAAAGAATACAGATTTAGGTTCCCAAATCCTACA
44773504 TACATTAGAAACTGGAGAATACAGATTCAGGTTCCCAACTCCTACATATGTTACAGACTAGAGAA
66 TACATTAGAAACTGGAGAATACAGATTCAGGTTCCCAACTCCTACATATGTTACAGACTAGAGAA
44773569 TACAGGTT
131 TACAGGTT
* * * **
44773577 TAGGTTCCCAGCTCCTGCATATGTTGCGGACTAGAGAATACAGGTTTAGGTTCCCAGCTCCTACA
1 TAGGTTCCCAACTCCTGCATATGTTGCGGACTAAAGAATACAGATTTAGGTTCCCAAATCCTACA
** * * *
44773642 TATGTT-GCGAACTGGAGAATACA-AGTTTAGGTTCCCAACTCCTGCATATGTT
66 TACATTAG-AAACTGGAGAATACAGA-TTCAGGTTCCCAACTCCTACATATGTT
44773694 GTGGATTGGA
Statistics
Matches: 99, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
137 2 0.02
138 97 0.98
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (138 bp):
TAGGTTCCCAACTCCTGCATATGTTGCGGACTAAAGAATACAGATTTAGGTTCCCAAATCCTACA
TACATTAGAAACTGGAGAATACAGATTCAGGTTCCCAACTCCTACATATGTTACAGACTAGAGAA
TACAGGTT
Found at i:44773719 original size:46 final size:45
Alignment explanation
Indices: 44773514--44773712 Score: 254
Period size: 46 Copynumber: 4.3 Consensus size: 45
44773504 TACATTAGAA
* * *
44773514 ACTGGAGAATACAGATTCAGGTTCCCAACTCCTACATATGTTACAG
1 ACTGGAGAATACAG-TTTAGGTTCCCAACTCCTACATATGTTGCGG
* * *
44773560 ACTAGAGAATACAGGTTTAGGTTCCCAGCTCCTGCATATGTTGCGG
1 ACTGGAGAATACA-GTTTAGGTTCCCAACTCCTACATATGTTGCGG
* * *
44773606 ACTAGAGAATACAGGTTTAGGTTCCCAGCTCCTACATATGTTGCGA
1 ACTGGAGAATACA-GTTTAGGTTCCCAACTCCTACATATGTTGCGG
* *
44773652 ACTGGAGAATACAAGTTTAGGTTCCCAACTCCTGCATATGTTGTGG
1 ACTGGAGAATAC-AGTTTAGGTTCCCAACTCCTACATATGTTGCGG
*
44773698 ATTGGAGAATACAGT
1 ACTGGAGAATACAGT
44773713 AATAGGTAGT
Statistics
Matches: 137, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
45 3 0.02
46 132 0.96
47 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (45 bp):
ACTGGAGAATACAGTTTAGGTTCCCAACTCCTACATATGTTGCGG
Found at i:44773719 original size:92 final size:92
Alignment explanation
Indices: 44773514--44773719 Score: 283
Period size: 92 Copynumber: 2.2 Consensus size: 92
44773504 TACATTAGAA
*
44773514 ACTGGAGAATACAG-ATTCAGGTTCCCAACTCCTACATATGTTACAGACTAGAGAATACAGGTTT
1 ACTGGAGAATACAGTATT-AGGTTCCCAACTCCTACATATGTTACAGACTAGAGAATACAAGTTT
*
44773578 AGGTTCCCAGCTCCTGCATATGTTGCGG
65 AGGTTCCCAACTCCTGCATATGTTGCGG
* * * *
44773606 ACTAGAGAATACAGGT-TTAGGTTCCCAGCTCCTACATATGTTGC-GAACTGGAGAATACAAGTT
1 ACTGGAGAATACA-GTATTAGGTTCCCAACTCCTACATATGTTACAG-ACTAGAGAATACAAGTT
*
44773669 TAGGTTCCCAACTCCTGCATATGTTGTGG
64 TAGGTTCCCAACTCCTGCATATGTTGCGG
* *
44773698 ATTGGAGAATACAGTAATAGGT
1 ACTGGAGAATACAGTATTAGGT
44773720 AGTGGCCAGG
Statistics
Matches: 100, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
91 3 0.03
92 94 0.94
93 3 0.03
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (92 bp):
ACTGGAGAATACAGTATTAGGTTCCCAACTCCTACATATGTTACAGACTAGAGAATACAAGTTTA
GGTTCCCAACTCCTGCATATGTTGCGG
Found at i:44775774 original size:51 final size:51
Alignment explanation
Indices: 44775698--44775888 Score: 199
Period size: 51 Copynumber: 3.8 Consensus size: 51
44775688 GATACCGGTT
* * *
44775698 CACATAGTAGCCTGCACAGAGTACTACACATGTGACCATCA-CTAACTGATA
1 CACATAGTAGCCTGCACAGAGTACTACACACGTGACCAT-AGCTATCTGGTA
* * *
44775749 CACATAGTAGCCTGCACATAGTACTACACACGTGATCGA-AGCTATCCGGTA
1 CACATAGTAGCCTGCACAGAGTACTACACACGTGA-CCATAGCTATCTGGTA
* * * * * * * *
44775800 CGCATAATAGCCTGCACATAGTACTACACATGGGACC-TATCTTTTTGGTA
1 CACATAGTAGCCTGCACAGAGTACTACACACGTGACCATAGCTATCTGGTA
* *
44775850 CACGTAGTAGCCTGCACGGAGTACTACACACGTGACCAT
1 CACATAGTAGCCTGCACAGAGTACTACACACGTGACCAT
44775889 CACTTTCTCT
Statistics
Matches: 114, Mismatches: 22, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
50 40 0.35
51 72 0.63
52 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (51 bp):
CACATAGTAGCCTGCACAGAGTACTACACACGTGACCATAGCTATCTGGTA
Found at i:44775879 original size:101 final size:101
Alignment explanation
Indices: 44775700--44775884 Score: 255
Period size: 101 Copynumber: 1.8 Consensus size: 101
44775690 TACCGGTTCA
* *
44775700 CATAGTAGCCTGCACAGAGTACTACACATGTGACCATCACTAACTGATACACATAGTAGCCTGCA
1 CATAATAGCCTGCACAGAGTACTACACATGGGACCAT-ACTAACTGATACACATAGTAGCCTGCA
*
44775765 CATAGTACTACACACGTGATCGAAGCTATCCGGTACG
65 CAGAGTACTACACACGTGATCGAAGCTATCCGGTACG
* *** * *
44775802 CATAATAGCCTGCACATAGTACTACACATGGGACC-TATCTTTTTGGTACACGTAGTAGCCTGCA
1 CATAATAGCCTGCACAGAGTACTACACATGGGACCATA-CTAACTGATACACATAGTAGCCTGCA
*
44775866 CGGAGTACTACACACGTGA
65 CAGAGTACTACACACGTGA
44775885 CCATCACTTT
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
100 1 0.01
101 39 0.54
102 32 0.44
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.23
Consensus pattern (101 bp):
CATAATAGCCTGCACAGAGTACTACACATGGGACCATACTAACTGATACACATAGTAGCCTGCAC
AGAGTACTACACACGTGATCGAAGCTATCCGGTACG
Found at i:44779830 original size:112 final size:112
Alignment explanation
Indices: 44779638--44779844 Score: 306
Period size: 112 Copynumber: 1.8 Consensus size: 112
44779628 TATGACGAGT
* * * ** *
44779638 TCATTAGACAAGCACTAGATAAGTAGCTTTCGTAATGGTATATAATAGGGAAAGCTCATTCATGG
1 TCATTAGACAACCACTAGATAAGTAGCTTTCATAATGGTATATAATAGAGAAAGCAAATTCATGA
* *
44779703 TACTTTATTATAATTCCTCCATGACTAAATAGTTTTGTATGATAAGG
66 TACTTTAGTAGAATTCCTCCATGACTAAATAGTTTTGTATGATAAGG
* *
44779750 TCATTAGACAACCACTAGATAAGTAGCTTTCATTATGGTATATAATAGAGAGAGCAAATTCATGA
1 TCATTAGACAACCACTAGATAAGTAGCTTTCATAATGGTATATAATAGAGAAAGCAAATTCATGA
* *
44779815 TACTTTGGTAGAATTCCTCCGTGACTAAAT
66 TACTTTAGTAGAATTCCTCCATGACTAAAT
44779845 GATCTGCCAT
Statistics
Matches: 83, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
112 83 1.00
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.33
Consensus pattern (112 bp):
TCATTAGACAACCACTAGATAAGTAGCTTTCATAATGGTATATAATAGAGAAAGCAAATTCATGA
TACTTTAGTAGAATTCCTCCATGACTAAATAGTTTTGTATGATAAGG
Found at i:44793404 original size:12 final size:12
Alignment explanation
Indices: 44793387--44793418 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
44793377 CCATTCCATT
44793387 GAGGAGTACCAA
1 GAGGAGTACCAA
44793399 GAGGAGTACCAA
1 GAGGAGTACCAA
*
44793411 GAAGAGTA
1 GAGGAGTA
44793419 AGTTGTGAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.44, C:0.12, G:0.34, T:0.09
Consensus pattern (12 bp):
GAGGAGTACCAA
Found at i:44798516 original size:27 final size:27
Alignment explanation
Indices: 44798436--44798767 Score: 352
Period size: 27 Copynumber: 12.3 Consensus size: 27
44798426 TGCGATTCGT
*
44798436 GGTAAAATTACTGAAATACCCTCGAAG
1 GGTAAAATTACTAAAATACCCTCGAAG
* *
44798463 GGTAAAATTAC-CAAATACCCTTGAAG
1 GGTAAAATTACTAAAATACCCTCGAAG
* *
44798489 GGTAAAATGACTAAAATACCCTCAAAG
1 GGTAAAATTACTAAAATACCCTCGAAG
* **
44798516 GGTAAAATGACCGAAATACCCTCGAAG
1 GGTAAAATTACTAAAATACCCTCGAAG
* *
44798543 GGTAAAATTA-TAAAAATATCCTCAAATG
1 GGTAAAATTACT-AAAATACCCTCGAA-G
* * *
44798571 GGTAAAATTA-TCGACATACCCCCGAAG
1 GGTAAAATTACT-AAAATACCCTCGAAG
* *
44798598 GGTAAAATTACTAAAATACCCCCAAAG
1 GGTAAAATTACTAAAATACCCTCGAAG
*
44798625 GGTAAAATTATTAAAATACCCTCGAAG
1 GGTAAAATTACTAAAATACCCTCGAAG
* *
44798652 GGTAAAATTACCAAAATACCCTCAAAG
1 GGTAAAATTACTAAAATACCCTCGAAG
*
44798679 GTTAAAATTA-TAGAAATACCCTC-AGAG
1 GGTAAAATTACTA-AAATACCCTCGA-AG
* *
44798706 GTTAAAATTA-TCGAAATACCCTCGAAG
1 GGTAAAATTACT-AAAATACCCTCGAAG
* * *
44798733 GCTAAAATTACCAAAATACCCCCGAAG
1 GGTAAAATTACTAAAATACCCTCGAAG
44798760 GGTAAAAT
1 GGTAAAAT
44798768 GACTGTTATA
Statistics
Matches: 259, Mismatches: 37, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
26 25 0.10
27 211 0.81
28 23 0.09
ACGTcount: A:0.44, C:0.19, G:0.15, T:0.21
Consensus pattern (27 bp):
GGTAAAATTACTAAAATACCCTCGAAG
Found at i:44798550 original size:54 final size:54
Alignment explanation
Indices: 44798436--44798767 Score: 393
Period size: 54 Copynumber: 6.1 Consensus size: 54
44798426 TGCGATTCGT
* * *
44798436 GGTAAAATTACTGAAATACCCTCGAAGGGTAAAATTACC-AAATACCCTTGAAG
1 GGTAAAATTACTAAAATACCCTCAAAGGGTAAAATTACCGAAATACCCTCGAAG
* *
44798489 GGTAAAATGACTAAAATACCCTCAAAGGGTAAAATGACCGAAATACCCTCGAAG
1 GGTAAAATTACTAAAATACCCTCAAAGGGTAAAATTACCGAAATACCCTCGAAG
* * * *
44798543 GGTAAAATTA-TAAAAATATCCTCAAATGGGTAAAATTATCGACATACCCCCGAAG
1 GGTAAAATTACT-AAAATACCCTCAAA-GGGTAAAATTACCGAAATACCCTCGAAG
* ***
44798598 GGTAAAATTACTAAAATACCCCCAAAGGGTAAAATTATTAAAATACCCTCGAAG
1 GGTAAAATTACTAAAATACCCTCAAAGGGTAAAATTACCGAAATACCCTCGAAG
* * **
44798652 GGTAAAATTACCAAAATACCCTCAAAGGTTAAAATTATAGAAATACCCTC-AGAG
1 GGTAAAATTACTAAAATACCCTCAAAGGGTAAAATTACCGAAATACCCTCGA-AG
* * * * * *
44798706 GTTAAAATTA-TCGAAATACCCTCGAAGGCTAAAATTACCAAAATACCCCCGAAG
1 GGTAAAATTACT-AAAATACCCTCAAAGGGTAAAATTACCGAAATACCCTCGAAG
44798760 GGTAAAAT
1 GGTAAAAT
44798768 GACTGTTATA
Statistics
Matches: 240, Mismatches: 32, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
53 37 0.15
54 155 0.65
55 47 0.20
56 1 0.00
ACGTcount: A:0.44, C:0.19, G:0.15, T:0.21
Consensus pattern (54 bp):
GGTAAAATTACTAAAATACCCTCAAAGGGTAAAATTACCGAAATACCCTCGAAG
Found at i:44798780 original size:81 final size:81
Alignment explanation
Indices: 44798436--44798772 Score: 401
Period size: 81 Copynumber: 4.2 Consensus size: 81
44798426 TGCGATTCGT
* * *
44798436 GGTAAAATTACTGAAATACCCTCGAAGGGTAAAATTA-CCAAATACCCTTGAAGGGTAAAATGAC
1 GGTAAAATTACTGAAATACCCTCGAAGGGTAAAATTATCAAAATACCCTCGAAGGGTAAAATTAC
* *
44798500 TAAAATACCCTCAAAG
66 CAAAATACCCCCAAAG
* * * * *
44798516 GGTAAAATGACCGAAATACCCTCGAAGGGTAAAATTATAAAAATATCCTCAAATGGGTAAAATTA
1 GGTAAAATTACTGAAATACCCTCGAAGGGTAAAATTATCAAAATACCCTCGAA-GGGTAAAATTA
* * * *
44798581 TCGACATACCCCCGAAG
65 CCAAAATACCCCCAAAG
* * * *
44798598 GGTAAAATTACTAAAATACCCCCAAAGGGTAAAATTATTAAAATACCCTCGAAGGGTAAAATTAC
1 GGTAAAATTACTGAAATACCCTCGAAGGGTAAAATTATCAAAATACCCTCGAAGGGTAAAATTAC
*
44798663 CAAAATACCCTCAAAG
66 CAAAATACCCCCAAAG
* * * *
44798679 GTTAAAATTA-TAGAAATACCCTC-AGAGGTTAAAATTATCGAAATACCCTCGAAGGCTAAAATT
1 GGTAAAATTACT-GAAATACCCTCGA-AGGGTAAAATTATCAAAATACCCTCGAAGGGTAAAATT
*
44798742 ACCAAAATACCCCCGAAG
64 ACCAAAATACCCCCAAAG
*
44798760 GGTAAAATGACTG
1 GGTAAAATTACTG
44798773 TTATACCCCC
Statistics
Matches: 214, Mismatches: 38, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
80 37 0.17
81 110 0.51
82 67 0.31
ACGTcount: A:0.44, C:0.19, G:0.15, T:0.21
Consensus pattern (81 bp):
GGTAAAATTACTGAAATACCCTCGAAGGGTAAAATTATCAAAATACCCTCGAAGGGTAAAATTAC
CAAAATACCCCCAAAG
Found at i:44799018 original size:26 final size:26
Alignment explanation
Indices: 44798970--44799019 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
44798960 TTGCTGCACT
* * * *
44798970 ATTATTATTGGTAGCTTTGCTACGTC
1 ATTATTACTGGCAGCTCTACTACGTC
44798996 ATTATTACTGGCAGCTCTACTACG
1 ATTATTACTGGCAGCTCTACTACG
44799020 AAATTGGTGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.40
Consensus pattern (26 bp):
ATTATTACTGGCAGCTCTACTACGTC
Found at i:44799693 original size:20 final size:20
Alignment explanation
Indices: 44799668--44799710 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
44799658 TTCCAAACTT
44799668 AAGAAACGAGTTTTATCAAC
1 AAGAAACGAGTTTTATCAAC
44799688 AAGAAACGAGTTTTATCAAC
1 AAGAAACGAGTTTTATCAAC
44799708 AAG
1 AAG
44799711 TCTAAGTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.47, C:0.14, G:0.16, T:0.23
Consensus pattern (20 bp):
AAGAAACGAGTTTTATCAAC
Found at i:44804575 original size:24 final size:24
Alignment explanation
Indices: 44804543--44804592 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
44804533 TATTTTTCCT
44804543 TGGTTCTTTATGGTAAAGTTGCCA
1 TGGTTCTTTATGGTAAAGTTGCCA
*
44804567 TGGTTCTTTATGGTAAAGTTGTCA
1 TGGTTCTTTATGGTAAAGTTGCCA
44804591 TG
1 TG
44804593 AATTTAACGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.20, C:0.10, G:0.26, T:0.44
Consensus pattern (24 bp):
TGGTTCTTTATGGTAAAGTTGCCA
Found at i:44809702 original size:346 final size:345
Alignment explanation
Indices: 44809068--44809757 Score: 1301
Period size: 346 Copynumber: 2.0 Consensus size: 345
44809058 TTAAACTGTA
44809068 GTTAACCCAACAATTTAGCATGAAGGACTTGGGAGAAGCTAAATTGTTCTAGGAATTTGAATCCT
1 GTTAACCCAACAATTTAGCATGAAGGACTTGGGAGAAGCTAAATTGTTCTAGGAATTTGAATCCT
44809133 AAGGGATTGAAAAAAAATTTTGATAGAATTATCACAAGTTTCATATATATAAGATATTAGAAGGT
66 AAGGGATTGAAAAAAAATTTTGATAGAATTATCACAAGTTTCATATATATAAGATATTAGAAGGT
*
44809198 TATGCAATGACCAAATCAAAAATAAGACACTGGCAAGAAGTTAACCAGTAGGAAATCTTATGTAC
131 TATGCAATGACCAAATCAAAAATAAGACACTGGCAAGAAGTTAACCAGTAGGAAATCTCATGTAC
44809263 GTTATGTTATGCTTCTACAGTAGGAAATCTCATGTACGTTATGTTATGCACATGTCCAGATATTT
196 GTTATGTTATGCTTCTACAGTAGGAAATCTCATGTACGTTATGTTATGCACATGTCCAGATATTT
* *
44809328 GTTTTGCAGTAGGGTTCGTGAGTTAATATCAGGCAAATTCAGGTTCAAGACACTGGCAAGAAGTT
261 GTTTTGCAGCAGGGTTCGTGAGTTAATATCAGGCAAATCCAGGTTCAAGACACTGGCAAGAAGTT
44809393 AACCATATACTCAAGTATTG
326 AACCATATACTCAAGTATTG
*
44809413 GTTAACCCAACAATTTAGCATGAAGGACTTGGGAGAAGCTAATTTGTTCTAGGAATTTGAATCCT
1 GTTAACCCAACAATTTAGCATGAAGGACTTGGGAGAAGCTAAATTGTTCTAGGAATTTGAATCCT
*
44809478 AAGGGATTGAAAGAAAATTTTGATAGAATTATCACAAGTTTCATATATATATAAGATATTAGAAG
66 AAGGGATTGAAAAAAAATTTTGATAGAATTATCACAAGTTTC--ATATATATAAGATATTAGAAG
*
44809543 GTTATGCAATGACCAAATCGAAAATAAGACACTGGCAAGAAGTT-ACCAGTAGGAAATCTCATGT
129 GTTATGCAATGACCAAATCAAAAATAAGACACTGGCAAGAAGTTAACCAGTAGGAAATCTCATGT
44809607 ACGTTATGTTATGCTTCTACAGTAGGAAATCTCATGTACGTTATGTTATGCACATGTCCAGATAT
194 ACGTTATGTTATGCTTCTACAGTAGGAAATCTCATGTACGTTATGTTATGCACATGTCCAGATAT
44809672 TTGTTTTGCAGCAGGGTTCGTGAGTTAATATCAGGCAAATCCAGGTTCAAGACACTGGCAAGAAG
259 TTGTTTTGCAGCAGGGTTCGTGAGTTAATATCAGGCAAATCCAGGTTCAAGACACTGGCAAGAAG
44809737 TTAACCATATACTCAAGTATT
324 TTAACCATATACTCAAGTATT
44809758 TACAGAGAAC
Statistics
Matches: 337, Mismatches: 6, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
345 105 0.31
346 168 0.50
347 64 0.19
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (345 bp):
GTTAACCCAACAATTTAGCATGAAGGACTTGGGAGAAGCTAAATTGTTCTAGGAATTTGAATCCT
AAGGGATTGAAAAAAAATTTTGATAGAATTATCACAAGTTTCATATATATAAGATATTAGAAGGT
TATGCAATGACCAAATCAAAAATAAGACACTGGCAAGAAGTTAACCAGTAGGAAATCTCATGTAC
GTTATGTTATGCTTCTACAGTAGGAAATCTCATGTACGTTATGTTATGCACATGTCCAGATATTT
GTTTTGCAGCAGGGTTCGTGAGTTAATATCAGGCAAATCCAGGTTCAAGACACTGGCAAGAAGTT
AACCATATACTCAAGTATTG
Found at i:44812689 original size:19 final size:19
Alignment explanation
Indices: 44812655--44812691 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
44812645 ATAGGAATTA
* *
44812655 GATTTGTGCTCTTTGGAAC
1 GATTTGTGCACCTTGGAAC
44812674 GATTTGTGCACCTTGGAA
1 GATTTGTGCACCTTGGAA
44812692 TGAATATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.19, C:0.16, G:0.27, T:0.38
Consensus pattern (19 bp):
GATTTGTGCACCTTGGAAC
Found at i:44815414 original size:9 final size:9
Alignment explanation
Indices: 44815400--44815425 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
44815390 CTAATATCAT
44815400 TTATAAAAA
1 TTATAAAAA
44815409 TTATAAAAA
1 TTATAAAAA
44815418 TTATAAAA
1 TTATAAAA
44815426 CCATTTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (9 bp):
TTATAAAAA
Found at i:44819711 original size:97 final size:98
Alignment explanation
Indices: 44819554--44819758 Score: 326
Period size: 97 Copynumber: 2.1 Consensus size: 98
44819544 ATGAAGATTT
* * *
44819554 TTTTAATAATAAAGGAAATATTTCGAGTTTGGGATTTTAAAGGAATTGTGTCCTAACGTATTGGG
1 TTTTAA-AGTAAAGGAAATATTTCGAGTTTGGGATTCTAAAGGAATCGTGTCCTAACGTATTGGG
*
44819619 TGTGATTTCTTAAATCTTGGATAAGTGGATGTTC
65 TCTGATTTCTTAAATCTTGGATAAGTGGATGTTC
44819653 TTTTAAAGTAAAGGAAATA-TTCTGAGTTTGGGATTCTAAAGG-ATCGTG-CCTTAACGTATTGG
1 TTTTAAAGTAAAGGAAATATTTC-GAGTTTGGGATTCTAAAGGAATCGTGTCC-TAACGTATTGG
44819715 GTCTGATTTCTTAAATCTTGGATAAGTGGATGTTC
64 GTCTGATTTCTTAAATCTTGGATAAGTGGATGTTC
44819750 TTTTAAAGT
1 TTTTAAAGT
44819759 TTTATTGTAC
Statistics
Matches: 100, Mismatches: 4, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
96 2 0.02
97 62 0.62
98 30 0.30
99 6 0.06
ACGTcount: A:0.29, C:0.08, G:0.23, T:0.40
Consensus pattern (98 bp):
TTTTAAAGTAAAGGAAATATTTCGAGTTTGGGATTCTAAAGGAATCGTGTCCTAACGTATTGGGT
CTGATTTCTTAAATCTTGGATAAGTGGATGTTC
Found at i:44831433 original size:44 final size:43
Alignment explanation
Indices: 44831150--44831663 Score: 238
Period size: 44 Copynumber: 11.8 Consensus size: 43
44831140 ATCGAAGATG
* * * *
44831150 GCAAGTCTTATCTCCATGAAGTTGCAGTGGAACAGATTAAAGCC
1 GCAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACT
* * * * *
44831194 GATAATCCTATCTCCCTGAAGTTGCAGTAGAGCGGATGAAAACCT
1 G-CAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAA-CT
* * * *** *
44831239 -CAGATCTTATCTCTCTGAAGTTGTAG-AGAGCAGATCGCATCT
1 GCA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACT
* * * * * * *
44831281 --AGTCATATC-CTCCTGAGGTTGTAGTGGAGCATACTACGTAA--
1 GCAATCTTATCTC-CCTGAAGTTGCAGTGGAGCAGATTA--AAACT
* * * *
44831322 GCAAGTTTTATC-CTCCTGAAGTTGTAGT-GAGGCAGACTGAAGA-T
1 GCAA-TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TTAAAACT
* *
44831366 GGCAAATCTTATCTCCCTCAAGTTACAGTGGAGCAGATTAAAACT
1 -GC-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACT
* * *
44831411 GACAATCCTATCTCCCTGAAGTTGCGGTGGAGCGGATTAAAATCT
1 G-CAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAA-CT
* * *** *
44831456 -CAGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGATCGCATCT
1 GCA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACT
* *
44831498 --AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAA--
1 GCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA--AACT
* * *
44831539 GCAAGTCTTATCTTCCTGAAGTTGCAGT-GAGACAGACTGAAGA-T
1 GCAA-TCTTATCTCCCTGAAGTTGCAGTGGAG-CAGA-TTAAAACT
* * *
44831583 GGCAAAACTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCC
1 -GC-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACT
* *
44831628 GACAAT-TCTATCTCCCTCAAGTTGTAGTGGAGCAGA
1 G-CAATCT-TATCTCCCTGAAGTTGCAGTGGAGCAGA
44831664 CTAATGAGGC
Statistics
Matches: 354, Mismatches: 80, Indels: 72
0.70 0.16 0.14
Matches are distributed among these distances:
39 1 0.00
40 38 0.11
41 15 0.04
42 4 0.01
43 32 0.09
44 192 0.54
45 62 0.18
46 10 0.03
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (43 bp):
GCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACT
Found at i:44831526 original size:217 final size:217
Alignment explanation
Indices: 44831143--44831660 Score: 786
Period size: 217 Copynumber: 2.4 Consensus size: 217
44831133 GGAGCAGATC
* * * *
44831143 GAAGATGGCAAGTCTTATCTCCATGAAGTTGCAGTGGAACAGATTAAAGCCGATAATCCTATCTC
1 GAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGACAATCCTATCTC
* *
44831208 CCTGAAGTTGCAGTAGAGCGGATGAAAACCTCAGATCTTATCTCTCTGAAGTTGTAGAGAGCAGA
66 CCTGAAGTTGCAGTGGAGCGGATGAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
* * * * *
44831273 TCGCATCTAGTCATATCCTCCTGAGGTTGTAGTGGAGCATACTACGTAAGCAAGTTTTATCCTCC
131 TCGCATCTAGTCATATCCTCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCC
* *
44831338 TGAAGTTGTAGTGAGGCAGACT
196 TGAAGTTGCAGTGAGACAGACT
* * * *
44831360 GAAGATGGCAAATCTTATCTCCCTCAAGTTACAGTGGAGCAGATTAAAACTGACAATCCTATCTC
1 GAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGACAATCCTATCTC
* * *
44831425 CCTGAAGTTGCGGTGGAGCGGATTAAAATCTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
66 CCTGAAGTTGCAGTGGAGCGGATGAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
* *
44831490 TCGCATCTAGTCTTAT-CTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCTTC
131 TCGCATCTAGTCATATCCT-CCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTC
44831554 CTGAAGTTGCAGTGAGACAGACT
195 CTGAAGTTGCAGTGAGACAGACT
* *
44831577 GAAGATGGCAAAACTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGACAATTCTATCTC
1 GAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGACAATCCTATCTC
* *
44831642 CCTCAAGTTGTAGTGGAGC
66 CCTGAAGTTGCAGTGGAGC
44831661 AGACTAATGA
Statistics
Matches: 269, Mismatches: 31, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
216 2 0.01
217 267 0.99
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (217 bp):
GAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGACAATCCTATCTC
CCTGAAGTTGCAGTGGAGCGGATGAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
TCGCATCTAGTCATATCCTCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCC
TGAAGTTGCAGTGAGACAGACT
Found at i:44831548 original size:84 final size:87
Alignment explanation
Indices: 44831419--44831624 Score: 210
Period size: 84 Copynumber: 2.4 Consensus size: 87
44831409 CTGACAATCC
* * * * *
44831419 TATCTCCCTGAAGTTGCGGTGGAGCGGATTAAAATCTCAGATCTTATC-TCTCTGAAGTTGCAGA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGCTAAGATCTTATCTTC-CTGAAGTTGCAGA
* **
44831483 GAG-CAGA-TCG-CAT-CTAGTCT
65 GAGACAGACT-GACATGCAAAACT
44831503 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGC-AAG-TCTTATCTTCCTGAAGTTGCAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAA--AAGCTAAGATCTTATCTTCCTGAAGTTGCAG
* *
44831566 TGAGACAGACTGAAGATGGCAAAACT
64 AGAGACAGACTG-ACAT-GCAAAACT
*
44831592 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAA
44831625 GCCGACAATT
Statistics
Matches: 102, Mismatches: 11, Indels: 15
0.80 0.09 0.12
Matches are distributed among these distances:
84 51 0.50
85 9 0.09
86 4 0.04
87 3 0.03
89 35 0.34
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (87 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGCTAAGATCTTATCTTCCTGAAGTTGCAGAG
AGACAGACTGACATGCAAAACT
Found at i:44831640 original size:89 final size:89
Alignment explanation
Indices: 44831501--44831665 Score: 219
Period size: 89 Copynumber: 1.9 Consensus size: 89
44831491 CGCATCTAGT
* * *
44831501 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCTTCCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAGCAAGTCTTATCTCCCTCAAGTTGCAG
44831566 T-GAGACAGACTGAAGATGGCAAAA
66 TGGAG-CAGACTGAAGATGGCAAAA
* * * *
44831590 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC-CGACAATTC-TATCTCCCTCAAGTTGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGCAAG-CAAGTCTTATCTCCCTCAAGTTGC
44831653 AGTGGAGCAGACT
64 AGTGGAGCAGACT
44831666 AATGAGGCAG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
89 55 0.83
90 11 0.17
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (89 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAGCAAGTCTTATCTCCCTCAAGTTGCAG
TGGAGCAGACTGAAGATGGCAAAA
Found at i:44833963 original size:98 final size:98
Alignment explanation
Indices: 44833834--44834039 Score: 369
Period size: 98 Copynumber: 2.1 Consensus size: 98
44833824 ATGAAGATTT
* *
44833834 TTTTAATAATAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAAT-TGTGCCCTAACGTATTGG
1 TTTTAA-AGTAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCT-TGCCCTAACGTATTGG
44833898 GTGTGATTTCTTAAATCTTGGATAAGTGGATGTTC
64 GTGTGATTTCTTAAATCTTGGATAAGTGGATGTTC
44833933 TTTTAAAGTAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCTTGCCCTAACGTATTGGGT
1 TTTTAAAGTAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCTTGCCCTAACGTATTGGGT
44833998 GTGATTTCTTAAATCTTGGATAAGTGGATGTTC
66 GTGATTTCTTAAATCTTGGATAAGTGGATGTTC
44834031 TTTTAAAGT
1 TTTTAAAGT
44834040 TTTATTGTAC
Statistics
Matches: 104, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
98 97 0.93
99 7 0.07
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.38
Consensus pattern (98 bp):
TTTTAAAGTAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCTTGCCCTAACGTATTGGGT
GTGATTTCTTAAATCTTGGATAAGTGGATGTTC
Found at i:44838628 original size:105 final size:104
Alignment explanation
Indices: 44838414--44838631 Score: 233
Period size: 105 Copynumber: 2.1 Consensus size: 104
44838404 GTGTGTCAGC
* * *
44838414 CCGTGTGAAAACTTCACCTATACTGTTTTGAAACACATTTAGGGTACACGCCCGTGTGAGTTGCC
1 CCGTGTGAAAACTTCACCTATACTGTTTTGAAACACATTCAGGGCACACGCCCATGTGAGTTGCC
* * * **
44838479 TGTGCATATCACACGATCGTGTGACAGCCCATGACCCAGG
66 TGTGCA-ATCACACGACCGAGTAACAGCCCATGACCCAAA
* * * * *
44838519 CCGTGTGAAAACTAT-ATCTATATTGTTTTGAAACACGTTCAGGGCACAGGCCCATGTGTGTTGC
1 CCGTGTGAAAACT-TCACCTATACTGTTTTGAAACACATTCAGGGCACACGCCCATGTGAGTTG-
* * * *
44838583 CCGTGTGC-ATCACACGACCGAGTAATAGTCCGTGTCCCAAA
64 CC-TGTGCAATCACACGACCGAGTAACAGCCCATGACCCAAA
44838624 CCGTGTGA
1 CCGTGTGA
44838632 GCACAAAAAT
Statistics
Matches: 93, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
105 85 0.91
106 3 0.03
107 5 0.05
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (104 bp):
CCGTGTGAAAACTTCACCTATACTGTTTTGAAACACATTCAGGGCACACGCCCATGTGAGTTGCC
TGTGCAATCACACGACCGAGTAACAGCCCATGACCCAAA
Found at i:44842261 original size:30 final size:30
Alignment explanation
Indices: 44842220--44842282 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
44842210 ACTTATTTTA
*
44842220 TTGTTACTTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
* *
44842250 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
44842280 TTG
1 TTG
44842283 CTTATTAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.24, C:0.05, G:0.14, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:44843879 original size:20 final size:20
Alignment explanation
Indices: 44843856--44843917 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 20
44843846 GTTTTTAGAT
44843856 AATTATG-TTTATTTTCTTTA
1 AATTATGATTTATTTT-TTTA
* *
44843876 AATTAAGAGTTATTTTTTTA
1 AATTATGATTTATTTTTTTA
*
44843896 ACTTCATGATTTATTTATTTTA
1 AATT-ATGATTTATTT-TTTTA
44843918 TTATTTTCCA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
20 13 0.38
21 16 0.47
22 5 0.15
ACGTcount: A:0.29, C:0.05, G:0.06, T:0.60
Consensus pattern (20 bp):
AATTATGATTTATTTTTTTA
Found at i:44852263 original size:16 final size:17
Alignment explanation
Indices: 44852234--44852265 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
44852224 AATTTTAGGG
44852234 GGAAAATAAAAAGTTTT
1 GGAAAATAAAAAGTTTT
44852251 GGAAAAT-AAAAGTTT
1 GGAAAATAAAAAGTTT
44852266 GAGGGAAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.53, C:0.00, G:0.19, T:0.28
Consensus pattern (17 bp):
GGAAAATAAAAAGTTTT
Found at i:44852582 original size:30 final size:31
Alignment explanation
Indices: 44852521--44852579 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
44852511 GAGGTTGGGA
* **
44852521 TGGGAAGAGAGTAAAAGTTTTGATTAGAAAG
1 TGGGAAGAGAGTAAAAATTTTGAGGAGAAAG
44852552 TGGGAAG-GAGTAAAAATTTTGAGG-GAAA
1 TGGGAAGAGAGTAAAAATTTTGAGGAGAAA
44852580 AGTAAAAAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 4 0.16
30 14 0.56
31 7 0.28
ACGTcount: A:0.42, C:0.00, G:0.34, T:0.24
Consensus pattern (31 bp):
TGGGAAGAGAGTAAAAATTTTGAGGAGAAAG
Found at i:44857923 original size:25 final size:28
Alignment explanation
Indices: 44857881--44857931 Score: 72
Period size: 25 Copynumber: 1.9 Consensus size: 28
44857871 ACTTTCTTTT
*
44857881 TATAAATTGTTTATAATTTTT-TAAAAA
1 TATAAATTGTTTAGAATTTTTATAAAAA
44857908 TATAAA-T-TTTAGAATTTTTATAAA
1 TATAAATTGTTTAGAATTTTTATAAA
44857932 TATTTTGATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 11 0.50
26 5 0.23
27 6 0.27
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (28 bp):
TATAAATTGTTTAGAATTTTTATAAAAA
Found at i:44858716 original size:27 final size:27
Alignment explanation
Indices: 44858686--44858739 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
44858676 CTTGCGGGGG
*
44858686 ATGTTAGTTTTCGAGTTTCGTTACCAC
1 ATGTTAGTTTCCGAGTTTCGTTACCAC
*
44858713 ATGTTAGTTTCCGGGTTTCGTTACCAC
1 ATGTTAGTTTCCGAGTTTCGTTACCAC
44858740 CCGTTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.17, C:0.20, G:0.20, T:0.43
Consensus pattern (27 bp):
ATGTTAGTTTCCGAGTTTCGTTACCAC
Found at i:44864941 original size:17 final size:17
Alignment explanation
Indices: 44864919--44864970 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 17
44864909 ATGGAAACAT
* *
44864919 AATCTTCAAGGATATGC
1 AATCTTGAAAGATATGC
*
44864936 AATCTTAGATATGATATGC
1 AATCTT-GA-AAGATATGC
44864955 AATCTTGAAAGATATG
1 AATCTTGAAAGATATG
44864971 ATTTTGTAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 13 0.43
18 3 0.10
19 14 0.47
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (17 bp):
AATCTTGAAAGATATGC
Found at i:44864989 original size:22 final size:22
Alignment explanation
Indices: 44864929--44864972 Score: 67
Period size: 19 Copynumber: 2.1 Consensus size: 22
44864919 AATCTTCAAG
44864929 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTGAAAGATAT
44864948 GATATGCAATCTTGAAAGATAT
1 GATATGCAATCTTGAAAGATAT
44864970 GAT
1 GAT
44864973 TTTGTAATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 13 0.59
22 9 0.41
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.34
Consensus pattern (22 bp):
GATATGCAATCTTGAAAGATAT
Found at i:44870543 original size:6 final size:6
Alignment explanation
Indices: 44870532--44870569 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
44870522 AAAAAAAAAG
*
44870532 AAAGAA AAAGAA AAAG-C AAAGAA AAAG-A AAAGAA AAAG
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAG
44870570 GAGAGGCCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
5 9 0.32
6 19 0.68
ACGTcount: A:0.79, C:0.03, G:0.18, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:44870545 original size:17 final size:18
Alignment explanation
Indices: 44870525--44870562 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
44870515 ATATTCCAAA
44870525 AAAAAAG-AAAGAAAAAG
1 AAAAAAGCAAAGAAAAAG
44870542 -AAAAAGCAAAGAAAAAG
1 AAAAAAGCAAAGAAAAAG
44870559 AAAA
1 AAAA
44870563 GAAAAAGGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 6 0.32
17 10 0.53
18 3 0.16
ACGTcount: A:0.82, C:0.03, G:0.16, T:0.00
Consensus pattern (18 bp):
AAAAAAGCAAAGAAAAAG
Found at i:44870569 original size:11 final size:11
Alignment explanation
Indices: 44870522--44870569 Score: 64
Period size: 11 Copynumber: 4.5 Consensus size: 11
44870512 AAAATATTCC
44870522 AAAAA-AAAAG
1 AAAAAGAAAAG
*
44870532 AAAGA-AAAAG
1 AAAAAGAAAAG
*
44870542 AAAAAGCAAAG
1 AAAAAGAAAAG
44870553 AAAAAGAAAAG
1 AAAAAGAAAAG
44870564 AAAAAG
1 AAAAAG
44870570 GAGAGGCCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
10 13 0.39
11 20 0.61
ACGTcount: A:0.81, C:0.02, G:0.17, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:44870569 original size:17 final size:16
Alignment explanation
Indices: 44870522--44870566 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
44870512 AAAATATTCC
44870522 AAAA-AAAAAGAAAGA
1 AAAAGAAAAAGAAAGA
44870537 AAAAGAAAAAGCAAAGA
1 AAAAGAAAAAG-AAAGA
44870554 AAAAG-AAAAGAAA
1 AAAAGAAAAAGAAA
44870567 AAGGAGAGGC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.25
16 11 0.39
17 10 0.36
ACGTcount: A:0.82, C:0.02, G:0.16, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAAGAAAGA
Found at i:44871963 original size:88 final size:88
Alignment explanation
Indices: 44871810--44872688 Score: 1033
Period size: 88 Copynumber: 10.1 Consensus size: 88
44871800 GAAATCACAA
* *
44871810 AGCCTTGCCTCCCTGGGTTGTAGTGGAGTAGGTTGAATATAACAGATCTTGCCTTCCTGCATCGA
1 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAATATAGCAGATCTTGCCTTCCTGCATCGA
*
44871875 CAACTCAGCAGATCGAAGATACC
66 CAACTAAGCAGATCGAAGATACC
*
44871898 AGCGTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAATATAGCAGATCTTGCCTTCCTGCATCGA
1 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAATATAGCAGATCTTGCCTTCCTGCATCGA
* * *
44871963 CAGCGAAGCAGTTCGAAGATACC
66 CAACTAAGCAGATCGAAGATACC
*
44871986 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAATATTAACAGATCTTGCCTTCCTGCATCG
1 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAATA-TAGCAGATCTTGCCTTCCTGCATCG
* *
44872051 ACAGCGAAGCAGATCGAAGATACC
65 ACAACTAAGCAGATCGAAGATACC
*
44872075 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCA-G--G--T-T-----ATCTTGCCTTCCTGTATCGA
1 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAATATAGCAGATCTTGCCTTCCTGCATCGA
* * * *
44872129 CAGCGAAGCAGATTGAAGGTACC
66 CAACTAAGCAGATCGAAGATACC
* * * *
44872152 AGTCTTGCCTCCTTGGGTTGTAGTGGAGCAGGTTGAATATAGCAGATCTTGCCTTCTTGCATTGA
1 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAATATAGCAGATCTTGCCTTCCTGCATCGA
* *
44872217 CAGCGAAGCAGATCGAAGATACC
66 CAACTAAGCAGATCGAAGATACC
* * * * *
44872240 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTAAAAATAGCAGATCTTGTCTTCCTGTACCGA
1 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAATATAGCAGATCTTGCCTTCCTGCATCGA
* *
44872305 C-AGTGAAGCAGATCGAAGATTCC
66 CAACT-AAGCAGATCGAAGATACC
* *
44872328 AGCCTTGCCTCCCTGGGTTGTAGTAGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATCGA
1 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAATATAGCAGATCTTGCCTTCCTGCATCGA
*
44872393 CAA-TGAAGCAGATCAAAGATACC
66 CAACT-AAGCAGATCGAAGATACC
* * *
44872416 AGCCTTG---CCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGTAGATCTTGCCTTCCTGTA-CTG
1 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAATATAGCAGATCTTGCCTTCCTGCATC-G
* *
44872477 A-AAGTGAAGTAGATCGAAGATACC
65 ACAACT-AAGCAGATCGAAGATACC
* * ** * * * *
44872501 AACCTTGCCTCCCTGGATCATAGTTGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTACCGA
1 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAATATAGCAGATCTTGCCTTCCTGCATCGA
*
44872566 C-AGTGAAGCAGATCGAAGATACC
66 CAACT-AAGCAGATCGAAGATACC
* * * ** * * * *
44872589 ATCCTTGCCTCCCTGGGTTGTAGTGAAGTAGGTTGAAGGTAGTAGATCTTGCCTTCCTGTACCAA
1 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAATATAGCAGATCTTGCCTTCCTGCATCGA
* * *
44872654 C-AGTGAAACAGATCAAAGATACC
66 CAACT-AAGCAGATCGAAGATACC
*
44872677 AGTCTTGCCTCC
1 AGCCTTGCCTCC
44872689 TTAGGTTATC
Statistics
Matches: 703, Mismatches: 67, Indels: 42
0.87 0.08 0.05
Matches are distributed among these distances:
77 68 0.10
78 1 0.00
80 1 0.00
82 2 0.00
83 1 0.00
84 4 0.01
85 74 0.11
86 1 0.00
88 472 0.67
89 79 0.11
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (88 bp):
AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAATATAGCAGATCTTGCCTTCCTGCATCGA
CAACTAAGCAGATCGAAGATACC
Found at i:44872532 original size:261 final size:262
Alignment explanation
Indices: 44872109--44872685 Score: 834
Period size: 261 Copynumber: 2.2 Consensus size: 262
44872099 GGAGCAGGTT
* ** *
44872109 ATCTTGCCTTCCTGTATCGACAGCGAAGCAGATTGAAGGTACCAGTCTTGCCTCCTTGGGTTGTA
1 ATCTTGCCTTCCTGTATCGACAGTGAAGCAGATCAAAGATACCAGTCTTG-C-CCTTGGGTTGTA
* * * *
44872174 GTGGAGCAGGTTGAATATAGCAGATCTTGCCTTCTTGCATTGACAGCGAAGCAGATCGAAGATAC
64 GTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCACTGAAAGCGAAGCAGATCGAAGATAC
* * ** *
44872239 CAGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTAAAAATAGCAGATCTTGTCTTCCTGTACCG
129 CAACCTTGCCTCCCTGGATCATAGTGGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGTACCG
*
44872304 ACAGTGAAGCAGATCGAAGATTCCAGCCTTGCCTCCCTGGGTTGTAGT-AGAGCAGGTTGAAGAT
194 ACAGTGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTGGGTTGTAGTGA-AGCAGGTTGAAGAT
44872368 AGCAG
258 AGCAG
* * *
44872373 ATCTTGCCTTCCTGCATCGACAATGAAGCAGATCAAAGATACCAGCCTTGCCC-TGGGTTGTAGT
1 ATCTTGCCTTCCTGTATCGACAGTGAAGCAGATCAAAGATACCAGTCTTGCCCTTGGGTTGTAGT
* * * *
44872437 GGAGCAGGTTGAAGATAGTAGATCTTGCCTTCCTGTACTGAAAGTGAAGTAGATCGAAGATACCA
66 GGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCACTGAAAGCGAAGCAGATCGAAGATACCA
* * *
44872502 ACCTTGCCTCCCTGGATCATAGTTGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTACCGAC
131 ACCTTGCCTCCCTGGATCATAGTGGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGTACCGAC
* * * *
44872567 AGTGAAGCAGATCGAAGATACCATCCTTGCCTCCCTGGGTTGTAGTGAAGTAGGTTGAAGGTAGT
196 AGTGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTGGGTTGTAGTGAAGCAGGTTGAAGATAGC
44872632 AG
261 AG
* * *
44872634 ATCTTGCCTTCCTGTACCAACAGTGAAACAGATCAAAGATACCAGTCTTGCC
1 ATCTTGCCTTCCTGTATCGACAGTGAAGCAGATCAAAGATACCAGTCTTGCC
44872686 TCCTTAGGTT
Statistics
Matches: 278, Mismatches: 34, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
261 231 0.83
262 3 0.01
263 1 0.00
264 43 0.15
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (262 bp):
ATCTTGCCTTCCTGTATCGACAGTGAAGCAGATCAAAGATACCAGTCTTGCCCTTGGGTTGTAGT
GGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCACTGAAAGCGAAGCAGATCGAAGATACCA
ACCTTGCCTCCCTGGATCATAGTGGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGTACCGAC
AGTGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTGGGTTGTAGTGAAGCAGGTTGAAGATAGC
AG
Found at i:44872853 original size:133 final size:133
Alignment explanation
Indices: 44872699--44873114 Score: 448
Period size: 133 Copynumber: 3.1 Consensus size: 133
44872689 TTAGGTTATC
*
44872699 GTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAATAGATCGAAGATAGC
1 GTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGC
* * * *
44872764 AGATCTTGTCTTCCCATACTGGTGGCGT-AGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
66 AGATCTTGTCTT-CCAT-CTAGTGGCGTAAGTAGATCGAAGAAAGCAGATCCTGTCTTCATATAC
44872828 TGG-A
129 TGGTA
* * *
44872832 GTGAAGTAGATCAAAGATAGCAGATCTTGTTTTCATGTATTGGCGTGAAGTAGATCAAAGATAAC
1 GTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGC
* * * * *
44872897 AAATCTTGTCTT-CATGTATTGGCGTGAAGTAGATCGAAGAGAGCAGATCCTGTCTTCCTATACT
66 AGATCTTGTCTTCCATCTAGTGGCGT-AAGTAGATCGAAGAAAGCAGATCCTGTCTTCATATACT
*
44872961 GGTG
130 GGTA
* * * * *
44872965 GCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGC--GAAGTAGATCGAAGAAAGC
1 GTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGC
* * ** * * * * ** * **
44873028 AGATCTTATCTT-CATGTACCGGCATGAAATAGACCAAAGGTAGCAGATCTTGTCTTCCCATACT
66 AGATCTTGTCTTCCATCTAGTGGCGT-AAGTAGATCGAAGAAAGCAGATCCTGTCTTCATATACT
*
44873092 GGTG
130 GGTA
*
44873096 GTGAAGTAGATCGAAGATA
1 GTGAAGTAGATCAAAGATA
44873115 CAAGTTTTAT
Statistics
Matches: 244, Mismatches: 36, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
130 7 0.03
131 92 0.38
132 34 0.14
133 111 0.45
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (133 bp):
GTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGC
AGATCTTGTCTTCCATCTAGTGGCGTAAGTAGATCGAAGAAAGCAGATCCTGTCTTCATATACTG
GTA
Found at i:44872894 original size:177 final size:175
Alignment explanation
Indices: 44872698--44873084 Score: 585
Period size: 177 Copynumber: 2.2 Consensus size: 175
44872688 CTTAGGTTAT
*
44872698 CGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAATAGATCGAAGATAG
1 CGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAATAGATCGAAGAGAG
* *
44872763 CAGATCTTGTCTTCCCATACTGGTGGCGTAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
66 CAGATCCTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
* * * * **
44872828 TGGAGTGAAGTAGATCAAAGATAGCAGATCTTGTTTTCATGTATTGG
131 T-G-GCGAAGTAGATCAAAGAAAGCAGATCTTATCTTCATGTACCGG
* * *
44872875 CGTGAAGTAGATCAAAGATAACAAATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAGAG
1 CGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAATAGATCGAAGAGAG
* *
44872940 CAGATCCTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTAT
66 CAGATCCTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
*
44873005 TGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTACCGG
131 TGGCGAAGTAGATCAAAGAAAGCAGATCTTATCTTCATGTACCGG
* * * *
44873050 CATGAAATAGACCAAAGGTAGCAGATCTTGTCTTC
1 CGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTC
44873085 CCATACTGGT
Statistics
Matches: 189, Mismatches: 21, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
175 65 0.34
176 1 0.01
177 123 0.65
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (175 bp):
CGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAATAGATCGAAGAGAG
CAGATCCTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
TGGCGAAGTAGATCAAAGAAAGCAGATCTTATCTTCATGTACCGG
Found at i:44873084 original size:44 final size:44
Alignment explanation
Indices: 44872698--44873114 Score: 446
Period size: 44 Copynumber: 9.5 Consensus size: 44
44872688 CTTAGGTTAT
*
44872698 CGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGG
1 CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG
* * **
44872742 CGTGAAATAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGG
1 CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTT--CAT-GTATTGG
*
44872789 CGT--AGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG
1 CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG
* * *
44872831 AGTGAAGTAGATCAAAGATAGCAGATCTTGTTTTCATGTATTGG
1 CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG
* * *
44872875 CGTGAAGTAGATCAAAGATAACAAATCTTGTCTTCATGTATTGG
1 CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG
* * * * *
44872919 CGTGAAGTAGATCGAAGAGAGCAGATCCTGTCTTCCTATACTGG
1 CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG
* * * *
44872963 TGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGG
1 -CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG
* * **
44873008 C--GAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTACCGG
1 CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG
* * * * * *** *
44873050 CATGAAATAGACCAAAGGTAGCAGATCTTGTCTTCCCATACTGG
1 CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG
*
44873094 TGGTGAAGTAGATCGAAGATA
1 -CGTGAAGTAGATCGAAGATA
44873115 CAAGTTTTAT
Statistics
Matches: 309, Mismatches: 55, Indels: 17
0.81 0.14 0.04
Matches are distributed among these distances:
42 44 0.14
43 3 0.01
44 175 0.57
45 77 0.25
46 3 0.01
47 7 0.02
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (44 bp):
CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG
Found at i:44873464 original size:21 final size:19
Alignment explanation
Indices: 44873418--44873492 Score: 123
Period size: 19 Copynumber: 3.8 Consensus size: 19
44873408 AATCTTCAAG
*
44873418 GATATGCAATCTTAGATAT
1 GATATGCAATCTTGGATAT
44873437 GATATGCAATCTTGGATAT
1 GATATGCAATCTTGGATAT
44873456 GATATATGCAATCTTGGATAT
1 G--ATATGCAATCTTGGATAT
44873477 GATATGCAATCTTGGA
1 GATATGCAATCTTGGA
44873493 AGATATGATT
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
19 34 0.64
21 19 0.36
ACGTcount: A:0.33, C:0.11, G:0.20, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTGGATAT
Found at i:44884784 original size:19 final size:20
Alignment explanation
Indices: 44884760--44884800 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
44884750 TTAATTGATA
44884760 ATGTAATTATT-TTATATAT
1 ATGTAATTATTCTTATATAT
* *
44884779 ATGTAATTTTTCTTATCTAT
1 ATGTAATTATTCTTATATAT
44884799 AT
1 AT
44884801 ATGCATATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.59
Consensus pattern (20 bp):
ATGTAATTATTCTTATATAT
Found at i:44885268 original size:15 final size:15
Alignment explanation
Indices: 44885248--44885282 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
44885238 TTTCTATGAG
44885248 ATTGTTATATTTATT
1 ATTGTTATATTTATT
*
44885263 ATTGTTGTATTTATT
1 ATTGTTATATTTATT
44885278 ATTGT
1 ATTGT
44885283 GGCATATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.11, T:0.66
Consensus pattern (15 bp):
ATTGTTATATTTATT
Found at i:44896301 original size:25 final size:26
Alignment explanation
Indices: 44896254--44896302 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
44896244 CAGAATTTTT
44896254 TTGTTCTTGTAATATTTTATTCTTCA
1 TTGTTCTTGTAATATTTTATTCTTCA
44896280 TTGTTCTTG-AATATCTTT-TTCTT
1 TTGTTCTTGTAATAT-TTTATTCTT
44896303 TTCAAGACAC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.16, C:0.12, G:0.08, T:0.63
Consensus pattern (26 bp):
TTGTTCTTGTAATATTTTATTCTTCA
Found at i:44897269 original size:133 final size:130
Alignment explanation
Indices: 44896967--44897715 Score: 794
Period size: 133 Copynumber: 5.7 Consensus size: 130
44896957 CTAAAAAAAA
* * *
44896967 AGCAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATA
1 AGCAGATCTTGTCTTCCTGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCCATA
* *
44897032 -T--TAGCGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAA
66 TTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCAATA-T--TGGCGAAGTAGATCGAA
*
44897094 GAA
128 GAT
* * ** *
44897097 AGCAGATCTTGTCTTCATGTATCGGCGTGAAGTAGATCGAAGATAATAGATCCTGTCTTCCTATA
1 AGCAGATCTTGTCTTCCTGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCCATA
*
44897162 TTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGCCTT-CAAGTATTGGCATGAAGTAGATCGAA
66 TTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCAA-TATTGGC--GAAGTAGATCGAA
44897226 GAT
128 GAT
* * * *
44897229 AGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCAT
1 AGCAGATCTTGTCTTCCTGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCCAT
* * * * * *
44897293 ACTGGTGGCGAAATAGATCGAAGAAAGCAGATCTTGTCTT-CATGTATTGGCGTGAAGTAGATCG
65 ATTGGTAGCGAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCA-ATATTGGC--GAAGTAGATCG
44897357 AAGAT
126 AAGAT
* * ** * * *
44897362 AACAGATCTTGTCTTCCTATATTAGTAGCGAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCAT
1 AGCAGATCTTGTCTTCCTGTATT-GGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCCAT
* * * * * *
44897426 ATTGGTGGCGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCG
65 ATTGGTAGCGAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCAATATT-G--GCGAAGTAGATCG
44897491 AAGAT
126 AAGAT
* * *
44897496 A-CAGATCTTATCTTCCCGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCAATA
1 AGCAGATCTTGTCTTCCTGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCCATA
*
44897560 TTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAA
66 TTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCAATA-T--TGGCGAAGTAGATCGAA
*
44897625 GAA
128 GAT
* * * * * * * *
44897628 AGCAGATCTTATCTACATGTATTGGCGTGAAGTAGATCAAAAATAGCAGATCTTGCCTTCCTATA
1 AGCAGATCTTGTCTTCCTGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCCATA
* * * **
44897693 CTGGCAGTGAAGCAGATCGAAGA
66 TTGGTAGCGAAGTGGATCGAAGA
44897716 CGTTAGTCTT
Statistics
Matches: 534, Mismatches: 65, Indels: 37
0.84 0.10 0.06
Matches are distributed among these distances:
130 65 0.12
131 1 0.00
132 126 0.24
133 319 0.60
134 20 0.04
135 1 0.00
136 2 0.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (130 bp):
AGCAGATCTTGTCTTCCTGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCCATA
TTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCAATATTGGCGAAGTAGATCGAAGAT
Found at i:44897377 original size:221 final size:221
Alignment explanation
Indices: 44896968--44897715 Score: 988
Period size: 221 Copynumber: 3.4 Consensus size: 221
44896958 TAAAAAAAAA
* *
44896968 GCAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATA-
1 GCAGATCTTGTCTTCAAGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATAT
*
44897032 T--TAGCGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAG
66 TGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAG
* * *
44897095 AAAGCAGATCTTGTCTTCATGTATCGGCGTGAAGTAGATCGAAGATAATAGATCCTGTCTTCCTA
131 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTA
44897160 TATTGGTAGCGAAGTGGATCGAAGAT
196 TATTGGTAGCGAAGTGGATCGAAGAT
* * *
44897186 GCAGATCTTGCCTTCAAGTATTGGCATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATAT
1 GCAGATCTTGTCTTCAAGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATAT
* *
44897251 TGGTAGTGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAATAGATCGAAG
66 TGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAG
44897316 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTA
131 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTA
*
44897381 TATTAGTAGCGAAGTGGATCGAAGAT
196 TATTGGTAGCGAAGTGGATCGAAGAT
* * * *
44897407 GCAGATCTTGTCTTCCCA-TATTGGTGGCGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTAT
1 GCAGATCTTGTCTT-CAAGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTAT
* * * * * *
44897471 ATTGGTAGCGAAGTGGATCGAAGATACAGATCTTATCTTCCCGTATTGG-CGTGAAGTAGATCGA
64 ATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGA
* * * * * * *
44897535 AGATAGCAGATCCTGTCTTCCA-ATATTGGTAGCGAAGTGGATCGAAGAT-GCAGATCTTGTCTT
129 AGAAAGCAGATCTTGTCTT-CATGTATTGG-CGTGAAGTAGATCGAAGATAACAGATCTTGTCTT
* * * * *
44897598 CCCATACTGGTGGCGAAGTAGATCGAAGAAA
192 CCTATATTGGTAGCGAAGTGGATCGAAG-AT
* * * * * * * *
44897629 GCAGATCTTATCTACATGTATTGGCGTGAAGTAGATCAAAAATAGCAGATCTTGCCTTCCTATAC
1 GCAGATCTTGTCTTCAAGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATAT
* * **
44897694 TGGCAGTGAAGCAGATCGAAGA
66 TGGTAGCGAAGTGGATCGAAGA
44897716 CGTTAGTCTT
Statistics
Matches: 465, Mismatches: 56, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
218 59 0.13
219 1 0.00
221 288 0.62
222 117 0.25
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (221 bp):
GCAGATCTTGTCTTCAAGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATAT
TGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAG
AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTA
TATTGGTAGCGAAGTGGATCGAAGAT
Found at i:44897622 original size:310 final size:310
Alignment explanation
Indices: 44896995--44897715 Score: 1045
Period size: 310 Copynumber: 2.3 Consensus size: 310
44896985 GTATTGGCGT
* * * * * * *
44896995 GAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTAGC--GAAGTGGATCGACGAT-GCAG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAG
* * * **
44897057 ATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATCGG
66 ATCTTGTCTTCCTATACTAGTAGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCACATATCGG
* * *
44897122 CGTGAAGTAGATCGAAGATAATAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATG
131 CGCGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATA
* * *
44897187 CAGATCTTGCCTTCAAGTATTGGCATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATT
196 CAGATCTTACCTTCAAGTATTGGCATGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCAATATT
*
44897252 GGTAGTGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGC
261 GGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGC
* *
44897302 GAAATAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAG
* * * * *
44897367 ATCTTGTCTTCCTATATTAGTAGCGAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGG
66 ATCTTGTCTTCCTATACTAGTAGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCACATATCGG
*
44897431 TGGCGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGAT
131 -CGCGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGAT
* ** *
44897496 ACAGATCTTATCTTCCCGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCAATAT
195 ACAGATCTTACCTTCAAGTATTGGCATGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCAATAT
44897561 TGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGC
260 TGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGC
* * * *
44897612 GAAGTAGATCGAAGAAAGCAGATCTTATCTACATGTATTGGCGTGAAGTAGATCAAAAATAGCAG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAG
* * * * *
44897677 ATCTTGCCTTCCTATACTGGCAGTGAAGCAGATCGAAGA
66 ATCTTGTCTTCCTATACTAGTAGCGAAGTAGATCGAAGA
44897716 CGTTAGTCTT
Statistics
Matches: 365, Mismatches: 44, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
307 36 0.10
309 35 0.10
310 294 0.81
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.28
Consensus pattern (310 bp):
GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAG
ATCTTGTCTTCCTATACTAGTAGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCACATATCGG
CGCGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATA
CAGATCTTACCTTCAAGTATTGGCATGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCAATATT
GGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGC
Done.