Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 147 of 207
Found at i:45021098 original size:54 final size:54
Alignment explanation
Indices: 45021058--45021589 Score: 469
Period size: 54 Copynumber: 9.9 Consensus size: 54
45021048 ATGTTGAAGA
* * ** *
45021058 TCGTGATTGTAAATCAGTGGACCGTGAGATTTGTAAAATCTTGCAAGT---AGG
1 TCGTGATTGTAAATCAGCGGACCGTGAGATTCGTAAAATCCCGTAAGTAAAAGG
** * * ** * ** *
45021109 TCGTGATCATAAATTAGCGAATTGTGAGATTTGTAAAATCCTATAAGTAGAAGG
1 TCGTGATTGTAAATCAGCGGACCGTGAGATTCGTAAAATCCCGTAAGTAAAAGG
* * *
45021163 TCGTGATTGTAAGTCAGAGGACCGTGAGATTCGTAAAATCTCGTAAGTAGAAA-G
1 TCGTGATTGTAAATCAGCGGACCGTGAGATTCGTAAAATCCCGTAAGTA-AAAGG
* * * * * * * * *
45021217 TCATGATCGTAAATCAACAGACTGTGATATTTGTAAAATCCTGAAAGTAAAAGG
1 TCGTGATTGTAAATCAGCGGACCGTGAGATTCGTAAAATCCCGTAAGTAAAAGG
* ** * * *
45021271 TCATGATCATAAATCAGCAGACCATGAGATTCGTAAAATCCAGTAAGTAAAAGG
1 TCGTGATTGTAAATCAGCGGACCGTGAGATTCGTAAAATCCCGTAAGTAAAAGG
* * * * *
45021325 TCATGATCGTAAATCAGCAGACTGTGAGATTCATAAAATCCCGTAAGTAAAAGG
1 TCGTGATTGTAAATCAGCGGACCGTGAGATTCGTAAAATCCCGTAAGTAAAAGG
** * * * * *
45021379 TCGTGAAGGTAAATCAGCAGACTGTGAGATTCATAAAATCTCGAAAGTAAAAGG
1 TCGTGATTGTAAATCAGCGGACCGTGAGATTCGTAAAATCCCGTAAGTAAAAGG
* * * ** *
45021433 TCGTGATTGTAAATCAGTGGACCATGAGATTCATAAAATCCCAAAATTAAAAGG
1 TCGTGATTGTAAATCAGCGGACCGTGAGATTCGTAAAATCCCGTAAGTAAAAGG
* * * * * * * *
45021487 TCGTGGTTGTAAATCAGTGGACTGTGAGATTTGTAAAATCTCGAAAATAGAAGG
1 TCGTGATTGTAAATCAGCGGACCGTGAGATTCGTAAAATCCCGTAAGTAAAAGG
* * *
45021541 TCATGATTGTAAATCAGTGGACCGTGAGATTCGTAAAATCACGTAAGTA
1 TCGTGATTGTAAATCAGCGGACCGTGAGATTCGTAAAATCCCGTAAGTA
45021590 GAAGCCACTT
Statistics
Matches: 398, Mismatches: 78, Indels: 7
0.82 0.16 0.01
Matches are distributed among these distances:
51 38 0.10
53 3 0.01
54 355 0.89
55 2 0.01
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.27
Consensus pattern (54 bp):
TCGTGATTGTAAATCAGCGGACCGTGAGATTCGTAAAATCCCGTAAGTAAAAGG
Found at i:45023576 original size:15 final size:15
Alignment explanation
Indices: 45023556--45023586 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
45023546 AGACCCGATA
*
45023556 CATACTCATGCAATT
1 CATACTCATGAAATT
45023571 CATACTCATGAAATT
1 CATACTCATGAAATT
45023586 C
1 C
45023587 GATGCTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.26, G:0.06, T:0.32
Consensus pattern (15 bp):
CATACTCATGAAATT
Found at i:45024071 original size:46 final size:46
Alignment explanation
Indices: 45023969--45024403 Score: 747
Period size: 46 Copynumber: 9.6 Consensus size: 46
45023959 TACGTATGAT
* **
45023969 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCT-GGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
45024012 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
45024058 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
45024103 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
* *
45024149 CACTTATCACTTTGTCACTTGATCAAATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
45024194 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
45024239 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
45024285 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
45024331 CACTTATCACTTTGTCACTTGATCAGATAATTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
45024377 CACTTATCACTTTTTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
45024404 AGTACTCAAA
Statistics
Matches: 376, Mismatches: 11, Indels: 7
0.95 0.03 0.02
Matches are distributed among these distances:
43 10 0.03
44 5 0.01
45 152 0.40
46 209 0.56
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.33
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
Found at i:45024088 original size:91 final size:91
Alignment explanation
Indices: 45023969--45024403 Score: 759
Period size: 91 Copynumber: 4.8 Consensus size: 91
45023959 TACGTATGAT
* *
45023969 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCTGGGCTACCACTTATCACTTTGTCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTT
45024032 GATCAGATAAGTGTAGCTAAAGCTAC
66 GATCAGATAAGTGTAGCTAAAGCTAC
45024058 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTT
45024123 GATCAGATAAGTGTAGCTAAAGCTAC
66 GATCAGATAAGTGTAGCTAAAGCTAC
*
45024149 CACTTATCACTTTGTCACTTGATCAAATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTT
*
45024214 GATCAGATAAGTGTAGCT-AGGCTAC
66 GATCAGATAAGTGTAGCTAAAGCTAC
*
45024239 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AGGCTACCACTTATCACTTTGTCACT
45024304 TGATCAGATAAGTGTAGCTAAAGCTAC
65 TGATCAGATAAGTGTAGCTAAAGCTAC
* * *
45024331 CACTTATCACTTTGTCACTTGATCAGATAATTGTAGCTAAAGCTACCACTTATCACTTTTTCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AGGCTACCACTTATCACTTTGTCACT
45024396 TGATCAGA
65 TGATCAGA
45024404 AGTACTCAAA
Statistics
Matches: 333, Mismatches: 9, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
89 10 0.03
90 48 0.14
91 198 0.59
92 77 0.23
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.33
Consensus pattern (91 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTT
GATCAGATAAGTGTAGCTAAAGCTAC
Found at i:45024135 original size:136 final size:137
Alignment explanation
Indices: 45023969--45024403 Score: 761
Period size: 136 Copynumber: 3.2 Consensus size: 137
45023959 TACGTATGAT
* **
45023969 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCT-GGGCTACCACTTATCACTTTGTCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACT
45024031 TGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT
66 TGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT
45024096 AGGCTAC
131 AGGCTAC
45024103 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACT
* *
45024168 TGATCAAATAAGTGTAGCT-AGGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT
66 TGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT
45024232 AGGCTAC
131 AGGCTAC
45024239 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACT
*
45024304 TGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGATAATTGTAGCT
66 TGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT
*
45024369 AAAGCTAC
131 -AGGCTAC
*
45024377 CACTTATCACTTTTTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
45024404 AGTACTCAAA
Statistics
Matches: 286, Mismatches: 10, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
134 10 0.03
135 5 0.02
136 154 0.54
137 85 0.30
138 32 0.11
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.33
Consensus pattern (137 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACT
TGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT
AGGCTAC
Found at i:45028053 original size:21 final size:23
Alignment explanation
Indices: 45028022--45028063 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
45028012 AGCTTTATTT
45028022 TTCACCCATTTGATC-TTTTAAC
1 TTCACCCATTTGATCATTTTAAC
*
45028044 TTCA-CCATTTGTTCATTTTA
1 TTCACCCATTTGATCATTTTA
45028064 TAGCTATATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.21, C:0.24, G:0.05, T:0.50
Consensus pattern (23 bp):
TTCACCCATTTGATCATTTTAAC
Found at i:45030422 original size:41 final size:41
Alignment explanation
Indices: 45030361--45030845 Score: 494
Period size: 41 Copynumber: 11.9 Consensus size: 41
45030351 TTCTGATCTT
*
45030361 TCGGGGCTTTAGCGGCATTTTTGGAAAAGCGCCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGC
* ** * * *
45030402 TCGGGGCTTTAGTGGTATTTTTGAAAAAGCGTCGGTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGC
* * *
45030443 TTGGGGCTTTAGCGACGTTTTTGGAAAAGCCCCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGC
* * * *
45030484 TCGCGACTTTCGCGGCGTTTTTGGAAAAGCACCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGC
* * * * *
45030525 CCGGGGCTTTCGCGGTGTTTTTGGAAAATCGCCACTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGC
* * * *
45030566 TCGGGGCTTTTGCAGCATTTTTGGAAAAGCGCTGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGC
* * *
45030607 TCGAGGCTTTCGCGGCGTTTTT-GAAAAGCGCTGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGC
* * * * * *
45030647 TTGGGGATTTAGCGACTTTTTTGAAAAAGGGCCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGC
**
45030688 TCGGGGCTTTAGCGGCG-TTTTCCAAGAAGCGCCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGGAA-AAGCGCCGCTAATGC
* * * ** *
45030729 TTGGGGATTTAGCGGTG-TTTTCCAAGAAGCACCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGGAA-AAGCGCCGCTAATGC
* *
45030770 TCGGGGCTTTAGCGGCGTTTTCCAGG--AAGCACCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTT--TGGAAAAGCGCCGCTAATGC
* **
45030811 TTGGGGCTTTAGCGGCGTTTTTTAAAAAGCGCCGC
1 TCGGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGC
45030846 AAAAAAATTT
Statistics
Matches: 367, Mismatches: 70, Indels: 14
0.81 0.16 0.03
Matches are distributed among these distances:
40 40 0.11
41 324 0.88
42 3 0.01
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.29
Consensus pattern (41 bp):
TCGGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGC
Found at i:45031561 original size:28 final size:28
Alignment explanation
Indices: 45031495--45031571 Score: 66
Period size: 28 Copynumber: 2.7 Consensus size: 28
45031485 TATTAAATAA
* *
45031495 GATTTAAGGGTTAGTAG-TTAAGGGTTAGG
1 GATTT-AGGGTTA-AAGATTAAGAGTTAGG
* * *
45031524 GGTTTGGGGTTAAAGATTAAGAGTTAGT
1 GATTTAGGGTTAAAGATTAAGAGTTAGG
*
45031552 GATTTAGGGTTTAGAGATTA
1 GATTTAGGG-TTAAAGATTA
45031572 GGGGTCGGGT
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
27 2 0.05
28 23 0.61
29 13 0.34
ACGTcount: A:0.29, C:0.00, G:0.35, T:0.36
Consensus pattern (28 bp):
GATTTAGGGTTAAAGATTAAGAGTTAGG
Found at i:45032255 original size:24 final size:23
Alignment explanation
Indices: 45032228--45032335 Score: 59
Period size: 24 Copynumber: 4.7 Consensus size: 23
45032218 ATCGAAAATG
45032228 AATATTTTATAAAATCACTTAACT
1 AATATTTTATAAAATCACTTAA-T
*
45032252 AATAATTTCTACAAAAT-A---AA-
1 AAT-ATTT-TATAAAATCACTTAAT
* **
45032272 AA-ATTTTAT-AAATAAGAATAAT
1 AATATTTTATAAAATCA-CTTAAT
45032294 AAATATTTTATAAAATCACTTAACT
1 -AATATTTTATAAAATCACTTAA-T
45032319 AATAATTTCTATAAAAT
1 AAT-ATTT-TATAAAAT
45032336 AATTTCTAAT
Statistics
Matches: 65, Mismatches: 5, Indels: 26
0.68 0.05 0.27
Matches are distributed among these distances:
16 4 0.06
17 3 0.05
18 4 0.06
20 2 0.03
21 2 0.03
22 2 0.03
23 2 0.03
24 16 0.25
25 15 0.23
26 15 0.23
ACGTcount: A:0.53, C:0.08, G:0.01, T:0.38
Consensus pattern (23 bp):
AATATTTTATAAAATCACTTAAT
Found at i:45032338 original size:14 final size:15
Alignment explanation
Indices: 45032319--45032349 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
45032309 TCACTTAACT
45032319 AATAATTTCT-ATAA
1 AATAATTTCTAATAA
45032333 AATAATTTCTAATAA
1 AATAATTTCTAATAA
45032348 AA
1 AA
45032350 ATTTAATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (15 bp):
AATAATTTCTAATAA
Found at i:45032358 original size:18 final size:17
Alignment explanation
Indices: 45032335--45032368 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
45032325 TTCTATAAAA
*
45032335 TAATTTCTAATAAAAATT
1 TAATTTATAA-AAAAATT
45032353 TAATTTATAAAAAAAT
1 TAATTTATAAAAAAAT
45032369 AATAAATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (17 bp):
TAATTTATAAAAAAATT
Found at i:45032443 original size:78 final size:77
Alignment explanation
Indices: 45032266--45032415 Score: 241
Period size: 78 Copynumber: 1.9 Consensus size: 77
45032256 ATTTCTACAA
*
45032266 AATAAAAA-ATTTTATAAATAAGAATAATAAATATTTTATAAAATCACTTAACTAATAATTTCTA
1 AATAAAAATTTTTTATAAA-AAGAATAATAAATATTTTATAAAATCACTTAACTAATAATTTCTA
*
45032330 TAAAATAATTTCT
65 CAAAATAATTTCT
45032343 AATAAAAATTTAATTTATAAAAA-AATAATAAATATTTTATAAAATCACTTAACTAATAATTTCT
1 AATAAAAATTT--TTTATAAAAAGAATAATAAATATTTTATAAAATCACTTAACTAATAATTTCT
45032407 ACAAAATAA
64 ACAAAATAA
45032416 AAGATTTTTG
Statistics
Matches: 68, Mismatches: 2, Indels: 5
0.91 0.03 0.07
Matches are distributed among these distances:
77 8 0.12
78 50 0.74
79 2 0.03
80 8 0.12
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.37
Consensus pattern (77 bp):
AATAAAAATTTTTTATAAAAAGAATAATAAATATTTTATAAAATCACTTAACTAATAATTTCTAC
AAAATAATTTCT
Found at i:45036633 original size:43 final size:43
Alignment explanation
Indices: 45036435--45036635 Score: 244
Period size: 43 Copynumber: 4.7 Consensus size: 43
45036425 GAGAAGCGTT
* * * * * *
45036435 GCTAAAGGT-TTGTTCTTTAGCGGCGATTGAGATAAAAAGCGCC
1 GCTAAAGGTCATGATCTTTAGCGGCGTTTGTGA-CAAAAGCACC
45036478 GCTAAAGGTCATGATCTTTAGCGGCGTTTGTGACAAAAGCGA-C
1 GCTAAAGGTCATGATCTTTAGCGGCGTTTGTGACAAAAGC-ACC
* * * *
45036521 GCTAAAGGTCATGATATTTAGCGACATTTGTGACAAAAGCGCC
1 GCTAAAGGTCATGATCTTTAGCGGCGTTTGTGACAAAAGCACC
* * *
45036564 GCTAAAGGTTATGGTCTTTAGCGGCGTTTGTGATAAAAGCACC
1 GCTAAAGGTCATGATCTTTAGCGGCGTTTGTGACAAAAGCACC
*
45036607 GCTAAAGGTCATGATCTTTAGTGGCGTTT
1 GCTAAAGGTCATGATCTTTAGCGGCGTTT
45036636 TAGCGGCACT
Statistics
Matches: 135, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
43 116 0.86
44 19 0.14
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (43 bp):
GCTAAAGGTCATGATCTTTAGCGGCGTTTGTGACAAAAGCACC
Found at i:45043399 original size:60 final size:61
Alignment explanation
Indices: 45043298--45043417 Score: 197
Period size: 60 Copynumber: 2.0 Consensus size: 61
45043288 TTCATTTGCA
* *
45043298 AAATCTTAGTACTATATCTCCAAAATCTTTGTAATCTTAGTATTGTATTGGAATCGCCATT
1 AAATCTTAGTACTATATCTCCAAAATCTTTGTAATCCTAGTATTGTATTGGAATCACCATT
* *
45043359 AAAT-TTAGTACTATATTTGCAAAATCTTTGTAATCCTAGTATTGTATTGGAATCACCAT
1 AAATCTTAGTACTATATCTCCAAAATCTTTGTAATCCTAGTATTGTATTGGAATCACCAT
45043418 GGTAGTACTG
Statistics
Matches: 55, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
60 51 0.93
61 4 0.07
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.41
Consensus pattern (61 bp):
AAATCTTAGTACTATATCTCCAAAATCTTTGTAATCCTAGTATTGTATTGGAATCACCATT
Found at i:45043423 original size:25 final size:25
Alignment explanation
Indices: 45043395--45043446 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
45043385 TTTGTAATCC
* *
45043395 TAGTATTGTATTGGAATCACCATGG
1 TAGTACTGTATTGGAATAACCATGG
45043420 TAGTACTGTATTGGAATAACCATGG
1 TAGTACTGTATTGGAATAACCATGG
45043445 TA
1 TA
45043447 ACTTCTTAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.31, C:0.12, G:0.23, T:0.35
Consensus pattern (25 bp):
TAGTACTGTATTGGAATAACCATGG
Found at i:45045241 original size:21 final size:22
Alignment explanation
Indices: 45045217--45045265 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
45045207 AGACTAATTT
45045217 GAAACAAAACA-GAAAAATATG
1 GAAACAAAACATGAAAAATATG
* * *
45045238 GAAAAAAAACATGAAAATTTTG
1 GAAACAAAACATGAAAAATATG
45045260 GAAACA
1 GAAACA
45045266 TGGGTCACAC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.63, C:0.08, G:0.14, T:0.14
Consensus pattern (22 bp):
GAAACAAAACATGAAAAATATG
Found at i:45048441 original size:28 final size:29
Alignment explanation
Indices: 45048400--45048458 Score: 111
Period size: 28 Copynumber: 2.1 Consensus size: 29
45048390 CTCTTTAGAG
45048400 GTGTCACCCCATAAAGCCTATTAACCACC
1 GTGTCACCCCATAAAGCCTATTAACCACC
45048429 GTGTC-CCCCATAAAGCCTATTAACCACC
1 GTGTCACCCCATAAAGCCTATTAACCACC
45048457 GT
1 GT
45048459 CGCGGTGTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 25 0.83
29 5 0.17
ACGTcount: A:0.29, C:0.37, G:0.12, T:0.22
Consensus pattern (29 bp):
GTGTCACCCCATAAAGCCTATTAACCACC
Found at i:45049588 original size:11 final size:11
Alignment explanation
Indices: 45049571--45049612 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
45049561 TATTTTTTTC
45049571 ACTATTTTGCT
1 ACTATTTTGCT
* *
45049582 ACCATTTTTCT
1 ACTATTTTGCT
*
45049593 ATTATTTTGCT
1 ACTATTTTGCT
45049604 ACTATTTTG
1 ACTATTTTG
45049613 TTGTTATTGT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.19, C:0.17, G:0.07, T:0.57
Consensus pattern (11 bp):
ACTATTTTGCT
Found at i:45049619 original size:22 final size:22
Alignment explanation
Indices: 45049539--45049620 Score: 64
Period size: 22 Copynumber: 3.8 Consensus size: 22
45049529 TTATTTTTTT
* *
45049539 TACTGTTTTGTTGTTATTTT-C
1 TACTATTTTGTTATTATTTTGC
* *
45049560 T--TATTTTTTTCACTATTTTGC
1 TACTATTTTGTT-ATTATTTTGC
*
45049581 TACCATTTT-TCTATTATTTTGC
1 TACTATTTTGT-TATTATTTTGC
*
45049603 TACTATTTTGTTGTTATT
1 TACTATTTTGTTATTATT
45049621 GTTTGGGTAT
Statistics
Matches: 47, Mismatches: 8, Indels: 11
0.71 0.12 0.17
Matches are distributed among these distances:
19 7 0.15
20 6 0.13
21 3 0.06
22 24 0.51
23 7 0.15
ACGTcount: A:0.15, C:0.12, G:0.09, T:0.65
Consensus pattern (22 bp):
TACTATTTTGTTATTATTTTGC
Found at i:45049744 original size:11 final size:11
Alignment explanation
Indices: 45049724--45049754 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
45049714 AAGTATACAT
45049724 ATTT-TTTTAA
1 ATTTGTTTTAA
45049734 ATTTGTTTTAA
1 ATTTGTTTTAA
45049745 ATTTGTTTTA
1 ATTTGTTTTA
45049755 GTGTTTTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.20
11 16 0.80
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (11 bp):
ATTTGTTTTAA
Found at i:45069166 original size:29 final size:32
Alignment explanation
Indices: 45069133--45069199 Score: 79
Period size: 32 Copynumber: 2.2 Consensus size: 32
45069123 TTTGTACTAT
45069133 GTTTTTG-CTTGA-CAT-GTGGTGCAATAATA
1 GTTTTTGACTTGAGCATGGTGGTGCAATAATA
* **
45069162 GTTTTGGACTTGAGTTTGGTGGTGCAATAATA
1 GTTTTTGACTTGAGCATGGTGGTGCAATAATA
45069194 -TTTTTG
1 GTTTTTG
45069200 TTTTATTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
29 6 0.19
30 5 0.16
31 6 0.19
32 14 0.45
ACGTcount: A:0.21, C:0.07, G:0.27, T:0.45
Consensus pattern (32 bp):
GTTTTTGACTTGAGCATGGTGGTGCAATAATA
Found at i:45079235 original size:145 final size:145
Alignment explanation
Indices: 45078967--45079258 Score: 557
Period size: 145 Copynumber: 2.0 Consensus size: 145
45078957 GTAAACTCAG
45078967 TTTGCTAGTTTATTAACCTACCATCCTGTCTTATCCATTTTGGATACCATTGCCGCCTACTTCAT
1 TTTGCTAGTTTATTAACCTACCATCCTGTCTTATCCATTTTGGATACCATTGCCGCCTACTTCAT
* *
45079032 ACAGTTTTGACTTTTAGTGTGGACTTAAATTGCCACATCTCCTGTGGAACTCTTCCATCCTCCAT
66 ACAATTTTGACTTTTAGTGTGGACTTAAATTGCCACATCTCCTGTGGAACTCCTCCATCCTCCAT
45079097 AGCCAATTTCATGTA
131 AGCCAATTTCATGTA
*
45079112 TTTGGTAGTTTATTAACCTACCATCCTGTCTTATCCATTTTGGATACCATTGCCGCCTACTTCAT
1 TTTGCTAGTTTATTAACCTACCATCCTGTCTTATCCATTTTGGATACCATTGCCGCCTACTTCAT
45079177 ACAATTTTGACTTTTAGTGTGGACTTAAATTGCCACATCTCCTGTGGAACTCCTCCATCCTCCAT
66 ACAATTTTGACTTTTAGTGTGGACTTAAATTGCCACATCTCCTGTGGAACTCCTCCATCCTCCAT
45079242 AGCCAATTTCATGTA
131 AGCCAATTTCATGTA
45079257 TT
1 TT
45079259 ATGCACATAT
Statistics
Matches: 144, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
145 144 1.00
ACGTcount: A:0.22, C:0.26, G:0.13, T:0.39
Consensus pattern (145 bp):
TTTGCTAGTTTATTAACCTACCATCCTGTCTTATCCATTTTGGATACCATTGCCGCCTACTTCAT
ACAATTTTGACTTTTAGTGTGGACTTAAATTGCCACATCTCCTGTGGAACTCCTCCATCCTCCAT
AGCCAATTTCATGTA
Found at i:45092703 original size:20 final size:21
Alignment explanation
Indices: 45092678--45092731 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 21
45092668 CTAGAAATTG
*
45092678 GTATTGATACTTGTAA-GAGA
1 GTATTGATACTTGTAATGAAA
* * *
45092698 GTATTGACACCT-TAATTAAA
1 GTATTGATACTTGTAATGAAA
45092718 GTATTGATACTTGT
1 GTATTGATACTTGT
45092732 TGATTCAAGA
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
19 3 0.12
20 22 0.85
21 1 0.04
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (21 bp):
GTATTGATACTTGTAATGAAA
Found at i:45102363 original size:20 final size:20
Alignment explanation
Indices: 45102338--45102386 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
45102328 CTATTGCCTC
*
45102338 TGTCCCTTCCACCATGG-TGT
1 TGTCCCTTCCACCA-GGCTAT
*
45102358 TGTCCCTTCCAGCAGGCTAT
1 TGTCCCTTCCACCAGGCTAT
45102378 TGTCCCTTC
1 TGTCCCTTC
45102387 AATGGGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 2 0.08
20 24 0.92
ACGTcount: A:0.10, C:0.37, G:0.18, T:0.35
Consensus pattern (20 bp):
TGTCCCTTCCACCAGGCTAT
Found at i:45103476 original size:50 final size:51
Alignment explanation
Indices: 45103399--45103525 Score: 161
Period size: 50 Copynumber: 2.5 Consensus size: 51
45103389 ACAGGCGCCA
***
45103399 ATCAATTTTTTATATTAAAAAAATTTAATCGCGCCTATCTGACAACGAG-A-
1 ATCAATTTTTTATATTAAAATTTTTTAATCGCGCCTATCTGA-AACGAGCAG
* * *
45103449 ATCAATTTTTTA-ATATAAATTTTTTTAATCGCGCCTATCTGAAAGGTGCAG
1 ATCAATTTTTTATAT-TAAAATTTTTTAATCGCGCCTATCTGAAACGAGCAG
45103500 ATCAATTTTTTATATTAAAATTTTTT
1 ATCAATTTTTTATATTAAAATTTTTT
45103526 GTTTAAATAA
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
49 6 0.09
50 36 0.55
51 22 0.33
52 2 0.03
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.43
Consensus pattern (51 bp):
ATCAATTTTTTATATTAAAATTTTTTAATCGCGCCTATCTGAAACGAGCAG
Found at i:45103802 original size:16 final size:16
Alignment explanation
Indices: 45103781--45103819 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
45103771 TTAACTCATT
*
45103781 TAATTTTTATATAATG
1 TAATTTTTATATAATA
45103797 TAATTTTTATATAATA
1 TAATTTTTATATAATA
45103813 TAATTTT
1 TAATTTT
45103820 ATTTGATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (16 bp):
TAATTTTTATATAATA
Found at i:45106303 original size:20 final size:20
Alignment explanation
Indices: 45106278--45106315 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
45106268 ACTAGATCTG
45106278 TTAAAAAAATTTCAAAATTC
1 TTAAAAAAATTTCAAAATTC
* *
45106298 TTAAAACAGTTTCAAAAT
1 TTAAAAAAATTTCAAAAT
45106316 GCAAAAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TTAAAAAAATTTCAAAATTC
Found at i:45106981 original size:15 final size:16
Alignment explanation
Indices: 45106956--45106986 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
45106946 ATTGGTTCGT
45106956 AAATAAAAAATATAAA
1 AAATAAAAAATATAAA
45106972 AAAT-AAAAATATAAA
1 AAATAAAAAATATAAA
45106987 GAGAAATGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (16 bp):
AAATAAAAAATATAAA
Found at i:45107028 original size:9 final size:8
Alignment explanation
Indices: 45106956--45107029 Score: 51
Period size: 9 Copynumber: 8.4 Consensus size: 8
45106946 ATTGGTTCGT
45106956 AAAT-AAA
1 AAATAAAA
45106963 AAATATAAA
1 AAATA-AAA
45106972 AAATAAAA
1 AAATAAAA
*
45106980 ATATAAAGA
1 AAATAAA-A
45106989 GAAATGAAATTA
1 -AAAT-AAA--A
45107001 AAATAAAA
1 AAATAAAA
*
45107009 ACATAAGAA
1 AAATAA-AA
45107018 AAATAATAA
1 AAATAA-AA
45107027 AAA
1 AAA
45107030 GATTGTAGTA
Statistics
Matches: 54, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
7 4 0.07
8 15 0.28
9 21 0.39
10 6 0.11
11 7 0.13
12 1 0.02
ACGTcount: A:0.76, C:0.01, G:0.05, T:0.18
Consensus pattern (8 bp):
AAATAAAA
Found at i:45107374 original size:7 final size:7
Alignment explanation
Indices: 45107362--45107391 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
45107352 ATTGTGGGTG
45107362 AGTGAGC
1 AGTGAGC
45107369 AGTGAGC
1 AGTGAGC
45107376 AGTGAGC
1 AGTGAGC
45107383 AGTGAGC
1 AGTGAGC
45107390 AG
1 AG
45107392 AGGCTCCTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.30, C:0.13, G:0.43, T:0.13
Consensus pattern (7 bp):
AGTGAGC
Found at i:45110447 original size:50 final size:50
Alignment explanation
Indices: 45110225--45110463 Score: 237
Period size: 51 Copynumber: 4.7 Consensus size: 50
45110215 AAAGTGATGG
* * *** *
45110225 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGAAAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAAGTTTGA
* * * * * * * *
45110275 TCGCATGTGCAGTACTATGTGCAGGCTACTATGCGTACCAGATAGCTTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAAG-TTTGA
* * * * *
45110326 TCACGTGTGTAGTACTATGTACAGGCTACTACGAGTATCGGATA-TTAATGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAAGTT--TGA
* * *
45110377 TCACGTGTGTAGTACTATGTGCAGGTTACTACGTGAACTGGAAAGTTTGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAAGTTTGA
*
45110427 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA
45110464 TCGAATGATA
Statistics
Matches: 151, Mismatches: 34, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
49 2 0.01
50 72 0.48
51 75 0.50
52 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAAGTTTGA
Found at i:45110493 original size:101 final size:102
Alignment explanation
Indices: 45110225--45110500 Score: 310
Period size: 101 Copynumber: 2.7 Consensus size: 102
45110215 AAAGTGATGG
* * * *
45110225 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGA-AA-GGTCGCATGTGCAGT
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GAATGATAATGGTCACATGTGTAGT
* * *
45110288 ACTATGTGCAGGCTACTATGCGTACCAGATAGCTTCGA
65 ACTATGTGCAGGCTACTACGCGAACCAGAAAGCTTCGA
* * *
45110326 TCACGTGTGTAGTACTATGT-ACAGGCTACTACGAGTATCGGAT-ATTAATGGTCACGTGTGTAG
1 TCACGTGTGTAGTACTATGTGA-AGGCTACTACGTGTATCGAATGA-TAATGGTCACATGTGTAG
* * ** *
45110389 TACTATGTGCAGGTTACTACGTGAACTGGAAAG-TTTGA
64 TACTATGTGCAGGCTACTACGCGAACCAGAAAGCTTCGA
* * * * *
45110427 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATAGTTAAATGAGTGGTA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATGGTCACATGTGTAGTA
45110492 CTATGTGCA
66 CTATGTGCA
45110501 AACCACCGAA
Statistics
Matches: 146, Mismatches: 23, Indels: 12
0.81 0.13 0.07
Matches are distributed among these distances:
99 1 0.01
100 3 0.02
101 103 0.71
102 39 0.27
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATGGTCACATGTGTAGTA
CTATGTGCAGGCTACTACGCGAACCAGAAAGCTTCGA
Found at i:45113077 original size:18 final size:18
Alignment explanation
Indices: 45113054--45113091 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
45113044 TGCCAGGTGC
* *
45113054 GTATCCTAGCCCTTTTAT
1 GTATCCTAACCCTTATAT
45113072 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
45113090 GT
1 GT
45113092 TTCTTTTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:45113376 original size:21 final size:21
Alignment explanation
Indices: 45113338--45113398 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
45113328 CAACACCGAC
*
45113338 AACCAG-ATCCTCTACCGGAGG
1 AACCAGAATCCTC-GCCGGAGG
* *
45113359 AACCAGAATCCTCGCCGGTGT
1 AACCAGAATCCTCGCCGGAGG
* *
45113380 AACCACAACCCTCGCCGGA
1 AACCAGAATCCTCGCCGGA
45113399 AGCTGGACAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 27 0.82
22 6 0.18
ACGTcount: A:0.28, C:0.38, G:0.21, T:0.13
Consensus pattern (21 bp):
AACCAGAATCCTCGCCGGAGG
Found at i:45116945 original size:126 final size:126
Alignment explanation
Indices: 45116720--45117010 Score: 451
Period size: 126 Copynumber: 2.3 Consensus size: 126
45116710 CCAAACATGC
* * * *
45116720 GCTACTGTAGCAAAAGCCCGTCCATGTGGGAGCTTCTTTCAGTACTTCTGTTGACAAAGCATCAT
1 GCTACAGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCAT
* *
45116785 GCTTAAAGCGTTTTTGACACTATTCACTCAGAAACGTCTACTCGAAATTATTTTTTCAGGA
66 GCTTAAAGCGTTTTTGACACTATTCACTCAGAAACGTATACTCAAAATTATTTTTTCAGGA
* *
45116846 GCTACAGTAGCAAAAGCGCGTCCACGTGGGAGTTTCTTTCAGTACTAT-TGCTGACAAAGCATCT
1 GCTACAGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACT-TCTGCTGACAAAGCATCA
* **
45116910 TGTTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTATACTCAAAATTATTTTTTCAGGA
65 TGCTTAAAGCGTTTTTGACACTATTCACTCAGAAACGTATACTCAAAATTATTTTTTCAGGA
45116972 GCTACTA-TAGCAAAAGCGCGTCCACGTGGGAGCTTCTTT
1 GCTAC-AGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTT
45117011 AAATTAACAA
Statistics
Matches: 151, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
126 149 0.99
127 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (126 bp):
GCTACAGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCAT
GCTTAAAGCGTTTTTGACACTATTCACTCAGAAACGTATACTCAAAATTATTTTTTCAGGA
Found at i:45118159 original size:22 final size:22
Alignment explanation
Indices: 45118134--45118192 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
45118124 TTTTTTACTT
*
45118134 TTTTTTTACTATTTTATTGTTA
1 TTTTTTTACTATTTTACTGTTA
*
45118156 TTTTTTTACTATTTCACTGTTA
1 TTTTTTTACTATTTTACTGTTA
* **
45118178 TGTTGATACTATTTT
1 TTTTTTTACTATTTT
45118193 GTTATTGTTG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.19, C:0.08, G:0.07, T:0.66
Consensus pattern (22 bp):
TTTTTTTACTATTTTACTGTTA
Found at i:45118168 original size:11 final size:11
Alignment explanation
Indices: 45118124--45118169 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
45118114 TTTCTTGTTG
*
45118124 TTTTTTACTTT
1 TTTTTTACTAT
45118135 TTTTTTACTAT
1 TTTTTTACTAT
* **
45118146 TTTATTGTTAT
1 TTTTTTACTAT
45118157 TTTTTTACTAT
1 TTTTTTACTAT
45118168 TT
1 TT
45118170 CACTGTTATG
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.15, C:0.07, G:0.02, T:0.76
Consensus pattern (11 bp):
TTTTTTACTAT
Found at i:45120104 original size:2 final size:2
Alignment explanation
Indices: 45120099--45120131 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
45120089 ACACACATAG
45120099 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
45120132 GGAAACAACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:45124358 original size:37 final size:37
Alignment explanation
Indices: 45124317--45124510 Score: 262
Period size: 37 Copynumber: 5.0 Consensus size: 37
45124307 TAGTTTTAGC
45124317 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
1 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
45124354 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
1 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
45124391 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGTAGTTTT
1 TACACTTATCTGATCAAGAAACAAAGTGATAAGT-G--G---T
*
45124434 AGCTACACTTATCTGATCAAGAAACAAAGTGATAAGTGGC
1 ---TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
****
45124474 TACACTTATCTGATCAAGTGGTAAAGTGATAAGTGGT
1 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
45124511 AGCCTAGCTA
Statistics
Matches: 142, Mismatches: 6, Indels: 18
0.86 0.04 0.11
Matches are distributed among these distances:
37 103 0.73
38 1 0.01
40 1 0.01
43 2 0.01
45 1 0.01
46 34 0.24
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.28
Consensus pattern (37 bp):
TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
Found at i:45124383 original size:83 final size:79
Alignment explanation
Indices: 45124317--45124549 Score: 266
Period size: 83 Copynumber: 2.9 Consensus size: 79
45124307 TAGTTTTAGC
45124317 TACACTTATCTGATCAAGAAACAAAGTGATAAGT-G-G-T-TACACTTATCTGATCAAGAAACAA
1 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGAGTTATACACTTATCTGATCAAGAAACAA
45124378 AGTGATAAGT-GGT
66 AGTGATAAGTGGGT
45124391 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAAGA
1 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGG-AG--TTA--TACACTTATCTGATCAAGA
*
45124456 AACAAAGTGATAAGT-GGC
61 AACAAAGTGATAAGTGGGT
**** * *
45124474 TACACTTATCTGATCAAGTGGTAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTGATCAAG-G
1 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGG-AG-TTA--TACACTTATCTGATCAAGAA
45124538 AC-AAGTGATAAG
62 ACAAAGTGATAAG
45124550 AGGTCATATG
Statistics
Matches: 142, Mismatches: 8, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
74 34 0.24
75 1 0.01
77 1 0.01
80 11 0.08
81 2 0.01
82 22 0.15
83 71 0.50
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.27
Consensus pattern (79 bp):
TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGAGTTATACACTTATCTGATCAAGAAACAA
AGTGATAAGTGGGT
Found at i:45124457 original size:120 final size:120
Alignment explanation
Indices: 45124279--45124510 Score: 401
Period size: 120 Copynumber: 1.9 Consensus size: 120
45124269 TTTGAGTACT
**
45124279 TCTGATCAAGTGACAAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAAGAAACAAAGT
1 TCTGATCAAGAAACAAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAAGAAACAAAGT
*
45124344 GATAAGTGGTTACACTTATCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
66 GATAAGTGGCTACACTTATCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
45124399 TCTGATCAAGAAACAAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAAGAAACAAAGT
1 TCTGATCAAGAAACAAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAAGAAACAAAGT
****
45124464 GATAAGTGGCTACACTTATCTGATCAAGTGGTAAAGTGATAAGTGGT
66 GATAAGTGGCTACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
45124511 AGCCTAGCTA
Statistics
Matches: 105, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
120 105 1.00
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (120 bp):
TCTGATCAAGAAACAAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAAGAAACAAAGT
GATAAGTGGCTACACTTATCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
Found at i:45128800 original size:66 final size:66
Alignment explanation
Indices: 45128713--45128843 Score: 172
Period size: 66 Copynumber: 2.0 Consensus size: 66
45128703 GGTTCTTATC
* * * * * *
45128713 CGGATAGCTGTCAGGTGTGGCGACAATTCTGGACGCAGTCTGGAATTAATTCATGTAGTGACATT
1 CGGATAACTGTCAGGCGTGGCGACAATTCTGGACGCAATCTGGAATTAACTCATGCAGCGACATT
45128778 G
66 G
* * * *
45128779 CGGATAACTGTTAGGCGTGGCGACAATTTTGGATGCAATCTGGGATTAACTCATGCAGCGACATT
1 CGGATAACTGTCAGGCGTGGCGACAATTCTGGACGCAATCTGGAATTAACTCATGCAGCGACATT
45128844 AATGCAATAA
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
66 55 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (66 bp):
CGGATAACTGTCAGGCGTGGCGACAATTCTGGACGCAATCTGGAATTAACTCATGCAGCGACATT
G
Found at i:45129457 original size:26 final size:26
Alignment explanation
Indices: 45129428--45129484 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
45129418 CCTTCCAAAA
45129428 ACAA-AATCAATTCTTCTTCACTATTC
1 ACAATAAT-AATTCTTCTTCACTATTC
* * *
45129454 ACAATCATAATTCTTCTTCATTGTTC
1 ACAATAATAATTCTTCTTCACTATTC
45129480 ACAAT
1 ACAAT
45129485 CACCAACAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 25 0.93
27 2 0.07
ACGTcount: A:0.33, C:0.25, G:0.02, T:0.40
Consensus pattern (26 bp):
ACAATAATAATTCTTCTTCACTATTC
Found at i:45129485 original size:26 final size:26
Alignment explanation
Indices: 45129436--45129486 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
45129426 AAACAAAATC
45129436 AATTCTTCTTCACTATTCACAATCAT
1 AATTCTTCTTCACTATTCACAATCAT
* *
45129462 AATTCTTCTTCATTGTTCACAATCA
1 AATTCTTCTTCACTATTCACAATCA
45129487 CCAACAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.02, T:0.43
Consensus pattern (26 bp):
AATTCTTCTTCACTATTCACAATCAT
Found at i:45130582 original size:32 final size:32
Alignment explanation
Indices: 45130545--45130608 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
45130535 AAAGTGTTCG
45130545 TGCATGAATGAAAGAGACTGAGGTTTATGTAA
1 TGCATGAATGAAAGAGACTGAGGTTTATGTAA
45130577 TGCATGAATGAAAGAGACTGAGGTTTATGTAA
1 TGCATGAATGAAAGAGACTGAGGTTTATGTAA
45130609 CACTCCAAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.06, G:0.28, T:0.28
Consensus pattern (32 bp):
TGCATGAATGAAAGAGACTGAGGTTTATGTAA
Found at i:45134446 original size:119 final size:120
Alignment explanation
Indices: 45134264--45134486 Score: 285
Period size: 119 Copynumber: 1.9 Consensus size: 120
45134254 TCCTCATTCA
* *
45134264 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGAT
*
45134329 -TCAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 AT-AGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
45134384 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-AGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCCGG
* * *
45134446 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
45134487 CATCATTCAA
Statistics
Matches: 89, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
118 3 0.03
119 65 0.73
120 21 0.24
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:45134486 original size:40 final size:40
Alignment explanation
Indices: 45134262--45134486 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
45134252 GCTCCTCATT
* *
45134262 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
45134302 CAAATGCCTTCGGGACTTAACCCGGAT-TCAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATAT-AGTAACTCGCA
* *
45134342 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
45134382 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * * *
45134421 CAAATGCCTTC-AGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
45134462 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
45134487 CATCATTCAA
Statistics
Matches: 161, Mismatches: 16, Indels: 16
0.83 0.08 0.08
Matches are distributed among these distances:
38 1 0.01
39 32 0.20
40 116 0.72
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:45145014 original size:30 final size:29
Alignment explanation
Indices: 45144979--45145047 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 29
45144969 CCATCAAATA
45144979 ATGAAAAGGAATAGCTTCTGA-TATCGAGCT
1 ATGAAAAGG-ATAGCTTC-GACTATCGAGCT
*
45145009 TTGAAAAGTGATAGCTTCGACTATCGAGCT
1 ATGAAAAG-GATAGCTTCGACTATCGAGCT
45145039 ATGAAAAGG
1 ATGAAAAGG
45145048 GTTGGGACAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
29 3 0.09
30 31 0.89
31 1 0.03
ACGTcount: A:0.36, C:0.13, G:0.25, T:0.26
Consensus pattern (29 bp):
ATGAAAAGGATAGCTTCGACTATCGAGCT
Found at i:45151695 original size:30 final size:31
Alignment explanation
Indices: 45151627--45151700 Score: 107
Period size: 31 Copynumber: 2.4 Consensus size: 31
45151617 ATCATCGGCT
45151627 AATGAAAAGGGATAGCTTCGGCTATCAAAAC
1 AATGAAAAGGGATAGCTTCGGCTATCAAAAC
*
45151658 AATGAAAAGGGATAGCCTT-GGCTATC-AAAT
1 AATGAAAAGGGATAG-CTTCGGCTATCAAAAC
*
45151688 TATGAAAAGGGAT
1 AATGAAAAGGGAT
45151701 GGTGACGACC
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
30 15 0.38
31 22 0.55
32 3 0.08
ACGTcount: A:0.42, C:0.12, G:0.24, T:0.22
Consensus pattern (31 bp):
AATGAAAAGGGATAGCTTCGGCTATCAAAAC
Found at i:45151715 original size:30 final size:30
Alignment explanation
Indices: 45151681--45151865 Score: 112
Period size: 30 Copynumber: 6.2 Consensus size: 30
45151671 AGCCTTGGCT
45151681 ATCAAATTATGAAAAGGGATGGTGACGACC
1 ATCAAATTATGAAAAGGGATGGTGACGACC
* *
45151711 ATC-AATAATTAAAAGGGATGGTGACGACC
1 ATCAAATTATGAAAAGGGATGGTGACGACC
** ** * * *
45151740 ATTGAACAATGAAAAGGGATAGCT-TC-AGCT
1 ATCAAATTATGAAAAGGGAT-GGTGACGA-CC
* ** * ***
45151770 ATCAAATTGTGAAAAGGGATAACT-TCGGGT
1 ATCAAATTATGAAAAGGGAT-GGTGACGACC
* *
45151800 ATCAAATTATGAAACGGGATGGTGATGACC
1 ATCAAATTATGAAAAGGGATGGTGACGACC
* *
45151830 GTCAACA--ATGAAAGGGGATGGTGACGACC
1 ATCAA-ATTATGAAAAGGGATGGTGACGACC
45151859 ATCAAAT
1 ATCAAAT
45151866 AATAATCGAG
Statistics
Matches: 119, Mismatches: 29, Indels: 15
0.73 0.18 0.09
Matches are distributed among these distances:
28 1 0.01
29 52 0.44
30 63 0.53
31 3 0.03
ACGTcount: A:0.39, C:0.14, G:0.26, T:0.22
Consensus pattern (30 bp):
ATCAAATTATGAAAAGGGATGGTGACGACC
Found at i:45151730 original size:29 final size:30
Alignment explanation
Indices: 45151689--45151759 Score: 108
Period size: 29 Copynumber: 2.4 Consensus size: 30
45151679 CTATCAAATT
*
45151689 ATGAAAAGGGATGGTGACGACCA-TCAATA
1 ATGAAAAGGGATGGTGACGACCATTCAACA
* *
45151718 ATTAAAAGGGATGGTGACGACCATTGAACA
1 ATGAAAAGGGATGGTGACGACCATTCAACA
45151748 ATGAAAAGGGAT
1 ATGAAAAGGGAT
45151760 AGCTTCAGCT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
29 22 0.59
30 15 0.41
ACGTcount: A:0.42, C:0.11, G:0.28, T:0.18
Consensus pattern (30 bp):
ATGAAAAGGGATGGTGACGACCATTCAACA
Found at i:45151837 original size:89 final size:89
Alignment explanation
Indices: 45151655--45151848 Score: 205
Period size: 89 Copynumber: 2.2 Consensus size: 89
45151645 CGGCTATCAA
* **
45151655 AACAATGAAAAGGGATAGCCTTGGCTATCAAATTATGAAAAGGGATGGTGACGACCATCAATAAT
1 AACAATGAAAAGGGATAGCCTTAGCTATCAAATTATGAAAAGGGATACTGACGACCATCAATAAT
* * *
45151720 TAAAAGGGATGGTGACGACCATTG
66 GAAAAGGGATGGTGACGACCAGTC
* * ***
45151744 AACAATGAAAAGGGATAG-CTTCAGCTATCAAATTGTGAAAAGGGATAACT-TCGGGTATCAAAT
1 AACAATGAAAAGGGATAGCCTT-AGCTATCAAATTATGAAAAGGGAT-ACTGACGACCATC-AAT
* * *
45151807 TATGAAACGGGATGGTGATGACC-GTC
63 AATGAAAAGGGATGGTGACGACCAGTC
*
45151833 AACAATGAAAGGGGAT
1 AACAATGAAAAGGGAT
45151849 GGTGACGACC
Statistics
Matches: 87, Mismatches: 15, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
88 3 0.03
89 61 0.70
90 23 0.26
ACGTcount: A:0.39, C:0.13, G:0.26, T:0.22
Consensus pattern (89 bp):
AACAATGAAAAGGGATAGCCTTAGCTATCAAATTATGAAAAGGGATACTGACGACCATCAATAAT
GAAAAGGGATGGTGACGACCAGTC
Found at i:45151847 original size:29 final size:29
Alignment explanation
Indices: 45151808--45151863 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
45151798 GTATCAAATT
* *
45151808 ATGAAACGGGATGGTGATGACCGTCAACA
1 ATGAAACGGGATGGTGACGACCATCAACA
*
45151837 ATGAAAGGGGATGGTGACGACCATCAA
1 ATGAAACGGGATGGTGACGACCATCAA
45151864 ATAATAATCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.36, C:0.16, G:0.32, T:0.16
Consensus pattern (29 bp):
ATGAAACGGGATGGTGACGACCATCAACA
Found at i:45151848 original size:119 final size:120
Alignment explanation
Indices: 45151627--45151860 Score: 337
Period size: 119 Copynumber: 2.0 Consensus size: 120
45151617 ATCATCGGCT
* *
45151627 AATGAAAAGGGATAGCTTCGGCTATCAAAACAATGAAAAGGGATAGCCTTGGCTATCAAATTATG
1 AATGAAAAGGGATAGCTTCAGCTATCAAAACAATGAAAAGGGATAGACTTGGCTATCAAATTATG
* *
45151692 AAAAGGGATGGTGACGACCATCAATAATTAAAAGGGATGGTGACGACCATTGAAC
66 AAAAGGGATGGTGACGACCATCAACAATGAAAAGGGATGGTGACGACCATTGAAC
*** *
45151747 AATGAAAAGGGATAGCTTCAGCTATC-AAATTGTGAAAAGGGATA-ACTTCGGGTATCAAATTAT
1 AATGAAAAGGGATAGCTTCAGCTATCAAAACAATGAAAAGGGATAGACTT-GGCTATCAAATTAT
* * * *
45151810 GAAACGGGATGGTGATGACCGTCAACAATGAAAGGGGATGGTGACGACCAT
65 GAAAAGGGATGGTGACGACCATCAACAATGAAAAGGGATGGTGACGACCAT
45151861 CAAATAATAA
Statistics
Matches: 101, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
118 3 0.03
119 73 0.72
120 25 0.25
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.21
Consensus pattern (120 bp):
AATGAAAAGGGATAGCTTCAGCTATCAAAACAATGAAAAGGGATAGACTTGGCTATCAAATTATG
AAAAGGGATGGTGACGACCATCAACAATGAAAAGGGATGGTGACGACCATTGAAC
Found at i:45155366 original size:42 final size:42
Alignment explanation
Indices: 45155307--45155386 Score: 142
Period size: 42 Copynumber: 1.9 Consensus size: 42
45155297 TGAAACTTAG
*
45155307 GCGCCGCTAAAGAACATGTTCTTTAGCAGCGTTTTTTTCTAA
1 GCGCCGCTAAAGAACATGGTCTTTAGCAGCGTTTTTTTCTAA
*
45155349 GCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTT
1 GCGCCGCTAAAGAACATGGTCTTTAGCAGCGTTTTTTT
45155387 ACAAAAACGC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.35
Consensus pattern (42 bp):
GCGCCGCTAAAGAACATGGTCTTTAGCAGCGTTTTTTTCTAA
Found at i:45155472 original size:14 final size:15
Alignment explanation
Indices: 45155453--45155481 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
45155443 GCCCTCCTGT
45155453 AGCAA-CAAATCAAA
1 AGCAACCAAATCAAA
45155467 AGCAACCAAATCAAA
1 AGCAACCAAATCAAA
45155482 CCAGCCAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.62, C:0.24, G:0.07, T:0.07
Consensus pattern (15 bp):
AGCAACCAAATCAAA
Found at i:45155570 original size:9 final size:9
Alignment explanation
Indices: 45155552--45155726 Score: 180
Period size: 9 Copynumber: 19.9 Consensus size: 9
45155542 ATCAATAAAT
45155552 TTATGTAAG
1 TTATGTAAG
*
45155561 TTATGGAAG
1 TTATGTAAG
* *
45155570 TTATTTAAT
1 TTATGTAAG
45155579 TTATGTAAG
1 TTATGTAAG
45155588 TTATGTAAG
1 TTATGTAAG
*
45155597 TTATGTAGG
1 TTATGTAAG
*
45155606 CTATGT-A-
1 TTATGTAAG
* *
45155613 TTATCTAAA
1 TTATGTAAG
*
45155622 TAATGTAAG
1 TTATGTAAG
*
45155631 TTA-GGAAGG
1 TTATGTAA-G
45155640 TTATGT-A-
1 TTATGTAAG
45155647 TTATGTAAG
1 TTATGTAAG
*
45155656 TTATTTAAG
1 TTATGTAAG
*
45155665 TTATGCAAG
1 TTATGTAAG
* *
45155674 TTATTTAAT
1 TTATGTAAG
45155683 TTATGTAAG
1 TTATGTAAG
45155692 TTATGTAAG
1 TTATGTAAG
*
45155701 TTATGTAAT
1 TTATGTAAG
45155710 TTATGTAAG
1 TTATGTAAG
45155719 TTATGTAA
1 TTATGTAA
45155727 TTAGAAATTT
Statistics
Matches: 133, Mismatches: 27, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
7 10 0.08
8 5 0.04
9 117 0.88
10 1 0.01
ACGTcount: A:0.34, C:0.02, G:0.19, T:0.46
Consensus pattern (9 bp):
TTATGTAAG
Found at i:45155633 original size:34 final size:34
Alignment explanation
Indices: 45155590--45155669 Score: 97
Period size: 34 Copynumber: 2.4 Consensus size: 34
45155580 TATGTAAGTT
*
45155590 ATGTAAGTTATGTAGGCTATGTATTATCTAAATA
1 ATGTAAGTTATGAAGGCTATGTATTATCTAAATA
* * * * *
45155624 ATGTAAGTTAGGAAGGTTATGTATTATGTAAGTT
1 ATGTAAGTTATGAAGGCTATGTATTATCTAAATA
*
45155658 ATTTAAGTTATG
1 ATGTAAGTTATG
45155670 CAAGTTATTT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.34, C:0.03, G:0.21, T:0.42
Consensus pattern (34 bp):
ATGTAAGTTATGAAGGCTATGTATTATCTAAATA
Found at i:45155761 original size:20 final size:20
Alignment explanation
Indices: 45155738--45155833 Score: 85
Period size: 20 Copynumber: 5.0 Consensus size: 20
45155728 TAGAAATTTG
45155738 ATCTTAATATTATATAAGTA
1 ATCTTAATATTATATAAGTA
45155758 ATCTTAATATTATATAAGCT-
1 ATCTTAATATTATATAAG-TA
* * ** *
45155778 AT-GTAAT-TCGA-A-ATTTG
1 ATCTTAATAT-TATATAAGTA
*
45155795 ATCTTAATATTATAAAAGTA
1 ATCTTAATATTATATAAGTA
45155815 ATCTTAATATTATATAAGT
1 ATCTTAATATTATATAAGT
45155834 TATGTAATTC
Statistics
Matches: 59, Mismatches: 10, Indels: 14
0.71 0.12 0.17
Matches are distributed among these distances:
16 1 0.02
17 3 0.05
18 7 0.12
19 7 0.12
20 40 0.68
21 1 0.02
ACGTcount: A:0.43, C:0.06, G:0.07, T:0.44
Consensus pattern (20 bp):
ATCTTAATATTATATAAGTA
Found at i:45155784 original size:57 final size:57
Alignment explanation
Indices: 45155706--45155870 Score: 269
Period size: 57 Copynumber: 2.9 Consensus size: 57
45155696 GTAAGTTATG
* *
45155706 TAAT-TTATGTAAGTTATGTAATTAGAAATTTGATCTTAATATTATATAAGTAATCT
1 TAATATTATATAAGTTATGTAATTCGAAATTTGATCTTAATATTATATAAGTAATCT
* *
45155762 TAATATTATATAAGCTATGTAATTCGAAATTTGATCTTAATATTATAAAAGTAATCT
1 TAATATTATATAAGTTATGTAATTCGAAATTTGATCTTAATATTATATAAGTAATCT
* *
45155819 TAATATTATATAAGTTATGTAATTCGAAATTTTATCTTAATATTGTATAAGT
1 TAATATTATATAAGTTATGTAATTCGAAATTTGATCTTAATATTATATAAGT
45155871 TATGTAATTC
Statistics
Matches: 100, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
56 4 0.04
57 96 0.96
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.45
Consensus pattern (57 bp):
TAATATTATATAAGTTATGTAATTCGAAATTTGATCTTAATATTATATAAGTAATCT
Found at i:45155868 original size:37 final size:37
Alignment explanation
Indices: 45155815--45155952 Score: 231
Period size: 37 Copynumber: 3.7 Consensus size: 37
45155805 TATAAAAGTA
*
45155815 ATCTTAATATTATATAAGTTATGTAATTCGAAATTTT
1 ATCTTAATATTATATAAGTTATGTAATTCGATATTTT
*
45155852 ATCTTAATATTGTATAAGTTATGTAATTCGATATTTT
1 ATCTTAATATTATATAAGTTATGTAATTCGATATTTT
* *
45155889 ATCTTAATATTGTATAAGTTATGTAATTTGATATTTT
1 ATCTTAATATTATATAAGTTATGTAATTCGATATTTT
*
45155926 ATCTTAACATTATATAAGTTATGTAAT
1 ATCTTAATATTATATAAGTTATGTAAT
45155953 ATTATATAAA
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 96 1.00
ACGTcount: A:0.36, C:0.05, G:0.09, T:0.50
Consensus pattern (37 bp):
ATCTTAATATTATATAAGTTATGTAATTCGATATTTT
Found at i:45155961 original size:56 final size:57
Alignment explanation
Indices: 45155887--45156022 Score: 202
Period size: 56 Copynumber: 2.4 Consensus size: 57
45155877 ATTCGATATT
* * * *
45155887 TTATCTTAATATTGTATAAGTTATGTAATTTGATATTTTATCTTAACATTATATAAG
1 TTATCGTAATATTATATAAGTTATGTAATTAGAAATTTTATCTTAACATTATATAAG
* *
45155944 TTAT-GTAATATTATATAAATTATGTAATTAGAAATTTTATCTTAATATTATATAAG
1 TTATCGTAATATTATATAAGTTATGTAATTAGAAATTTTATCTTAACATTATATAAG
*
45156000 TTATCTTAATATTATATAAGTTA
1 TTATCGTAATATTATATAAGTTA
45156023 AGAAATTTTA
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
56 50 0.71
57 20 0.29
ACGTcount: A:0.39, C:0.04, G:0.07, T:0.50
Consensus pattern (57 bp):
TTATCGTAATATTATATAAGTTATGTAATTAGAAATTTTATCTTAACATTATATAAG
Found at i:45158518 original size:19 final size:19
Alignment explanation
Indices: 45158494--45158535 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
45158484 GGACTACGTT
*
45158494 GGGGAACTGTTAGGGATTA
1 GGGGAAATGTTAGGGATTA
* *
45158513 GGGGAAATTTTAGGGATTT
1 GGGGAAATGTTAGGGATTA
45158532 GGGG
1 GGGG
45158536 GATATGAGAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.45, T:0.29
Consensus pattern (19 bp):
GGGGAAATGTTAGGGATTA
Found at i:45159600 original size:20 final size:20
Alignment explanation
Indices: 45159575--45159672 Score: 81
Period size: 20 Copynumber: 4.8 Consensus size: 20
45159565 ATTTCCAAAC
* *
45159575 CCCTAATCTCAAACACTAAA
1 CCCTAAACTCAAAAACTAAA
45159595 CCCTAAACTCAAAAACCTAAA
1 CCCTAAACTCAAAAA-CTAAA
* ** *
45159616 TCCC-AAACCCCAAACCCCAAA
1 -CCCTAAA-CTCAAAAACTAAA
* *
45159637 CCCTAACCCCAAAAACTAAA
1 CCCTAAACTCAAAAACTAAA
*
45159657 CCCCAAACTCAAAAAC
1 CCCTAAACTCAAAAAC
45159673 CAAAAATCCC
Statistics
Matches: 61, Mismatches: 13, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
20 39 0.64
21 14 0.23
22 8 0.13
ACGTcount: A:0.48, C:0.41, G:0.00, T:0.11
Consensus pattern (20 bp):
CCCTAAACTCAAAAACTAAA
Found at i:45159602 original size:14 final size:13
Alignment explanation
Indices: 45159592--45159664 Score: 56
Period size: 14 Copynumber: 5.3 Consensus size: 13
45159582 CTCAAACACT
*
45159592 AAACCCTAAACTCA
1 AAACCCTAAAC-CC
*
45159606 AAAACCTAAATCCC
1 AAACCCTAAA-CCC
*
45159620 AAACCCCAAACCCC
1 AAACCCTAAA-CCC
*
45159634 AAACCCTAACCCC
1 AAACCCTAAACCC
**
45159647 AAAAACTAAACCCC
1 AAACCCTAAA-CCC
45159661 AAAC
1 AAAC
45159665 TCAAAAACCA
Statistics
Matches: 46, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
13 10 0.22
14 35 0.76
15 1 0.02
ACGTcount: A:0.49, C:0.42, G:0.00, T:0.08
Consensus pattern (13 bp):
AAACCCTAAACCC
Found at i:45159675 original size:27 final size:27
Alignment explanation
Indices: 45159627--45159678 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
45159617 CCCAAACCCC
* **
45159627 AAACCCCAAACCCTAACCCCAAAAACT
1 AAACCCCAAACCCAAAAACCAAAAACT
*
45159654 AAACCCCAAACTCAAAAACCAAAAA
1 AAACCCCAAACCCAAAAACCAAAAA
45159679 TCCCAAATCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.56, C:0.38, G:0.00, T:0.06
Consensus pattern (27 bp):
AAACCCCAAACCCAAAAACCAAAAACT
Found at i:45160743 original size:41 final size:41
Alignment explanation
Indices: 45160696--45160801 Score: 151
Period size: 41 Copynumber: 2.6 Consensus size: 41
45160686 AGGTTTTTTT
* * *
45160696 GCGGCGCTTTTCAGAAAATGCCGCTAAAGACAAGATCATTA
1 GCGGCGCTTTTCAAAAAACGCCGCTAAAGACAAGAGCATTA
* *
45160737 GCGGCGC-TTTCTAAAAAACGCCGCTAAAGGCAGGAGCATTA
1 GCGGCGCTTTTC-AAAAAACGCCGCTAAAGACAAGAGCATTA
45160778 GCGGCGCTTTTCAAAAAACGCCGC
1 GCGGCGCTTTTCAAAAAACGCCGC
45160802 AACAGGGACA
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
40 4 0.07
41 50 0.86
42 4 0.07
ACGTcount: A:0.31, C:0.25, G:0.25, T:0.19
Consensus pattern (41 bp):
GCGGCGCTTTTCAAAAAACGCCGCTAAAGACAAGAGCATTA
Found at i:45160916 original size:154 final size:154
Alignment explanation
Indices: 45160578--45160865 Score: 395
Period size: 155 Copynumber: 1.9 Consensus size: 154
45160568 TTTTATTACT
* * * * * * *
45160578 ATTAGCGGCGCTTCCTCAAAAACGTCGCTAACGGCCGGATCATTAGCGACGCTTTTCACAAAACG
1 ATTAGCGGCGCTTTCTAAAAAACGCCGCTAAAGGCAGGAGCATTAGCGACGCTTTTCAAAAAACG
* *
45160643 CCGCTAAAGGCCCAAAAACACAGAAAACAGCGTCGTTGGCCTTAGGTTTTTTTGCGGCGCTTTTC
66 CCGCTAAAGGCACAAAAACACAGAAAACAGCGTCGTTGGCCTTAGGTTTTTTTGCGGCACTTTTC
*
45160708 AGAAAATGCCGCTAAAGACAAGATC
131 AGAAAAT-CCGCTAAAGACAAGAGC
*
45160733 ATTAGCGGCGCTTTCTAAAAAACGCCGCTAAAGGCAGGAGCATTAGCGGCGCTTTTCAAAAAACG
1 ATTAGCGGCGCTTTCTAAAAAACGCCGCTAAAGGCAGGAGCATTAGCGACGCTTTTCAAAAAACG
* *
45160798 CCGC-AACAGGGACAAAAACGCA-AAAAC-GACGTCGTTGGCCTTAGG-TTTTTTGCGGCACTTT
66 CCGCTAA-AGGCACAAAAACACAGAAAACAG-CGTCGTTGGCCTTAGGTTTTTTTGCGGCACTTT
*
45160859 TTAGAAA
129 TCAGAAA
45160866 TCGTCATTAA
Statistics
Matches: 118, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
153 22 0.19
154 23 0.19
155 73 0.62
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.22
Consensus pattern (154 bp):
ATTAGCGGCGCTTTCTAAAAAACGCCGCTAAAGGCAGGAGCATTAGCGACGCTTTTCAAAAAACG
CCGCTAAAGGCACAAAAACACAGAAAACAGCGTCGTTGGCCTTAGGTTTTTTTGCGGCACTTTTC
AGAAAATCCGCTAAAGACAAGAGC
Found at i:45160981 original size:114 final size:113
Alignment explanation
Indices: 45160770--45160982 Score: 302
Period size: 114 Copynumber: 1.9 Consensus size: 113
45160760 CTAAAGGCAG
45160770 GAGCATTAGCGGCGCTTTTCAAAAAACGCCGCAACAGGGACAAAAACGCAAAAACGACGTCGTTG
1 GAGCATTAGCGGCGCTTTTCAAAAAACGCCGCAACAGGGACAAAAACGCAAAAACGACGTCGTTG
*
45160835 GCCTTAGGTTTTTTGCGGCACTTTTTAGAAATCGTCATTAAGTCTCCC
66 GCCTTAGGTTTTTTGCGGCACTTTTCAGAAATCGTCATTAAGTCTCCC
* * ** * * *
45160883 GAGCATTAGCGGCG-TTTTTAGAAAAACGCCGCTACAGGTCCAAAAACTCAGTAAACGGCGTCGT
1 GAGCATTAGCGGCGCTTTTCA-AAAAACGCCGCAACAGGGACAAAAACGCA-AAAACGACGTCGT
* * *
45160947 TGGCCTTATGTTTTTTGCGGCGCTTTTCATAAATCG
64 TGGCCTTAGGTTTTTTGCGGCACTTTTCAGAAATCG
45160983 CCGCTAATTC
Statistics
Matches: 87, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
112 5 0.06
113 39 0.45
114 43 0.49
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (113 bp):
GAGCATTAGCGGCGCTTTTCAAAAAACGCCGCAACAGGGACAAAAACGCAAAAACGACGTCGTTG
GCCTTAGGTTTTTTGCGGCACTTTTCAGAAATCGTCATTAAGTCTCCC
Found at i:45164773 original size:21 final size:21
Alignment explanation
Indices: 45164747--45164791 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
45164737 GTCGAGTCGT
**
45164747 AAAATTATTTAAGTTAAATTA
1 AAAATTAAATAAGTTAAATTA
*
45164768 AAAATTAAATATGTTAAATTA
1 AAAATTAAATAAGTTAAATTA
45164789 AAA
1 AAA
45164792 TCTTGTTACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (21 bp):
AAAATTAAATAAGTTAAATTA
Found at i:45180361 original size:21 final size:21
Alignment explanation
Indices: 45180320--45180362 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
45180310 TTCATTGCAT
* *
45180320 AATCAAATAACAATTATGCTC
1 AATCAAATAACAATAAAGCTC
*
45180341 AATCAAATAGCAATAAAGCTC
1 AATCAAATAACAATAAAGCTC
45180362 A
1 A
45180363 CTCTCTCGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.51, C:0.19, G:0.07, T:0.23
Consensus pattern (21 bp):
AATCAAATAACAATAAAGCTC
Found at i:45193203 original size:120 final size:120
Alignment explanation
Indices: 45192994--45193219 Score: 291
Period size: 120 Copynumber: 1.9 Consensus size: 120
45192984 GCTCCTCGTT
*
45192994 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATACCTTCGGGACTTAACCCGG
* *
45193059 ATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTTGCA
66 ATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTTGCA
* * **
45193114 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGT-ATCTCGCACAAATACCTTC-GGATCTTAGT
1 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAAT-TCGCACAAATACCTTCGGGA-CTTAAC
* *
45193175 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
62 CCGGATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAGCCCGGA
45193220 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
119 8 0.09
120 74 0.80
121 10 0.11
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATACCTTCGGGACTTAACCCGG
ATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTTGCA
Found at i:45193219 original size:40 final size:40
Alignment explanation
Indices: 45192994--45193219 Score: 241
Period size: 40 Copynumber: 5.7 Consensus size: 40
45192984 GCTCCTCGTT
* * *
45192994 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
* *
45193034 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCA
45193074 CAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTATCTT-GCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTA-CTTCGCA
* *
45193114 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTA-TCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTACT-TCGCA
* * * *
45193154 CAAATACCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-ACTTCGCA
45193195 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
45193220 CATCATTCAA
Statistics
Matches: 160, Mismatches: 15, Indels: 22
0.81 0.08 0.11
Matches are distributed among these distances:
38 1 0.01
39 5 0.03
40 139 0.87
41 14 0.09
42 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
Found at i:45195961 original size:38 final size:38
Alignment explanation
Indices: 45195910--45195986 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
45195900 GTACATTACA
45195910 TAGTCCATTTTAGGGATTGATGACTTACTTATTCCGTG
1 TAGTCCATTTTAGGGATTGATGACTTACTTATTCCGTG
45195948 TAGTCCATTTTAGGGATTGATGACTTACTTATTCCGTG
1 TAGTCCATTTTAGGGATTGATGACTTACTTATTCCGTG
45195986 T
1 T
45195987 CTTTAGAATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.21, C:0.16, G:0.21, T:0.43
Consensus pattern (38 bp):
TAGTCCATTTTAGGGATTGATGACTTACTTATTCCGTG
Found at i:45198262 original size:25 final size:25
Alignment explanation
Indices: 45198234--45198313 Score: 92
Period size: 25 Copynumber: 3.2 Consensus size: 25
45198224 AGCTGTGAAC
*
45198234 CGGTATGCTCAT-TTGAGCTA-AAGAT
1 CGGTATGCTC-TCATGAGCTATAA-AT
45198259 CGGTATGCTCTCATGAGCTATAAAT
1 CGGTATGCTCTCATGAGCTATAAAT
* * *
45198284 CAGTATGCTCTCATAAGCCATAAAT
1 CGGTATGCTCTCATGAGCTATAAAT
45198309 CGGTA
1 CGGTA
45198314 ATCCTAATAA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
24 1 0.02
25 45 0.94
26 2 0.04
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (25 bp):
CGGTATGCTCTCATGAGCTATAAAT
Found at i:45202218 original size:16 final size:16
Alignment explanation
Indices: 45202197--45202231 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
45202187 TTGTGTTTTG
*
45202197 TTTTGATTGCATGGCA
1 TTTTGAATGCATGGCA
*
45202213 TTTTGAATGCATGGTA
1 TTTTGAATGCATGGCA
45202229 TTT
1 TTT
45202232 CGTCATAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.20, C:0.09, G:0.23, T:0.49
Consensus pattern (16 bp):
TTTTGAATGCATGGCA
Found at i:45205814 original size:11 final size:11
Alignment explanation
Indices: 45205800--45205838 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
45205790 AAATGATGAG
45205800 AAAAGAAAAGA
1 AAAAGAAAAGA
*
45205811 AAAAGAGAAGGA
1 AAAAGA-AAAGA
45205823 AAAAGAAAAGA
1 AAAAGAAAAGA
45205834 AAAAG
1 AAAAG
45205839 GAGATGCCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 15 0.60
12 10 0.40
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (11 bp):
AAAAGAAAAGA
Found at i:45208207 original size:51 final size:51
Alignment explanation
Indices: 45208126--45208225 Score: 164
Period size: 51 Copynumber: 2.0 Consensus size: 51
45208116 GACTGAAAGC
*
45208126 AGCGAATCTTATTTCCCTAGCATTGTAGTGGAACAGATTAAAGCTAAAGGT
1 AGCGAATCTTATTTCCCTAGCATTGCAGTGGAACAGATTAAAGCTAAAGGT
* * *
45208177 AGCGAATCTTGTTTCCCTGGCATTGCAGTGGAATAGATTAAAGCTAAAG
1 AGCGAATCTTATTTCCCTAGCATTGCAGTGGAACAGATTAAAGCTAAAG
45208226 TGGAGTAGAT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (51 bp):
AGCGAATCTTATTTCCCTAGCATTGCAGTGGAACAGATTAAAGCTAAAGGT
Found at i:45208278 original size:72 final size:72
Alignment explanation
Indices: 45208160--45208297 Score: 177
Period size: 72 Copynumber: 1.9 Consensus size: 72
45208150 GTAGTGGAAC
* * * * * * *
45208160 AGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCATTGCAGTGGAATAGATTAAAGCTAAA
1 AGATTAAAGCTAAAGGCAGCGAATCTTATCTCCCTAGCATTACAGTGGAACAAATTAAAGCTAAA
45208225 GTGGAGT
66 GTGGAGT
* * * *
45208232 AGATTAAATCTGAAGGCAGCGAATCTTATCTCCTTAGCGTTACAGTGGAACAAATTAAAGCTAAA
1 AGATTAAAGCTAAAGGCAGCGAATCTTATCTCCCTAGCATTACAGTGGAACAAATTAAAGCTAAA
45208297 G
66 G
45208298 GTAGCGAATA
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
72 55 1.00
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (72 bp):
AGATTAAAGCTAAAGGCAGCGAATCTTATCTCCCTAGCATTACAGTGGAACAAATTAAAGCTAAA
GTGGAGT
Found at i:45208369 original size:51 final size:51
Alignment explanation
Indices: 45208232--45208371 Score: 172
Period size: 51 Copynumber: 2.7 Consensus size: 51
45208222 AAAGTGGAGT
* * * * *
45208232 AGATTAAATCTGAAGGCAGCGAATCTTATCTCCTTAGCGTTACAGTGGAAC
1 AGATTAAAGCTAAAGGCAGCGAATCTTATTTCCATGGCGTTACAGTGGAAC
* * * * * *
45208283 AAATTAAAGCTAAAGGTAGCGAATATTGTTTCCATGGTGTTGCAGTGGAAC
1 AGATTAAAGCTAAAGGCAGCGAATCTTATTTCCATGGCGTTACAGTGGAAC
*
45208334 AGATTAAAGCTAAAGGCAGTGAATCTTATTTCCATGGC
1 AGATTAAAGCTAAAGGCAGCGAATCTTATTTCCATGGC
45208372 ATTAAGACTG
Statistics
Matches: 72, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
51 72 1.00
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.29
Consensus pattern (51 bp):
AGATTAAAGCTAAAGGCAGCGAATCTTATTTCCATGGCGTTACAGTGGAAC
Found at i:45208482 original size:138 final size:133
Alignment explanation
Indices: 45208241--45208741 Score: 529
Period size: 138 Copynumber: 3.8 Consensus size: 133
45208231 TAGATTAAAT
* *
45208241 CTGAAGGCAGCGAATCTTATCTCCTTAGCGTTACAGTGGAACAAATTAAAGCTAAAGGTAGCGAA
1 CTGAAGGCAGCGAATCTTATCTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
* * * *
45208306 TATTGTTTCCATGGTGTTGCAGTGGAACAGATTAAAGCTAAAGGCAGTGAATCTTATTTCCATGG
66 TCTTGTTTCCCTAGCGTTGCAGTGGAACAGATTAAAGCT-AA-GCAGTGAATCTTA-TTCC-TGG
45208371 CATTAAG
127 CATTAAG
* * * ** * *
45208378 ACTGAAGGCAGCGAATCTTATTTCCCTGGCATTGTAGTGGAACAGATTAAAGGTAAAGGTAGCAA
1 -CTGAAGGCAGCGAATCTTATCTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAGGTAGCGA
* * * * * * * * *
45208443 ATTTTGCTTCCCTAGTGTTGTAATGGAATAGATTAAAGCT--GAAGTG-----GA---GTGG-AT
65 ATCTTGTTTCCCTAGCGTTGCAGTGGAACAGATTAAAGCTAAGCAGTGAATCTTATTCCTGGCAT
45208497 TAAAG
130 T-AAG
45208502 CTGAAGGCAGCGAATCTTATCTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
1 CTGAAGGCAGCGAATCTTATCTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
* * * * * *
45208567 TCTTGTTTCCCTGGCATTGTAGCGGAGCAGATTAGAGCTGAACGCAGTGAATCTTATCTCTCTGG
66 TCTTGTTTCCCTAGCGTTGCAGTGGAACAGATTAAAGCT-AA-GCAGTGAATCTTAT-TC-CTGG
*
45208632 CGTTAAGG
127 CATTAA-G
* **
45208640 CTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGTAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
1 CTGAAGGCAGCGAATCTTATCTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
*
45208705 TCTTGTTTCCCTAGCGTTGCAGTGGAATAGATTAAAG
66 TCTTGTTTCCCTAGCGTTGCAGTGGAACAGATTAAAG
45208742 TTGAAGTGGA
Statistics
Matches: 296, Mismatches: 50, Indels: 34
0.78 0.13 0.09
Matches are distributed among these distances:
123 90 0.30
124 6 0.02
127 5 0.02
129 1 0.00
132 1 0.00
134 5 0.02
137 5 0.02
138 183 0.62
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (133 bp):
CTGAAGGCAGCGAATCTTATCTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
TCTTGTTTCCCTAGCGTTGCAGTGGAACAGATTAAAGCTAAGCAGTGAATCTTATTCCTGGCATT
AAG
Found at i:45208511 original size:261 final size:260
Alignment explanation
Indices: 45208047--45208764 Score: 1058
Period size: 261 Copynumber: 2.8 Consensus size: 260
45208037 ACGACAAATC
** * * *
45208047 TTGTTTCCATGGTGTCATAGCGGAGCAGATTAAAGTTGAAGGTAGCGAATCTTATCTCCCTGGCG
1 TTGTTTCCATGGTGTTGTAGCGGAGCAGATTAAAGCTGAAGGCAGTGAATCTTATCT-CCTGGCG
* *
45208112 TTAAGACTGAAAGCAGCGAATCTTATTTCCCTAGCATTGTAGTGGAACAGATTAAAGCTAAAGGT
65 TTAAGACTGAAGGCAGCGAATCTTATTTCCCTGGCATTGTAGTGGAACAGATTAAAGCTAAAGGT
* * * *
45208177 AGCGAATCTTGTTTCCCTGGCATTGCAGTGGAATAGATTAAAGCTAAAGTGGAGTAGATTAAATC
130 AGCGAATCTTGTTTCCCTAGCGTTGCAGTGGAATAGATTAAAGCTGAAGTGGAGTAGATTAAAGC
45208242 TGAAGGCAGCGAATCTTATCTCCTTAGCGTTACAGTGGAACAAATTAAAGCTAAAGGTAGCGAAT
195 TGAAGGCAGCGAATCTTATCTCCTTAGCGTTACAGTGGAACAAATTAAAGCTAAAGGTAGCGAAT
45208307 A
260 A
* * * * * *
45208308 TTGTTTCCATGGTGTTGCAGTGGAACAGATTAAAGCTAAAGGCAGTGAATCTTATTTCCATGGCA
1 TTGTTTCCATGGTGTTGTAGCGGAGCAGATTAAAGCTGAAGGCAGTGAATCTTATCTCC-TGGCG
*
45208373 TTAAGACTGAAGGCAGCGAATCTTATTTCCCTGGCATTGTAGTGGAACAGATTAAAGGTAAAGGT
65 TTAAGACTGAAGGCAGCGAATCTTATTTCCCTGGCATTGTAGTGGAACAGATTAAAGCTAAAGGT
* * * * * * *
45208438 AGCAAATTTTGCTTCCCTAGTGTTGTAATGGAATAGATTAAAGCTGAAGTGGAGTGGATTAAAGC
130 AGCGAATCTTGTTTCCCTAGCGTTGCAGTGGAATAGATTAAAGCTGAAGTGGAGTAGATTAAAGC
* *
45208503 TGAAGGCAGCGAATCTTATCTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAGGTAGCGAAT
195 TGAAGGCAGCGAATCTTATCTCCTTAGCGTTACAGTGGAACAAATTAAAGCTAAAGGTAGCGAAT
*
45208568 C
260 A
* ** * *
45208569 TTGTTTCCCTGGCATTGTAGCGGAGCAGATTAGAGCTGAACGCAGTGAATCTTATCTCTCTGGCG
1 TTGTTTCCATGGTGTTGTAGCGGAGCAGATTAAAGCTGAAGGCAGTGAATCTTATCTC-CTGGCG
* * *
45208634 TTAAGGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGTAGTGGAACAGATTAAAGCTAAAGGT
65 TTAAGACTGAAGGCAGCGAATCTTATTTCCCTGGCATTGTAGTGGAACAGATTAAAGCTAAAGGT
* **
45208699 AGCGAATCTTGTTTCCCTAGCGTTGCAGTGGAATAGATTAAAGTTGAAGTGGAACAGATTAAAGC
130 AGCGAATCTTGTTTCCCTAGCGTTGCAGTGGAATAGATTAAAGCTGAAGTGGAGTAGATTAAAGC
45208764 T
195 T
45208765 AAAGTAGAGC
Statistics
Matches: 402, Mismatches: 53, Indels: 4
0.88 0.12 0.01
Matches are distributed among these distances:
260 2 0.00
261 399 0.99
262 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (260 bp):
TTGTTTCCATGGTGTTGTAGCGGAGCAGATTAAAGCTGAAGGCAGTGAATCTTATCTCCTGGCGT
TAAGACTGAAGGCAGCGAATCTTATTTCCCTGGCATTGTAGTGGAACAGATTAAAGCTAAAGGTA
GCGAATCTTGTTTCCCTAGCGTTGCAGTGGAATAGATTAAAGCTGAAGTGGAGTAGATTAAAGCT
GAAGGCAGCGAATCTTATCTCCTTAGCGTTACAGTGGAACAAATTAAAGCTAAAGGTAGCGAATA
Found at i:45208598 original size:51 final size:51
Alignment explanation
Indices: 45208494--45208632 Score: 143
Period size: 51 Copynumber: 2.7 Consensus size: 51
45208484 AAGTGGAGTG
* * * *
45208494 GATTAAAGCTGAAGGCAGCGAATCTTATCTCCTTGGCGTTACAGTGGAACA
1 GATTAAAGCTAAAGGCAGCGAATCTTATCTCCCTGGCATTACAGCGGAACA
* * * ** *
45208545 GATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCATTGTAGCGGAGCA
1 GATTAAAGCTAAAGGCAGCGAATCTTATCTCCCTGGCATTACAGCGGAACA
* * * * *
45208596 GATTAGAGCTGAACGCAGTGAATCTTATCTCTCTGGC
1 GATTAAAGCTAAAGGCAGCGAATCTTATCTCCCTGGC
45208633 GTTAAGGCTG
Statistics
Matches: 70, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
51 70 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.27
Consensus pattern (51 bp):
GATTAAAGCTAAAGGCAGCGAATCTTATCTCCCTGGCATTACAGCGGAACA
Found at i:45208707 original size:87 final size:87
Alignment explanation
Indices: 45208547--45208708 Score: 207
Period size: 87 Copynumber: 1.9 Consensus size: 87
45208537 GTGGAACAGA
* * * * *
45208547 TTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCATTGTAGCGGAGCAGATTAGAGCTGAACGC
1 TTAAAGCTAAAGGCAGCGAATCTTATTTCCCTGGCATTGTAGCGGAACAGATTAAAGCTAAACGC
*
45208612 AGTGAATCTTATCTCTCTGGCG
66 AGCGAATCTTATCTCTCTGGCG
* * * * * * *
45208634 TTAAGGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGTAGTGGAACAGATTAAAGCTAAAGGT
1 TTAAAGCTAAAGGCAGCGAATCTTATTTCCCTGGCATTGTAGCGGAACAGATTAAAGCTAAACGC
45208699 AGCGAATCTT
66 AGCGAATCTT
45208709 GTTTCCCTAG
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
87 62 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (87 bp):
TTAAAGCTAAAGGCAGCGAATCTTATTTCCCTGGCATTGTAGCGGAACAGATTAAAGCTAAACGC
AGCGAATCTTATCTCTCTGGCG
Found at i:45208729 original size:51 final size:51
Alignment explanation
Indices: 45208634--45208741 Score: 144
Period size: 51 Copynumber: 2.1 Consensus size: 51
45208624 CTCTCTGGCG
* * * * *
45208634 TTAAGGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGTAGTGGAACAGA
1 TTAAAGCTAAAGGCAGCGAATCTTATTTCCCTAGCGTTGCAGTGGAACAGA
* * *
45208685 TTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTAGCGTTGCAGTGGAATAGA
1 TTAAAGCTAAAGGCAGCGAATCTTATTTCCCTAGCGTTGCAGTGGAACAGA
45208736 TTAAAG
1 TTAAAG
45208742 TTGAAGTGGA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.30
Consensus pattern (51 bp):
TTAAAGCTAAAGGCAGCGAATCTTATTTCCCTAGCGTTGCAGTGGAACAGA
Found at i:45208749 original size:21 final size:21
Alignment explanation
Indices: 45208720--45208762 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
45208710 TTTCCCTAGC
* *
45208720 GTTGCAGTGGAATAGATTAAA
1 GTTGAAGTGGAACAGATTAAA
45208741 GTTGAAGTGGAACAGATTAAA
1 GTTGAAGTGGAACAGATTAAA
45208762 G
1 G
45208763 CTAAAGTAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.30, T:0.26
Consensus pattern (21 bp):
GTTGAAGTGGAACAGATTAAA
Found at i:45208769 original size:21 final size:21
Alignment explanation
Indices: 45208725--45208778 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
45208715 CTAGCGTTGC
* * *
45208725 AGTGGAATAGATTAAAGTTGA
1 AGTGGAACAGATTAAAGCTAA
45208746 AGTGGAACAGATTAAAGCTAA
1 AGTGGAACAGATTAAAGCTAA
* *
45208767 AGTAGAGCAGAT
1 AGTGGAACAGAT
45208779 CATGGCAAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.44, C:0.06, G:0.28, T:0.22
Consensus pattern (21 bp):
AGTGGAACAGATTAAAGCTAA
Found at i:45208835 original size:44 final size:42
Alignment explanation
Indices: 45208785--45208955 Score: 148
Period size: 44 Copynumber: 4.0 Consensus size: 42
45208775 AGATCATGGC
* *
45208785 AAATCTTATTTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCA
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CA
* * * **
45208828 ATAATCTTATCTCTCTGAAGTTGCAGTGGAGCGGATTGAAGTG
1 A-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCA
* *
45208871 AAGTCTTATCCCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGC-
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT--A-A-AGCA
* * * *
45208916 GAATCTTAT-TCCCTTAGCGTTGCAGTGGAACAGATTAAAG
1 AAATCTTATCTCCCTGA-AGTTGCAGTGGAGCAGATTAAAG
45208956 ATGAAGGTAG
Statistics
Matches: 103, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
41 2 0.02
42 32 0.31
43 3 0.03
44 39 0.38
45 25 0.24
46 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (42 bp):
AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCA
Found at i:45208891 original size:42 final size:44
Alignment explanation
Indices: 45208786--45208910 Score: 146
Period size: 42 Copynumber: 2.9 Consensus size: 44
45208776 GATCATGGCA
** * *
45208786 AATCTTATTTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCAAT
1 AATCTTATCCCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAAT
* * * **
45208830 AATCTTATCTCTCTGAAGTTGCAGTGGAGCGGATTGAAG-TGA-
1 AATCTTATCCCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAAT
*
45208872 AGTCTTATCCCCCTGAAGTTGCAGTGGAGCAGATTGAAG
1 AATCTTATCCCCCTGAAGTTGCAGTGGAGCAGATTGAAG
45208911 ATAGCGAATC
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
42 35 0.50
43 1 0.01
44 34 0.49
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (44 bp):
AATCTTATCCCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAAT
Found at i:45208987 original size:51 final size:51
Alignment explanation
Indices: 45208906--45209006 Score: 159
Period size: 51 Copynumber: 2.0 Consensus size: 51
45208896 TGGAGCAGAT
*
45208906 TGAAGATAGCGAATCTTATTCCCTTAGCGTTGCAGTGGAACAGATTAAAGA
1 TGAAGATAGCAAATCTTATTCCCTTAGCGTTGCAGTGGAACAGATTAAAGA
* *
45208957 TGAAGGTAGCAAATCTTATTTCCC-TGGCGTTGCAGTGGAACAGATTAAAG
1 TGAAGATAGCAAATCTTA-TTCCCTTAGCGTTGCAGTGGAACAGATTAAAG
45209007 CTACAAATTA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
51 41 0.89
52 5 0.11
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.28
Consensus pattern (51 bp):
TGAAGATAGCAAATCTTATTCCCTTAGCGTTGCAGTGGAACAGATTAAAGA
Found at i:45210711 original size:24 final size:24
Alignment explanation
Indices: 45210677--45210723 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
45210667 AATATGCTTG
45210677 ATTTTTTATTATT-T-TTTTAAAA
1 ATTTTTTATTATTCTGTTTTAAAA
45210699 ATTTATTTCATTATTCTGTTTTAAA
1 ATTT-TTT-ATTATTCTGTTTTAAA
45210724 TATATTTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 4 0.19
23 3 0.14
24 6 0.29
25 1 0.05
26 7 0.33
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (24 bp):
ATTTTTTATTATTCTGTTTTAAAA
Found at i:45210872 original size:25 final size:25
Alignment explanation
Indices: 45210770--45210918 Score: 96
Period size: 25 Copynumber: 6.2 Consensus size: 25
45210760 AAGCTTAATA
* * *
45210770 TATTTTTAAACTTATCAT-CAATAT
1 TATTTTTAAATTTATCATGTATTAT
* *
45210794 TA-TTTT-AATTTATAATATATTAT
1 TATTTTTAAATTTATCATGTATTAT
* * * **
45210817 TA-TTTTAAATCTATGAT-AAACA-
1 TATTTTTAAATTTATCATGTATTAT
45210839 TATTTTTAAATTTATCATGTATT-T
1 TATTTTTAAATTTATCATGTATTAT
* *
45210863 TTTTATTTAAATTCATCATGTATTAT
1 TATT-TTTAAATTTATCATGTATTAT
* * * *
45210889 TATTTTAAAATTTATCGTCTATGAT
1 TATTTTTAAATTTATCATGTATTAT
45210914 TATTT
1 TATTT
45210919 AGATTTATTG
Statistics
Matches: 96, Mismatches: 22, Indels: 13
0.73 0.17 0.10
Matches are distributed among these distances:
22 10 0.10
23 29 0.30
24 14 0.15
25 39 0.41
26 4 0.04
ACGTcount: A:0.35, C:0.07, G:0.03, T:0.55
Consensus pattern (25 bp):
TATTTTTAAATTTATCATGTATTAT
Found at i:45211193 original size:24 final size:24
Alignment explanation
Indices: 45211162--45211209 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
45211152 GTTTAAATTC
*
45211162 TCTTTTAAATATGTTTATATATAT
1 TCTTTTAAATATATTTATATATAT
45211186 TCTTTTAAATATATTTATATATAT
1 TCTTTTAAATATATTTATATATAT
45211210 AATTTATTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.58
Consensus pattern (24 bp):
TCTTTTAAATATATTTATATATAT
Found at i:45223209 original size:20 final size:19
Alignment explanation
Indices: 45223173--45223220 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 19
45223163 ACCTGACAGA
45223173 AGAAAATAAAAGAAAAATT
1 AGAAAATAAAAGAAAAATT
**
45223192 AGAAAATTAAAATTAAAA-T
1 AGAAAA-TAAAAGAAAAATT
45223211 A-AAAATAAAA
1 AGAAAATAAAA
45223221 ACAAGATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
17 5 0.19
18 4 0.15
19 8 0.31
20 9 0.35
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (19 bp):
AGAAAATAAAAGAAAAATT
Found at i:45223219 original size:17 final size:17
Alignment explanation
Indices: 45223175--45223244 Score: 59
Period size: 17 Copynumber: 3.9 Consensus size: 17
45223165 CTGACAGAAG
*
45223175 AAAATAAAAGAAAAATTA
1 AAAATAAAA-AAAAAATA
**
45223193 GAAAATTAAAATTAAAATA
1 -AAAA-TAAAAAAAAAATA
* *
45223212 AAAATAAAAACAAGATA
1 AAAATAAAAAAAAAATA
45223229 AAAATAAAAAATAAAA
1 AAAATAAAAAA-AAAA
45223245 AAATGGCTAA
Statistics
Matches: 41, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
17 20 0.49
18 7 0.17
19 9 0.22
20 5 0.12
ACGTcount: A:0.77, C:0.01, G:0.04, T:0.17
Consensus pattern (17 bp):
AAAATAAAAAAAAAATA
Found at i:45223221 original size:6 final size:6
Alignment explanation
Indices: 45223175--45223245 Score: 56
Period size: 6 Copynumber: 11.7 Consensus size: 6
45223165 CTGACAGAAG
* * * *
45223175 AAAATA AAAGA-A AAATTA GAAAATT AAAATT AAAATA AAAATA AAAA-C
1 AAAATA AAA-ATA AAAATA -AAAATA AAAATA AAAATA AAAATA AAAATA
*
45223223 AAGATA AAAATAA AAAATA AAAA
1 AAAATA AAAAT-A AAAATA AAAA
45223246 AATGGCTAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 10
0.74 0.11 0.14
Matches are distributed among these distances:
5 3 0.06
6 38 0.73
7 11 0.21
ACGTcount: A:0.77, C:0.01, G:0.04, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:45238449 original size:27 final size:27
Alignment explanation
Indices: 45238419--45238477 Score: 109
Period size: 27 Copynumber: 2.2 Consensus size: 27
45238409 GAGCAACACC
*
45238419 GTGATGATGGTCTGCAGGCTCTGTGGG
1 GTGACGATGGTCTGCAGGCTCTGTGGG
45238446 GTGACGATGGTCTGCAGGCTCTGTGGG
1 GTGACGATGGTCTGCAGGCTCTGTGGG
45238473 GTGAC
1 GTGAC
45238478 ACTGTGACAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.12, C:0.17, G:0.44, T:0.27
Consensus pattern (27 bp):
GTGACGATGGTCTGCAGGCTCTGTGGG
Found at i:45241671 original size:44 final size:44
Alignment explanation
Indices: 45241608--45241697 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
45241598 AAATTTTGAA
45241608 AATTTTATGGTAGAAAGGTATTTGAGTCTAGTTTCAAATACATC
1 AATTTTATGGTAGAAAGGTATTTGAGTCTAGTTTCAAATACATC
45241652 AATTTTATGGTAGAAAGGTATTTGAGTCTAGTTTCAAATACATC
1 AATTTTATGGTAGAAAGGTATTTGAGTCTAGTTTCAAATACATC
45241696 AA
1 AA
45241698 GTGGACTTTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.38
Consensus pattern (44 bp):
AATTTTATGGTAGAAAGGTATTTGAGTCTAGTTTCAAATACATC
Found at i:45248700 original size:29 final size:29
Alignment explanation
Indices: 45248646--45248701 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
45248636 AACTTTGTTA
*
45248646 AAAGCATTTGTGGTTGTTTCTATTAAATT
1 AAAGCATTTGTGGTTGTTTATATTAAATT
* *
45248675 AAAGCCTTTGTGGTTGTTTATGTTAAA
1 AAAGCATTTGTGGTTGTTTATATTAAA
45248702 AGGATGTCTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.27, C:0.07, G:0.20, T:0.46
Consensus pattern (29 bp):
AAAGCATTTGTGGTTGTTTATATTAAATT
Found at i:45265873 original size:12 final size:12
Alignment explanation
Indices: 45265856--45265880 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
45265846 AGTTACCATG
45265856 ATTCACTTTGAA
1 ATTCACTTTGAA
45265868 ATTCACTTTGAA
1 ATTCACTTTGAA
45265880 A
1 A
45265881 ATCTAGAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (12 bp):
ATTCACTTTGAA
Found at i:45266784 original size:21 final size:21
Alignment explanation
Indices: 45266760--45266811 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
45266750 CAAATAACAT
45266760 ATCATACTTAAAATAATACAG
1 ATCATACTTAAAATAATACAG
* **
45266781 ATCATAGTTACCATAATACAG
1 ATCATACTTAAAATAATACAG
45266802 ATCATACTTA
1 ATCATACTTA
45266812 GCTTATAACT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.46, C:0.17, G:0.06, T:0.31
Consensus pattern (21 bp):
ATCATACTTAAAATAATACAG
Found at i:45272093 original size:40 final size:40
Alignment explanation
Indices: 45272033--45272227 Score: 284
Period size: 40 Copynumber: 4.9 Consensus size: 40
45272023 GTTAATTTTA
* *
45272033 CCTGATTGTACATACGTGCCCCTATTTGAACTTCGGTACC
1 CCTGATTGCACATACGTGCCCCTGTTTGAACTTCGGTACC
* *
45272073 CCTGATTGCACATACATGCCCCTGTTTGAACTTCGGTACT
1 CCTGATTGCACATACGTGCCCCTGTTTGAACTTCGGTACC
* *
45272113 CCTGATTGCACATACGTGCCTCTGTTTGTACTTCGGTACC
1 CCTGATTGCACATACGTGCCCCTGTTTGAACTTCGGTACC
* * **
45272153 CCTGATTGCACATACGTGCCCCTGTTTGTATTTTAGTACC
1 CCTGATTGCACATACGTGCCCCTGTTTGAACTTCGGTACC
45272193 CCTGATTGCACATACGTGCCCCTGTTT-ATACTTCG
1 CCTGATTGCACATACGTGCCCCTGTTTGA-ACTTCG
45272228 ATAATTTCAA
Statistics
Matches: 138, Mismatches: 16, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
40 138 1.00
ACGTcount: A:0.18, C:0.30, G:0.18, T:0.34
Consensus pattern (40 bp):
CCTGATTGCACATACGTGCCCCTGTTTGAACTTCGGTACC
Found at i:45272094 original size:20 final size:20
Alignment explanation
Indices: 45272033--45272216 Score: 108
Period size: 20 Copynumber: 9.2 Consensus size: 20
45272023 GTTAATTTTA
*
45272033 CCTGATTGTACATACGTGCC
1 CCTGATTGCACATACGTGCC
* * *
45272053 CCT-ATTTGAAC-TTCGGTACC
1 CCTGA-TTGCACATAC-GTGCC
*
45272073 CCTGATTGCACATACATGCC
1 CCTGATTGCACATACGTGCC
* * * * *
45272093 CCTGTTTGAAC-TTCGGTACT
1 CCTGATTGCACATAC-GTGCC
45272113 CCTGATTGCACATACGTGCC
1 CCTGATTGCACATACGTGCC
* * * * *
45272133 TCTGTTTGTAC-TTCGGTACC
1 CCTGATTGCACATAC-GTGCC
45272153 CCTGATTGCACATACGTGCC
1 CCTGATTGCACATACGTGCC
* * ** *
45272173 CCTGTTTGTATTTTA-GTACC
1 CCTGATTGCA-CATACGTGCC
45272193 CCTGATTGCACATACGTGCC
1 CCTGATTGCACATACGTGCC
45272213 CCTG
1 CCTG
45272217 TTTATACTTC
Statistics
Matches: 116, Mismatches: 38, Indels: 20
0.67 0.22 0.11
Matches are distributed among these distances:
19 9 0.08
20 98 0.84
21 9 0.08
ACGTcount: A:0.18, C:0.30, G:0.18, T:0.33
Consensus pattern (20 bp):
CCTGATTGCACATACGTGCC
Found at i:45280599 original size:21 final size:21
Alignment explanation
Indices: 45280543--45280628 Score: 75
Period size: 21 Copynumber: 4.1 Consensus size: 21
45280533 TTTATATACC
* * *
45280543 TAATTCAGACCATACTTAGCA
1 TAATACAGATCATACTTAACA
* *
45280564 -AATAACATATTATACTTAACA
1 TAAT-ACAGATCATACTTAACA
**
45280585 TAATATGGATCATACTTAACA
1 TAATACAGATCATACTTAACA
* *
45280606 TAATACAGATCATTCTTAGCA
1 TAATACAGATCATACTTAACA
45280627 TA
1 TA
45280629 TAACTTATTA
Statistics
Matches: 50, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
20 3 0.06
21 44 0.88
22 3 0.06
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (21 bp):
TAATACAGATCATACTTAACA
Found at i:45285305 original size:27 final size:27
Alignment explanation
Indices: 45285269--45285322 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
45285259 TTATTATTGA
45285269 ATTAAAGATTAATTTTATAGTTTACTT
1 ATTAAAGATTAATTTTATAGTTTACTT
* *
45285296 ATTAATGATTAATTTTGTAGTTTACTT
1 ATTAAAGATTAATTTTATAGTTTACTT
45285323 TTATAACTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.33, C:0.04, G:0.09, T:0.54
Consensus pattern (27 bp):
ATTAAAGATTAATTTTATAGTTTACTT
Found at i:45289292 original size:22 final size:22
Alignment explanation
Indices: 45289248--45289316 Score: 68
Period size: 22 Copynumber: 3.1 Consensus size: 22
45289238 TATGCACTAT
* *
45289248 TAAACAGAGAGCATTAAA-GTGC
1 TAAACAGAGAGCA-CAAATATGC
*
45289270 TATACAGAGAGCACAAATATGC
1 TAAACAGAGAGCACAAATATGC
* * *
45289292 TAAACGGAGAGCACTAATGTGC
1 TAAACAGAGAGCACAAATATGC
45289314 TAA
1 TAA
45289317 TAATCAGAGA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
21 3 0.08
22 36 0.92
ACGTcount: A:0.43, C:0.16, G:0.22, T:0.19
Consensus pattern (22 bp):
TAAACAGAGAGCACAAATATGC
Found at i:45291313 original size:27 final size:27
Alignment explanation
Indices: 45291275--45291330 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
45291265 GCGACATTTC
*
45291275 TTGTCTTGTTTCCTTGATGCTACCAAA
1 TTGTCTTGTTTCATTGATGCTACCAAA
45291302 TTGTCTTGTTTCATTGATGCTACCAAA
1 TTGTCTTGTTTCATTGATGCTACCAAA
45291329 TT
1 TT
45291331 CAAGATTTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.46
Consensus pattern (27 bp):
TTGTCTTGTTTCATTGATGCTACCAAA
Found at i:45296223 original size:27 final size:26
Alignment explanation
Indices: 45296193--45296252 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 26
45296183 AGCCAATCAC
*
45296193 ATTGGCGACACCAAAGGTGCCAAAGTG
1 ATTGGCGA-ACCAAAGGTGCCAAAGAG
*
45296220 ATTGGCCTAACCAAAGGTGCCAAAGAG
1 ATTGG-CGAACCAAAGGTGCCAAAGAG
45296247 ATTGGC
1 ATTGGC
45296253 CTGACCGGAC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
26 1 0.03
27 27 0.90
28 2 0.07
ACGTcount: A:0.33, C:0.22, G:0.28, T:0.17
Consensus pattern (26 bp):
ATTGGCGAACCAAAGGTGCCAAAGAG
Found at i:45296253 original size:27 final size:27
Alignment explanation
Indices: 45296202--45296254 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
45296192 CATTGGCGAC
*
45296202 ACCAAAGGTGCCAAAGTGATTGGCCTA
1 ACCAAAGGTGCCAAAGAGATTGGCCTA
45296229 ACCAAAGGTGCCAAAGAGATTGGCCT
1 ACCAAAGGTGCCAAAGAGATTGGCCT
45296255 GACCGGACTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.34, C:0.23, G:0.26, T:0.17
Consensus pattern (27 bp):
ACCAAAGGTGCCAAAGAGATTGGCCTA
Found at i:45296952 original size:19 final size:19
Alignment explanation
Indices: 45296928--45296990 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
45296918 TCTAATTAAG
45296928 TAATAACTCTATTTTACTT
1 TAATAACTCTATTTTACTT
* * ** ***
45296947 TAATAAGTTTATTAAAAAG
1 TAATAACTCTATTTTACTT
45296966 TAATAACTCTATTTTACTT
1 TAATAACTCTATTTTACTT
45296985 TAATAA
1 TAATAA
45296991 ACTATTGCTT
Statistics
Matches: 30, Mismatches: 14, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.41, C:0.10, G:0.03, T:0.46
Consensus pattern (19 bp):
TAATAACTCTATTTTACTT
Found at i:45297054 original size:18 final size:17
Alignment explanation
Indices: 45297025--45297059 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
45297015 GTAATGTTTC
*
45297025 AAAAAATGTTTTTAGGA
1 AAAAAATGTTTTAAGGA
45297042 AAAAAATGTTTTTAAGGA
1 AAAAAATG-TTTTAAGGA
45297060 GAAGTAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.49, C:0.00, G:0.17, T:0.34
Consensus pattern (17 bp):
AAAAAATGTTTTAAGGA
Found at i:45297561 original size:28 final size:28
Alignment explanation
Indices: 45297521--45297578 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
45297511 TTATTTTTTT
**
45297521 ATTTTGATATATTTTGGTAAATAAAAAA
1 ATTTTGATATATTTTAATAAATAAAAAA
45297549 ATTTT-ATAATATTTTAATAAATAAAAAA
1 ATTTTGAT-ATATTTTAATAAATAAAAAA
45297577 AT
1 AT
45297579 AACATTTTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 2 0.07
28 25 0.93
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (28 bp):
ATTTTGATATATTTTAATAAATAAAAAA
Found at i:45298356 original size:40 final size:43
Alignment explanation
Indices: 45298312--45298393 Score: 116
Period size: 40 Copynumber: 2.0 Consensus size: 43
45298302 AGTAAAAAAA
45298312 AATTTATGATAATTATACA-TT-AAA-AATTATAATTTAATAG
1 AATTTATGATAATTATACATTTAAAATAATTATAATTTAATAG
* *
45298352 AATTTGTGATAATTATATATTTAAAAATAATTATAATTTAAT
1 AATTTATGATAATTATACATTT-AAAATAATTATAATTTAAT
45298394 TTATAATTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
40 17 0.47
41 2 0.06
43 3 0.08
44 14 0.39
ACGTcount: A:0.49, C:0.01, G:0.05, T:0.45
Consensus pattern (43 bp):
AATTTATGATAATTATACATTTAAAATAATTATAATTTAATAG
Found at i:45298383 original size:18 final size:18
Alignment explanation
Indices: 45298360--45298414 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
45298350 AGAATTTGTG
45298360 ATAATTATATATTTAAAA
1 ATAATTATATATTTAAAA
**
45298378 ATAATTATA-ATTTAATTT
1 ATAATTATATATTTAA-AA
*
45298396 ATAATTAT-TAGTTAAAA
1 ATAATTATATATTTAAAA
45298413 AT
1 AT
45298415 TGTGCTAATT
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
17 8 0.27
18 22 0.73
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
ATAATTATATATTTAAAA
Found at i:45298495 original size:6 final size:6
Alignment explanation
Indices: 45298484--45298511 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
45298474 AAAGGATATG
45298484 ATAATT ATAATT ATAATT ATAATT ATAA
1 ATAATT ATAATT ATAATT ATAATT ATAA
45298512 GTTAATTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (6 bp):
ATAATT
Found at i:45304191 original size:15 final size:16
Alignment explanation
Indices: 45304150--45304191 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
45304140 AAAAAATATA
45304150 TATTTTATTTTAAATT
1 TATTTTATTTTAAATT
* *
45304166 AATTTGATTTT-AATT
1 TATTTTATTTTAAATT
*
45304181 TATTTTCTTTT
1 TATTTTATTTT
45304192 CCCGAATCCC
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (16 bp):
TATTTTATTTTAAATT
Found at i:45308636 original size:79 final size:79
Alignment explanation
Indices: 45308505--45308663 Score: 318
Period size: 79 Copynumber: 2.0 Consensus size: 79
45308495 AAGGTAGTAC
45308505 TTCTGATTTTGGGCTAAACAGTGATGGGGTATTGTGTTTTCGAGGTTGAGTTTGTGTTCTTAACG
1 TTCTGATTTTGGGCTAAACAGTGATGGGGTATTGTGTTTTCGAGGTTGAGTTTGTGTTCTTAACG
45308570 ACTCTGATTTGAGG
66 ACTCTGATTTGAGG
45308584 TTCTGATTTTGGGCTAAACAGTGATGGGGTATTGTGTTTTCGAGGTTGAGTTTGTGTTCTTAACG
1 TTCTGATTTTGGGCTAAACAGTGATGGGGTATTGTGTTTTCGAGGTTGAGTTTGTGTTCTTAACG
45308649 ACTCTGATTTGAGG
66 ACTCTGATTTGAGG
45308663 T
1 T
45308664 AATTTTTTTT
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 80 1.00
ACGTcount: A:0.18, C:0.10, G:0.30, T:0.42
Consensus pattern (79 bp):
TTCTGATTTTGGGCTAAACAGTGATGGGGTATTGTGTTTTCGAGGTTGAGTTTGTGTTCTTAACG
ACTCTGATTTGAGG
Found at i:45312232 original size:31 final size:29
Alignment explanation
Indices: 45312189--45312277 Score: 97
Period size: 31 Copynumber: 3.0 Consensus size: 29
45312179 ATCCCAAAAT
45312189 TATACATAAACTTTGATTTAATATGCAATTA
1 TATACATAAACTTTGATTT--TATGCAATTA
* * *
45312220 TATACATGAACTTTGATTTTGTGCAATTT
1 TATACATAAACTTTGATTTTATGCAATTA
* * *
45312249 TATACATAAAAGTTTGATTTGATCCAATT
1 TATACAT-AAACTTTGATTTTATGCAATT
45312278 CTTATAAATT
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
29 15 0.31
30 16 0.33
31 18 0.37
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.44
Consensus pattern (29 bp):
TATACATAAACTTTGATTTTATGCAATTA
Found at i:45313511 original size:20 final size:20
Alignment explanation
Indices: 45313476--45313530 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
45313466 TAAATTGTTG
*
45313476 AATATC-ATTAAAATA-TATT
1 AATATCAATTCAAATATTA-T
45313495 AATATCAATTCAAATATTAT
1 AATATCAATTCAAATATTAT
*
45313515 AATAGACAATTCAAAT
1 AATA-TCAATTCAAAT
45313531 CATAATCTAC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 6 0.19
20 13 0.42
21 12 0.39
ACGTcount: A:0.53, C:0.09, G:0.02, T:0.36
Consensus pattern (20 bp):
AATATCAATTCAAATATTAT
Found at i:45315104 original size:30 final size:31
Alignment explanation
Indices: 45315068--45315127 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
45315058 AAACCTTTTA
*
45315068 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
* *
45315098 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
45315128 TTCCACCTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Done.