Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 150 of 207
Found at i:46055203 original size:40 final size:40
Alignment explanation
Indices: 46055138--46055214 Score: 95
Period size: 40 Copynumber: 1.9 Consensus size: 40
46055128 ACATCAACAC
* *
46055138 TTCAATATTTAATATGTAATGAATTATCAAAAATCAAAAT
1 TTCAATATTTAATATGCAATGAATTAACAAAAATCAAAAT
*
46055178 TTCAATAATTT-ATATGCAA-GAAATTAACACAAATCAA
1 TTCAAT-ATTTAATATGCAATG-AATTAACAAAAATCAA
46055215 TCTTACAACA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
39 1 0.03
40 27 0.84
41 4 0.12
ACGTcount: A:0.51, C:0.10, G:0.05, T:0.34
Consensus pattern (40 bp):
TTCAATATTTAATATGCAATGAATTAACAAAAATCAAAAT
Found at i:46055388 original size:86 final size:85
Alignment explanation
Indices: 46055290--46055477 Score: 252
Period size: 86 Copynumber: 2.2 Consensus size: 85
46055280 GGTATTAGGG
* * * * *
46055290 CTAAATCTTCAATTTCTATAACGATTTATATGCAACAAATTAACAAAAATCAATGGTTCAAGTTC
1 CTAAATTTTCAATTT-TATAACAACTTATATGCAACAAATTAACAAAAATAAATGGATCAAGTTC
* *
46055355 ATGTATTTACCAAAAATCAGA
65 ATGCATTTACCAAAAAGCAGA
* *
46055376 CT-GATTTGTCAATATTTATAACAACTTATATGCAACAAATTAGCAAAAATAAATGGATCAAGTT
1 CTAAATTT-TCAAT-TTTATAACAACTTATATGCAACAAATTAACAAAAATAAATGGATCAAGTT
*
46055440 CATGCATTTACCAACAAGCAGA
64 CATGCATTTACCAAAAAGCAGA
46055462 CTAAATTTTCAATTTT
1 CTAAATTTTCAATTTT
46055478 CAATTTTTAA
Statistics
Matches: 88, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
85 6 0.07
86 76 0.86
87 6 0.07
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.33
Consensus pattern (85 bp):
CTAAATTTTCAATTTTATAACAACTTATATGCAACAAATTAACAAAAATAAATGGATCAAGTTCA
TGCATTTACCAAAAAGCAGA
Found at i:46055740 original size:86 final size:87
Alignment explanation
Indices: 46055568--46055742 Score: 208
Period size: 86 Copynumber: 2.0 Consensus size: 87
46055558 TCATCATTTC
* * * * * * *
46055568 AACAATTTACATGCAAAAAATTAGCAAAAATTAACAGTTCATGTATAATGTATTTACCAAAAACC
1 AACAATTTAAATGCAAAAAATTAACAAAAATTAACAATACAAGTATAATATATTCACCAAAAACC
* *
46055633 GGACCAACTTGTCAATTTTTAT
66 AGACCAAATTGTCAATTTTTAT
* * * *
46055655 AACATTTTAAATGCAACAAATTAACACAAATTAACAATACAAGT-TCATATATTCACCAAAAACC
1 AACAATTTAAATGCAAAAAATTAACAAAAATTAACAATACAAGTATAATATATTCACCAAAAACC
* *
46055719 AGACTAAATTTTCAATTTTTAT
66 AGACCAAATTGTCAATTTTTAT
46055741 AA
1 AA
46055743 AATAAGAGGA
Statistics
Matches: 73, Mismatches: 15, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
86 37 0.51
87 36 0.49
ACGTcount: A:0.46, C:0.17, G:0.06, T:0.31
Consensus pattern (87 bp):
AACAATTTAAATGCAAAAAATTAACAAAAATTAACAATACAAGTATAATATATTCACCAAAAACC
AGACCAAATTGTCAATTTTTAT
Found at i:46058749 original size:20 final size:19
Alignment explanation
Indices: 46058713--46058764 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 19
46058703 TTTTAAATAA
46058713 ATAAT-TTTTGAAAAATTA-
1 ATAATATTTT-AAAAATTAG
46058731 AGTAATATTTTAAAGAATTAG
1 A-TAATATTTTAAA-AATTAG
46058752 ATAA-ATTTTAAAA
1 ATAATATTTTAAAA
46058765 TTTTTATATA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
18 2 0.07
19 15 0.50
20 12 0.40
21 1 0.03
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (19 bp):
ATAATATTTTAAAAATTAG
Found at i:46059067 original size:10 final size:10
Alignment explanation
Indices: 46059019--46059079 Score: 59
Period size: 10 Copynumber: 5.8 Consensus size: 10
46059009 AAAATAAAAG
46059019 TTTAAAATCTT
1 TTTAAAATC-T
* *
46059030 TTTTAAATTT
1 TTTAAAATCT
**
46059040 TTTAAAAAAT
1 TTTAAAATCT
46059050 TTTAAAATCT
1 TTTAAAATCT
46059060 TTTAAAATTCAT
1 TTTAAAA-TC-T
46059072 TTTAAAAT
1 TTTAAAAT
46059080 TTTAAATCAC
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
10 23 0.56
11 10 0.24
12 8 0.20
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (10 bp):
TTTAAAATCT
Found at i:46059076 original size:12 final size:12
Alignment explanation
Indices: 46059048--46059080 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
46059038 TTTTTAAAAA
46059048 ATTTTAAAA-TC
1 ATTTTAAAATTC
46059059 -TTTTAAAATTC
1 ATTTTAAAATTC
46059070 ATTTTAAAATT
1 ATTTTAAAATT
46059081 TTAAATCACG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 8 0.40
11 2 0.10
12 10 0.50
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (12 bp):
ATTTTAAAATTC
Found at i:46059079 original size:30 final size:29
Alignment explanation
Indices: 46059013--46059085 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 29
46059003 ATTATAAAAA
* *
46059013 TAAAAGTTTAAAATCTTTTTTAAATTTTT
1 TAAAATTTTAAAATCTTTTTAAAATTTTT
46059042 TAAAAAATTTTAAAATC-TTTTAAAATTCATTT
1 T--AAAATTTTAAAATCTTTTTAAAATT--TTT
46059074 TAAAATTTTAAA
1 TAAAATTTTAAA
46059086 TCACGTAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
29 1 0.03
30 20 0.53
31 13 0.34
32 4 0.11
ACGTcount: A:0.45, C:0.04, G:0.01, T:0.49
Consensus pattern (29 bp):
TAAAATTTTAAAATCTTTTTAAAATTTTT
Found at i:46059883 original size:21 final size:21
Alignment explanation
Indices: 46059833--46059892 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 21
46059823 CTAACTCGAC
46059833 CCCAAATCTCTAAACCCTAAAT
1 CCCAAA-CTCTAAACCCTAAAT
***
46059855 CTTTAACTCTAAACCTCT-AAT
1 CCCAAACTCTAAACC-CTAAAT
46059876 CCCAAACTC--AACCCTAA
1 CCCAAACTCTAAACCCTAA
46059893 TTACCCCAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
18 2 0.07
19 5 0.17
21 18 0.60
22 5 0.17
ACGTcount: A:0.38, C:0.37, G:0.00, T:0.25
Consensus pattern (21 bp):
CCCAAACTCTAAACCCTAAAT
Found at i:46060006 original size:7 final size:7
Alignment explanation
Indices: 46059994--46060088 Score: 59
Period size: 7 Copynumber: 13.3 Consensus size: 7
46059984 GGCCCTTAAC
46059994 CCCTAAA
1 CCCTAAA
46060001 CCCTAAA
1 CCCTAAA
*
46060008 TCCTAAA
1 CCCTAAA
* *
46060015 CCATTAA
1 CCCTAAA
46060022 CCCTAAA
1 CCCTAAA
*
46060029 CCTTAAAA
1 CCCT-AAA
46060037 CCCTAAA
1 CCCTAAA
*
46060044 CTC-ATAA
1 CCCTA-AA
**
46060051 CCCTCAGC
1 CCCT-AAA
46060059 CCCT-AA
1 CCCTAAA
*
46060065 CCTCTAAC
1 CC-CTAAA
*
46060073 CCCTAAC
1 CCCTAAA
46060080 CCCTAAA
1 CCCTAAA
46060087 CC
1 CC
46060089 TTATTTAATA
Statistics
Matches: 66, Mismatches: 16, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
6 3 0.05
7 49 0.74
8 13 0.20
9 1 0.02
ACGTcount: A:0.37, C:0.43, G:0.01, T:0.19
Consensus pattern (7 bp):
CCCTAAA
Found at i:46060022 original size:29 final size:31
Alignment explanation
Indices: 46059989--46060053 Score: 84
Period size: 29 Copynumber: 2.2 Consensus size: 31
46059979 AACCTGGCCC
*
46059989 TTAACCCCTAAACCCT-AAATCCTAAAC-CA
1 TTAACCCCTAAACCCTAAAACCCTAAACTCA
*
46060018 TTAA-CCCTAAACCTTAAAACCCTAAACTCA
1 TTAACCCCTAAACCCTAAAACCCTAAACTCA
46060048 -TAACCC
1 TTAACCC
46060054 TCAGCCCCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 10 0.32
29 17 0.55
30 4 0.13
ACGTcount: A:0.42, C:0.37, G:0.00, T:0.22
Consensus pattern (31 bp):
TTAACCCCTAAACCCTAAAACCCTAAACTCA
Found at i:46060733 original size:41 final size:41
Alignment explanation
Indices: 46060688--46060962 Score: 245
Period size: 41 Copynumber: 6.7 Consensus size: 41
46060678 ATTTGTTTTT
*
46060688 GCGGCGCTT-TACAAAAAACGCCACTAAAGGTCTGCGCATTA
1 GCGGCGCTTCT-CAAAAAACGCCGCTAAAGGTCTGCGCATTA
* * *
46060729 GCGGCGCTTCAT-AAAAAACGCCGCTACAGGTTTGCACATTA
1 GCGGCGCTTC-TCAAAAAACGCCGCTAAAGGTCTGCGCATTA
* * * * * * * *
46060770 GCAGCGATTC-CTTACAAGCGCTGCTAAAGGTCAGTGCATTA
1 GCGGCGCTTCTC-AAAAAACGCCGCTAAAGGTCTGCGCATTA
* *
46060811 GTGGCGCTTCCTC-AAAAACACCGCTAAAGGTCTGCGCATTA
1 GCGGCGCTT-CTCAAAAAACGCCGCTAAAGGTCTGCGCATTA
* * * *
46060852 GCGACGCTTCTTAAAAAACGCCGCTAAAGGTTTGCGTATTA
1 GCGGCGCTTCTCAAAAAACGCCGCTAAAGGTCTGCGCATTA
**
46060893 GCGGCGCTTCT-AGAAAAACGCCGCTAAAGGTCCACGCATTA
1 GCGGCGCTTCTCA-AAAAACGCCGCTAAAGGTCTGCGCATTA
* * ** *
46060934 GCGACACTTCTTGAAAAACGCCACTAAAG
1 GCGGCGCTTCTCAAAAAACGCCGCTAAAG
46060963 ACCCACAAGG
Statistics
Matches: 186, Mismatches: 39, Indels: 18
0.77 0.16 0.07
Matches are distributed among these distances:
40 3 0.02
41 180 0.97
42 1 0.01
43 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (41 bp):
GCGGCGCTTCTCAAAAAACGCCGCTAAAGGTCTGCGCATTA
Found at i:46060809 original size:82 final size:81
Alignment explanation
Indices: 46060700--46060962 Score: 271
Period size: 82 Copynumber: 3.2 Consensus size: 81
46060690 GGCGCTTTAC
* * *
46060700 AAAAAACGCCACTAAAGGTCTGCGCATTAGCGGCGCTTCATAAAAAACGCCGCTACAGGTTTGCA
1 AAAAAACGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTC-TAAAAAACGCCGCTAAAGGTCTGCA
46060765 CATTAGC-AGCGATTCCTT
65 CATTAGCGA-CGATT-CTT
* * * * * * * * *
46060783 -ACAAGCGCTGCTAAAGGTCAGTGCATTAGTGGCGCTTCCTCAAAAACACCGCTAAAGGTCTGCG
1 AAAAAACGCCGCTAAAGGTCTGCGCATTAGCGGCGCTT-CTAAAAAACGCCGCTAAAGGTCTGCA
*
46060847 CATTAGCGACGCTTCTT
65 CATTAGCGACGATTCTT
* * ** *
46060864 AAAAAACGCCGCTAAAGGTTTGCGTATTAGCGGCGCTTCTAGAAAAACGCCGCTAAAGGTCCACG
1 AAAAAACGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTCTA-AAAAACGCCGCTAAAGGTCTGCA
46060929 CATTAGCGAC-ACTTCTT
65 CATTAGCGACGA-TTCTT
* *
46060946 GAAAAACGCCACTAAAG
1 AAAAAACGCCGCTAAAG
46060963 ACCCACAAGG
Statistics
Matches: 147, Mismatches: 28, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
81 5 0.03
82 140 0.95
83 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.21
Consensus pattern (81 bp):
AAAAAACGCCGCTAAAGGTCTGCGCATTAGCGGCGCTTCTAAAAAACGCCGCTAAAGGTCTGCAC
ATTAGCGACGATTCTT
Found at i:46060919 original size:123 final size:123
Alignment explanation
Indices: 46060701--46060924 Score: 315
Period size: 123 Copynumber: 1.8 Consensus size: 123
46060691 GCGCTTTACA
* * *
46060701 AAAAACGCCACTAAAGGTCTGCGCATTAGCGGCGCTTCATAAAAAACGCCGCTACAGGTTTGCAC
1 AAAAACACCACTAAAGGTCTGCGCATTAGCGACGCTTCATAAAAAACGCCGCTAAAGGTTTGCAC
* * * *
46060766 ATTAGCAGCGATTCCTTACAAGCGCTGCTAAAGGTCAGTGCATTAGTGGCGCTTCCTC
66 ATTAGCAGCGATTCCTGAAAAACGCCGCTAAAGGTCAGTGCATTAGTGGCGCTTCCTC
* * **
46060824 AAAAACACCGCTAAAGGTCTGCGCATTAGCGACGCTTCTTAAAAAACGCCGCTAAAGGTTTGCGT
1 AAAAACACCACTAAAGGTCTGCGCATTAGCGACGCTTCATAAAAAACGCCGCTAAAGGTTTGCAC
* *
46060889 ATTAGCGGCGCTT-CTAGAAAAACGCCGCTAAAGGTC
66 ATTAGCAGCGATTCCT-GAAAAACGCCGCTAAAGGTC
46060925 CACGCATTAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
122 2 0.02
123 85 0.98
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (123 bp):
AAAAACACCACTAAAGGTCTGCGCATTAGCGACGCTTCATAAAAAACGCCGCTAAAGGTTTGCAC
ATTAGCAGCGATTCCTGAAAAACGCCGCTAAAGGTCAGTGCATTAGTGGCGCTTCCTC
Found at i:46060932 original size:123 final size:123
Alignment explanation
Indices: 46060701--46060962 Score: 312
Period size: 123 Copynumber: 2.1 Consensus size: 123
46060691 GCGCTTTACA
* * *
46060701 AAAAACGCCACTAAAGGTCTGCGCATTAGCGGCGCTTCATAAAAAACGCCGCTACAGGTTTGCAC
1 AAAAACACCACTAAAGGTCTGCGCATTAGCGACGCTTCATAAAAAACGCCGCTAAAGGTTTGCAC
* * * * *
46060766 ATTAGCAGCGATTCCTTACAAGCGCTGCTAAAGGTCAGTGCATTAGTGGCGCTTCCTC
66 ATTAGCAGCGATTCCTGAAAAACGCCGCTAAAGGTCAGCGCATTAGTGGCGCTTCCTC
* * **
46060824 AAAAACACCGCTAAAGGTCTGCGCATTAGCGACGCTTCTTAAAAAACGCCGCTAAAGGTTTGCGT
1 AAAAACACCACTAAAGGTCTGCGCATTAGCGACGCTTCATAAAAAACGCCGCTAAAGGTTTGCAC
* * * * * * *
46060889 ATTAGCGGCGCTT-CTAGAAAAACGCCGCTAAAGGTCCA-CGCATTAGCGACACTTCTTG
66 ATTAGCAGCGATTCCT-GAAAAACGCCGCTAAAGGT-CAGCGCATTAGTGGCGCTTCCTC
*
46060947 AAAAACGCCACTAAAG
1 AAAAACACCACTAAAG
46060963 ACCCACAAGG
Statistics
Matches: 116, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
122 2 0.02
123 112 0.97
124 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.21
Consensus pattern (123 bp):
AAAAACACCACTAAAGGTCTGCGCATTAGCGACGCTTCATAAAAAACGCCGCTAAAGGTTTGCAC
ATTAGCAGCGATTCCTGAAAAACGCCGCTAAAGGTCAGCGCATTAGTGGCGCTTCCTC
Found at i:46061315 original size:18 final size:18
Alignment explanation
Indices: 46061292--46061329 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
46061282 TGAAAACTAT
* *
46061292 TTTACTTTGAAAATTAAA
1 TTTACTTAGAAAATAAAA
46061310 TTTACTTAGAAAATAAAA
1 TTTACTTAGAAAATAAAA
46061328 TT
1 TT
46061330 GTTATATTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.42
Consensus pattern (18 bp):
TTTACTTAGAAAATAAAA
Found at i:46063448 original size:11 final size:11
Alignment explanation
Indices: 46063432--46063457 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
46063422 AATATTTTAA
46063432 TTTTAAAATAC
1 TTTTAAAATAC
46063443 TTTTAAAATAC
1 TTTTAAAATAC
46063454 TTTT
1 TTTT
46063458 TTTTTAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (11 bp):
TTTTAAAATAC
Found at i:46063477 original size:16 final size:16
Alignment explanation
Indices: 46063458--46063489 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
46063448 AAATACTTTT
*
46063458 TTTTTAATTTTTTTAA
1 TTTTAAATTTTTTTAA
46063474 TTTTAAATTTTTTTAA
1 TTTTAAATTTTTTTAA
46063490 AATATTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTTAAATTTTTTTAA
Found at i:46063499 original size:41 final size:41
Alignment explanation
Indices: 46063426--46063549 Score: 189
Period size: 40 Copynumber: 3.0 Consensus size: 41
46063416 ATAATAAATA
*
46063426 TTTTAATTTTAAAATACTTTTAAAATACTTTTTTTTTAATTT
1 TTTTAATTTTAAAATATTTTTAAAATA-TTTTTTTTTAATTT
* **
46063468 TTTTAATTTT-AAATTTTTTTAAAATATTTTTTTAAAATTT
1 TTTTAATTTTAAAATATTTTTAAAATATTTTTTTTTAATTT
46063508 TTTTAATTTTAAAATATTTTTAAAATA-TTTTTTTTAATTT
1 TTTTAATTTTAAAATATTTTTAAAATATTTTTTTTTAATTT
46063548 TT
1 TT
46063550 ATTTTTATTT
Statistics
Matches: 74, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
40 35 0.47
41 29 0.39
42 10 0.14
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.65
Consensus pattern (41 bp):
TTTTAATTTTAAAATATTTTTAAAATATTTTTTTTTAATTT
Found at i:46063518 original size:30 final size:31
Alignment explanation
Indices: 46063484--46063548 Score: 98
Period size: 31 Copynumber: 2.1 Consensus size: 31
46063474 TTTTAAATTT
*
46063484 TTTTAAAATATTTTTTTAAA-A-TTTTTTTAA
1 TTTTAAAATA-TTTTTAAAATATTTTTTTTAA
46063514 TTTTAAAATATTTTTAAAATATTTTTTTTAA
1 TTTTAAAATATTTTTAAAATATTTTTTTTAA
46063545 TTTT
1 TTTT
46063549 TATTTTTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
29 8 0.25
30 11 0.34
31 13 0.41
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (31 bp):
TTTTAAAATATTTTTAAAATATTTTTTTTAA
Found at i:46063519 original size:17 final size:17
Alignment explanation
Indices: 46063497--46063530 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
46063487 TAAAATATTT
*
46063497 TTTTAAAATTTTTTTAA
1 TTTTAAAATATTTTTAA
46063514 TTTTAAAATATTTTTAA
1 TTTTAAAATATTTTTAA
46063531 AATATTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTTAAAATATTTTTAA
Found at i:46063528 original size:11 final size:11
Alignment explanation
Indices: 46063474--46063539 Score: 54
Period size: 11 Copynumber: 6.4 Consensus size: 11
46063464 ATTTTTTTAA
*
46063474 TTTT-AAATTT
1 TTTTAAAATAT
46063484 TTTTAAAATATTT
1 TTTTAAAATA--T
46063497 TTTTAAAAT-T
1 TTTTAAAATAT
*
46063507 TTTT----TAA
1 TTTTAAAATAT
46063514 TTTTAAAATAT
1 TTTTAAAATAT
46063525 TTTTAAAATAT
1 TTTTAAAATAT
46063536 TTTT
1 TTTT
46063540 TTTAATTTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 15
0.71 0.05 0.24
Matches are distributed among these distances:
6 1 0.02
7 4 0.09
10 9 0.20
11 21 0.47
13 10 0.22
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:46063591 original size:26 final size:25
Alignment explanation
Indices: 46063543--46063591 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
46063533 TATTTTTTTT
* **
46063543 AATTTTTATTTTTATTTTTAAAATA
1 AATTTTTATATTTATTTAAAAAATA
46063568 AATTTTTGATATTTATTTAAAAAA
1 AATTTTT-ATATTTATTTAAAAAA
46063592 ACGGGCCGGG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 7 0.35
26 13 0.65
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (25 bp):
AATTTTTATATTTATTTAAAAAATA
Found at i:46069273 original size:21 final size:21
Alignment explanation
Indices: 46069249--46069288 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
46069239 CTTGAACTTA
*
46069249 AAACCTCGAACCTTGAACCAT
1 AAACCTCGAACCCTGAACCAT
* *
46069270 AAACTTTGAACCCTGAACC
1 AAACCTCGAACCCTGAACC
46069289 CTGAGGTTCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.33, G:0.10, T:0.20
Consensus pattern (21 bp):
AAACCTCGAACCCTGAACCAT
Found at i:46069360 original size:21 final size:21
Alignment explanation
Indices: 46069298--46069362 Score: 73
Period size: 21 Copynumber: 3.1 Consensus size: 21
46069288 CCTGAGGTTC
*
46069298 AAGGTTTG-GGTTTAGAATTT
1 AAGGTTTGAGGTTTAGGATTT
*
46069318 AAGGTTTTGA-GTTCGAGG-TTT
1 AAGG-TTTGAGGTT-TAGGATTT
46069339 AAGGTTTGAGGTTTAGGATTT
1 AAGGTTTGAGGTTTAGGATTT
46069360 AAG
1 AAG
46069363 AATTTGGGGA
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
20 12 0.32
21 23 0.62
22 2 0.05
ACGTcount: A:0.25, C:0.02, G:0.32, T:0.42
Consensus pattern (21 bp):
AAGGTTTGAGGTTTAGGATTT
Found at i:46074053 original size:17 final size:17
Alignment explanation
Indices: 46074027--46074067 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
46074017 ATTAGAATGT
*
46074027 AAAAATTAAACTAAAAAC
1 AAAAATAAAAC-AAAAAC
*
46074045 AAAAATAAAACAAAAAT
1 AAAAATAAAACAAAAAC
46074062 AAAAAT
1 AAAAAT
46074068 GGCTAAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (17 bp):
AAAAATAAAACAAAAAC
Found at i:46074054 original size:11 final size:11
Alignment explanation
Indices: 46074040--46074065 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
46074030 AATTAAACTA
46074040 AAAACAAAAAT
1 AAAACAAAAAT
46074051 AAAACAAAAAT
1 AAAACAAAAAT
46074062 AAAA
1 AAAA
46074066 ATGGCTAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.08, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAACAAAAAT
Found at i:46077595 original size:150 final size:153
Alignment explanation
Indices: 46077416--46077782 Score: 460
Period size: 150 Copynumber: 2.4 Consensus size: 153
46077406 ACTTTCCTTT
* * * * * *
46077416 AAACAAATTTTTATTTTTCAAAATGTAAACTTTT-TTATTTTATTAAAAAAACACTGTTTTTCTT
1 AAACAGATTTTTATTATTCAAAATCTAAACTTTTCTT-TTTT-TAAAAAAAAAACTATTTTTCTT
* * *
46077480 AAAGATTAAAACTTTTATTTTGAAGTAGTT-AAAAAAAATCAAAAC--TGTTTTTTAGAAATTTA
64 AAAGATTAAAACTTTTACTTTGAAATAGTTGAAAAAAAATCAAAACGTTG-TTTTTAAAAATTTA
46077542 AAATTTCCTTTAAAAT-A-ACTAAAA
128 AAATTTCCTTTAAAATAATACTAAAA
* *
46077566 AAATAGATTTTTATTATTCAAAATCTAAACTTTATCTTTTTTTAAAAAAAAAATTATTTTTCTTA
1 AAACAGATTTTTATTATTCAAAATCTAAACTTT-TCTTTTTTTAAAAAAAAAACTATTTTTCTTA
*
46077631 AAGATTAAAGCTTTTACTTTGAAATAGTTGAAAAAAAATCAAAACGTTGTTTTTAAAAATTTAAA
65 AAGATTAAAACTTTTACTTTGAAATAGTTGAAAAAAAATCAAAACGTTGTTTTTAAAAATTTAAA
*
46077696 ATTTCCTTTAAAATAAATATTAAAA
130 ATTTCCTTTAAAAT-AATACTAAAA
* * *
46077721 AAACATATTTTTATTTCTTCAAAATCTAAA-TTTTCTCCTTTTTGTAAAAAAAACACTATTTT
1 AAACAGATTTTTA-TTATTCAAAATCTAAACTTTTCT--TTTTT-TAAAAAAAAAACTATTTT
46077783 CCCAAAATCA
Statistics
Matches: 187, Mismatches: 18, Indels: 17
0.84 0.08 0.08
Matches are distributed among these distances:
150 74 0.40
151 20 0.11
152 31 0.17
153 2 0.01
154 4 0.02
155 20 0.11
156 20 0.11
157 16 0.09
ACGTcount: A:0.44, C:0.09, G:0.05, T:0.43
Consensus pattern (153 bp):
AAACAGATTTTTATTATTCAAAATCTAAACTTTTCTTTTTTTAAAAAAAAAACTATTTTTCTTAA
AGATTAAAACTTTTACTTTGAAATAGTTGAAAAAAAATCAAAACGTTGTTTTTAAAAATTTAAAA
TTTCCTTTAAAATAATACTAAAA
Found at i:46078577 original size:39 final size:39
Alignment explanation
Indices: 46078518--46078596 Score: 122
Period size: 39 Copynumber: 2.0 Consensus size: 39
46078508 TGAAAAGTAG
* *
46078518 ACTAGAAAAGTAAACGGACCTCTACACCTAGGCCTCTAA
1 ACTAGAAAAGTAAACAGACCTCCACACCTAGGCCTCTAA
* *
46078557 ACTAGAAAAGTAAACAGACCTCCACACCTGGGTCTCTAA
1 ACTAGAAAAGTAAACAGACCTCCACACCTAGGCCTCTAA
46078596 A
1 A
46078597 TGCAATCAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.39, C:0.28, G:0.15, T:0.18
Consensus pattern (39 bp):
ACTAGAAAAGTAAACAGACCTCCACACCTAGGCCTCTAA
Found at i:46078621 original size:42 final size:42
Alignment explanation
Indices: 46078522--46078897 Score: 492
Period size: 42 Copynumber: 9.1 Consensus size: 42
46078512 AAGTAGACTA
* * * * * *
46078522 GAAAAGTAAACGGACCTCTACACCTAGGCCTCTAAA--CTA-
1 GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAAT
* **
46078561 GAAAAGTAAACAGACCTCCACACCTGGGTCTCTAAATGCAAT
1 GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAAT
* *
46078603 CAAAAGTGAATGGACCTCCACACCTTGGTCTCTAAATGCAAT
1 GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAAT
*
46078645 GAAAAGTGAATGAACCTCCACACCTGGGTCTCTAAATGCAAT
1 GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAAT
* *
46078687 GAAAAGTGAAT-AACCTCCACACCTGGGTCTCTAGATGCAAT
1 GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAAT
* * *
46078728 GAAAAGTGAATGGACCTTCACACCTGGGTCTTTAAATGTAAT
1 GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAAT
*
46078770 GAAAAGTGAATGGACCTCCACACCTGGGTCTCTATATGCAAT
1 GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAAT
* * * *
46078812 GAAAAGTGAATCGACCTCCGCACCTAGGTCTTTAAATGCAAT
1 GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAAT
* * *
46078854 GAAAAGTGAAT-AACCTCTACACCTGGGTCTCTAGATGCAAT
1 GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAAT
46078895 GAA
1 GAA
46078898 CGTTTTCCTT
Statistics
Matches: 299, Mismatches: 34, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
39 32 0.11
41 69 0.23
42 198 0.66
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.23
Consensus pattern (42 bp):
GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAAT
Found at i:46078742 original size:125 final size:126
Alignment explanation
Indices: 46078561--46078897 Score: 500
Period size: 125 Copynumber: 2.7 Consensus size: 126
46078551 CTCTAAACTA
* *
46078561 GAAAAGT-AAACAGACCTCCACACCTGGGTCTCTAAATGCAATCAAAAGTGAATGGACCTCCACA
1 GAAAAGTGAATCA-ACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGGACCTCCACA
*
46078625 CCTTGGTCTCTAAATGCAATGAAAAGTGAATGAACCTCCACACCTGGGTCTCTAAATGCAAT
65 CCTGGGTCTCTAAATGCAATGAAAAGTGAATGAACCTCCACACCTGGGTCTCTAAATGCAAT
* *
46078687 GAAAAGTGAAT-AACCTCCACACCTGGGTCTCTAGATGCAATGAAAAGTGAATGGACCTTCACAC
1 GAAAAGTGAATCAACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGGACCTCCACAC
* * * *
46078751 CTGGGTCTTTAAATGTAATGAAAAGTGAATGGACCTCCACACCTGGGTCTCTATATGCAAT
66 CTGGGTCTCTAAATGCAATGAAAAGTGAATGAACCTCCACACCTGGGTCTCTAAATGCAAT
* * * * * *
46078812 GAAAAGTGAATCGACCTCCGCACCTAGGTCTTTAAATGCAATGAAAAGTGAAT-AACCTCTACAC
1 GAAAAGTGAATCAACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGGACCTCCACAC
*
46078876 CTGGGTCTCTAGATGCAATGAA
66 CTGGGTCTCTAAATGCAATGAA
46078898 CGTTTTCCTT
Statistics
Matches: 189, Mismatches: 20, Indels: 5
0.88 0.09 0.02
Matches are distributed among these distances:
125 143 0.76
126 44 0.23
127 2 0.01
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.23
Consensus pattern (126 bp):
GAAAAGTGAATCAACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGGACCTCCACAC
CTGGGTCTCTAAATGCAATGAAAAGTGAATGAACCTCCACACCTGGGTCTCTAAATGCAAT
Found at i:46078850 original size:167 final size:167
Alignment explanation
Indices: 46078573--46078897 Score: 544
Period size: 167 Copynumber: 1.9 Consensus size: 167
46078563 AAAGTAAACA
*
46078573 GACCTCCACACCTGGGTCTCTAAATGCAATCAAAAGTGAATGGACCTCCACACCTTGGTCTCTAA
1 GACCTCCACACCTGGGTCTCTAAATGCAATCAAAAGTGAATGGACCTCCACACCTGGGTCTCTAA
*
46078638 ATGCAATGAAAAGTGAATGAACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATAACCT
66 ATGCAATGAAAAGTGAATGAACCTCCACACCTAGGTCTCTAAATGCAATGAAAAGTGAATAACCT
46078703 CCACACCTGGGTCTCTAGATGCAATGAAAAGTGAATG
131 CCACACCTGGGTCTCTAGATGCAATGAAAAGTGAATG
* * * * *
46078740 GACCTTCACACCTGGGTCTTTAAATGTAATGAAAAGTGAATGGACCTCCACACCTGGGTCTCTAT
1 GACCTCCACACCTGGGTCTCTAAATGCAATCAAAAGTGAATGGACCTCCACACCTGGGTCTCTAA
* *
46078805 ATGCAATGAAAAGTGAATCG-ACCTCCGCACCTAGGTCTTTAAATGCAATGAAAAGTGAATAACC
66 ATGCAATGAAAAGTGAAT-GAACCTCCACACCTAGGTCTCTAAATGCAATGAAAAGTGAATAACC
*
46078869 TCTACACCTGGGTCTCTAGATGCAATGAA
130 TCCACACCTGGGTCTCTAGATGCAATGAA
46078898 CGTTTTCCTT
Statistics
Matches: 147, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
167 146 0.99
168 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (167 bp):
GACCTCCACACCTGGGTCTCTAAATGCAATCAAAAGTGAATGGACCTCCACACCTGGGTCTCTAA
ATGCAATGAAAAGTGAATGAACCTCCACACCTAGGTCTCTAAATGCAATGAAAAGTGAATAACCT
CCACACCTGGGTCTCTAGATGCAATGAAAAGTGAATG
Found at i:46079323 original size:8 final size:8
Alignment explanation
Indices: 46079312--46079344 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
46079302 ATTTTTTTGG
46079312 TTTCTTTT
1 TTTCTTTT
46079320 TTTCTTTT
1 TTTCTTTT
*
46079328 TCT-TTTT
1 TTTCTTTT
46079335 TTTCTTTT
1 TTTCTTTT
46079343 TT
1 TT
46079345 CTTGATTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
7 6 0.27
8 16 0.73
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTCTTTT
Found at i:46079342 original size:14 final size:14
Alignment explanation
Indices: 46079312--46079343 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
46079302 ATTTTTTTGG
46079312 TTTCTTTTTTTCTT
1 TTTCTTTTTTTCTT
46079326 TTTCTTTTTTTTCTT
1 TTTC-TTTTTTTCTT
46079341 TTT
1 TTT
46079344 TCTTGATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (14 bp):
TTTCTTTTTTTCTT
Found at i:46081927 original size:51 final size:51
Alignment explanation
Indices: 46081849--46081987 Score: 147
Period size: 51 Copynumber: 2.7 Consensus size: 51
46081839 TGCCTATAAA
* *
46081849 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-GATA-GATAATGGT
1 CACATGTGTAGTACTATGTGCAAGCTACTACGTGTATCGGA-AGGAT-ATGGT
* * * * * *
46081900 CACATGTGTAGTAATATGTGCATGCTACTATGTGTACCGGAAGGCTTTGGT
1 CACATGTGTAGTACTATGTGCAAGCTACTACGTGTATCGGAAGGATATGGT
* * *
46081951 CGCGTGTGTAGTACTATGTGAAAGCTACTACGTGTAT
1 CACATGTGTAGTACTATGTGCAAGCTACTACGTGTAT
46081988 TGAATGATAA
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
51 68 0.94
52 4 0.06
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.32
Consensus pattern (51 bp):
CACATGTGTAGTACTATGTGCAAGCTACTACGTGTATCGGAAGGATATGGT
Found at i:46097564 original size:20 final size:20
Alignment explanation
Indices: 46097536--46097585 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
46097526 GGGGAATGTG
* *
46097536 TAAAAAAAAAGACATGAA-AA
1 TAAATAAAAAGAAAT-AAGAA
*
46097556 TAAATAAAACGAAATAAGAA
1 TAAATAAAAAGAAATAAGAA
46097576 TAAATAAAAA
1 TAAATAAAAA
46097586 TGATACAAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 2 0.08
20 23 0.92
ACGTcount: A:0.74, C:0.04, G:0.08, T:0.14
Consensus pattern (20 bp):
TAAATAAAAAGAAATAAGAA
Found at i:46098404 original size:51 final size:52
Alignment explanation
Indices: 46098349--46098572 Score: 157
Period size: 51 Copynumber: 4.4 Consensus size: 52
46098339 GAAGTTGTTA
*
46098349 AAAAAAATCAAAACTTTATTTTAAAAATTTAAAC-TTTCCTTTAAAATAACT
1 AAAAAAATCAAAATTTTATTTTAAAAATTTAAACTTTTCCTTTAAAATAACT
* * * * *
46098400 AAAAAAAACAAATTTTTATTTTTCAAAATCTAAACTTTCTCCTTT----T--TT
1 AAAAAAATCAAAATTTTA-TTTTAAAAATTTAAACTTT-TCCTTTAAAATAACT
** * * * **
46098448 AAAAAAA-CACTATTTT-TCTTAAAGA-TTAAAGCTTTTACTTTAAAATAGTTGAAA
1 AAAAAAATCAAAATTTTATTTTAAAAATTTAAA-CTTTTCCTTTAAAATA----ACT
*
46098502 AAAAAAATCAAAATTTTGTTTTAAAAATTTAAAC-TTTCCTTTAAAATAACT
1 AAAAAAATCAAAATTTTATTTTAAAAATTTAAACTTTTCCTTTAAAATAACT
* *
46098553 AAAAAAA-CATATTTTTATTT
1 AAAAAAATCAAAATTTTATTT
46098573 CTTGAAAGTC
Statistics
Matches: 130, Mismatches: 26, Indels: 35
0.68 0.14 0.18
Matches are distributed among these distances:
44 9 0.07
45 10 0.08
47 6 0.05
48 9 0.07
50 11 0.08
51 23 0.18
52 14 0.11
53 2 0.02
54 13 0.10
55 20 0.15
56 8 0.06
57 5 0.04
ACGTcount: A:0.47, C:0.11, G:0.02, T:0.40
Consensus pattern (52 bp):
AAAAAAATCAAAATTTTATTTTAAAAATTTAAACTTTTCCTTTAAAATAACT
Found at i:46098548 original size:153 final size:148
Alignment explanation
Indices: 46098200--46098606 Score: 546
Period size: 153 Copynumber: 2.7 Consensus size: 148
46098190 CGAAATAGTT
* * * * * *
46098200 AAAAGAAATCAAAACTTTGTTTTAAAAATTTAAACTTTCCTTTAAAATGATTTAAAAAATAGATT
1 AAAAAAAATCAAAACTTTGTTTTAAAAATTTAAACTTTCCTTTAAAATAACTAAAAAAACAAATT
* * * * * *
46098265 TTTATTTTTTAGAATCAAAACATTCTCATTTTTTAAAAAATACAATTTTTCTTAAAGATTAAAGT
66 TTTATTTTTCAAAATCTAAACTTTCTCCTTTTTTAAAAAATACAATTTTTCTTAAAGATTAAAGC
** **
46098330 TTTTATTTTGAAGTTGTT
131 TTTTATTTAAAAGTTGAA
*
46098348 AAAAAAAATCAAAACTTTATTTTAAAAATTTAAACTTTCCTTTAAAATAACTAAAAAAAACAAAT
1 AAAAAAAATCAAAACTTTGTTTTAAAAATTTAAACTTTCCTTTAAAATAACT-AAAAAAACAAAT
46098413 TTTTATTTTTCAAAATCTAAACTTTCTCCTTTTTTAAAAAA-ACACTATTTTTCTTAAAGATTAA
65 TTTTATTTTTCAAAATCTAAACTTTCTCCTTTTTTAAAAAATACA--ATTTTTCTTAAAGATTAA
46098477 AGCTTTTACTTTAAAATAGTTGAA
128 AGCTTTTA-TTT-AAA-AGTTGAA
* *
46098501 AAAAAAAATCAAAATTTTGTTTTAAAAATTTAAACTTTCCTTTAAAATAACTAAAAAAACATATT
1 AAAAAAAATCAAAACTTTGTTTTAAAAATTTAAACTTTCCTTTAAAATAACTAAAAAAACAAATT
* * *
46098566 TTTATTTCTTGAAAGTCTAAACTTTCTCCCTTTTTAAAAAA
66 TTTATTT-TTCAAAATCTAAACTTTCTCCTTTTTTAAAAAA
46098607 GAAAAACTAA
Statistics
Matches: 229, Mismatches: 23, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
148 51 0.22
149 45 0.20
150 25 0.11
151 3 0.01
152 20 0.09
153 85 0.37
ACGTcount: A:0.44, C:0.10, G:0.04, T:0.42
Consensus pattern (148 bp):
AAAAAAAATCAAAACTTTGTTTTAAAAATTTAAACTTTCCTTTAAAATAACTAAAAAAACAAATT
TTTATTTTTCAAAATCTAAACTTTCTCCTTTTTTAAAAAATACAATTTTTCTTAAAGATTAAAGC
TTTTATTTAAAAGTTGAA
Found at i:46106825 original size:17 final size:16
Alignment explanation
Indices: 46106795--46106829 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
46106785 AATAGGAAGA
*
46106795 AATATATATTAAATTG
1 AATATATATGAAATTG
46106811 AATATCATATGAAATTG
1 AATAT-ATATGAAATTG
46106828 AA
1 AA
46106830 GCAAATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.51, C:0.03, G:0.09, T:0.37
Consensus pattern (16 bp):
AATATATATGAAATTG
Found at i:46117690 original size:16 final size:15
Alignment explanation
Indices: 46117663--46117696 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
46117653 ATAACTAGTA
*
46117663 TATAATTATATTTAT
1 TATAATTATATTAAT
46117678 TATAATATATATTAAT
1 TATAAT-TATATTAAT
46117694 TAT
1 TAT
46117697 TATCAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATAATTATATTAAT
Found at i:46118400 original size:25 final size:26
Alignment explanation
Indices: 46118358--46118411 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
46118348 TTCTCCTAAA
**
46118358 TTTCAATTTTATTTAATTATTTAAT-T
1 TTTCAATTTTATAGAATTA-TTAATAT
46118384 TTTCAA-TTTATAGAATTATTAATAT
1 TTTCAATTTTATAGAATTATTAATAT
46118409 TTT
1 TTT
46118412 ATACTAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 5 0.20
25 14 0.56
26 6 0.24
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (26 bp):
TTTCAATTTTATAGAATTATTAATAT
Found at i:46124180 original size:41 final size:41
Alignment explanation
Indices: 46124135--46124408 Score: 431
Period size: 41 Copynumber: 6.6 Consensus size: 41
46124125 GGTTTTAAAA
*
46124135 CCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
*
46124176 CCTAGCAGGCTAAGTGCCGGTGATCTGAATAAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
46124217 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* *
46124258 CCTAGCAGGCTAAGTGCTGGTGAACTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* *
46124299 CCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGTTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* * *
46124340 CCTAGTAGGCTAAGTGTCGGTGATCTGAATCAGGCTTTAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* *
46124381 CCTAACAGGGCTAAGTGCCAGTGGATCT
1 CCTAGCA-GGCTAAGTGCCGGT-GATCT
46124409 ATTTAAATTA
Statistics
Matches: 213, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
41 196 0.92
42 12 0.06
43 5 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (41 bp):
CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
Found at i:46130659 original size:51 final size:50
Alignment explanation
Indices: 46130594--46130788 Score: 230
Period size: 51 Copynumber: 3.9 Consensus size: 50
46130584 CAATGATGTT
* * * *
46130594 CGATTCACATAGTAGCCTACTCATAGTACTACACATGTGACCATTACCATC
1 CGATACACATAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATC
* * *
46130645 CGATACACATAGTAGCCTGCACATAGTACTACACACGTGATCGAAACTATC
1 CGATACACATAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATC
* * * * *
46130696 CGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTC
1 CGATACACATAGTAGCCTGCACATAGTACTACACACGTGACCATACCA-TC
* *
46130746 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA
1 CGATACACATAGTAGCCTGCACATAGTACTACACACGTGACCA
46130789 CCACTTTCAC
Statistics
Matches: 122, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
49 2 0.02
50 41 0.34
51 77 0.63
52 2 0.02
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.23
Consensus pattern (50 bp):
CGATACACATAGTAGCCTGCACATAGTACTACACACGTGACCATACCATC
Found at i:46130777 original size:101 final size:101
Alignment explanation
Indices: 46130601--46130785 Score: 291
Period size: 101 Copynumber: 1.8 Consensus size: 101
46130591 GTTCGATTCA
* *
46130601 CATAGTAGCCTACTCATAGTACTACACATGTGACCATTACCATCCGATACACATAGTAGCCTGCA
1 CATAGTAGCCTACACATAGTACTACACATGCGACCA-TACCATCCGATACACATAGTAGCCTGCA
46130666 CATAGTACTACACACGTGATCGAAACTATCCGGTACG
65 CATAGTACTACACACGTGATCGAAACTATCCGGTACG
* * * *
46130703 CATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCCGGTACACGTAGTAGCCTGCA
1 CATAGTAGCCTACACATAGTACTACACATGCGACCATACCA-TCCGATACACATAGTAGCCTGCA
46130767 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
46130786 CCACCACTTT
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
100 4 0.05
101 40 0.53
102 32 0.42
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (101 bp):
CATAGTAGCCTACACATAGTACTACACATGCGACCATACCATCCGATACACATAGTAGCCTGCAC
ATAGTACTACACACGTGATCGAAACTATCCGGTACG
Found at i:46135754 original size:15 final size:15
Alignment explanation
Indices: 46135734--46135765 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
46135724 GTGCTTTATT
46135734 GTTGAATGTATGATC
1 GTTGAATGTATGATC
46135749 GTTGAATGTATGATC
1 GTTGAATGTATGATC
46135764 GT
1 GT
46135766 ATCACTGTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.06, G:0.28, T:0.41
Consensus pattern (15 bp):
GTTGAATGTATGATC
Found at i:46135881 original size:34 final size:34
Alignment explanation
Indices: 46135838--46135907 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 34
46135828 TTCAAGAGGA
*
46135838 AAGTTAGAACACCAACACAAAAATCACAACTAAG
1 AAGTTAGAACACCAAAACAAAAATCACAACTAAG
* *
46135872 AAGTTAGAACACCAAAACGAGAATCACAACTAAG
1 AAGTTAGAACACCAAAACAAAAATCACAACTAAG
46135906 AA
1 AA
46135908 ATAAAAGTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.56, C:0.21, G:0.11, T:0.11
Consensus pattern (34 bp):
AAGTTAGAACACCAAAACAAAAATCACAACTAAG
Found at i:46147761 original size:12 final size:13
Alignment explanation
Indices: 46147744--46147772 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
46147734 CTCATACATG
46147744 AATAAATAAA-GC
1 AATAAATAAATGC
46147756 AATAAATAAATGC
1 AATAAATAAATGC
46147769 AATA
1 AATA
46147773 GATATAGCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:46152820 original size:9 final size:9
Alignment explanation
Indices: 46152806--46152832 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
46152796 TAAGACTAAA
46152806 GATGAGCAT
1 GATGAGCAT
46152815 GATGAGCAT
1 GATGAGCAT
46152824 GATGAGCAT
1 GATGAGCAT
46152833 CTTAGAGTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.33, T:0.22
Consensus pattern (9 bp):
GATGAGCAT
Found at i:46157231 original size:18 final size:20
Alignment explanation
Indices: 46157195--46157232 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
46157185 GGATAATATC
*
46157195 ATATTAAAATTAGATTAAAT
1 ATATTAAAATAAGATTAAAT
46157215 ATATT-AAATAAGA-TAAAT
1 ATATTAAAATAAGATTAAAT
46157233 TAAATAGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 7 0.41
20 5 0.29
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (20 bp):
ATATTAAAATAAGATTAAAT
Found at i:46157434 original size:14 final size:15
Alignment explanation
Indices: 46157400--46157433 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
46157390 TTAACTGCTT
**
46157400 AAAAATAAGTGTTGA
1 AAAAATAAGTACTGA
46157415 AAAAATAAGTACTGA
1 AAAAATAAGTACTGA
46157430 AAAA
1 AAAA
46157434 TTTAGTCTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.62, C:0.03, G:0.15, T:0.21
Consensus pattern (15 bp):
AAAAATAAGTACTGA
Found at i:46159081 original size:24 final size:24
Alignment explanation
Indices: 46159053--46159098 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
46159043 ACCAAAATGA
46159053 CCACATACATATATCAACATAAGG
1 CCACATACATATATCAACATAAGG
46159077 CCACATACATATATCAACATAA
1 CCACATACATATATCAACATAA
46159099 CAACCAATAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.48, C:0.26, G:0.04, T:0.22
Consensus pattern (24 bp):
CCACATACATATATCAACATAAGG
Found at i:46159108 original size:24 final size:24
Alignment explanation
Indices: 46159052--46159109 Score: 82
Period size: 24 Copynumber: 2.4 Consensus size: 24
46159042 TACCAAAATG
*
46159052 ACCACATACATATATCAACATAAG
1 ACCACATACATATATCAACATAAA
*
46159076 GCCACATACATATATCAACATAACA
1 ACCACATACATATATCAACATAA-A
46159101 ACCA-ATACA
1 ACCACATACA
46159110 AATCCAAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
24 27 0.90
25 3 0.10
ACGTcount: A:0.50, C:0.28, G:0.03, T:0.19
Consensus pattern (24 bp):
ACCACATACATATATCAACATAAA
Found at i:46166080 original size:28 final size:28
Alignment explanation
Indices: 46166025--46166081 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
46166015 TAATTTAATA
*
46166025 AATTTATTAATATGATATTTGTACTTTT
1 AATTTATTAATATGATACTTGTACTTTT
*
46166053 AATTTATTTAATAT-AGTACTTGTATTTTT
1 AATTTA-TTAATATGA-TACTTGTACTTTT
46166082 CTTTTGGCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 7 0.28
29 18 0.72
ACGTcount: A:0.32, C:0.04, G:0.07, T:0.58
Consensus pattern (28 bp):
AATTTATTAATATGATACTTGTACTTTT
Found at i:46168957 original size:23 final size:23
Alignment explanation
Indices: 46168930--46168976 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
46168920 TTGAAGGACC
*
46168930 TTGAAAAGACCTTGAAAAATATA
1 TTGAAAAGACCTTGAAAAAGATA
46168953 TTGAAAAGACCTTGAAAAAGATA
1 TTGAAAAGACCTTGAAAAAGATA
46168976 T
1 T
46168977 AGAATTCCAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.51, C:0.09, G:0.15, T:0.26
Consensus pattern (23 bp):
TTGAAAAGACCTTGAAAAAGATA
Found at i:46168973 original size:12 final size:11
Alignment explanation
Indices: 46168926--46168970 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
46168916 AAGTTTGAAG
46168926 GACCTTGAAAA
1 GACCTTGAAAA
46168937 GACCTTGAAAAA
1 GACCTTG-AAAA
* **
46168949 TATATTGAAAA
1 GACCTTGAAAA
46168960 GACCTTGAAAA
1 GACCTTGAAAA
46168971 AGATATAGAA
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
11 19 0.70
12 8 0.30
ACGTcount: A:0.49, C:0.13, G:0.16, T:0.22
Consensus pattern (11 bp):
GACCTTGAAAA
Found at i:46169510 original size:16 final size:16
Alignment explanation
Indices: 46169489--46169540 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
46169479 AATGCATAAC
46169489 TTCCAAGAACTCAATT
1 TTCCAAGAACTCAATT
* *
46169505 TTCCAATGCA-T-AA-C
1 TTCCAA-GAACTCAATT
46169519 TTCCAAGAACTCAATT
1 TTCCAAGAACTCAATT
46169535 TTCCAA
1 TTCCAA
46169541 TCTTTCTCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
13 2 0.07
14 7 0.25
15 4 0.14
16 13 0.46
17 2 0.07
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.31
Consensus pattern (16 bp):
TTCCAAGAACTCAATT
Found at i:46169513 original size:30 final size:30
Alignment explanation
Indices: 46169479--46169541 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
46169469 ACAAGAAAGA
46169479 AATGCATAACTTCCAAGAACTCAATTTTCC
1 AATGCATAACTTCCAAGAACTCAATTTTCC
46169509 AATGCATAACTTCCAAGAACTCAATTTTCC
1 AATGCATAACTTCCAAGAACTCAATTTTCC
46169539 AAT
1 AAT
46169542 CTTTCTCAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.30
Consensus pattern (30 bp):
AATGCATAACTTCCAAGAACTCAATTTTCC
Found at i:46170327 original size:6 final size:6
Alignment explanation
Indices: 46170313--46170344 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
46170303 GGCAATGTTG
*
46170313 CTAAAA CTAACA CTAACA CTAACA CTAACA CT
1 CTAACA CTAACA CTAACA CTAACA CTAACA CT
46170345 TCCACATAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19
Consensus pattern (6 bp):
CTAACA
Found at i:46175554 original size:3 final size:3
Alignment explanation
Indices: 46175546--46175613 Score: 127
Period size: 3 Copynumber: 22.7 Consensus size: 3
46175536 CATGAAGTGC
46175546 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
46175594 ACT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT AT
46175614 GTACAAGAAG
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:46176763 original size:3 final size:3
Alignment explanation
Indices: 46176755--46176783 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
46176745 CCTTGAAACT
46176755 TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
46176784 TGCTTCTTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.34, G:0.00, T:0.34
Consensus pattern (3 bp):
TCA
Found at i:46177753 original size:39 final size:39
Alignment explanation
Indices: 46177708--46177785 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
46177698 TCTTGCCCAG
46177708 ATAGGAATTTTTGTTATTTATTTAGAAGTTAAATATATT
1 ATAGGAATTTTTGTTATTTATTTAGAAGTTAAATATATT
46177747 ATAGGAATTTTTGTTATTTATTTAGAAGTTAAATATATT
1 ATAGGAATTTTTGTTATTTATTTAGAAGTTAAATATATT
46177786 TTAATAATTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.36, C:0.00, G:0.13, T:0.51
Consensus pattern (39 bp):
ATAGGAATTTTTGTTATTTATTTAGAAGTTAAATATATT
Found at i:46177795 original size:39 final size:39
Alignment explanation
Indices: 46177712--46177795 Score: 141
Period size: 39 Copynumber: 2.2 Consensus size: 39
46177702 GCCCAGATAG
*
46177712 GAATTTTTGTTATTTATTTAGAAGTTAAATATATTATAG
1 GAATTTTTGTTATTTATTTAGAAGTTAAATATATTATAA
*
46177751 GAATTTTTGTTATTTATTTAGAAGTTAAATATATTTTAA
1 GAATTTTTGTTATTTATTTAGAAGTTAAATATATTATAA
*
46177790 TAATTT
1 GAATTT
46177796 ATCTTGATTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.36, C:0.00, G:0.11, T:0.54
Consensus pattern (39 bp):
GAATTTTTGTTATTTATTTAGAAGTTAAATATATTATAA
Found at i:46178194 original size:22 final size:23
Alignment explanation
Indices: 46178169--46178212 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
46178159 TTATTTTTTA
46178169 TTTATTTTT-TA-ATTAATAAATT
1 TTTATTTTTATATA-TAATAAATT
46178191 TTTATTTTTATATATAATAAAT
1 TTTATTTTTATATATAATAAAT
46178213 ATGTAATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 9 0.45
23 10 0.50
24 1 0.05
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (23 bp):
TTTATTTTTATATATAATAAATT
Found at i:46178306 original size:19 final size:20
Alignment explanation
Indices: 46178284--46178325 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
46178274 TATATAAAAA
46178284 ATAAT-AAAAAATATTTTAT
1 ATAATGAAAAAATATTTTAT
**
46178303 ATAATGAAACCATATTTTAT
1 ATAATGAAAAAATATTTTAT
46178323 ATA
1 ATA
46178326 TATCATTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.40
Consensus pattern (20 bp):
ATAATGAAAAAATATTTTAT
Found at i:46178619 original size:45 final size:45
Alignment explanation
Indices: 46178470--46178621 Score: 196
Period size: 45 Copynumber: 3.3 Consensus size: 45
46178460 TTATAAAATC
*
46178470 AAATAATTATTTCAAATATCATTATTATTTTTATATGTAAAATATTTT
1 AAATAATTATTTCAAATATCATTATTA---TTATATGTGAAATATTTT
* * * * * *
46178518 AAATACTTATTCCAAATACCATTATTTTTATGTGTGAAATATTTC
1 AAATAATTATTTCAAATATCATTATTATTATATGTGAAATATTTT
* *
46178563 AATTAATTATTTCAAATATCACTATTATTATATGTGAAATATTTT
1 AAATAATTATTTCAAATATCATTATTATTATATGTGAAATATTTT
46178608 AAATAATTATTTCA
1 AAATAATTATTTCA
46178622 CATACATGCA
Statistics
Matches: 88, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
45 65 0.74
48 23 0.26
ACGTcount: A:0.40, C:0.08, G:0.04, T:0.48
Consensus pattern (45 bp):
AAATAATTATTTCAAATATCATTATTATTATATGTGAAATATTTT
Found at i:46182186 original size:27 final size:27
Alignment explanation
Indices: 46182149--46182237 Score: 142
Period size: 27 Copynumber: 3.3 Consensus size: 27
46182139 GGATCAAAAT
*
46182149 ATACCCCTGTAGGGTAAAATGACTGTA
1 ATACCCCTGTAGGGTAAAATGACCGTA
46182176 ATACCCCTGTAGGGTAAAATGACCGTA
1 ATACCCCTGTAGGGTAAAATGACCGTA
* *
46182203 ATACCTCTGTAAGGTAAAATGACCGTA
1 ATACCCCTGTAGGGTAAAATGACCGTA
*
46182230 ATGCCCCT
1 ATACCCCT
46182238 CGAGGTTAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (27 bp):
ATACCCCTGTAGGGTAAAATGACCGTA
Found at i:46182247 original size:27 final size:26
Alignment explanation
Indices: 46182149--46182250 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 26
46182139 GGATCAAAAT
*
46182149 ATACCCCTGTAGGGTAAAATGACTGTA
1 ATACCCCTGTA-GGTAAAATGACCGTA
46182176 ATACCCCTGTAGGGTAAAATGACCGTA
1 ATACCCCTGTA-GGTAAAATGACCGTA
*
46182203 ATACCTCTGTAAGGTAAAATGACCGTA
1 ATACCCCTGT-AGGTAAAATGACCGTA
* *
46182230 ATGCCCCTCG-AGGTTAAATGA
1 ATACCCCT-GTAGGTAAAATGA
46182251 TTGATTTGTC
Statistics
Matches: 68, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
26 10 0.15
27 56 0.82
28 2 0.03
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.25
Consensus pattern (26 bp):
ATACCCCTGTAGGTAAAATGACCGTA
Found at i:46182279 original size:24 final size:24
Alignment explanation
Indices: 46182246--46182304 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
46182236 CTCGAGGTTA
*
46182246 AATGATTGATTTGTCTGTG-TTTGG
1 AATGACTGATTTGTCTGTGATTT-G
*
46182270 TATGACTGATTTGTCTGTGATTTG
1 AATGACTGATTTGTCTGTGATTTG
46182294 AATGACTGATT
1 AATGACTGATT
46182305 CTGAGCATGG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 28 0.90
25 3 0.10
ACGTcount: A:0.20, C:0.07, G:0.25, T:0.47
Consensus pattern (24 bp):
AATGACTGATTTGTCTGTGATTTG
Found at i:46182549 original size:32 final size:32
Alignment explanation
Indices: 46182476--46182710 Score: 168
Period size: 32 Copynumber: 7.4 Consensus size: 32
46182466 GTTGTGATGC
* * * *
46182476 TACTGAGGGCTTTGTGCC-AGTCATAGTACCGT
1 TACTGATGGCTTTGTACCGA-TCATATTACTGT
* * *
46182508 TGCTAATGGCTTTGTACCGATCATATTACCGT
1 TACTGATGGCTTTGTACCGATCATATTACTGT
* * * * *
46182540 TACCGATGGCTATGTACTGATAATTTTACTGT
1 TACTGATGGCTTTGTACCGATCATATTACTGT
* * * * * *
46182572 TATTGATGGCTGTGTGCCGATAATATCACTGC
1 TACTGATGGCTTTGTACCGATCATATTACTGT
* * * * *
46182604 TATTGATGGATTTGTACAGATCATGTTACCGT
1 TACTGATGGCTTTGTACCGATCATATTACTGT
* * * *
46182636 TACTGATGGCTATGTGCCGATCATATCACTGC
1 TACTGATGGCTTTGTACCGATCATATTACTGT
* * *
46182668 TACTGATGGCTTTGTGCCAATCACATTACTG-
1 TACTGATGGCTTTGTACCGATCATATTACTGT
*
46182699 TACTTATGGCTT
1 TACTGATGGCTT
46182711 GTAGTCATTC
Statistics
Matches: 158, Mismatches: 44, Indels: 3
0.77 0.21 0.01
Matches are distributed among these distances:
31 11 0.07
32 146 0.92
33 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.37
Consensus pattern (32 bp):
TACTGATGGCTTTGTACCGATCATATTACTGT
Found at i:46182727 original size:22 final size:21
Alignment explanation
Indices: 46182702--46182765 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 21
46182692 ATTACTGTAC
46182702 TTATGGCTTGTAGTCATTCTAT
1 TTATGGCTT-TAGTCATTCTAT
* *
46182724 TTATAGCTTATAG-CTATCCTAT
1 TTATGGCTT-TAGTC-ATTCTAT
*
46182746 TTATGACTCTTAGTCATTCT
1 TTATGGCT-TTAGTCATTCT
46182766 GACTACTAGC
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
21 1 0.03
22 30 0.91
23 2 0.06
ACGTcount: A:0.22, C:0.17, G:0.12, T:0.48
Consensus pattern (21 bp):
TTATGGCTTTAGTCATTCTAT
Found at i:46184371 original size:34 final size:33
Alignment explanation
Indices: 46184302--46184372 Score: 79
Period size: 34 Copynumber: 2.1 Consensus size: 33
46184292 TTTTGATTTT
* *
46184302 ATATATGTTTTGGAAATATGACATTTTAATTTG
1 ATATATGTTTTGGAAATATGACATTCTAATCTG
* * * *
46184335 ATATATGTTTTTGATAATGTGTCATTCTGATCTG
1 ATATATGTTTTGGA-AATATGACATTCTAATCTG
46184369 ATAT
1 ATAT
46184373 CCATACATGT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
33 13 0.42
34 18 0.58
ACGTcount: A:0.30, C:0.06, G:0.15, T:0.49
Consensus pattern (33 bp):
ATATATGTTTTGGAAATATGACATTCTAATCTG
Found at i:46186853 original size:487 final size:487
Alignment explanation
Indices: 46185940--46186914 Score: 1941
Period size: 487 Copynumber: 2.0 Consensus size: 487
46185930 GAGATAAGGT
*
46185940 TGACCAGCCTCGTCTTCGTGCAAATAATGTTAGACATGCACCTCACACGAATAATGAGCCTTTCG
1 TGACCAGCCTCGTCTTCGTGCAAATAATGTTAGACATGCACCTCACACGAATAATGAGACTTTCG
46186005 TTAATAATGATCTTGGACAACCTTCTTTGGCTAAACCAAATTTCTCAATTCAATAATTTCATGGA
66 TTAATAATGATCTTGGACAACCTTCTTTGGCTAAACCAAATTTCTCAATTCAATAATTTCATGGA
46186070 ATGAAAGATCCCGAAGCATATTGTGAGTGGGAATAAAAAATTGAACTTATGTTCCGTTACTATAA
131 ATGAAAGATCCCGAAGCATATTGTGAGTGGGAATAAAAAATTGAACTTATGTTCCGTTACTATAA
46186135 ATGCCCAGAGTTGGTGGATTCAAATTCGAATTAATCGACAACGAAACTATGAAAGAGAAATTAAA
196 ATGCCCAGAGTTGGTGGATTCAAATTCGAATTAATCGACAACGAAACTATGAAAGAGAAATTAAA
46186200 ACATGGGACGAGTTGAATCAAGTAATGCGAAAGCGTTTCATTCCTTCTATTACCAAAGATCGGTC
261 ACATGGGACGAGTTGAATCAAGTAATGCGAAAGCGTTTCATTCCTTCTATTACCAAAGATCGGTC
46186265 AAAACGAAACTTCGACGCCATGTACAAGTTAACGGATCAGTTGATAAGTACTTCAAGAAGAGATG
326 AAAACGAAACTTCGACGCCATGTACAAGTTAACGGATCAGTTGATAAGTACTTCAAGAAGAGATG
46186330 ACCAAATTAAAGGAAGAGTACAACTGATGTTTCACCTATTGTGAAATGTTATTGGTGTATTTCAA
391 ACCAAATTAAAGGAAGAGTACAACTGATGTTTCACCTATTGTGAAATGTTATTGGTGTATTTCAA
46186395 AAGATCATGAGGGTTACGGATGTCCAATTAAA
456 AAGATCATGAGGGTTACGGATGTCCAATTAAA
46186427 TGACCAGCCTCGTCTTCGTGCAAATAATGTTAGACATGCACCTCACACGAATAATGAGACTTTCG
1 TGACCAGCCTCGTCTTCGTGCAAATAATGTTAGACATGCACCTCACACGAATAATGAGACTTTCG
46186492 TTAATAATGATCTTGGACAACCTTCTTTGGCTAAACCAAATTTCTCAATTCAATAATTTCATGGA
66 TTAATAATGATCTTGGACAACCTTCTTTGGCTAAACCAAATTTCTCAATTCAATAATTTCATGGA
46186557 ATGAAAGATCCCGAAGCATATTGTGAGTGGGAATAAAAAATTGAACTTATGTTCCGTTACTATAA
131 ATGAAAGATCCCGAAGCATATTGTGAGTGGGAATAAAAAATTGAACTTATGTTCCGTTACTATAA
46186622 ATGCCCAGAGTTGGTGGATTCAAATTCGAATTAATCGACAACGAAACTATGAAAGAGAAATTAAA
196 ATGCCCAGAGTTGGTGGATTCAAATTCGAATTAATCGACAACGAAACTATGAAAGAGAAATTAAA
46186687 ACATGGGACGAGTTGAATCAAGTAATGCGAAAGCGTTTCATTCCTTCTATTACCAAAGATCGGTC
261 ACATGGGACGAGTTGAATCAAGTAATGCGAAAGCGTTTCATTCCTTCTATTACCAAAGATCGGTC
46186752 AAAACGAAACTTCGACGCCATGTACAAGTTAACGGATCAGTTGATAAGTACTTCAAGAAGAGATG
326 AAAACGAAACTTCGACGCCATGTACAAGTTAACGGATCAGTTGATAAGTACTTCAAGAAGAGATG
46186817 ACCAAATTAAAGGAAGAGTACAACTGATGTTTCACCTATTGTGAAATGTTATTGGTGTATTTCAA
391 ACCAAATTAAAGGAAGAGTACAACTGATGTTTCACCTATTGTGAAATGTTATTGGTGTATTTCAA
46186882 AAGATCATGAGGGTTACGGATGTCCAATTAAA
456 AAGATCATGAGGGTTACGGATGTCCAATTAAA
46186914 T
1 T
46186915 ATCCAAATAG
Statistics
Matches: 487, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
487 487 1.00
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (487 bp):
TGACCAGCCTCGTCTTCGTGCAAATAATGTTAGACATGCACCTCACACGAATAATGAGACTTTCG
TTAATAATGATCTTGGACAACCTTCTTTGGCTAAACCAAATTTCTCAATTCAATAATTTCATGGA
ATGAAAGATCCCGAAGCATATTGTGAGTGGGAATAAAAAATTGAACTTATGTTCCGTTACTATAA
ATGCCCAGAGTTGGTGGATTCAAATTCGAATTAATCGACAACGAAACTATGAAAGAGAAATTAAA
ACATGGGACGAGTTGAATCAAGTAATGCGAAAGCGTTTCATTCCTTCTATTACCAAAGATCGGTC
AAAACGAAACTTCGACGCCATGTACAAGTTAACGGATCAGTTGATAAGTACTTCAAGAAGAGATG
ACCAAATTAAAGGAAGAGTACAACTGATGTTTCACCTATTGTGAAATGTTATTGGTGTATTTCAA
AAGATCATGAGGGTTACGGATGTCCAATTAAA
Found at i:46190679 original size:299 final size:299
Alignment explanation
Indices: 46190141--46190741 Score: 1148
Period size: 299 Copynumber: 2.0 Consensus size: 299
46190131 ATTAGGGACT
46190141 ATAACACCTTATACCTATCCCGGTCGCTGAGCCCGAATATCAGGATGCCATACCACCGTCTCATG
1 ATAACACCTTATACCTATCCCGGTCGCTGAGCCCGAATATCAGGATGCCATACCACCGTCTCATG
*
46190206 TCATACACAACAATTAAAAGCTCATTCTCAATGAAACGTCTTCCATTTTAGTATTCGTATAGGTT
66 TCATACACAACAATTAAAAGCTCATTCTCAATGAAACATCTTCCATTTTAGTATTCGTATAGGTT
46190271 TTAAGTCAATCTTACTTTTAAGTTATCATTGTTACATGATAAACATGCATCAGATAGTCTTATAA
131 TTAAGTCAATCTTACTTTTAAGTTATCATTGTTACATGATAAACATGCATCAGATAGTCTTATAA
*
46190336 CAATAGTTTAACATACATATGGTCTGTTTAGAAAAATCTCAAAACTGACTACATAGGTATTGGTA
196 CAATAGTTTAACATACATAAGGTCTGTTTAGAAAAATCTCAAAACTGACTACATAGGTATTGGTA
*
46190401 CTAGAATATGGGTACCAATATTTCTCTCAAGTGGTATCG
261 CTAGAACATGGGTACCAATATTTCTCTCAAGTGGTATCG
*
46190440 ATAACACCTTATACCTATCCCGGTCGCTGAGCTCGAATATCAGGATGCCATACCACCGTCTCATG
1 ATAACACCTTATACCTATCCCGGTCGCTGAGCCCGAATATCAGGATGCCATACCACCGTCTCATG
46190505 TCATACACAACAATTAAAAGCTCATTCTCAATGAAACATCTTCCATTTTAGTATTCGTATAGGTT
66 TCATACACAACAATTAAAAGCTCATTCTCAATGAAACATCTTCCATTTTAGTATTCGTATAGGTT
*
46190570 TTAAGTCAATCTTACTTTTAAGTTATCATTGTTACATGCTAAACATGCATCAGATAGTCTTATAA
131 TTAAGTCAATCTTACTTTTAAGTTATCATTGTTACATGATAAACATGCATCAGATAGTCTTATAA
*
46190635 CAATAGTTTAACATGCATAAGGTCTGTTTAGAAAAATCTCAAAACTGACTACATAGGTATTGGTA
196 CAATAGTTTAACATACATAAGGTCTGTTTAGAAAAATCTCAAAACTGACTACATAGGTATTGGTA
46190700 CTAGAACATGGGTACCAATATTTCTCTCAAGTGGTATCG
261 CTAGAACATGGGTACCAATATTTCTCTCAAGTGGTATCG
46190739 ATA
1 ATA
46190742 CCGCTTGGAA
Statistics
Matches: 296, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
299 296 1.00
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33
Consensus pattern (299 bp):
ATAACACCTTATACCTATCCCGGTCGCTGAGCCCGAATATCAGGATGCCATACCACCGTCTCATG
TCATACACAACAATTAAAAGCTCATTCTCAATGAAACATCTTCCATTTTAGTATTCGTATAGGTT
TTAAGTCAATCTTACTTTTAAGTTATCATTGTTACATGATAAACATGCATCAGATAGTCTTATAA
CAATAGTTTAACATACATAAGGTCTGTTTAGAAAAATCTCAAAACTGACTACATAGGTATTGGTA
CTAGAACATGGGTACCAATATTTCTCTCAAGTGGTATCG
Found at i:46201890 original size:40 final size:40
Alignment explanation
Indices: 46201835--46202106 Score: 445
Period size: 40 Copynumber: 6.8 Consensus size: 40
46201825 ATTTGAATAC
46201835 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
46201875 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
46201915 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG--ATAT
*
46201957 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
46201997 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
46202037 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
46202077 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
46202107 TTGTGGTTAT
Statistics
Matches: 219, Mismatches: 11, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
40 179 0.82
42 40 0.18
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:46202052 original size:122 final size:122
Alignment explanation
Indices: 46201827--46202106 Score: 476
Period size: 122 Copynumber: 2.3 Consensus size: 122
46201817 GCATGAGCAT
*
46201827 TTGA-ATACATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCC
1 TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCC
* *
46201891 GAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
66 GAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
*
46201948 TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCC
1 TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCC
46202013 GAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
66 GAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
* * *
46202070 TTG-C-TATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
46202107 TTGTGGTTAT
Statistics
Matches: 151, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
120 30 0.20
121 5 0.03
122 116 0.77
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (122 bp):
TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCC
GAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
Found at i:46206291 original size:19 final size:19
Alignment explanation
Indices: 46206254--46206288 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
46206244 TTAATCATCC
46206254 CTCATCTCATCATATCTCA
1 CTCATCTCATCATATCTCA
46206273 CTCAT-TCATCAT-TCTC
1 CTCATCTCATCATATCTC
46206289 TCAACTCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 7 0.44
19 5 0.31
ACGTcount: A:0.23, C:0.37, G:0.00, T:0.40
Consensus pattern (19 bp):
CTCATCTCATCATATCTCA
Found at i:46212227 original size:15 final size:15
Alignment explanation
Indices: 46212207--46212237 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
46212197 CCAACCTTCA
46212207 AATTTTACCTCAATT
1 AATTTTACCTCAATT
46212222 AATTTTACCTCAATT
1 AATTTTACCTCAATT
46212237 A
1 A
46212238 TACATAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.45
Consensus pattern (15 bp):
AATTTTACCTCAATT
Found at i:46214435 original size:11 final size:11
Alignment explanation
Indices: 46214419--46214445 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
46214409 TAGAAATTAG
46214419 TTTGTGAAACT
1 TTTGTGAAACT
46214430 TTTGTGAAACT
1 TTTGTGAAACT
46214441 TTTGT
1 TTTGT
46214446 ATTGATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:46215975 original size:92 final size:92
Alignment explanation
Indices: 46215839--46216032 Score: 286
Period size: 92 Copynumber: 2.1 Consensus size: 92
46215829 TTGATTTTAG
* *
46215839 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTA-TATAATTA
1 TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTA-AATTA
*
46215903 TAT-TAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
46215930 TAAATTCATATAAGAAAATTTTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TAAATTCATATAAGAAAA-TTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTA
46215995 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
46216023 CAAATTCATA
1 TAAATTCATA
46216033 AACTATAATC
Statistics
Matches: 93, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
91 17 0.18
92 43 0.46
93 30 0.32
94 3 0.03
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:46216080 original size:48 final size:52
Alignment explanation
Indices: 46216010--46216108 Score: 118
Period size: 52 Copynumber: 2.0 Consensus size: 52
46216000 AATAATTATT
46216010 ATTTTAAATTATACAAATTCATA-AACT-A-T-AATCATATTAGTTATAATA
1 ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
* * **
46216058 ATTTTAAATTTTATTAAA-TCATATATTTAATTAAATCATATTAGTTATAAT
1 ATTTTAAATTATA-CAAATTCATATAACTAATTAAATCATATTAGTTATAAT
46216109 CATATATTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
48 17 0.40
49 5 0.12
50 1 0.02
51 1 0.02
52 18 0.43
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.46
Consensus pattern (52 bp):
ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
Found at i:46216090 original size:17 final size:17
Alignment explanation
Indices: 46216065--46216098 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
46216055 ATAATTTTAA
*
46216065 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
46216082 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
46216099 TAGTTATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:46216115 original size:17 final size:16
Alignment explanation
Indices: 46216070--46216117 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
46216060 TTTAAATTTT
46216070 ATTAAATCATATATTTA
1 ATTAAATCATATA-TTA
46216087 ATTAAATC--ATATTA
1 ATTAAATCATATATTA
*
46216101 GTTATAATCATATATTA
1 ATTA-AATCATATATTA
46216118 TGATTTGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 6 0.22
15 7 0.26
17 14 0.52
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (16 bp):
ATTAAATCATATATTA
Found at i:46216189 original size:18 final size:17
Alignment explanation
Indices: 46216158--46216192 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
46216148 ATTATTAAGA
46216158 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
46216175 ATTTTAATTATATTATAT
1 ATTTT-ATTAAATTATAT
46216193 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:46216258 original size:129 final size:130
Alignment explanation
Indices: 46216105--46216338 Score: 425
Period size: 129 Copynumber: 1.8 Consensus size: 130
46216095 ATATTAGTTA
*
46216105 TAATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 TAATAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
* *
46216170 TATATATTTTAATTATATTATATTTAATAATAATTATGTTATTTTATATTTTACAGTATCATATT
66 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTTACAGTATCATATT
*
46216235 TAATAATA-ATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 TAATAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
46216299 TATATATTTTAATTAAAATATATTTAATAATAATTATGTT
66 TATATATTTTAATTAAAATATATTTAATAATAATTATGTT
46216339 TAAATATGAT
Statistics
Matches: 100, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
129 93 0.93
130 7 0.07
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (130 bp):
TAATAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
TATATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTTACAGTATCATATT
Found at i:46216315 original size:18 final size:17
Alignment explanation
Indices: 46216287--46216321 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
46216277 ATTATTAAGA
*
46216287 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
46216304 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
46216322 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:46216433 original size:144 final size:147
Alignment explanation
Indices: 46216275--46216546 Score: 487
Period size: 144 Copynumber: 1.9 Consensus size: 147
46216265 ATAAGAATAT
*
46216275 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
46216340 AAATATGATTAAATTATTTATTATTGAT-AT-TAATCTTATTAAAATTTAAATAA-AATAATTTA
66 AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
46216402 CCAAAACAAATTTCTGC
131 CCAAAACAAATTTCTGC
46216419 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
46216484 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAAT--ATAATCTTATTAAAATTTAAATAACAATAA
46216547 CAATAATCAT
Statistics
Matches: 121, Mismatches: 2, Indels: 5
0.95 0.02 0.04
Matches are distributed among these distances:
144 91 0.75
145 2 0.02
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (147 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
CCAAAACAAATTTCTGC
Found at i:46216459 original size:18 final size:17
Alignment explanation
Indices: 46216431--46216465 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
46216421 ATTATTAAGA
*
46216431 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
46216448 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
46216466 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:46216676 original size:44 final size:45
Alignment explanation
Indices: 46216627--46216721 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
46216617 TTACACCTCT
* *
46216627 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
46216671 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
46216716 ATTACA
1 ATTACA
46216722 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:46216721 original size:16 final size:16
Alignment explanation
Indices: 46216700--46216756 Score: 60
Period size: 16 Copynumber: 3.2 Consensus size: 16
46216690 TTGATTTGCT
46216700 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
46216716 ATTACACCTCTAATCCAATCC
1 ATTACACCTCT-AT----TCC
*
46216737 AATACACCTCTATTCC
1 ATTACACCTCTATTCC
46216753 ATTA
1 ATTA
46216757 TTTTAAACTG
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
16 17 0.50
17 2 0.06
20 2 0.06
21 13 0.38
ACGTcount: A:0.32, C:0.35, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:46216742 original size:21 final size:21
Alignment explanation
Indices: 46216713--46216753 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
46216703 ACACCTCTAT
*
46216713 TCCATTACACCTCTAATCCAA
1 TCCAATACACCTCTAATCCAA
*
46216734 TCCAATACACCTCTATTCCA
1 TCCAATACACCTCTAATCCA
46216754 TTATTTTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.39, G:0.00, T:0.29
Consensus pattern (21 bp):
TCCAATACACCTCTAATCCAA
Found at i:46219849 original size:20 final size:20
Alignment explanation
Indices: 46219824--46219929 Score: 90
Period size: 20 Copynumber: 5.3 Consensus size: 20
46219814 TAAATGTGTT
46219824 CAGGGGTACCGAAGTACAAA
1 CAGGGGTACCGAAGTACAAA
* * * *
46219844 CAGGGGCA-CGTATGTGCAAT
1 CAGGGGTACCG-AAGTACAAA
* *
46219864 CACGGGTACCGAAGTATAAA
1 CAGGGGTACCGAAGTACAAA
** * *
46219884 CAAGGGG-ACATATGTGCAAA
1 C-AGGGGTACCGAAGTACAAA
46219904 CAGGGGTACCGAAGTACAAA
1 CAGGGGTACCGAAGTACAAA
46219924 CAGGGG
1 CAGGGG
46219930 CACGTATGTG
Statistics
Matches: 62, Mismatches: 20, Indels: 8
0.69 0.22 0.09
Matches are distributed among these distances:
19 7 0.11
20 49 0.79
21 6 0.10
ACGTcount: A:0.36, C:0.19, G:0.32, T:0.13
Consensus pattern (20 bp):
CAGGGGTACCGAAGTACAAA
Found at i:46219871 original size:40 final size:40
Alignment explanation
Indices: 46219827--46219945 Score: 186
Period size: 40 Copynumber: 3.0 Consensus size: 40
46219817 ATGTGTTCAG
46219827 GGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATCAC
1 GGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATCAC
* * * *
46219867 GGGTACCGAAGTATAAACAAGGGG-ACATATGTGCAAACAG
1 GGGTACCGAAGTACAAAC-AGGGGCACGTATGTGCAATCAC
46219907 GGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATCA
1 GGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATCA
46219946 TGCAATAATT
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
39 5 0.07
40 60 0.86
41 5 0.07
ACGTcount: A:0.35, C:0.19, G:0.30, T:0.15
Consensus pattern (40 bp):
GGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATCAC
Found at i:46222573 original size:22 final size:22
Alignment explanation
Indices: 46222530--46222594 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
46222520 TGCCAGTAGT
* *
46222530 CAGAATGGCTA-AGAGCCGTAAA
1 CAGAATAGCTACA-AGCCATAAA
* * *
46222552 CAGGATAGCTATAAGCTATAAA
1 CAGAATAGCTACAAGCCATAAA
*
46222574 CAGAATGGCTACAAGCCATAA
1 CAGAATAGCTACAAGCCATAA
46222595 GTACAGTAAT
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
22 33 0.97
23 1 0.03
ACGTcount: A:0.43, C:0.18, G:0.22, T:0.17
Consensus pattern (22 bp):
CAGAATAGCTACAAGCCATAAA
Found at i:46222641 original size:32 final size:32
Alignment explanation
Indices: 46222586--46222913 Score: 392
Period size: 32 Copynumber: 10.3 Consensus size: 32
46222576 GAATGGCTAC
* *
46222586 AAGCCATAAGT-ACAGTAATATGATTGGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* *
46222617 AAGCCATCAGTAGCAGTGATATGATCGGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
** ** *
46222649 CAA-CCATCAACAATGGTAATATGATCGGTACA
1 -AAGCCATCAGTAACAGTAATATGATCGGCACA
*
46222681 AAGCCATCAGTAACGGTAATATGATCGGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
** *
46222713 AAGCCATCAGTAATGGTAATATGATCGACACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* *
46222745 AAGCCATCCGTAAC-GATATTATGATCGGCACA
1 AAGCCATCAGTAACAG-TAATATGATCGGCACA
** * *
46222777 AAGCCATCAGTAATGGTAATATAATCGACACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* * *
46222809 AAGCCATCAGTAACGGTAATATGATCGACACG
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
*
46222841 AAGCCATCAGTAACAGTGATATGATCGGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* *
46222873 AAGCCATCAATAACAGTAATATGATCAGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
46222905 AAGCCATCA
1 AAGCCATCA
46222914 TTAGCATCGC
Statistics
Matches: 256, Mismatches: 36, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
31 13 0.05
32 240 0.94
33 3 0.01
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.20
Consensus pattern (32 bp):
AAGCCATCAGTAACAGTAATATGATCGGCACA
Found at i:46223207 original size:26 final size:27
Alignment explanation
Indices: 46223183--46223331 Score: 162
Period size: 27 Copynumber: 5.6 Consensus size: 27
46223173 CCTCGAGGGT
46223183 ATTACGATCATTTTACCCTACAGGGGC
1 ATTACGATCATTTTACCCTACAGGGGC
* *
46223210 ATTAC-AGTCATTTTACCTTACAGGGGT
1 ATTACGA-TCATTTTACCCTACAGGGGC
* *
46223237 ATTACGGTCATTTTATCCTACAGGGGC
1 ATTACGATCATTTTACCCTACAGGGGC
* *
46223264 ATTACGGTCATTTTACCCTATA-GGGC
1 ATTACGATCATTTTACCCTACAGGGGC
* * *
46223290 ATTAC-AGT-AATTTACCTTACAGGGGT
1 ATTACGA-TCATTTTACCCTACAGGGGC
*
46223316 ATTACGATTATTTTAC
1 ATTACGATCATTTTAC
46223332 AACCTTTTCG
Statistics
Matches: 102, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
25 10 0.10
26 20 0.20
27 72 0.71
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
ATTACGATCATTTTACCCTACAGGGGC
Found at i:46223220 original size:27 final size:27
Alignment explanation
Indices: 46223190--46223320 Score: 167
Period size: 27 Copynumber: 4.9 Consensus size: 27
46223180 GGTATTACGA
46223190 TCATTTTACCCTACAGGGGCATTACAG
1 TCATTTTACCCTACAGGGGCATTACAG
* * *
46223217 TCATTTTACCTTACAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGCATTACAG
* *
46223244 TCATTTTATCCTACAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGCATTACAG
*
46223271 TCATTTTACCCTATA-GGGCATTACAG
1 TCATTTTACCCTACAGGGGCATTACAG
* * *
46223297 T-AATTTACCTTACAGGGGTATTAC
1 TCATTTTACCCTACAGGGGCATTAC
46223321 GATTATTTTA
Statistics
Matches: 90, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
25 10 0.11
26 19 0.21
27 61 0.68
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.34
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGCATTACAG
Found at i:46225426 original size:30 final size:28
Alignment explanation
Indices: 46225392--46225447 Score: 76
Period size: 30 Copynumber: 1.9 Consensus size: 28
46225382 TCATAATGAA
* *
46225392 ATATATTTAATATATTTTTATTATATAATT
1 ATATAATTAATAT-TTTAT-TTATATAATT
46225422 ATATAATTAATATTTTATTTATATAA
1 ATATAATTAATATTTTATTTATATAA
46225448 ATAAAAGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 8 0.33
29 4 0.17
30 12 0.50
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (28 bp):
ATATAATTAATATTTTATTTATATAATT
Found at i:46227914 original size:49 final size:50
Alignment explanation
Indices: 46227816--46228152 Score: 288
Period size: 51 Copynumber: 6.7 Consensus size: 50
46227806 TCATTCGATA
* * * *
46227816 CACGTAGTAGCCTTCACATAGTACTACAAACATGATCAAGTTTTTCGGTT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTACGGTT
* * *
46227866 CACGTATTAGCCTTCACATAGT-CTACATACGTGATCAAGTTTTACGGTT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTACGGTT
* *
46227915 CACGTAGTAGCCTTTACATAGTACTACACACGTGACCAAAGCTTTT-TGGTAT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACC-AAG-TTTTACGGT-T
* * * *** *
46227967 -ACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTA-CGGTT
* * *
46228017 CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCT-CGGTA
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACC-AAG-TTTTACGGTT
* ** * * * * *
46228068 CACATTCTAGCCTTCACTTAGTACTACACATGTGACC-ATTATTTATCGATA
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGT-TTTA-CGGTT
* * * *
46228119 CACGTAGTAGCATTCACACAATACTACATACGTG
1 CACGTAGTAGCCTTCACATAGTACTACACACGTG
46228153 TTCATCGATA
Statistics
Matches: 229, Mismatches: 46, Indels: 23
0.77 0.15 0.08
Matches are distributed among these distances:
48 1 0.00
49 50 0.22
50 35 0.15
51 135 0.59
52 6 0.03
53 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.31
Consensus pattern (50 bp):
CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTACGGTT
Found at i:46228027 original size:102 final size:102
Alignment explanation
Indices: 46227810--46228152 Score: 390
Period size: 102 Copynumber: 3.4 Consensus size: 102
46227800 CTTTTATCAT
* * * * *
46227810 TCGATACACGTAGTAGCCTTCACATAGTACTACAAACATGATC-AAG-TTTTTCGGT-TCACGTA
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTT-GGTAT-ACATA
* * * * * ***
46227872 TTAGCCTTCACATAGT-CTACATACGTGATCAAGTTTTA
64 CTAGCCTTCACTTAGTACTACACATGTGACCATCATTTA
* * * * *
46227910 -CGGTTCACGTAGTAGCCTTTACATAGTACTACACACGTGACCAAAGCTTTTTGGTATACATAGT
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTTGGTATACATACT
46227974 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
* * * * *
46228011 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATTCT
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTTGGTATACATACT
*
46228076 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
* * *
46228113 TCGATACACGTAGTAGCATTCACACAATACTACATACGTG
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
46228153 TTCATCGATA
Statistics
Matches: 210, Mismatches: 28, Indels: 8
0.85 0.11 0.03
Matches are distributed among these distances:
99 36 0.17
100 24 0.11
101 22 0.10
102 128 0.61
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.31
Consensus pattern (102 bp):
TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTTGGTATACATACT
AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
Found at i:46228127 original size:153 final size:150
Alignment explanation
Indices: 46227810--46228146 Score: 342
Period size: 153 Copynumber: 2.2 Consensus size: 150
46227800 CTTTTATCAT
* * * *
46227810 TCGATACACGTAGTAGCCTTCACATAGTACTACAAACATGATCAAGTTTTTCGGTTCACGTATTA
1 TCGATACACGTAGTAGCCTTCACATAGTACTACAAACATGACCAAGTTTATCGATTCACGTAGTA
* * * * * * * *
46227875 GCCTTCACATAGTCTACATACGTGATCAAGTTTTACGGTTCACGTAGTAGCCTTTACATAGTACT
66 GCCTTCACACAGTCTACACACGTGACCAAGTTCTACGGTACACATACTAGCCTTCACATAGTACT
*
46227940 ACACACGTGACCAAAGCTTTT
131 ACACACGTGACCAAA-CTTTA
* * * **
46227961 TGGTATACA--TAGTAGCCTTCACTTAGTACTACACATGTGACCATCA-TTTATCGATTCACGTA
1 TCG-ATACACGTAGTAGCCTTCACATAGTACTACAAACATGACCA--AGTTTATCGATTCACGTA
* *
46228023 GTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCT-CGGTACACATTCTAGCCTTCACTT
63 GTAGCCTTCACACAGT-CTACACACGTGACC-AAG-TTCTACGGTACACATACTAGCCTTCACAT
* *
46228087 AGTACTACACATGTGACCATTA-TTTA
125 AGTACTACACACGTGACCA-AACTTTA
* * *
46228113 TCGATACACGTAGTAGCATTCACACAATACTACA
1 TCGATACACGTAGTAGCCTTCACATAGTACTACA
46228147 TACGTGTTCA
Statistics
Matches: 150, Mismatches: 27, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
150 29 0.19
151 35 0.23
152 23 0.15
153 59 0.39
154 4 0.03
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.31
Consensus pattern (150 bp):
TCGATACACGTAGTAGCCTTCACATAGTACTACAAACATGACCAAGTTTATCGATTCACGTAGTA
GCCTTCACACAGTCTACACACGTGACCAAGTTCTACGGTACACATACTAGCCTTCACATAGTACT
ACACACGTGACCAAACTTTA
Found at i:46234204 original size:16 final size:16
Alignment explanation
Indices: 46234183--46234244 Score: 63
Period size: 16 Copynumber: 3.9 Consensus size: 16
46234173 ACCATGTTAA
46234183 TAGAAAGCATTTTTTG
1 TAGAAAGCATTTTTTG
*
46234199 TAGAAACCATTTTTT-
1 TAGAAAGCATTTTTTG
* * **
46234214 CAAAAAATATTTTTTTG
1 TAGAAAGCA-TTTTTTG
46234231 TAGAAAGCATTTTT
1 TAGAAAGCATTTTT
46234245 CATAAAGCAC
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
15 5 0.14
16 25 0.71
17 5 0.14
ACGTcount: A:0.35, C:0.08, G:0.11, T:0.45
Consensus pattern (16 bp):
TAGAAAGCATTTTTTG
Found at i:46250750 original size:27 final size:26
Alignment explanation
Indices: 46250720--46250794 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 26
46250710 AAAACAACCA
*
46250720 TCAAAATAAGAAAAATCAAAATATAGT-
1 TCAAAATAA-AAAAATCAAAAGA-AGTC
* *
46250747 TCAAAATAAAAATAAACTAAAGAAGTC
1 TCAAAATAAAAA-AATCAAAAGAAGTC
46250774 TCACAAATAAAAAAATCAAAA
1 TCA-AAATAAAAAAATCAAAA
46250795 ATCAAAATAA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
26 6 0.15
27 25 0.62
28 9 0.22
ACGTcount: A:0.65, C:0.11, G:0.05, T:0.19
Consensus pattern (26 bp):
TCAAAATAAAAAAATCAAAAGAAGTC
Found at i:46261538 original size:44 final size:44
Alignment explanation
Indices: 46261488--46261575 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
46261478 CACCAAATCG
*
46261488 GGATAACCTCCTCAATCCCATAATATTCTCCTAAAATCACTCCA
1 GGATAACCTCCCCAATCCCATAATATTCTCCTAAAATCACTCCA
*
46261532 GGATAACCTCCCCAATCCCATAATCTTCTCCTAAAATCACTCCA
1 GGATAACCTCCCCAATCCCATAATATTCTCCTAAAATCACTCCA
46261576 ACCTTCCCAC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.33, C:0.36, G:0.05, T:0.26
Consensus pattern (44 bp):
GGATAACCTCCCCAATCCCATAATATTCTCCTAAAATCACTCCA
Found at i:46262621 original size:143 final size:143
Alignment explanation
Indices: 46262360--46262621 Score: 328
Period size: 143 Copynumber: 1.8 Consensus size: 143
46262350 TCGATTTGTT
* * * *
46262360 CGACTAGCGCTGGATGCAACTTTCGTCAGTTTATCTAACTAGTGTTGGGCACACATTCGTCGGTT
1 CGACTAGCGCTGGATACAACTTTCGTCAGTTTATCTAACTAGTGCTGGGCACACAATCGTCGGTA
* ** *
46262425 TATCCGACTAGCACTCGGTTCAAACATCGTTGGTTTATCCAACTAGAGTTGGGCTCACTATTGAT
66 TAACCGACTAGCACTCGGCACAAACATCGTTGGTTTATCCAACTAGAGCTGGGCTCACTATTGAT
46262490 TTTTTGGTATATC
131 TTTTTGGTATATC
* * * * *
46262503 CGACTAGCGCTGGGTACAACTTTTGAT-AGTTTATCTGACTAGTGCTGGGCACATAATCGTTGGT
1 CGACTAGCGCTGGATACAACTTTCG-TCAGTTTATCTAACTAGTGCTGGGCACACAATCGTCGGT
* * * * * * *
46262567 ATAACTGACTAGCATTGGGCACAATCATCTTTGGTTTGTCCAACTTGAGCTGGGC
65 ATAACCGACTAGCACTCGGCACAAACATCGTTGGTTTATCCAACTAGAGCTGGGC
46262622 ACATAAACAT
Statistics
Matches: 98, Mismatches: 20, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
143 97 0.99
144 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.23, T:0.34
Consensus pattern (143 bp):
CGACTAGCGCTGGATACAACTTTCGTCAGTTTATCTAACTAGTGCTGGGCACACAATCGTCGGTA
TAACCGACTAGCACTCGGCACAAACATCGTTGGTTTATCCAACTAGAGCTGGGCTCACTATTGAT
TTTTTGGTATATC
Found at i:46264201 original size:3 final size:3
Alignment explanation
Indices: 46264193--46264278 Score: 69
Period size: 3 Copynumber: 30.0 Consensus size: 3
46264183 CATCCAACAA
*
46264193 AAT AAT AAT AAT AAT AA- AAGT AAT AAT AA- AA- AAT -AT GAT AAT
1 AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT
* *
46264235 AAT AAT AACT AAA AAT AAT AA- AAG AAT AAGT AA- AAT AA- AAT AAT
1 AAT AAT AA-T AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT
46264279 TAAATAAAAA
Statistics
Matches: 70, Mismatches: 4, Indels: 18
0.76 0.04 0.20
Matches are distributed among these distances:
2 14 0.20
3 48 0.69
4 8 0.11
ACGTcount: A:0.69, C:0.01, G:0.05, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:46264293 original size:25 final size:25
Alignment explanation
Indices: 46264246--46264293 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
46264236 ATAATAACTA
*
46264246 AAAATAATAAAAGAATAAGTAAAAT
1 AAAATAATAAAAGAAAAAGTAAAAT
* * *
46264271 AAAATAATTAAATAAAAATTAAA
1 AAAATAATAAAAGAAAAAGTAAA
46264294 TAGAAGAACA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.23
Consensus pattern (25 bp):
AAAATAATAAAAGAAAAAGTAAAAT
Found at i:46264491 original size:22 final size:23
Alignment explanation
Indices: 46264451--46264494 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
46264441 AGGGAAGAAT
*
46264451 GGGGAAGGTGGGGACGAGAGGAA
1 GGGGAAGGTAGGGACGAGAGGAA
*
46264474 GGGGAAGG-AGGGATGAGAGGA
1 GGGGAAGGTAGGGACGAGAGGA
46264495 GATCGAAGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.32, C:0.02, G:0.61, T:0.05
Consensus pattern (23 bp):
GGGGAAGGTAGGGACGAGAGGAA
Found at i:46274110 original size:51 final size:51
Alignment explanation
Indices: 46274028--46274365 Score: 332
Period size: 51 Copynumber: 6.6 Consensus size: 51
46274018 GATGAACACG
*
46274028 TGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATAATT-GTCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAAT-ATTGGTCACA
* * * * * * *
46274079 TGTCTAGTACTAAGTGAAGGCTACAATGTGTA-CTGAGAAGCT-TTGGTCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GATAA-ATATTGGTCACA
* *
46274130 TGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGA-TGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAAT-ATTGGTCACA
* * * *
46274181 TGTGTAGTACTAAGTGAAGGCTACTATGTGTATCGA-AAAGTTTTGGTCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAA-TATTGGTCACA
* * * * *
46274232 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAAACTTGATCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATA-TTGGTCACA
* * * * *
46274283 TGTGTAGTACTATGTGAAAGCTACTACGTGAACCG-TAAA-ACTTGATCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATA-TTGGTCACA
*
46274333 TGTGTAGTACTATGTGGAGGCTACTACGTGTAT
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTAT
46274366 TGAATGATAA
Statistics
Matches: 242, Mismatches: 35, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
50 47 0.19
51 193 0.80
52 2 0.01
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.31
Consensus pattern (51 bp):
TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATATTGGTCACA
Found at i:46274200 original size:102 final size:101
Alignment explanation
Indices: 46274024--46274362 Score: 425
Period size: 102 Copynumber: 3.3 Consensus size: 101
46274014 TATTGATGAA
* * * *
46274024 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATAATTGTCACATGTCTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGTAGTAC
*
46274089 TAAGTGAAGGCTACAATGTGTACTGAGAAGCTTTGGT
66 TAAGTGAAGGCTACTATGTGTACTGA-AAGCTTTGGT
* *
46274126 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGTAGTAC
*
46274191 TAAGTGAAGGCTACTATGTGTA-TCGAAAAGTTTTGGT
66 TAAGTGAAGGCTACTATGTGTACT-G-AAAGCTTTGGT
* * *
46274228 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAA-AACTTGATCACGTGTGTAGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAA--TGGTCACATGTGTAGT
* * * * * * *
46274291 ACTATGTGAAAGCTACTACGTGAACCGTAAAAC-TTGAT
64 ACTAAGTGAAGGCTACTATGTGTACTG-AAAGCTTTGGT
*
46274329 CACGTGTGTAGTACTATGTGGAGGCTACTACGTG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
46274363 TATTGAATGA
Statistics
Matches: 211, Mismatches: 21, Indels: 11
0.87 0.09 0.05
Matches are distributed among these distances:
100 1 0.00
101 42 0.20
102 167 0.79
103 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (101 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACTATGTGTACTGAAAGCTTTGGT
Found at i:46274283 original size:153 final size:152
Alignment explanation
Indices: 46274019--46274365 Score: 412
Period size: 153 Copynumber: 2.3 Consensus size: 152
46274009 TAAGGTATTG
* * *
46274019 ATGAACACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATAATTGTCACATGTCT
1 ATGATCACATGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATAATTGTCACATGTCT
* * * * * * * *
46274084 AGTACTAAGTGAAGGCTACAATGTGTACTGAGAAGCTTTGGTCACGTGTGTAGTACTGTGTGAAG
66 AGTACTAAGTGAAGGCTACAACGTGAACCGAAAAACTTTGATCACGTGTGTAGTACTATGTGAAA
* **
46274149 GCTACTACGTGAATCGATAAATG
131 GCTACTACGTGAACCG-TAAAAC
* * * * *
46274172 ATGGTCACATGTGTAGTACTAAGTGAAGGCTACTATGTGTATCGA-AAAGT-TTTGGTCACGTGT
1 ATGATCACATGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAA-TAATT-GTCACATGT
* * *
46274235 GTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAAAC-TTGATCACGTGTGTAGTACTATGTG
64 CTAGTACTAAGTGAAGGCTACAACGTGAACCG-AAAAACTTTGATCACGTGTGTAGTACTATGTG
46274299 AAAGCTACTACGTGAACCGTAAAAC
128 AAAGCTACTACGTGAACCGTAAAAC
* * *
46274324 TTGATCACGTGTGTAGTACTATGTGGAGGCTACTACGTGTAT
1 ATGATCACATGTGTAGTACTATGTGAAGGCTACTACGTGTAT
46274366 TGAATGATAA
Statistics
Matches: 163, Mismatches: 28, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
152 45 0.28
153 114 0.70
154 4 0.02
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (152 bp):
ATGATCACATGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATAATTGTCACATGTCT
AGTACTAAGTGAAGGCTACAACGTGAACCGAAAAACTTTGATCACGTGTGTAGTACTATGTGAAA
GCTACTACGTGAACCGTAAAAC
Found at i:46279793 original size:21 final size:21
Alignment explanation
Indices: 46279767--46279819 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
46279757 CGCTGTTTCT
* *
46279767 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAATAACC
** *
46279788 AATCTCACTACTACAATAACT
1 AATCTCACCGCTACAATAACC
46279809 AATCTCACCGC
1 AATCTCACCGC
46279820 CACCGCTGTT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.34, C:0.36, G:0.06, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAATAACC
Found at i:46290068 original size:15 final size:15
Alignment explanation
Indices: 46290048--46290079 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
46290038 CGACGGTGTA
46290048 TAGCAGAAACAGAGG
1 TAGCAGAAACAGAGG
46290063 TAGCAGAAACAGAGG
1 TAGCAGAAACAGAGG
46290078 TA
1 TA
46290080 CAGTCTATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.12, G:0.31, T:0.09
Consensus pattern (15 bp):
TAGCAGAAACAGAGG
Found at i:46291553 original size:25 final size:25
Alignment explanation
Indices: 46291497--46291556 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
46291487 AAAAAAACAT
* *
46291497 TTTAATTTTCCTATTATTATTATTA
1 TTTATTTTTACTATTATTATTATTA
46291522 TTTATTTTTACTATT-TTATT-TTA
1 TTTATTTTTACTATTATTATTATTA
46291545 TTTTCATTTTTA
1 -TTT-ATTTTTA
46291557 TTTTTACAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 3 0.10
24 8 0.26
25 20 0.65
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (25 bp):
TTTATTTTTACTATTATTATTATTA
Found at i:46291559 original size:6 final size:6
Alignment explanation
Indices: 46291510--46291562 Score: 54
Period size: 6 Copynumber: 8.5 Consensus size: 6
46291500 AATTTTCCTA
* *
46291510 TTATTA TTATTAT TTATTT TTACTATT TTA-TT TTATTT TCATTT TTATTT
1 TTATTT TTATT-T TTATTT TTA-T-TT TTATTT TTATTT TTATTT TTATTT
46291560 TTA
1 TTA
46291563 CAGGAAACAT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
5 5 0.12
6 24 0.60
7 6 0.15
8 5 0.12
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.74
Consensus pattern (6 bp):
TTATTT
Found at i:46291561 original size:18 final size:20
Alignment explanation
Indices: 46291511--46291562 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 20
46291501 ATTTTCCTAT
*
46291511 TATTATTATTATTTATTTTTAC
1 TATT-TTATT-TTTATTTTCAC
46291533 TATTTTA-TTTTATTTTCA-
1 TATTTTATTTTTATTTTCAC
46291551 T-TTTTATTTTTA
1 TATTTTATTTTTA
46291563 CAGGAAACAT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
17 5 0.18
18 6 0.21
19 9 0.32
20 1 0.04
21 3 0.11
22 4 0.14
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.73
Consensus pattern (20 bp):
TATTTTATTTTTATTTTCAC
Found at i:46303048 original size:21 final size:20
Alignment explanation
Indices: 46303019--46303061 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 20
46303009 TTTATTATCT
*
46303019 ATTGTATATTATTTATAAACAC
1 ATTGTATA-TATTT-TAAAAAC
46303041 ATTG-ATATATTTTAAAAAC
1 ATTGTATATATTTTAAAAAC
46303060 AT
1 AT
46303062 AATTTTCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 8 0.40
20 5 0.25
21 3 0.15
22 4 0.20
ACGTcount: A:0.44, C:0.07, G:0.05, T:0.44
Consensus pattern (20 bp):
ATTGTATATATTTTAAAAAC
Found at i:46306908 original size:26 final size:25
Alignment explanation
Indices: 46306862--46306910 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
46306852 ATCGATGTAT
* *
46306862 AAATAAATTGTATTGTGATAAAACA
1 AAATAAATTATATTGTAATAAAACA
*
46306887 AAATAAATATATATTTTAATAAAA
1 AAATAAAT-TATATTGTAATAAAA
46306911 TGTTTATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 8 0.40
26 12 0.60
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.35
Consensus pattern (25 bp):
AAATAAATTATATTGTAATAAAACA
Found at i:46319295 original size:23 final size:24
Alignment explanation
Indices: 46319251--46319295 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
46319241 AAAGTTAGGA
*
46319251 TCTAGTTTATCTATTTGGGATTAG
1 TCTAGTTTATCTATTTGAGATTAG
46319275 TCTA-TTTAT-TATTTGAAGATT
1 TCTAGTTTATCTATTTG-AGATT
46319296 TTATATTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 6 0.32
23 9 0.47
24 4 0.21
ACGTcount: A:0.24, C:0.07, G:0.16, T:0.53
Consensus pattern (24 bp):
TCTAGTTTATCTATTTGAGATTAG
Found at i:46327035 original size:48 final size:48
Alignment explanation
Indices: 46326964--46327060 Score: 176
Period size: 48 Copynumber: 2.0 Consensus size: 48
46326954 CATGTATATG
46326964 TCGAGGTAGTTCATATGTTCGAGTTATAATAGCCTTATTTTGTTGAAC
1 TCGAGGTAGTTCATATGTTCGAGTTATAATAGCCTTATTTTGTTGAAC
* *
46327012 TCGAGGTAGTTCATATGTTCGAGTTGTAATAGCCTTATTTTTTTGAAC
1 TCGAGGTAGTTCATATGTTCGAGTTATAATAGCCTTATTTTGTTGAAC
46327060 T
1 T
46327061 TTCTTAAATC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.24, C:0.12, G:0.21, T:0.43
Consensus pattern (48 bp):
TCGAGGTAGTTCATATGTTCGAGTTATAATAGCCTTATTTTGTTGAAC
Found at i:46328846 original size:17 final size:19
Alignment explanation
Indices: 46328807--46328850 Score: 56
Period size: 17 Copynumber: 2.4 Consensus size: 19
46328797 CTTTCATTTT
*
46328807 ATATATTTACAATTGATAT
1 ATATATTTACAATTGATAC
*
46328826 ATATATTTA-GATT-ATAC
1 ATATATTTACAATTGATAC
46328843 ATATATTT
1 ATATATTT
46328851 CTTGAATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 11 0.48
18 3 0.13
19 9 0.39
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.50
Consensus pattern (19 bp):
ATATATTTACAATTGATAC
Found at i:46330015 original size:6 final size:6
Alignment explanation
Indices: 46330004--46330031 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
46329994 GATTGATTGC
46330004 CTGATT CTGATT CTGATT CTGATT CTGA
1 CTGATT CTGATT CTGATT CTGATT CTGA
46330032 CTATGACCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.46
Consensus pattern (6 bp):
CTGATT
Done.