Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 153 of 207
Found at i:46957848 original size:30 final size:30
Alignment explanation
Indices: 46957818--46957874 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
46957808 CCACCCAACT
46957818 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
46957847 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
46957875 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:46964540 original size:20 final size:19
Alignment explanation
Indices: 46964517--46964581 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
46964507 CACATATATG
46964517 CAAACAGGGGTATTAAAGTA
1 CAAACAGGGGTATT-AAGTA
* * *
46964537 CAAACTGGGGCATGTATGTA
1 CAAACAGGGGTAT-TAAGTA
* *
46964557 CAATCA-GGGTATCGAAGTA
1 CAAACAGGGGTAT-TAAGTA
46964576 CAAACA
1 CAAACA
46964582 AGGGCACGTA
Statistics
Matches: 34, Mismatches: 10, Indels: 3
0.72 0.21 0.06
Matches are distributed among these distances:
19 14 0.41
20 19 0.56
21 1 0.03
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.20
Consensus pattern (19 bp):
CAAACAGGGGTATTAAGTA
Found at i:46964578 original size:39 final size:40
Alignment explanation
Indices: 46964444--46964601 Score: 194
Period size: 40 Copynumber: 4.0 Consensus size: 40
46964434 ATGCGTTCAA
46964444 GGGTACTGAAGTACAAACAGGGGCACGTATGTGCAATCAG
1 GGGTACTGAAGTACAAACAGGGGCACGTATGTGCAATCAG
** * * *
46964484 GGGTACTGAAGTACAAATTGGGGCACATATATGCAAACAG
1 GGGTACTGAAGTACAAACAGGGGCACGTATGTGCAATCAG
* * * * *
46964524 GGGTATTAAAGTACAAACTGGGGCATGTATGTACAATCA-
1 GGGTACTGAAGTACAAACAGGGGCACGTATGTGCAATCAG
*
46964563 GGGTA-TCGAAGTACAAACAAGGGCACGTATGTGCAATCA
1 GGGTACT-GAAGTACAAACAGGGGCACGTATGTGCAATCA
46964602 TTCAATAATT
Statistics
Matches: 99, Mismatches: 18, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
38 1 0.01
39 32 0.32
40 66 0.67
ACGTcount: A:0.35, C:0.16, G:0.28, T:0.20
Consensus pattern (40 bp):
GGGTACTGAAGTACAAACAGGGGCACGTATGTGCAATCAG
Found at i:46967034 original size:87 final size:86
Alignment explanation
Indices: 46966818--46967047 Score: 291
Period size: 87 Copynumber: 2.6 Consensus size: 86
46966808 GGTTGTCACC
* *
46966818 ATCCCTTTTCATATTTGATGGTCGAAACCATCCCTTTTCATTAATCGATGGTCATCACCATCCCT
1 ATCCCTTTTCATA-TTGATGGTCGAAACCATCCCTTTTCA-TAGTCGATGGTCGTCACCATCCCT
*
46966883 TTTCATAGTCGATAGTAAAAACT
64 TTTCATAGTCAATAGTAAAAACT
* * *
46966906 ATCCCTTTTCATATATGATGGTC-ATCACCATCCGTTTTCATAGTTGATGGTCGTCACCATCCCT
1 ATCCCTTTTCATAT-TGATGGTCGA-AACCATCCCTTTTCATAGTCGATGGTCGTCACCATCCCT
* **
46966970 TTTCATAGTCAATGGTCGAAACT
64 TTTCATAGTCAATAGTAAAAACT
* * * *
46966993 ATCCCTTTTCATAGTTGATAGTCGAAACTATCCCTTTTCATAGTGGATAGTCGTC
1 ATCCCTTTTCATA-TTGATGGTCGAAACCATCCCTTTTCATAGTCGATGGTCGTC
46967048 GATACGTTGT
Statistics
Matches: 123, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
87 87 0.71
88 36 0.29
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (86 bp):
ATCCCTTTTCATATTGATGGTCGAAACCATCCCTTTTCATAGTCGATGGTCGTCACCATCCCTTT
TCATAGTCAATAGTAAAAACT
Found at i:46967035 original size:58 final size:58
Alignment explanation
Indices: 46966813--46967036 Score: 256
Period size: 58 Copynumber: 3.8 Consensus size: 58
46966803 ACGATGGTTG
* * * *
46966813 TCACCATCCCTTTTCATATTTGATGGTCGAAACCATCCCTTTTCATTAATCGATGGTCA
1 TCACCATCCCTTTTCATAGTTGATAGTCGAAACCATCCCTTTTCA-TAGTCAATGGTCA
* ** *
46966872 TCACCATCCCTTTTCATAGTCGATAGTAAAAACTATCCCTTTTCATA-T-ATGATGGTCA
1 TCACCATCCCTTTTCATAGTTGATAGTCGAAACCATCCCTTTTCATAGTCA--ATGGTCA
* * **
46966930 TCACCATCCGTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAGTCAATGGTCGA
1 TCACCATCCCTTTTCATAGTTGATAGTCGAAACCATCCCTTTTCATAGTCAATGGTC-A
* * *
46966989 -AACTATCCCTTTTCATAGTTGATAGTCGAAACTATCCCTTTTCATAGT
1 TCACCATCCCTTTTCATAGTTGATAGTCGAAACCATCCCTTTTCATAGT
46967037 GGATAGTCGT
Statistics
Matches: 138, Mismatches: 22, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
57 1 0.01
58 95 0.69
59 41 0.30
60 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.37
Consensus pattern (58 bp):
TCACCATCCCTTTTCATAGTTGATAGTCGAAACCATCCCTTTTCATAGTCAATGGTCA
Found at i:46967041 original size:29 final size:29
Alignment explanation
Indices: 46966815--46967045 Score: 225
Period size: 29 Copynumber: 7.9 Consensus size: 29
46966805 GATGGTTGTC
*
46966815 ACCATCCCTTTTCATATTTGATGGTCGAA
1 ACCATCCCTTTTCATAGTTGATGGTCGAA
* * *
46966844 ACCATCCCTTTTCATTAATCGATGGTC-ATC
1 ACCATCCCTTTTCA-TAGTTGATGGTCGA-A
* * **
46966874 ACCATCCCTTTTCATAGTCGATAGTAAAA
1 ACCATCCCTTTTCATAGTTGATGGTCGAA
* *
46966903 ACTATCCCTTTTCATA-TATGATGGTC-ATC
1 ACCATCCCTTTTCATAGT-TGATGGTCGA-A
* **
46966932 ACCATCCGTTTTCATAGTTGATGGTCGTC
1 ACCATCCCTTTTCATAGTTGATGGTCGAA
**
46966961 ACCATCCCTTTTCATAGTCAATGGTCGAA
1 ACCATCCCTTTTCATAGTTGATGGTCGAA
* *
46966990 ACTATCCCTTTTCATAGTTGATAGTCGAA
1 ACCATCCCTTTTCATAGTTGATGGTCGAA
* * *
46967019 ACTATCCCTTTTCATAGTGGATAGTCG
1 ACCATCCCTTTTCATAGTTGATGGTCG
46967046 TCGATACGTT
Statistics
Matches: 170, Mismatches: 25, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
28 2 0.01
29 142 0.84
30 26 0.15
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (29 bp):
ACCATCCCTTTTCATAGTTGATGGTCGAA
Found at i:46968398 original size:35 final size:36
Alignment explanation
Indices: 46968346--46968415 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 36
46968336 TATTATAATA
* * *
46968346 ACTATCACATGGTATGAA-AACATACTCGCATATTT
1 ACTATCACATGGAATGAATAACATACCCACATATTT
*
46968381 ACTATCATATGGAATGAATAACATACCCACATATT
1 ACTATCACATGGAATGAATAACATACCCACATATT
46968416 CTCTTTCACA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
35 16 0.53
36 14 0.47
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (36 bp):
ACTATCACATGGAATGAATAACATACCCACATATTT
Found at i:46971541 original size:26 final size:26
Alignment explanation
Indices: 46971486--46971543 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
46971476 AATATCAGCT
* * * * *
46971486 CAAAGCTTGCTAAATATTCATTGGCT
1 CAAAGCATGCTAAATATACACTGACA
46971512 CAAAGCATGCTAAATATACACTGACA
1 CAAAGCATGCTAAATATACACTGACA
46971538 CAAAGC
1 CAAAGC
46971544 CTAATACACT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.40, C:0.22, G:0.14, T:0.24
Consensus pattern (26 bp):
CAAAGCATGCTAAATATACACTGACA
Found at i:46974711 original size:18 final size:19
Alignment explanation
Indices: 46974688--46974726 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
46974678 CCAAATTTCC
*
46974688 AACCTTAAACTC-TAAAAA
1 AACCTTAAACCCTTAAAAA
*
46974706 AACCTTGAACCCTTAAAAA
1 AACCTTAAACCCTTAAAAA
46974725 AA
1 AA
46974727 GGTTGAGGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.54, C:0.23, G:0.03, T:0.21
Consensus pattern (19 bp):
AACCTTAAACCCTTAAAAA
Found at i:46977663 original size:18 final size:18
Alignment explanation
Indices: 46977637--46977694 Score: 50
Period size: 18 Copynumber: 3.4 Consensus size: 18
46977627 AATTTCTTTA
*
46977637 TATACTTTTTGAAATTTT
1 TATAATTTTTGAAATTTT
* * *
46977655 TATAATTTTTTAAA-ATA
1 TATAATTTTTGAAATTTT
*
46977672 TATAAATTTTG--ATTTT
1 TATAATTTTTGAAATTTT
46977688 TATAATT
1 TATAATT
46977695 ATTTTTAATT
Statistics
Matches: 30, Mismatches: 9, Indels: 4
0.70 0.21 0.09
Matches are distributed among these distances:
15 1 0.03
16 7 0.23
17 10 0.33
18 12 0.40
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (18 bp):
TATAATTTTTGAAATTTT
Found at i:46977705 original size:19 final size:19
Alignment explanation
Indices: 46977642--46977748 Score: 74
Period size: 19 Copynumber: 5.3 Consensus size: 19
46977632 CTTTATATAC
* *
46977642 TTTTTGAAATT-TTTATAA
1 TTTTTAAAATTATTTTTAA
*
46977660 TTTTTTAAAATATATAAATTTTGA
1 -TTTTTAAAAT-TAT---TTTTAA
*
46977684 TTTTTATAATTATTTTTAA
1 TTTTTAAAATTATTTTTAA
*
46977703 -TTTTAAACATTATTTTGAA
1 TTTTTAAA-ATTATTTTTAA
*
46977722 TTTTAGAAAATTATTTTGTAA
1 TTTT-TAAAATTATTTT-TAA
46977743 TTTTTA
1 TTTTTA
46977749 TTGAGAGAGA
Statistics
Matches: 69, Mismatches: 10, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
18 6 0.09
19 24 0.35
20 13 0.19
21 10 0.14
22 3 0.04
23 9 0.13
24 4 0.06
ACGTcount: A:0.36, C:0.01, G:0.05, T:0.59
Consensus pattern (19 bp):
TTTTTAAAATTATTTTTAA
Found at i:46977736 original size:20 final size:19
Alignment explanation
Indices: 46977677--46977746 Score: 79
Period size: 19 Copynumber: 3.6 Consensus size: 19
46977667 AAATATATAA
* *
46977677 ATTTTG-ATTTTTATAATT
1 ATTTTGAATTTTAAAAATT
* *
46977695 ATTTTTAATTTTAAACATT
1 ATTTTGAATTTTAAAAATT
46977714 ATTTTGAATTTTAGAAAATT
1 ATTTTGAATTTTA-AAAATT
46977734 ATTTTGTAATTTT
1 ATTTTG-AATTTT
46977747 TATTGAGAGA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
18 5 0.12
19 21 0.49
20 11 0.26
21 6 0.14
ACGTcount: A:0.33, C:0.01, G:0.06, T:0.60
Consensus pattern (19 bp):
ATTTTGAATTTTAAAAATT
Found at i:46979867 original size:23 final size:23
Alignment explanation
Indices: 46979837--46979894 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
46979827 GCAATAGGAG
*
46979837 ACTTTTGTTACTAGTACTCTGGT
1 ACTTTTGTTACTAGTACTCTAGT
* *
46979860 ACTTTTGTTATTAGTACTTTAGT
1 ACTTTTGTTACTAGTACTCTAGT
*
46979883 ACTTATGTTACT
1 ACTTTTGTTACT
46979895 GGCACTTCAG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.21, C:0.14, G:0.14, T:0.52
Consensus pattern (23 bp):
ACTTTTGTTACTAGTACTCTAGT
Found at i:46981830 original size:19 final size:20
Alignment explanation
Indices: 46981787--46981836 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
46981777 TGAAAAATGC
46981787 TTCTATTTTCCATGTATTTGTT
1 TTCTATTTT--ATGTATTTGTT
46981809 TTCT-TTTTATGT-TTTGTGT
1 TTCTATTTTATGTATTTGT-T
46981828 TTCTATTTT
1 TTCTATTTT
46981837 CCTTGTTGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
18 5 0.19
19 9 0.35
20 4 0.15
21 4 0.15
22 4 0.15
ACGTcount: A:0.10, C:0.10, G:0.10, T:0.70
Consensus pattern (20 bp):
TTCTATTTTATGTATTTGTT
Found at i:46996887 original size:138 final size:138
Alignment explanation
Indices: 46996627--46996888 Score: 391
Period size: 138 Copynumber: 1.9 Consensus size: 138
46996617 TTTATTAAAT
46996627 ATTTTGATGTTTGGCTAGTTAATTAAAGAAAATGACTAAATCATAAAAACTGCAAAAGTTAATCG
1 ATTTTGATGTTTGGCTAGTTAATTAAAGAAAATGACTAAATCATAAAAACTGCAAAAGTTAATCG
* * ** * *
46996692 TTATGGGCTAATACGAGTTAATGTTGAAAATATGACTAAATTCATAAAGTGTCAAAGTTAATTTG
66 CTATAGGCTAATAAAAGTTAATGTTGAAAATATGACTAAATTCAAAAAGGGTCAAAGTTAATTTG
46996757 GTTTGTTA
131 GTTTGTTA
* * *
46996765 ATTTTGATGTTTGGCTAGTTAATTAAAGAAAATGACTAAATCGTAAAAATTGTAAAAGTTAATCG
1 ATTTTGATGTTTGGCTAGTTAATTAAAGAAAATGACTAAATCATAAAAACTGCAAAAGTTAATCG
* * * *
46996830 CTATAGGCTAATAAAAGTTAATTTTGAAAAT-TAGACTAATTTGAAAAAGGGTTAAAGTT
66 CTATAGGCTAATAAAAGTTAATGTTGAAAATAT-GACTAAATTCAAAAAGGGTCAAAGTT
46996889 GTGAGTTTTT
Statistics
Matches: 110, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
137 1 0.01
138 109 0.99
ACGTcount: A:0.41, C:0.07, G:0.17, T:0.35
Consensus pattern (138 bp):
ATTTTGATGTTTGGCTAGTTAATTAAAGAAAATGACTAAATCATAAAAACTGCAAAAGTTAATCG
CTATAGGCTAATAAAAGTTAATGTTGAAAATATGACTAAATTCAAAAAGGGTCAAAGTTAATTTG
GTTTGTTA
Found at i:46999605 original size:26 final size:26
Alignment explanation
Indices: 46999569--46999620 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
46999559 CACCACTGAA
* *
46999569 TCGGGGAATCATCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
46999595 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
46999621 CTTTTCATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.21, T:0.15
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:46999697 original size:70 final size:71
Alignment explanation
Indices: 46999581--46999731 Score: 241
Period size: 72 Copynumber: 2.1 Consensus size: 71
46999571 GGGGAATCAT
*
46999581 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTT-CATTTCAAATATACAATGG
1 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATACAATGG
46999645 ATATCG
66 ATATCG
* ***
46999651 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATACAATG
46999716 GATATCG
65 GATATCG
46999723 CACTTAGCA
1 CACTTAGCA
46999732 CCACCAATGA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 16 0.22
71 28 0.38
72 30 0.41
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (71 bp):
CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATACAATGG
ATATCG
Found at i:46999774 original size:104 final size:104
Alignment explanation
Indices: 46999650--46999873 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
46999640 AATGGATATC
46999650 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
46999715 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
46999754 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
46999819 GGATCACGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
**
46999858 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
46999874 TTTATATACA
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:47000235 original size:29 final size:29
Alignment explanation
Indices: 47000202--47000265 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
47000192 TAATCCACCA
47000202 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
47000231 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
47000261 CCCAA
1 CCCAA
47000266 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:47000239 original size:30 final size:30
Alignment explanation
Indices: 47000209--47000265 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
47000199 CCACCCAACT
47000209 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
47000238 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
47000266 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:47007280 original size:104 final size:104
Alignment explanation
Indices: 47007161--47007384 Score: 337
Period size: 104 Copynumber: 2.2 Consensus size: 104
47007151 AATGGATATC
47007161 GCACTTAGCAACCCCTCGGGGG-ATACAGC-ACATAGCAACCCCCTTTCACATTTCAAAGATATG
1 GCACTTAGCAACCCCTCGGGGGAAT-CAGCAAC-TAGCAACCCCCTTTCACATTTCAAAGATATG
* * *
47007224 GTGGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
64 GTGGATCA-CGCACATAGCACCACCAATAAACCAGGGAATCA
47007265 GCACTTAGCAACCCCTCGGGGGAATCAGCAACTAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCAACTAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
47007330 GGATCACGCACATAGCACCACCCATAAATCAGGGAATCA
66 GGATCACGCACATAGCACCACCAATAAACCAGGGAATCA
**
47007369 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
47007385 TTTATATACA
Statistics
Matches: 110, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
104 105 0.95
105 5 0.05
ACGTcount: A:0.32, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCAACTAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAACCAGGGAATCA
Found at i:47007753 original size:30 final size:30
Alignment explanation
Indices: 47007717--47007777 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
47007707 TCCACCACCC
**
47007717 AACTTTTTTAAAATTACAATTTTGCCCCCA
1 AACTTTTGCAAAATTACAATTTTGCCCCCA
* * *
47007747 AACTTTTGCATAATTACACTTTTGTCCCCA
1 AACTTTTGCAAAATTACAATTTTGCCCCCA
47007777 A
1 A
47007778 GCTCGGAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.25, G:0.05, T:0.39
Consensus pattern (30 bp):
AACTTTTGCAAAATTACAATTTTGCCCCCA
Found at i:47016337 original size:14 final size:14
Alignment explanation
Indices: 47016320--47016348 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
47016310 ATTGAATGAT
47016320 ATTGATTGATACCA
1 ATTGATTGATACCA
47016334 ATTGATTGATACCA
1 ATTGATTGATACCA
47016348 A
1 A
47016349 CACAATGGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (14 bp):
ATTGATTGATACCA
Found at i:47018550 original size:19 final size:19
Alignment explanation
Indices: 47018526--47018572 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
47018516 AAATACTTAT
47018526 AATTTACATAACCAAAACC
1 AATTTACATAACCAAAACC
* *
47018545 AATTTACATAACCGAAACT
1 AATTTACATAACCAAAACC
*
47018564 TATTTACAT
1 AATTTACAT
47018573 GCCACTTTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.47, C:0.21, G:0.02, T:0.30
Consensus pattern (19 bp):
AATTTACATAACCAAAACC
Found at i:47020529 original size:26 final size:26
Alignment explanation
Indices: 47020463--47020529 Score: 89
Period size: 26 Copynumber: 2.6 Consensus size: 26
47020453 GATCCTGACC
* * **
47020463 CACAGCTTGTGTGAACAGGCTCATTT
1 CACAGCTCGTGTGAGCAAACTCATTT
*
47020489 CAAAGCTCGTGTGAGCAAACTCATTT
1 CACAGCTCGTGTGAGCAAACTCATTT
47020515 CACAGCTCGTGTGAG
1 CACAGCTCGTGTGAG
47020530 GAAAAATGTA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (26 bp):
CACAGCTCGTGTGAGCAAACTCATTT
Found at i:47024762 original size:49 final size:49
Alignment explanation
Indices: 47024660--47024755 Score: 113
Period size: 49 Copynumber: 2.0 Consensus size: 49
47024650 TCTAGTTCAC
* * * * *
47024660 GTGGTTATATGGTCATGGGTTGAAGTATAAGTAGGGGTCCTAGTTGACA
1 GTGGTTATGTGGTCACGGGTTGAAGTATAAATAGGAGTCCCAGTTGACA
* *
47024709 GTGGTTATGTGGTCACGTGTTGGAGTATAAATATGGAG-CCCAGTTGA
1 GTGGTTATGTGGTCACGGGTTGAAGTATAAATA-GGAGTCCCAGTTGA
47024756 TGGTGGTATG
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
49 36 0.92
50 3 0.08
ACGTcount: A:0.24, C:0.09, G:0.34, T:0.32
Consensus pattern (49 bp):
GTGGTTATGTGGTCACGGGTTGAAGTATAAATAGGAGTCCCAGTTGACA
Found at i:47025532 original size:26 final size:26
Alignment explanation
Indices: 47025503--47025552 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
47025493 GAAATATGTG
47025503 GGTCTCCAAGAACTATTGCATCACTA
1 GGTCTCCAAGAACTATTGCATCACTA
47025529 GGTCTCCAAGAACTATTGCATCAC
1 GGTCTCCAAGAACTATTGCATCAC
47025553 CGTTAACTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (26 bp):
GGTCTCCAAGAACTATTGCATCACTA
Found at i:47031398 original size:50 final size:49
Alignment explanation
Indices: 47031268--47031406 Score: 136
Period size: 50 Copynumber: 2.8 Consensus size: 49
47031258 ACATGCCAAA
* ** * * * *
47031268 GCCATGTCCCTGACATGGTCTTACATGGGAGTTCTCATATCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTT-CATGGGACCTCTCATATAGGTGACAAC
* * *
47031318 GCCATGTCCCAGGCATTGTCTT-ATGGGGGACCTCTCATCTAGGTGACAAC
1 GCCATGTCCCAGACATGGTCTTCAT--GGGACCTCTCATATAGGTGACAAC
*
47031368 GCCATGTCCCAGACATGGTATTCCATGGGACCTCTCATA
1 GCCATGTCCCAGACATGGTCTT-CATGGGACCTCTCATA
47031407 ACCTCAATAA
Statistics
Matches: 71, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
48 2 0.03
50 67 0.94
52 2 0.03
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.27
Consensus pattern (49 bp):
GCCATGTCCCAGACATGGTCTTCATGGGACCTCTCATATAGGTGACAAC
Found at i:47035833 original size:25 final size:25
Alignment explanation
Indices: 47035799--47035848 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
47035789 GTTCATAATG
47035799 ATAACTTAACCAAATTAATCCTAAC
1 ATAACTTAACCAAATTAATCCTAAC
47035824 ATAACTTAACCAAATTAATCCTAAC
1 ATAACTTAACCAAATTAATCCTAAC
47035849 CAATCCCTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (25 bp):
ATAACTTAACCAAATTAATCCTAAC
Found at i:47035850 original size:15 final size:15
Alignment explanation
Indices: 47035805--47035851 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
47035795 AATGATAACT
47035805 TAACCAAATTAATCC
1 TAACCAAATTAATCC
*
47035820 TAA-C--A-TAA-CT
1 TAACCAAATTAATCC
47035830 TAACCAAATTAATCC
1 TAACCAAATTAATCC
47035845 TAACCAA
1 TAACCAA
47035852 TCCCTATGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 10
0.68 0.05 0.27
Matches are distributed among these distances:
10 4 0.16
11 4 0.16
12 1 0.04
13 1 0.04
14 4 0.16
15 11 0.44
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (15 bp):
TAACCAAATTAATCC
Found at i:47048189 original size:23 final size:23
Alignment explanation
Indices: 47048158--47048276 Score: 125
Period size: 23 Copynumber: 5.2 Consensus size: 23
47048148 ATAAGTGCCA
47048158 CACTAATATGTAGCCGAAGCTAC
1 CACTAATATGTAGCCGAAGCTAC
* * * *
47048181 CACTTATATGTGGCCGTAGCTAG
1 CACTAATATGTAGCCGAAGCTAC
*
47048204 CACTGAA-ATGTAGCCGAAGTTAC
1 CACT-AATATGTAGCCGAAGCTAC
* *
47048227 AACTAATATGTAGCCGTAGCTAC
1 CACTAATATGTAGCCGAAGCTAC
**
47048250 CACTTAA-ACATAGCCGAAGCTAC
1 CAC-TAATATGTAGCCGAAGCTAC
47048273 CACT
1 CACT
47048277 GATCAATAAC
Statistics
Matches: 77, Mismatches: 16, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
22 3 0.04
23 70 0.91
24 4 0.05
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (23 bp):
CACTAATATGTAGCCGAAGCTAC
Found at i:47048236 original size:46 final size:46
Alignment explanation
Indices: 47048165--47048272 Score: 144
Period size: 46 Copynumber: 2.3 Consensus size: 46
47048155 CCACACTAAT
* * * *
47048165 ATGTAGCCGAAGCTACCACTTATATGTGGCCGTAGCTAGCACTGAA
1 ATGTAGCCGAAGCTACAACTAATATGTAGCCGTAGCTACCACTGAA
* *
47048211 ATGTAGCCGAAGTTACAACTAATATGTAGCCGTAGCTACCACTTAA
1 ATGTAGCCGAAGCTACAACTAATATGTAGCCGTAGCTACCACTGAA
**
47048257 ACATAGCCGAAGCTAC
1 ATGTAGCCGAAGCTAC
47048273 CACTGATCAA
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 53 1.00
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.23
Consensus pattern (46 bp):
ATGTAGCCGAAGCTACAACTAATATGTAGCCGTAGCTACCACTGAA
Found at i:47055652 original size:30 final size:30
Alignment explanation
Indices: 47055618--47055695 Score: 138
Period size: 30 Copynumber: 2.6 Consensus size: 30
47055608 CAATAGCAGT
*
47055618 GTGTGGGCCATAGCCCAATATAGTAACAGA
1 GTGTGGGCCTTAGCCCAATATAGTAACAGA
*
47055648 GTGTGGGCCTTAGTCCAATATAGTAACAGA
1 GTGTGGGCCTTAGCCCAATATAGTAACAGA
47055678 GTGTGGGCCTTAGCCCAA
1 GTGTGGGCCTTAGCCCAA
47055696 AACAATAATC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (30 bp):
GTGTGGGCCTTAGCCCAATATAGTAACAGA
Found at i:47055809 original size:26 final size:26
Alignment explanation
Indices: 47055775--47055881 Score: 142
Period size: 26 Copynumber: 4.1 Consensus size: 26
47055765 AACACACCAA
* * *
47055775 TATCACAGCAAAGCTGCCAATATCAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
* * *
47055801 TAACGCAGCAAAGCTACTAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
* *
47055827 TATCACAGCAAAGCTGCCAGTATCAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
47055853 TATCGCAGCAAAGCTGCCAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
47055879 TAT
1 TAT
47055882 TTGTGGCAAA
Statistics
Matches: 68, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 68 1.00
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.19
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAGTAACAG
Found at i:47055837 original size:52 final size:52
Alignment explanation
Indices: 47055775--47055881 Score: 178
Period size: 52 Copynumber: 2.1 Consensus size: 52
47055765 AACACACCAA
*
47055775 TATCACAGCAAAGCTGCCAATATCAGTAACGCAGCAAAGCTACTAGTAACAG
1 TATCACAGCAAAGCTGCCAATATCAGTAACGCAGCAAAGCTACCAGTAACAG
* * *
47055827 TATCACAGCAAAGCTGCCAGTATCAGTATCGCAGCAAAGCTGCCAGTAACAG
1 TATCACAGCAAAGCTGCCAATATCAGTAACGCAGCAAAGCTACCAGTAACAG
47055879 TAT
1 TAT
47055882 TTGTGGCAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.19
Consensus pattern (52 bp):
TATCACAGCAAAGCTGCCAATATCAGTAACGCAGCAAAGCTACCAGTAACAG
Found at i:47056206 original size:80 final size:81
Alignment explanation
Indices: 47056088--47056243 Score: 215
Period size: 80 Copynumber: 1.9 Consensus size: 81
47056078 TACCTCTCGG
* * * *
47056088 GGGTATTTCGATAATTTTAACCTTCGAGGGTATTTCGATAGTATTACCTTTCGAGGGTATTTTGA
1 GGGTATTTCGATAATTTTAACCTTCGAAGATATTTCGATAATATTACCCTTCGAGGGTATTTTGA
47056153 TAATTTAACCCTTCGA
66 TAATTTAACCCTTCGA
* * * * *
47056169 GGGT-TTTCGGTAATTTTATCCTTTGAAGATATTTCGATAATTTTACCCTTCGAGGGTATTTTGG
1 GGGTATTTCGATAATTTTAACCTTCGAAGATATTTCGATAATATTACCCTTCGAGGGTATTTTGA
*
47056233 TAATTTTACCC
66 TAATTTAACCC
47056244 ACGAATCGCA
Statistics
Matches: 65, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
80 61 0.94
81 4 0.06
ACGTcount: A:0.23, C:0.15, G:0.19, T:0.43
Consensus pattern (81 bp):
GGGTATTTCGATAATTTTAACCTTCGAAGATATTTCGATAATATTACCCTTCGAGGGTATTTTGA
TAATTTAACCCTTCGA
Found at i:47056243 original size:27 final size:27
Alignment explanation
Indices: 47056074--47056243 Score: 191
Period size: 27 Copynumber: 6.3 Consensus size: 27
47056064 TATAATGGTC
*
47056074 ATTTTA-CCTCTCGGGGGTATTTCGATA
1 ATTTTACCCT-TCGAGGGTATTTCGATA
*
47056101 ATTTTAACCTTCGAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* * * *
47056128 GTATTACCTTTCGAGGGTATTTTGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
47056155 ATTTAACCCTTCGAGGGT-TTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* * * *
47056181 ATTTTATCCTTTGAAGATATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
47056208 ATTTTACCCTTCGAGGGTATTTTGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
47056235 ATTTTACCC
1 ATTTTACCC
47056244 ACGAATCGCA
Statistics
Matches: 117, Mismatches: 24, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
26 19 0.16
27 95 0.81
28 3 0.03
ACGTcount: A:0.22, C:0.16, G:0.19, T:0.43
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGATA
Found at i:47057337 original size:36 final size:36
Alignment explanation
Indices: 47057264--47057339 Score: 93
Period size: 36 Copynumber: 2.1 Consensus size: 36
47057254 CTCCCACAAA
**
47057264 CTCCTTGATTTTCTCCTAAAATCCCTTCCCTTATCC
1 CTCCTTGATTTTCTCCTAAAATCCCTTCCCCAATCC
*
47057300 CTCCTTGATTTTCTCCATCAAAT-CC-TCCCCAACTCC
1 CTCCTTGATTTTCTCC-TAAAATCCCTTCCCCAA-TCC
47057336 CTCC
1 CTCC
47057340 ATGACCAGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
35 5 0.14
36 25 0.71
37 5 0.14
ACGTcount: A:0.17, C:0.43, G:0.03, T:0.37
Consensus pattern (36 bp):
CTCCTTGATTTTCTCCTAAAATCCCTTCCCCAATCC
Found at i:47060214 original size:16 final size:15
Alignment explanation
Indices: 47060187--47060220 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
47060177 ATAACTAGTA
*
47060187 TATAATTATATTTAT
1 TATAATTATATTAAT
47060202 TATAATATATATTAAT
1 TATAAT-TATATTAAT
47060218 TAT
1 TAT
47060221 TATCAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATAATTATATTAAT
Found at i:47063975 original size:27 final size:26
Alignment explanation
Indices: 47063945--47064028 Score: 80
Period size: 27 Copynumber: 3.2 Consensus size: 26
47063935 TATCCTATAG
*
47063945 GGGTATTTTGGTCATTTTACCCTTCGA
1 GGGTATTTTAGT-ATTTTACCCTTCGA
* * **
47063972 GGGTATTTCAATAATTTTACCCTTTTA
1 GGGTATTTTAGT-ATTTTACCCTTCGA
* *
47063999 AGGTATTTTAG-ATTTTACCCTTCGG
1 GGGTATTTTAGTATTTTACCCTTCGA
47064024 GGGTA
1 GGGTA
47064029 ATTCGATCAT
Statistics
Matches: 44, Mismatches: 13, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
25 15 0.34
27 29 0.66
ACGTcount: A:0.20, C:0.15, G:0.20, T:0.44
Consensus pattern (26 bp):
GGGTATTTTAGTATTTTACCCTTCGA
Found at i:47064281 original size:18 final size:17
Alignment explanation
Indices: 47064249--47064282 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
47064239 TACTCGCATA
*
47064249 GGGCCCACGGGCCCATT
1 GGGCCCACCGGCCCATT
47064266 GGGCCCACTCGGCCCAT
1 GGGCCCAC-CGGCCCAT
47064283 ACTGGTCCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.12, C:0.44, G:0.32, T:0.12
Consensus pattern (17 bp):
GGGCCCACCGGCCCATT
Found at i:47065187 original size:41 final size:41
Alignment explanation
Indices: 47065141--47065222 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
47065131 TAAATGTTAG
47065141 TTTCGGCCAAGAAGAGAGAAAGTGAATGGAAAAGATGCAGA
1 TTTCGGCCAAGAAGAGAGAAAGTGAATGGAAAAGATGCAGA
47065182 TTTCGGCCAAGAAGAGAGAAAGTGAATGGAAAAGATGCAGA
1 TTTCGGCCAAGAAGAGAGAAAGTGAATGGAAAAGATGCAGA
47065223 AAAAAATGAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.44, C:0.10, G:0.32, T:0.15
Consensus pattern (41 bp):
TTTCGGCCAAGAAGAGAGAAAGTGAATGGAAAAGATGCAGA
Found at i:47065619 original size:25 final size:25
Alignment explanation
Indices: 47065582--47065635 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
47065572 TGAACCTCTG
* * *
47065582 ACCTTCTTACCACACTTGTGACGCC
1 ACCTCCTTACCACACCTATGACGCC
* *
47065607 ACCTCCTTGCCACACCTATGTCGCC
1 ACCTCCTTACCACACCTATGACGCC
47065632 ACCT
1 ACCT
47065636 TGCCACTACA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.19, C:0.44, G:0.11, T:0.26
Consensus pattern (25 bp):
ACCTCCTTACCACACCTATGACGCC
Found at i:47074446 original size:12 final size:12
Alignment explanation
Indices: 47074429--47074453 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
47074419 GTGGATTTAG
47074429 TGGGGAGTTTCA
1 TGGGGAGTTTCA
47074441 TGGGGAGTTTCA
1 TGGGGAGTTTCA
47074453 T
1 T
47074454 ATTTTTGCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.40, T:0.36
Consensus pattern (12 bp):
TGGGGAGTTTCA
Found at i:47078138 original size:40 final size:40
Alignment explanation
Indices: 47078094--47078279 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
47078084 GCTCCTTGTT
* *
47078094 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
47078134 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
47078174 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
47078214 CAAATGCCTTC-GGATCTTAGTCCGAATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
47078255 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47078280 CATCATTCAA
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.02
40 114 0.88
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:47086004 original size:40 final size:40
Alignment explanation
Indices: 47085960--47086145 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
47085950 GCTCCTCGTT
*
47085960 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
47086000 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
47086040 CAAATGCCTTCGGGAGTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
47086080 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
47086121 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47086146 CATCATTCAA
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 115 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:47114722 original size:13 final size:13
Alignment explanation
Indices: 47114706--47114734 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
47114696 GTTAAAAAGG
47114706 GTATGCAAAATGT
1 GTATGCAAAATGT
47114719 GTATGCAAAATGT
1 GTATGCAAAATGT
47114732 GTA
1 GTA
47114735 AATTTTCGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (13 bp):
GTATGCAAAATGT
Found at i:47116827 original size:6 final size:6
Alignment explanation
Indices: 47116819--47116853 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
47116809 GTGTCAGCAT
*
47116819 TTACAT TTACAA TTACAA TTACAA TTACAA TTACA
1 TTACAA TTACAA TTACAA TTACAA TTACAA TTACA
47116854 GACACACTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.46, C:0.17, G:0.00, T:0.37
Consensus pattern (6 bp):
TTACAA
Found at i:47118888 original size:43 final size:43
Alignment explanation
Indices: 47118734--47118890 Score: 165
Period size: 43 Copynumber: 3.6 Consensus size: 43
47118724 AGTATGTACA
* * * *
47118734 ATTCGAAAATAGGGTCACAC-GCCCGTGCCACCAAACCATGTGCA
1 ATTCG-AAATAGGGTCACACAG-TCGTGTCGCCAAACCATGTGCC
* * **
47118778 ACTT-GAAATAGGATCACACAGTCATGTCGCCAAACTGTGTGCC
1 A-TTCGAAATAGGGTCACACAGTCGTGTCGCCAAACCATGTGCC
*
47118821 ATTCGAAATAGGGTCACACGGTCGTGTCGCCAAACCATGTGCC
1 ATTCGAAATAGGGTCACACAGTCGTGTCGCCAAACCATGTGCC
* **
47118864 ATTCAAAATAGGGTCACATTGTCGTGT
1 ATTCGAAATAGGGTCACACAGTCGTGT
47118891 AACAACAGGT
Statistics
Matches: 94, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
42 2 0.02
43 87 0.93
44 3 0.03
45 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.22
Consensus pattern (43 bp):
ATTCGAAATAGGGTCACACAGTCGTGTCGCCAAACCATGTGCC
Found at i:47125948 original size:23 final size:23
Alignment explanation
Indices: 47125919--47125966 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
47125909 ACTTTTCATA
47125919 TTCACTCTTCATACTCAAGTCTC
1 TTCACTCTTCATACTCAAGTCTC
*
47125942 TTCACTCTTCATATTCAAGTCTC
1 TTCACTCTTCATACTCAAGTCTC
47125965 TT
1 TT
47125967 TACATTTCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.21, C:0.31, G:0.04, T:0.44
Consensus pattern (23 bp):
TTCACTCTTCATACTCAAGTCTC
Found at i:47127096 original size:21 final size:20
Alignment explanation
Indices: 47127070--47127114 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
47127060 AGGATGATTG
47127070 CTTCAACCCGTACAAAGTTTT
1 CTTCAACCCGTA-AAAGTTTT
** *
47127091 CTTCAACTTGTAAAATTTTT
1 CTTCAACCCGTAAAAGTTTT
47127111 CTTC
1 CTTC
47127115 TTCTCCTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.27, C:0.24, G:0.07, T:0.42
Consensus pattern (20 bp):
CTTCAACCCGTAAAAGTTTT
Found at i:47130104 original size:15 final size:17
Alignment explanation
Indices: 47130086--47130118 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
47130076 AAACAAAGAA
47130086 AATGAAAA-AG-AATAT
1 AATGAAAAGAGAAATAT
47130101 AATGAAAAGAGAAATAT
1 AATGAAAAGAGAAATAT
47130118 A
1 A
47130119 TTTTTTTAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 2 0.12
17 6 0.38
ACGTcount: A:0.67, C:0.00, G:0.15, T:0.18
Consensus pattern (17 bp):
AATGAAAAGAGAAATAT
Found at i:47133432 original size:18 final size:19
Alignment explanation
Indices: 47133409--47133445 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
47133399 ATTATTCTAG
47133409 AAAATTT-TTCATTTTTTT
1 AAAATTTATTCATTTTTTT
*
47133427 AAAATTTATTTATTTTTTT
1 AAAATTTATTCATTTTTTT
47133446 GAATTTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68
Consensus pattern (19 bp):
AAAATTTATTCATTTTTTT
Found at i:47133453 original size:10 final size:10
Alignment explanation
Indices: 47133438--47133508 Score: 56
Period size: 10 Copynumber: 7.0 Consensus size: 10
47133428 AAATTTATTT
47133438 ATTTTTTTGA
1 ATTTTTTTGA
47133448 ATTTTTTAT-A
1 ATTTTTT-TGA
47133458 ATTTTTTTGA
1 ATTTTTTTGA
***
47133468 A-TTTTAAAA
1 ATTTTTTTGA
*
47133477 ATTATTTTGA
1 ATTTTTTTGA
*
47133487 ATTATTTTGTA
1 ATTTTTTTG-A
47133498 ATTTTTATTGA
1 ATTTTT-TTGA
47133509 GAGAGACCAA
Statistics
Matches: 48, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
9 7 0.15
10 30 0.62
11 8 0.17
12 3 0.06
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (10 bp):
ATTTTTTTGA
Found at i:47133462 original size:19 final size:19
Alignment explanation
Indices: 47133440--47133503 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
47133430 ATTTATTTAT
47133440 TTTTTTGAATTTTTTATAA
1 TTTTTTGAATTTTTTATAA
* *
47133459 TTTTTTTGAA-TTTTAAAAA
1 -TTTTTTGAATTTTTTATAA
*
47133478 TTATTTTGAATTATTTTGTAA
1 TT-TTTTGAATT-TTTTATAA
47133499 TTTTT
1 TTTTT
47133504 ATTGAGAGAG
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
18 2 0.06
19 14 0.39
20 13 0.36
21 7 0.19
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (19 bp):
TTTTTTGAATTTTTTATAA
Found at i:47134870 original size:19 final size:19
Alignment explanation
Indices: 47134838--47134874 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
47134828 TTTTTAATAT
47134838 TTTCCCTCCAAACTATTTAC
1 TTTCCCTCCAAACT-TTTAC
47134858 TTTCCCT-CAAACTTTTA
1 TTTCCCTCCAAACTTTTA
47134875 TTCTCCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 6 0.35
20 7 0.41
ACGTcount: A:0.24, C:0.32, G:0.00, T:0.43
Consensus pattern (19 bp):
TTTCCCTCCAAACTTTTAC
Found at i:47135536 original size:5 final size:5
Alignment explanation
Indices: 47135526--47135551 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
47135516 CTCGAAAATT
47135526 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
47135552 CGAATTCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:47139968 original size:15 final size:15
Alignment explanation
Indices: 47139948--47139976 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
47139938 CATGTAGAAA
47139948 TTAAATTAAACTAAG
1 TTAAATTAAACTAAG
47139963 TTAAATTAAACTAA
1 TTAAATTAAACTAA
47139977 TGTAATTAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.07, G:0.03, T:0.34
Consensus pattern (15 bp):
TTAAATTAAACTAAG
Found at i:47141205 original size:42 final size:41
Alignment explanation
Indices: 47141159--47141239 Score: 126
Period size: 42 Copynumber: 2.0 Consensus size: 41
47141149 ATGGTAAATC
* *
47141159 CAACAACCCATGTTTATCTTCTCCTCTTTTTAAATTCTTTAT
1 CAACAACCCAAGATTATCTTCTCCT-TTTTTAAATTCTTTAT
*
47141201 CAACAACTCAAGATTATCTTCTCCTTTTTTAAATTCTTT
1 CAACAACCCAAGATTATCTTCTCCTTTTTTAAATTCTTT
47141240 TTTTCTAGGA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
41 14 0.39
42 22 0.61
ACGTcount: A:0.26, C:0.25, G:0.02, T:0.47
Consensus pattern (41 bp):
CAACAACCCAAGATTATCTTCTCCTTTTTTAAATTCTTTAT
Found at i:47142822 original size:4 final size:4
Alignment explanation
Indices: 47142813--47142849 Score: 65
Period size: 4 Copynumber: 9.2 Consensus size: 4
47142803 CAATTTCAAC
*
47142813 CATT CATT CATT CATT CATT CATT CATT CACT CATT C
1 CATT CATT CATT CATT CATT CATT CATT CATT CATT C
47142850 GCTCATTTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.24, C:0.30, G:0.00, T:0.46
Consensus pattern (4 bp):
CATT
Found at i:47142854 original size:8 final size:8
Alignment explanation
Indices: 47142813--47142856 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
47142803 CAATTTCAAC
*
47142813 CATTCATT
1 CATTCACT
*
47142821 CATTCATT
1 CATTCACT
*
47142829 CATTCATT
1 CATTCACT
47142837 CATTCACT
1 CATTCACT
*
47142845 CATTCGCT
1 CATTCACT
47142853 CATT
1 CATT
47142857 TGTTTATTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 34 1.00
ACGTcount: A:0.23, C:0.30, G:0.02, T:0.45
Consensus pattern (8 bp):
CATTCACT
Found at i:47152188 original size:144 final size:146
Alignment explanation
Indices: 47151895--47152190 Score: 436
Period size: 146 Copynumber: 2.0 Consensus size: 146
47151885 AAAACTTTTG
* *
47151895 TTTTTTTAAAAAAGGAGAGTTTTGATTTTTAAAATAAAAATCTATTTTTTAGTCACTTTAAAGGA
1 TTTTTTTAAAAAAGGAGAGTTTAGATTTTTAAAATAAAAATATATTTTTTAGTCACTTTAAAGGA
*
47151960 AAGATTAAAATTTTAAAATAAAGTTTTGAGTTTTTTCAACTATTTCGAAATAAAATTTTTGATCT
66 AAGATTAAAATTTTAAAATAAAGTTTTGAG-TTTTTCAACTATTTCGAAATAAAAGTTTTGATCT
*
47152025 TTCTGAAAAGTAGTGAT
130 TTATGAAAAGTAGTGAT
* ** * * *
47152042 TTTTTTTAAAAGA-GA-AGTTTAGATTTTTAAAAATGTAAATATGTTTTTTAGTCATTTTAAATG
1 TTTTTTTAAAAAAGGAGAGTTTAGATTTTT-AAAATAAAAATATATTTTTTAGTCACTTTAAAGG
* * *
47152105 AAAGTTTAAAATTTTTAAATAAATTTTTGA-TTTTTCAACTATTTCGAAATAAAAGTTTTGATCT
65 AAAGATTAAAATTTTAAAATAAAGTTTTGAGTTTTTCAACTATTTCGAAATAAAAGTTTTGATCT
47152169 TTATGAAAAGTAGTGAT
130 TTATGAAAAGTAGTGAT
47152186 TTTTT
1 TTTTT
47152191 AAAAGAAAAA
Statistics
Matches: 135, Mismatches: 13, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
144 54 0.40
145 12 0.09
146 57 0.42
147 12 0.09
ACGTcount: A:0.38, C:0.04, G:0.12, T:0.46
Consensus pattern (146 bp):
TTTTTTTAAAAAAGGAGAGTTTAGATTTTTAAAATAAAAATATATTTTTTAGTCACTTTAAAGGA
AAGATTAAAATTTTAAAATAAAGTTTTGAGTTTTTCAACTATTTCGAAATAAAAGTTTTGATCTT
TATGAAAAGTAGTGAT
Found at i:47153525 original size:27 final size:27
Alignment explanation
Indices: 47153477--47153961 Score: 175
Period size: 27 Copynumber: 18.1 Consensus size: 27
47153467 TCGATATCTG
* *
47153477 GACCGAAATACCCCCAAAGGGTAAAAT
1 GACCGAAATACCCCCGATGGGTAAAAT
* *
47153504 GACCGAAATATCCTCGATGGGTAAAAT
1 GACCGAAATACCCCCGATGGGTAAAAT
* * *
47153531 GACCAAAATACCCTCGATGCGTAAAAT
1 GACCGAAATACCCCCGATGGGTAAAAT
* * *
47153558 -AACTAAAAAGCCCCC-ATAGGGTAAAAT
1 GACCGAAATA-CCCCCGAT-GGGTAAAAT
*
47153585 GACCGAAATACCCCCG-TAGGGTAGAAT
1 GACCGAAATACCCCCGAT-GGGTAAAAT
* *
47153612 -ACCAAAACACCCCC-ATAGGGTAAAAT
1 GACCGAAATACCCCCGAT-GGGTAAAAT
* * * * *
47153638 CATCGTAATACCCCTG-TAGGGCAAAAT
1 GACCGAAATACCCCCGAT-GGGTAAAAT
* * *
47153665 GACCGTAATACCTCTG-TAGGGTAAAAT
1 GACCGAAATACCCCCGAT-GGGTAAAAT
* *
47153692 GACC-ATAAT-GCCCCTATAGGGTAAAAT
1 GACCGA-AATACCCCCGAT-GGGTAAAAT
** *
47153719 GACCTTAATA-TCCC-ATAGGGTAAAAT
1 GACCGAAATACCCCCGAT-GGGTAAAAT
* * **
47153745 GACTGTAATACCCTTG-TGGGTAAAAT
1 GACCGAAATACCCCCGATGGGTAAAAT
* * * * *
47153771 AACTGTAAT-GCCCTG-TAGGGTAAAAT
1 GACCGAAATACCCCCGAT-GGGTAAAAT
* * *
47153797 GACCGTAATACCCCTG-TAGGATAAAAT
1 GACCGAAATACCCCCGAT-GGGTAAAAT
* * * **
47153824 AACCGTAATGCCCTTG-TAGGGTAAAAT
1 GACCGAAATACCCCCGAT-GGGTAAAAT
* * *
47153851 AACC-ATAATGCCCCTG-TAGGGTAAAAT
1 GACCGA-AATACCCCCGAT-GGGTAAAAT
* * *
47153878 GATCGTAATA-CCCCTATAGGGTAAAAT
1 GACCGAAATACCCCCGAT-GGGTAAAAT
* * **
47153905 GACCGTAAT-GCCCTTATAGGGTAAAAT
1 GACCGAAATACCCCCGAT-GGGTAAAAT
* *
47153932 GACCGTAATA-CCCCTATAGGGTAAAAT
1 GACCGAAATACCCCCGAT-GGGTAAAAT
47153959 GAC
1 GAC
47153962 ATTAATGCCC
Statistics
Matches: 375, Mismatches: 63, Indels: 40
0.78 0.13 0.08
Matches are distributed among these distances:
25 5 0.01
26 88 0.23
27 276 0.74
28 6 0.02
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (27 bp):
GACCGAAATACCCCCGATGGGTAAAAT
Found at i:47153967 original size:27 final size:27
Alignment explanation
Indices: 47153574--47153961 Score: 424
Period size: 27 Copynumber: 14.5 Consensus size: 27
47153564 AAAGCCCCCA
* *
47153574 TAGGGTAAAATGACCGAAATACCCCCG
1 TAGGGTAAAATGACCGTAATACCCCTG
* ** * **
47153601 TAGGGTAGAAT-ACCAAAACACCCCCA
1 TAGGGTAAAATGACCGTAATACCCCTG
* *
47153627 TAGGGTAAAATCATCGTAATACCCCTG
1 TAGGGTAAAATGACCGTAATACCCCTG
* *
47153654 TAGGGCAAAATGACCGTAATACCTCTG
1 TAGGGTAAAATGACCGTAATACCCCTG
* * *
47153681 TAGGGTAAAATGACCATAATGCCCCTA
1 TAGGGTAAAATGACCGTAATACCCCTG
* * *
47153708 TAGGGTAAAATGACCTTAATATCCC-A
1 TAGGGTAAAATGACCGTAATACCCCTG
* *
47153734 TAGGGTAAAATGACTGTAATACCCTTG
1 TAGGGTAAAATGACCGTAATACCCCTG
* * *
47153761 T-GGGTAAAATAACTGTAAT-GCCCTG
1 TAGGGTAAAATGACCGTAATACCCCTG
47153786 TAGGGTAAAATGACCGTAATACCCCTG
1 TAGGGTAAAATGACCGTAATACCCCTG
* * * *
47153813 TAGGATAAAATAACCGTAATGCCCTTG
1 TAGGGTAAAATGACCGTAATACCCCTG
* * *
47153840 TAGGGTAAAATAACCATAATGCCCCTG
1 TAGGGTAAAATGACCGTAATACCCCTG
* *
47153867 TAGGGTAAAATGATCGTAATACCCCTA
1 TAGGGTAAAATGACCGTAATACCCCTG
* * *
47153894 TAGGGTAAAATGACCGTAATGCCCTTA
1 TAGGGTAAAATGACCGTAATACCCCTG
*
47153921 TAGGGTAAAATGACCGTAATACCCCTA
1 TAGGGTAAAATGACCGTAATACCCCTG
47153948 TAGGGTAAAATGAC
1 TAGGGTAAAATGAC
47153962 ATTAATGCCC
Statistics
Matches: 306, Mismatches: 51, Indels: 8
0.84 0.14 0.02
Matches are distributed among these distances:
25 5 0.02
26 77 0.25
27 224 0.73
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.23
Consensus pattern (27 bp):
TAGGGTAAAATGACCGTAATACCCCTG
Found at i:47154185 original size:27 final size:27
Alignment explanation
Indices: 47154128--47154188 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
47154118 GGAAATTTTG
* *
47154128 TTACTAGTGGCTCTGCCACAATCACTG
1 TTACTGGTGGCTCTGCCACAATCACTA
47154155 TTACTGGTGGCT-TGGCCACATAT-ACTA
1 TTACTGGTGGCTCT-GCCACA-ATCACTA
47154182 TTACTGG
1 TTACTGG
47154189 AAATTTTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 1 0.03
27 27 0.90
28 2 0.07
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (27 bp):
TTACTGGTGGCTCTGCCACAATCACTA
Found at i:47154276 original size:32 final size:33
Alignment explanation
Indices: 47154232--47154416 Score: 162
Period size: 32 Copynumber: 5.7 Consensus size: 33
47154222 GCTGAGATGC
47154232 TACTGATGGCTTTGTGCCGATCATAGT-ACCGT
1 TACTGATGGCTTTGTGCCGATCATAGTCACCGT
* * * **
47154264 TATTGATGGCTTTGTACCGATCATATTTCATTGT
1 TACTGATGGCTTTGTGCCGATCATA-GTCACCGT
* * * *
47154298 TACTGATGGCTGTGTGTCGATCATA-TCACTGC
1 TACTGATGGCTTTGTGCCGATCATAGTCACCGT
* * *
47154330 TACTGATGGCTTTGTACCAATCAT-GTTACCGT
1 TACTGATGGCTTTGTGCCGATCATAGTCACCGT
* * ** *
47154362 TACTGATGGCTGTGTGCTGATCATA-TCATTGC
1 TACTGATGGCTTTGTGCCGATCATAGTCACCGT
* *
47154394 TACTGATGGATTTGTGCCTATCA
1 TACTGATGGCTTTGTGCCGATCA
47154417 CATTACTATA
Statistics
Matches: 119, Mismatches: 30, Indels: 8
0.76 0.19 0.05
Matches are distributed among these distances:
32 94 0.79
33 1 0.01
34 24 0.20
ACGTcount: A:0.20, C:0.19, G:0.22, T:0.38
Consensus pattern (33 bp):
TACTGATGGCTTTGTGCCGATCATAGTCACCGT
Found at i:47154338 original size:66 final size:63
Alignment explanation
Indices: 47154232--47154408 Score: 203
Period size: 66 Copynumber: 2.7 Consensus size: 63
47154222 GCTGAGATGC
* * * * * * **
47154232 TACTGATGGCTTTGTGCCGATCATAGT-ACCGTTATTGATGGCTTTGTACCGATCATATTTCATT
1 TACTGATGGCTGTGTG-CGATCATA-TCACTGCTACTGATGGCTTTGTACCAATCAT-GTT-ACC
47154296 GT
62 GT
47154298 TACTGATGGCTGTGTGTCGATCATATCACTGCTACTGATGGCTTTGTACCAATCATGTTACCGT
1 TACTGATGGCTGTGTG-CGATCATATCACTGCTACTGATGGCTTTGTACCAATCATGTTACCGT
* *
47154362 TACTGATGGCTGTGTGCTGATCATATCATTGCTACTGATGGATTTGT
1 TACTGATGGCTGTGTGC-GATCATATCACTGCTACTGATGGCTTTGT
47154409 GCCTATCACA
Statistics
Matches: 98, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
63 1 0.01
64 46 0.47
65 3 0.03
66 48 0.49
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.39
Consensus pattern (63 bp):
TACTGATGGCTGTGTGCGATCATATCACTGCTACTGATGGCTTTGTACCAATCATGTTACCGT
Found at i:47159685 original size:93 final size:93
Alignment explanation
Indices: 47159521--47159710 Score: 344
Period size: 93 Copynumber: 2.0 Consensus size: 93
47159511 TTGATGTTGT
**
47159521 GTTTTAGAGTTTGAAGGTAATTGGGAGAGATTTCTACCATACAAAGCCTTATATGGTTGAAAATA
1 GTTTTAGAGTTTGAAGGTAATTGGGAGAGATTTCTACCATACAAAGCCTTATACAGTTGAAAATA
*
47159586 TTAGGCGAGCATGAAAATGAGTTTTAGA
66 TCAGGCGAGCATGAAAATGAGTTTTAGA
*
47159614 GTTTTAGAGTTTGAAGGTAATTGGGAGAGATTTCTACCATACAAAGCTTTATACAGTTGAAAATA
1 GTTTTAGAGTTTGAAGGTAATTGGGAGAGATTTCTACCATACAAAGCCTTATACAGTTGAAAATA
47159679 TCAGGCGAGCATGAAAATGAGTTTTAGA
66 TCAGGCGAGCATGAAAATGAGTTTTAGA
47159707 GTTT
1 GTTT
47159711 GAAGGTAATT
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 93 1.00
ACGTcount: A:0.34, C:0.09, G:0.24, T:0.33
Consensus pattern (93 bp):
GTTTTAGAGTTTGAAGGTAATTGGGAGAGATTTCTACCATACAAAGCCTTATACAGTTGAAAATA
TCAGGCGAGCATGAAAATGAGTTTTAGA
Found at i:47162264 original size:35 final size:35
Alignment explanation
Indices: 47162209--47162278 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
47162199 GCTCCATATA
* *
47162209 TATATATTTAACAACCGCATATCACC-ATGTGCATT
1 TATAAATTCAACAACCGCATAT-ACCAATGTGCATT
47162244 TATAAATTCAACAACCGCATATACCTAATGTGCAT
1 TATAAATTCAACAACCGCATATACC-AATGTGCAT
47162279 ATGCCTTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
34 3 0.10
35 20 0.65
36 8 0.26
ACGTcount: A:0.37, C:0.23, G:0.09, T:0.31
Consensus pattern (35 bp):
TATAAATTCAACAACCGCATATACCAATGTGCATT
Found at i:47162556 original size:41 final size:41
Alignment explanation
Indices: 47162500--47162612 Score: 122
Period size: 41 Copynumber: 2.8 Consensus size: 41
47162490 TGATTCGATA
* * *
47162500 CACCGGCTTTTAGCCTGCTAGACCTATAGTCCGAAATGT-A-T
1 CACCGGCATTAAGCCTGCTAGACCTAAAGTCCG-AAT-TAATT
* *
47162541 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATTAATT
1 CACCGGCATTAAGCCTGCTAGACCTAAAGTCCGAATTAATT
* * *
47162582 CACCGGCATCAACCCTGCTAGACGTAAAGTC
1 CACCGGCATTAAGCCTGCTAGACCTAAAGTC
47162613 TGTATTACAT
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
39 1 0.02
40 4 0.06
41 58 0.92
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (41 bp):
CACCGGCATTAAGCCTGCTAGACCTAAAGTCCGAATTAATT
Found at i:47162613 original size:41 final size:42
Alignment explanation
Indices: 47162540--47162624 Score: 136
Period size: 41 Copynumber: 2.0 Consensus size: 42
47162530 CCGAAATGTA
* *
47162540 TCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATTA-AT
1 TCACCGGCATCAACCCTGCTAGACGTAAAGTCTGAATTACAT
*
47162581 TCACCGGCATCAACCCTGCTAGACGTAAAGTCTGTATTACAT
1 TCACCGGCATCAACCCTGCTAGACGTAAAGTCTGAATTACAT
47162623 TC
1 TC
47162625 GATCACTTTA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
41 36 0.90
42 4 0.10
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (42 bp):
TCACCGGCATCAACCCTGCTAGACGTAAAGTCTGAATTACAT
Found at i:47164307 original size:13 final size:13
Alignment explanation
Indices: 47164289--47164313 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47164279 CAATCACATG
47164289 CACACAAAATAAA
1 CACACAAAATAAA
47164302 CACACAAAATAA
1 CACACAAAATAA
47164314 TATTAATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:47170218 original size:41 final size:41
Alignment explanation
Indices: 47170162--47170274 Score: 122
Period size: 41 Copynumber: 2.8 Consensus size: 41
47170152 TGATTCGATA
* * *
47170162 CACCGGCTTTTAGCCTGCTAGACCTATAGTCCGAAATGT-A-T
1 CACCGGCATTAAGCCTGCTAGACCTAAAGTCCG-AAT-TAATT
* *
47170203 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATTAATT
1 CACCGGCATTAAGCCTGCTAGACCTAAAGTCCGAATTAATT
* * *
47170244 CACCGGCATCAACCCTGCTAGACGTAAAGTC
1 CACCGGCATTAAGCCTGCTAGACCTAAAGTC
47170275 TGTATTACAT
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
39 1 0.02
40 4 0.06
41 58 0.92
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (41 bp):
CACCGGCATTAAGCCTGCTAGACCTAAAGTCCGAATTAATT
Found at i:47170275 original size:41 final size:42
Alignment explanation
Indices: 47170202--47170286 Score: 136
Period size: 41 Copynumber: 2.0 Consensus size: 42
47170192 CCGAAATGTA
* *
47170202 TCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATTA-AT
1 TCACCGGCATCAACCCTGCTAGACGTAAAGTCTGAATTACAT
*
47170243 TCACCGGCATCAACCCTGCTAGACGTAAAGTCTGTATTACAT
1 TCACCGGCATCAACCCTGCTAGACGTAAAGTCTGAATTACAT
47170285 TC
1 TC
47170287 GATCACTTTA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
41 36 0.90
42 4 0.10
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (42 bp):
TCACCGGCATCAACCCTGCTAGACGTAAAGTCTGAATTACAT
Found at i:47171973 original size:13 final size:13
Alignment explanation
Indices: 47171955--47171979 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47171945 CAATCACATG
47171955 CACACAAAATAAA
1 CACACAAAATAAA
47171968 CACACAAAATAA
1 CACACAAAATAA
47171980 TATTAATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:47202004 original size:70 final size:70
Alignment explanation
Indices: 47201580--47202005 Score: 311
Period size: 70 Copynumber: 6.1 Consensus size: 70
47201570 GTAATAATCT
* * * * * * * * * * * *
47201580 TTTTATGCCCAACGCTAGTTGGATAGACCAACAAATAGTGTGCCCAACAATAGTTGAACAATAGA
1 TTTTGTGCCCAGCGCTAGTCGAATAAACCGACGAATAGTGTGCCCAGCACTAGTCGAATAATCGA
* **
47201645 CAACA
66 AAATG
* * * * * * * * * *
47201650 TTTTGTGCCCACCGCTAATTGGATAAACCGTCGAATAGTATGTCTC-GCAGTAGCCGAAAAATCG
1 TTTTGTGCCCAGCGCTAGTCGAATAAACCGACGAATAGTGTG-CCCAGCACTAGTCGAATAATCG
*
47201714 ATAATG
65 AAAATG
* * * *
47201720 TTTTGTGCCCAACGCTAGTCGAAAAAACCGACTAATAGTGTGCCCAGCACTAGTCGAATAATTGA
1 TTTTGTGCCCAGCGCTAGTCGAATAAACCGACGAATAGTGTGCCCAGCACTAGTCGAATAATCGA
47201785 AAATG
66 AAATG
** * * * * *
47201790 TTTTGCACCCAGCGCTAGTCAAATAAAACGACGAATACTGTGCCTAGCACTAGTCGAATAACCGA
1 TTTTGTGCCCAGCGCTAGTCGAATAAACCGACGAATAGTGTGCCCAGCACTAGTCGAATAATCGA
*
47201855 CAATG
66 AAATG
* * * * *
47201860 -TTTG-GCACCTAGTGCTAGTCGGATCAACCGACAAATAGTGTGCCCCA-CACTAGTGGAATAAT
1 TTTTGTGC-CC-AGCGCTAGTCGAATAAACCGACGAATAGTGTG-CCCAGCACTAGTCGAATAAT
* *
47201922 TGACAATG
63 CGAAAATG
* * * * * * *
47201930 TTTTGTGCGCAGCGTTAGTCGGATAAACCGATGAATAGTGTGACCAGCACTAGTCGAATTATCAA
1 TTTTGTGCCCAGCGCTAGTCGAATAAACCGACGAATAGTGTGCCCAGCACTAGTCGAATAATCGA
*
47201995 AAATA
66 AAATG
47202000 TTTTGT
1 TTTTGT
47202006 TCTAGTGCTA
Statistics
Matches: 279, Mismatches: 69, Indels: 16
0.77 0.19 0.04
Matches are distributed among these distances:
68 1 0.00
69 11 0.04
70 255 0.91
71 10 0.04
72 2 0.01
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.25
Consensus pattern (70 bp):
TTTTGTGCCCAGCGCTAGTCGAATAAACCGACGAATAGTGTGCCCAGCACTAGTCGAATAATCGA
AAATG
Found at i:47202083 original size:20 final size:20
Alignment explanation
Indices: 47202058--47202112 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
47202048 GCAAATCCAT
47202058 AATATCACATTTCATAATTC
1 AATATCACATTTCATAATTC
* *
47202078 AATATCATATTTCATAATTG
1 AATATCACATTTCATAATTC
47202098 AATATCACATATTCA
1 AATATCACAT-TTCA
47202113 CTTCAATTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
20 27 0.87
21 4 0.13
ACGTcount: A:0.42, C:0.16, G:0.02, T:0.40
Consensus pattern (20 bp):
AATATCACATTTCATAATTC
Found at i:47207252 original size:27 final size:27
Alignment explanation
Indices: 47206843--47207245 Score: 359
Period size: 27 Copynumber: 14.9 Consensus size: 27
47206833 TATTTGGACT
*
47206843 GAAATACCCCCGAAGGGTAAAATGACC
1 GAAATACCCTCGAAGGGTAAAATGACC
*
47206870 GAAATACCC-CTGATGGGTAAAATGACC
1 GAAATACCCTC-GAAGGGTAAAATGACC
* * * *
47206897 AAAATACTCTCGAAAGGTAAAATGATC
1 GAAATACCCTCGAAGGGTAAAATGACC
* *
47206924 GAAATACTCTCGAAGGGTAAAATGACT
1 GAAATACCCTCGAAGGGTAAAATGACC
* * *
47206951 GAAATACCC-CTAATAGGTAAAATAACC
1 GAAATACCCTCGAA-GGGTAAAATGACC
* * * *
47206978 AAAATACCCTCGATGGATAAAATGATC
1 GAAATACCCTCGAAGGGTAAAATGACC
* *
47207005 GAAATACCCTCGATGGGTAAAATGATC
1 GAAATACCCTCGAAGGGTAAAATGACC
* * * **
47207032 GAAATACCCTCGATGGCTAAAATAATT
1 GAAATACCCTCGAAGGGTAAAATGACC
* *
47207059 GAAATACCCTCGAAGAGTAAAATGATC
1 GAAATACCCTCGAAGGGTAAAATGACC
* *
47207086 AAAATACCC-CAAATGGGTAAAATGACC
1 GAAATACCCTCGAA-GGGTAAAATGACC
*
47207113 GAAATACCCTCGAAGGGTTAAATGACC
1 GAAATACCCTCGAAGGGTAAAATGACC
* *
47207140 AAAATACCCTCGATAAGGTAAAATGACC
1 GAAATACCCTCGA-AGGGTAAAATGACC
* * * *
47207168 GAAATACCCCCGTAGGGTAGAAT-ACT
1 GAAATACCCTCGAAGGGTAAAATGACC
* * * *
47207194 AAAATCCCCTC-ATAAGATAAAATGACC
1 GAAATACCCTCGA-AGGGTAAAATGACC
* *
47207221 GTAATACCC-CTGTAGGGTAAAATGA
1 GAAATACCCTC-GAAGGGTAAAATGA
47207246 TCGTAATGCG
Statistics
Matches: 303, Mismatches: 62, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
26 25 0.08
27 250 0.83
28 28 0.09
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.20
Consensus pattern (27 bp):
GAAATACCCTCGAAGGGTAAAATGACC
Found at i:47207315 original size:23 final size:23
Alignment explanation
Indices: 47207288--47207331 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
47207278 TGCCCCTCGA
47207288 GGTTAAATGATT-ATTTTGTCTGT
1 GGTTAAATGATTGA-TTTGTCTGT
47207311 GGTTAAATGATTGATTTGTCT
1 GGTTAAATGATTGATTTGTCT
47207332 TTGTTTGGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.23, C:0.05, G:0.23, T:0.50
Consensus pattern (23 bp):
GGTTAAATGATTGATTTGTCTGT
Found at i:47207368 original size:24 final size:23
Alignment explanation
Indices: 47207302--47207368 Score: 71
Period size: 24 Copynumber: 2.8 Consensus size: 23
47207292 AAATGATTAT
* * *
47207302 TTTGTCTGTGGTTAAATGATTGA
1 TTTGTCTGTGTTTGAATGACTGA
* *
47207325 TTTGTCTTTGTTTGGTATGACTGA
1 TTTGTCTGTGTTT-GAATGACTGA
47207349 TTTGTCTGTAGTTTGAATGA
1 TTTGTCTGT-GTTTGAATGA
47207369 ATCAGTCTGA
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
23 11 0.31
24 20 0.57
25 4 0.11
ACGTcount: A:0.18, C:0.06, G:0.25, T:0.51
Consensus pattern (23 bp):
TTTGTCTGTGTTTGAATGACTGA
Found at i:47207487 original size:27 final size:27
Alignment explanation
Indices: 47207448--47207499 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
47207438 TACTGTACTG
47207448 GTGGCTCTGCCACA-ATCACTATTACCA
1 GTGGCTCTGCCACATAT-ACTATTACCA
47207475 GTGGCT-TGCCCACATATACTATTAC
1 GTGGCTCTG-CCACATATACTATTAC
47207500 TGGCAGCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 2 0.09
27 19 0.83
28 2 0.09
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (27 bp):
GTGGCTCTGCCACATATACTATTACCA
Found at i:47207555 original size:26 final size:26
Alignment explanation
Indices: 47207500--47207555 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
47207490 ATACTATTAC
* *
47207500 TGGCAGCTTTGCTACAATACTATTGC
1 TGGCAGCTTTGCTACAATACTACTGA
* * *
47207526 TGGCAGCTTTGCTGCGATGCTACTGA
1 TGGCAGCTTTGCTACAATACTACTGA
47207552 TGGC
1 TGGC
47207556 TTTGTGCCGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.18, C:0.23, G:0.27, T:0.32
Consensus pattern (26 bp):
TGGCAGCTTTGCTACAATACTACTGA
Found at i:47207592 original size:32 final size:32
Alignment explanation
Indices: 47207546--47207814 Score: 269
Period size: 32 Copynumber: 8.4 Consensus size: 32
47207536 GCTGCGATGC
47207546 TACTGATGGCTTTGTGCCGATCATAGTACTGT
1 TACTGATGGCTTTGTGCCGATCATAGTACTGT
* * * *
47207578 TATTGATGGTTTTGTACCGATCATAGTACAGT
1 TACTGATGGCTTTGTGCCGATCATAGTACTGT
* *
47207610 TACTAATGGCTTTGTGCCGATCATAGTACCGT
1 TACTGATGGCTTTGTGCCGATCATAGTACTGT
* *
47207642 TACTGATGGTTTTGTGCCGATCATATTTCACTGT
1 TACTGATGGCTTTGTGCCGATCATA-GT-ACTGT
* * *
47207676 TACTGATGGCTATGTGTCGATCATA-TCACTGC
1 TACTGATGGCTTTGTGCCGATCATAGT-ACTGT
* **
47207708 TACTGATGGCTTTGTACCGATCAT-GTTACCAT
1 TACTGATGGCTTTGTGCCGATCATAG-TACTGT
*
47207740 TACTGATGG-TTGTGTGCCGATCATA-TCACTGC
1 TACTGATGGCTT-TGTGCCGATCATAGT-ACTGT
* * * *
47207772 TACTGATGGCTTTATGCCAATCACATTACTG-
1 TACTGATGGCTTTGTGCCGATCATAGTACTGT
*
47207803 TACTTATGGCTT
1 TACTGATGGCTT
47207815 GTAGCCAATC
Statistics
Matches: 197, Mismatches: 31, Indels: 19
0.80 0.13 0.08
Matches are distributed among these distances:
31 14 0.07
32 152 0.77
33 5 0.03
34 26 0.13
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.38
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCGATCATAGTACTGT
Found at i:47207779 original size:130 final size:130
Alignment explanation
Indices: 47207546--47207794 Score: 319
Period size: 130 Copynumber: 1.9 Consensus size: 130
47207536 GCTGCGATGC
* * * *
47207546 TACTGATGGCTTTGTGCCGATCATAGTACTGTTATTGATGGTTTTGTACCGATCATAGTACAGTT
1 TACTGATGGCTATGTGCCGATCATAGTACTGCTACTGATGGCTTTGTACCGATCATAGTACAGTT
* * * *
47207611 ACTAATGGCTTTGTGCCGATCATAGTACCGTTACTGATGGTTTTGTGCCGATCATATTTCACTGT
66 ACTAATGGCTTTGTGCCGATCATAGTACCGCTACTGATGGCTTTATGCCAATCATATTTCACTGT
*
47207676 TACTGATGGCTATGTGTCGATCATA-TCACTGCTACTGATGGCTTTGTACCGATCAT-GTTACCA
1 TACTGATGGCTATGTGCCGATCATAGT-ACTGCTACTGATGGCTTTGTACCGATCATAG-TA-CA
* *
47207739 -TTACTGATGG-TTGTGTGCCGATCATA-TCACTGCTACTGATGGCTTTATGCCAATCA
63 GTTACTAATGGCTT-TGTGCCGATCATAGT-ACCGCTACTGATGGCTTTATGCCAATCA
47207795 CATTACTGTA
Statistics
Matches: 103, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
129 5 0.05
130 96 0.93
131 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.37
Consensus pattern (130 bp):
TACTGATGGCTATGTGCCGATCATAGTACTGCTACTGATGGCTTTGTACCGATCATAGTACAGTT
ACTAATGGCTTTGTGCCGATCATAGTACCGCTACTGATGGCTTTATGCCAATCATATTTCACTGT
Found at i:47207948 original size:26 final size:26
Alignment explanation
Indices: 47207871--47207935 Score: 103
Period size: 26 Copynumber: 2.5 Consensus size: 26
47207861 AGCCATTTTG
47207871 ACTACTGGCAGCTCTACTGCATTATT
1 ACTACTGGCAGCTCTACTGCATTATT
* * *
47207897 ACTATTGGGAGCTCTACTACATTATT
1 ACTACTGGCAGCTCTACTGCATTATT
47207923 ACTACTGGCAGCT
1 ACTACTGGCAGCT
47207936 ATGCTGCGAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.34
Consensus pattern (26 bp):
ACTACTGGCAGCTCTACTGCATTATT
Found at i:47208116 original size:27 final size:28
Alignment explanation
Indices: 47208051--47208116 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 28
47208041 CTTGTACCAT
*
47208051 ACTGATACTGTATCGGGCTTAAGCCCAC
1 ACTGATACTATATCGGGCTTAAGCCCAC
* * *
47208079 ACTGTTTCTATATTGGGC-TAAGGCCCAC
1 ACTGATACTATATCGGGCTTAA-GCCCAC
47208107 ACTG-TACTAT
1 ACTGATACTAT
47208117 TACTGTTAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
27 8 0.25
28 24 0.75
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (28 bp):
ACTGATACTATATCGGGCTTAAGCCCAC
Found at i:47212450 original size:70 final size:70
Alignment explanation
Indices: 47212352--47212788 Score: 343
Period size: 70 Copynumber: 6.3 Consensus size: 70
47212342 ATCTTTCTGT
* * * * * * * * * *
47212352 GCCCAGCGCTACTTGGATAGACCAACGAATAATGTGTACAACACTAGTCGAATAATCCACAATGT
1 GCCCAGCGCTAGTCGGATAAATCGACGAATAGTGTGTCCAGCACTAGTCGAATAATCGATAATGT
47212417 TTTGC
66 TTTGC
* * * * *
47212422 ACCCAGCGCTTGTCGGATAAATCGACGAATAGTGT-TCCCCA-TATTAGTCGAATAGTCGATAAT
1 GCCCAGCGCTAGTCGGATAAATCGACGAATAGTGTGT--CCAGCACTAGTCGAATAATCGATAAT
47212485 GTTTTGC
64 GTTTTGC
* * ** * * *
47212492 G-CTAGGTGCTAGTTAGATAAATCGAGGAGTAGTGTGCCCAGCACTAGTCGAATAATCGATAATG
1 GCCCA-GCGCTAGTCGGATAAATCGACGAATAGTGTGTCCAGCACTAGTCGAATAATCGATAATG
*
47212556 TTTTAC
65 TTTTGC
* * * * ** *
47212562 GCCTAACGCTAGTCTGATAAA-CTGA-G--TAGTGTGTCCAGCACTAGTCGTATAATTAACAATG
1 GCCCAGCGCTAGTCGGATAAATC-GACGAATAGTGTGTCCAGCACTAGTCGAATAATCGATAATG
47212623 TTTTGC
65 TTTTGC
* * * * * * *
47212629 ACCCAGCACTAGTCGAATAAA-CTGACGAATAGTGTGCCCCGCACTAGTTGAATAATTGATAATG
1 GCCCAGCGCTAGTCGGATAAATC-GACGAATAGTGTGTCCAGCACTAGTCGAATAATCGATAATG
47212693 TTTTGC
65 TTTTGC
* * * * * *
47212699 GCCCATCGCTAGTCCGATAAATCGATGAATAGTGT-CCCTAGCACTAGTCGAATAATCGAAAATT
1 GCCCAGCGCTAGTCGGATAAATCGACGAATAGTGTGTCC-AGCACTAGTCGAATAATCGATAATG
*
47212763 TTTTAC
65 TTTTGC
* *
47212769 GCCCAGCGCTATTCAGATAA
1 GCCCAGCGCTAGTCGGATAA
47212789 CCGAAAATAT
Statistics
Matches: 291, Mismatches: 64, Indels: 24
0.77 0.17 0.06
Matches are distributed among these distances:
67 54 0.19
68 1 0.00
69 11 0.04
70 219 0.75
71 6 0.02
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (70 bp):
GCCCAGCGCTAGTCGGATAAATCGACGAATAGTGTGTCCAGCACTAGTCGAATAATCGATAATGT
TTTGC
Found at i:47212748 original size:207 final size:206
Alignment explanation
Indices: 47212384--47212771 Score: 512
Period size: 207 Copynumber: 1.9 Consensus size: 206
47212374 CAACGAATAA
* * * *
47212384 TGTGTACAACACTAGTCGAATAATCCACAATGTTTTGCACCCAGCGCTTGTCGGATAAATCGACG
1 TGTGTACAACACTAGTCGAATAATCAACAATGTTTTGCACCCAGCACTAGTCGAATAAATCGACG
* * * * * *
47212449 AATAGTGTTCCCCATATTAGTCGAATAGTCGATAATGTTTTGCGCTAGGTGCTAGTTAGATAAAT
66 AATAGTGTGCCCCACACTAGTCGAATAATCGATAATGTTTTGCGCCA-GTGCTAGTCAGATAAAT
* *
47212514 CGAGGAGTAGTGTGCCCAGCACTAGTCGAATAATCGATAATGTTTTACGCCTAACGCTAGTCTGA
130 CGAGGAATAGTGTGCCCAGCACTAGTCGAATAATCGAAAATGTTTTACGCCTAACGCTAGTCTGA
47212579 TAAACTGAGTAG
195 TAAACTGAGTAG
* * * *
47212591 TGTGTCCAGCACTAGTCGTATAATTAACAATGTTTTGCACCCAGCACTAGTCGAATAAA-CTGAC
1 TGTGTACAACACTAGTCGAATAATCAACAATGTTTTGCACCCAGCACTAGTCGAATAAATC-GAC
* * * *
47212655 GAATAGTGTGCCCCGCACTAGTTGAATAATTGATAATGTTTTGCGCCCA-TCGCTAGTCCGATAA
65 GAATAGTGTGCCCCACACTAGTCGAATAATCGATAATGTTTTGCG-CCAGT-GCTAGTCAGATAA
* *
47212719 ATCGATGAATAGTGT-CCCTAGCACTAGTCGAATAATCGAAAATTTTTTACGCC
128 ATCGAGGAATAGTGTGCCC-AGCACTAGTCGAATAATCGAAAATGTTTTACGCC
47212772 CAGCGCTATT
Statistics
Matches: 155, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
206 5 0.03
207 148 0.95
208 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29
Consensus pattern (206 bp):
TGTGTACAACACTAGTCGAATAATCAACAATGTTTTGCACCCAGCACTAGTCGAATAAATCGACG
AATAGTGTGCCCCACACTAGTCGAATAATCGATAATGTTTTGCGCCAGTGCTAGTCAGATAAATC
GAGGAATAGTGTGCCCAGCACTAGTCGAATAATCGAAAATGTTTTACGCCTAACGCTAGTCTGAT
AAACTGAGTAG
Found at i:47212847 original size:20 final size:20
Alignment explanation
Indices: 47212822--47212864 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
47212812 CCAAATCCAT
47212822 AATATCACATTTCATAACTC
1 AATATCACATTTCATAACTC
* *
47212842 AATATCATATTTCATAATTC
1 AATATCACATTTCATAACTC
47212862 AAT
1 AAT
47212865 GTAACATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.40
Consensus pattern (20 bp):
AATATCACATTTCATAACTC
Found at i:47212873 original size:20 final size:20
Alignment explanation
Indices: 47212822--47212873 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
47212812 CCAAATCCAT
*
47212822 AATATCACATTTCATAACTC
1 AATATAACATTTCATAACTC
* * *
47212842 AATATCATATTTCATAATTC
1 AATATAACATTTCATAACTC
*
47212862 AATGTAACATTT
1 AATATAACATTT
47212874 ACTTCAATTA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.40, C:0.17, G:0.02, T:0.40
Consensus pattern (20 bp):
AATATAACATTTCATAACTC
Found at i:47216227 original size:40 final size:40
Alignment explanation
Indices: 47216166--47216463 Score: 207
Period size: 40 Copynumber: 7.5 Consensus size: 40
47216156 GTCTAAACAA
** * *
47216166 GGGCACGTAACTGC-ATTAAGGGGATCGAAGTACAAATAG
1 GGGCACGTATGTGCAATCAAGGGTATCGAAGTACAAATAG
* * *
47216205 GGGCATGTATGTGCAATCAAGGGTACCGACGTACAAATAG
1 GGGCACGTATGTGCAATCAAGGGTATCGAAGTACAAATAG
* * * * * *
47216245 GGGCACATATGTGCAAT-TA-GGCATACCATAGTACAAGTAA
1 GGGCACGTATGTGCAATCAAGGGTAT-CGA-AGTACAAATAG
* *
47216285 GGGTACGTATGTGCAATCAAGGGTATC-AACGTACAAACAG
1 GGGCACGTATGTGCAATCAAGGGTATCGAA-GTACAAATAG
* * * *
47216325 GGGCACGTATGTGCAATC-A-GGCATACCATAGTATAAATAA
1 GGGCACGTATGTGCAATCAAGGGTAT-CGA-AGTACAAATAG
* ** ** * * *
47216365 GGGCATGCCTGCACAA-CCAGAGGTA-CTGAAGTACAAACAA
1 GGGCACGTATGTGCAATCAAG-GGTATC-GAAGTACAAATAG
* * *
47216405 GGGCACATATGTGCAATCAAGGGTACCGAAGTAAAAATAG
1 GGGCACGTATGTGCAATCAAGGGTATCGAAGTACAAATAG
47216445 GGGCACGTATGTGCAATCA
1 GGGCACGTATGTGCAATCA
47216464 TCAATAATTA
Statistics
Matches: 196, Mismatches: 48, Indels: 29
0.72 0.18 0.11
Matches are distributed among these distances:
38 7 0.04
39 18 0.09
40 156 0.80
41 8 0.04
42 7 0.04
ACGTcount: A:0.36, C:0.18, G:0.27, T:0.19
Consensus pattern (40 bp):
GGGCACGTATGTGCAATCAAGGGTATCGAAGTACAAATAG
Found at i:47216301 original size:80 final size:80
Alignment explanation
Indices: 47216194--47216463 Score: 269
Period size: 80 Copynumber: 3.4 Consensus size: 80
47216184 AGGGGATCGA
* * * * *
47216194 AGTACAAATAGGGGCATGTATGTGCAATCAAGGGTACCGACGTACAAATAGGGGCACATATGTGC
1 AGTACAAATAAGGGTACGTATGTGCAATCAAGGGTACCAACGTACAAACAGGGGCACATATGTGC
*
47216259 AATTAGGCATACCAT
66 AATCAGGCATACCAT
* * *
47216274 AGTACAAGTAAGGGTACGTATGTGCAATCAAGGGTATCAACGTACAAACAGGGGCACGTATGTGC
1 AGTACAAATAAGGGTACGTATGTGCAATCAAGGGTACCAACGTACAAACAGGGGCACATATGTGC
47216339 AATCAGGCATACCAT
66 AATCAGGCATACCAT
* * * ** ** * * *
47216354 AGTATAAATAAGGGCATGCCTGCACAA-CCAGAGGTACTGAA-GTACAAACAAGGGCACATATGT
1 AGTACAAATAAGGGTACGTATGTGCAATCAAG-GGTAC-CAACGTACAAACAGGGGCACATATGT
*
47216417 GCAATCAAGG-GTACCGA-
64 GCAATC-AGGCATACC-AT
* * *
47216434 AGTAAAAATAGGGGCACGTATGTGCAATCA
1 AGTACAAATAAGGGTACGTATGTGCAATCA
47216464 TCAATAATTA
Statistics
Matches: 154, Mismatches: 31, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
79 3 0.02
80 144 0.94
81 7 0.05
ACGTcount: A:0.37, C:0.18, G:0.26, T:0.19
Consensus pattern (80 bp):
AGTACAAATAAGGGTACGTATGTGCAATCAAGGGTACCAACGTACAAACAGGGGCACATATGTGC
AATCAGGCATACCAT
Found at i:47224411 original size:40 final size:40
Alignment explanation
Indices: 47224361--47224510 Score: 167
Period size: 40 Copynumber: 3.8 Consensus size: 40
47224351 AGGGTTACAG
* * * **
47224361 AGTATAAACAAGGGCACGTAAGTGCATTCAGAGGTATTAA
1 AGTACAAACAAGGGCACGTATGTGCAATCAGAGGTACCAA
* * *
47224401 AGTACAAACAAGAGCATGTATGTGCAATCA-AGGGTACCGA
1 AGTACAAACAAGGGCACGTATGTGCAATCAGA-GGTACCAA
* * *
47224441 AGTACAAATAGGGGCACGTATGTGCAATCAGGGGTACCAA
1 AGTACAAACAAGGGCACGTATGTGCAATCAGAGGTACCAA
* *
47224481 AGTACAAACAAGGGAACGTATGTACAATCA
1 AGTACAAACAAGGGCACGTATGTGCAATCA
47224511 TCAATAATTA
Statistics
Matches: 90, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
39 1 0.01
40 89 0.99
ACGTcount: A:0.40, C:0.16, G:0.25, T:0.19
Consensus pattern (40 bp):
AGTACAAACAAGGGCACGTATGTGCAATCAGAGGTACCAA
Found at i:47227839 original size:24 final size:25
Alignment explanation
Indices: 47227802--47227848 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
47227792 ACTGGTCATA
*
47227802 GAGAGAATTAAGGA-AGGATATTCG
1 GAGAGAATTAAGGAGAGAATATTCG
* *
47227826 GAGAGATTTGAGGAGAGAATATT
1 GAGAGAATTAAGGAGAGAATATT
47227849 GGGATTTGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.40, C:0.02, G:0.34, T:0.23
Consensus pattern (25 bp):
GAGAGAATTAAGGAGAGAATATTCG
Found at i:47228528 original size:27 final size:27
Alignment explanation
Indices: 47228498--47228667 Score: 153
Period size: 27 Copynumber: 6.3 Consensus size: 27
47228488 GAGAGGTCAA
* * *
47228498 AAAAAGACCAAATTACCCCCGAAGGGT
1 AAAATGACCGAATTACCCCCAAAGGGT
* *
47228525 AAAATGACTGAATTACCCCCTAAGGGT
1 AAAATGACCGAATTACCCCCAAAGGGT
** *
47228552 AAAATGATTGAATTACCCCTAAAGGGT
1 AAAATGACCGAATTACCCCCAAAGGGT
* *
47228579 AAAATGATCGAATTACCCCCAAAGGAT
1 AAAATGACCGAATTACCCCCAAAGGGT
* **
47228606 AAAATGACTGAATTACCCTTGAAA-GGT
1 AAAATGACCGAATTACCC-CCAAAGGGT
* * * * * *
47228633 GAAATGACCAAAATACCCCTATAGGGA
1 AAAATGACCGAATTACCCCCAAAGGGT
47228660 AAAATGAC
1 AAAATGAC
47228668 TGTTATACCC
Statistics
Matches: 117, Mismatches: 24, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
26 2 0.02
27 112 0.96
28 3 0.03
ACGTcount: A:0.43, C:0.20, G:0.18, T:0.19
Consensus pattern (27 bp):
AAAATGACCGAATTACCCCCAAAGGGT
Found at i:47228577 original size:54 final size:54
Alignment explanation
Indices: 47228508--47228669 Score: 177
Period size: 54 Copynumber: 3.0 Consensus size: 54
47228498 AAAAAGACCA
** *
47228508 AATTACCCCCGAAGGGTAAAATGACTGAATTACCCCCTAAGGGTAAAATGATTG
1 AATTACCCCTAAAGGGTAAAATGACTGAATTACCCCCTAAGGGTAAAATGACTG
* *
47228562 AATTACCCCTAAAGGGTAAAATGA-TCGAATTACCCCCAAAGGATAAAATGACTG
1 AATTACCCCTAAAGGGTAAAATGACT-GAATTACCCCCTAAGGGTAAAATGACTG
* * ** * *
47228616 AATTACCCTTGAAA-GGTGAAATGACCAAAATA-CCCCTATAGGGAAAAATGACTG
1 AATTACCCCT-AAAGGGTAAAATGACTGAATTACCCCCTA-AGGGTAAAATGACTG
47228670 TTATACCCCT
Statistics
Matches: 91, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
53 6 0.07
54 82 0.90
55 3 0.03
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.21
Consensus pattern (54 bp):
AATTACCCCTAAAGGGTAAAATGACTGAATTACCCCCTAAGGGTAAAATGACTG
Found at i:47228678 original size:81 final size:81
Alignment explanation
Indices: 47228508--47228666 Score: 203
Period size: 81 Copynumber: 2.0 Consensus size: 81
47228498 AAAAAGACCA
* * * *** *
47228508 AATTACCCCCGAAGGGTAAAATGACTGAATTACCCCCTAAGGGTAAAATGATTGAATTACCCCTA
1 AATTACCCCCAAAGGATAAAATGACTGAATTACCCCCTAAAGGTAAAATGACCAAAATACCCCTA
*
47228573 AAGGGTAAAATGATCG
66 AAGGGAAAAATGATCG
* *
47228589 AATTACCCCCAAAGGATAAAATGACTGAATTA-CCCTTGAAAGGTGAAATGACCAAAATACCCCT
1 AATTACCCCCAAAGGATAAAATGACTGAATTACCCCCT-AAAGGTAAAATGACCAAAATACCCCT
*
47228653 ATAGGGAAAAATGA
65 AAAGGGAAAAATGA
47228667 CTGTTATACC
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
80 4 0.06
81 62 0.94
ACGTcount: A:0.42, C:0.19, G:0.18, T:0.21
Consensus pattern (81 bp):
AATTACCCCCAAAGGATAAAATGACTGAATTACCCCCTAAAGGTAAAATGACCAAAATACCCCTA
AAGGGAAAAATGATCG
Found at i:47228870 original size:26 final size:26
Alignment explanation
Indices: 47228841--47228917 Score: 109
Period size: 26 Copynumber: 3.0 Consensus size: 26
47228831 TTGCCACATA
* *
47228841 TACTGTTACTGGTAACTTTGCTGCAT
1 TACTATTACTGGCAACTTTGCTGCAT
*
47228867 TACTATTACTTGCAACTTTGCTGCAT
1 TACTATTACTGGCAACTTTGCTGCAT
* *
47228893 TACTATTACTGGCAGCTTTGTTGCA
1 TACTATTACTGGCAACTTTGCTGCA
47228918 ATATTAGTGT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.42
Consensus pattern (26 bp):
TACTATTACTGGCAACTTTGCTGCAT
Found at i:47229067 original size:28 final size:28
Alignment explanation
Indices: 47229027--47229116 Score: 103
Period size: 28 Copynumber: 3.2 Consensus size: 28
47229017 AATTGTATTA
* * * *
47229027 TTACTGTTTTGGGCTAGGGTCCACACTAT
1 TTACTGTATTGGGCTAAGGCCCACACT-G
47229056 TTA-TGTATTGGGCTAAGGCCCACACTG
1 TTACTGTATTGGGCTAAGGCCCACACTG
* *
47229083 TTACTGTATCGGGCTAAGGCCCACATTG
1 TTACTGTATTGGGCTAAGGCCCACACTG
47229111 -TACTGT
1 TTACTGT
47229117 TACTGAATAG
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
27 9 0.17
28 42 0.78
29 3 0.06
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.33
Consensus pattern (28 bp):
TTACTGTATTGGGCTAAGGCCCACACTG
Found at i:47231357 original size:27 final size:27
Alignment explanation
Indices: 47231293--47231461 Score: 180
Period size: 27 Copynumber: 6.3 Consensus size: 27
47231283 GAAAGGTCAA
** *
47231293 AAAATGATTGAATTACCCCTGAAAGGGT
1 AAAATGACCGAATTACCCCCGAAA-GGT
47231321 AAAATGACCGAATTACCCCCGAAAGGT
1 AAAATGACCGAATTACCCCCGAAAGGT
*
47231348 AAAATAACCGAATTACCCCC-AAAGGTT
1 AAAATGACCGAATTACCCCCGAAAGG-T
*
47231375 AAAATGACCGAATTA-CCCCGAAGGGT
1 AAAATGACCGAATTACCCCCGAAAGGT
** * * *
47231401 AAAATGATGGAATTGCCCTCGAAGGGT
1 AAAATGACCGAATTACCCCCGAAAGGT
* ** *
47231428 AAAATGACTGAATTACCCTTGAAGGGT
1 AAAATGACCGAATTACCCCCGAAAGGT
47231455 AAAATGA
1 AAAATGA
47231462 TTGTTATACC
Statistics
Matches: 124, Mismatches: 14, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
26 22 0.18
27 81 0.65
28 21 0.17
ACGTcount: A:0.40, C:0.19, G:0.21, T:0.20
Consensus pattern (27 bp):
AAAATGACCGAATTACCCCCGAAAGGT
Found at i:47231473 original size:80 final size:82
Alignment explanation
Indices: 47231293--47231464 Score: 213
Period size: 80 Copynumber: 2.1 Consensus size: 82
47231283 GAAAGGTCAA
47231293 AAAATGATTGAATTACCCCTGAAAGGGTAAAATGACCGAATTACCCCCGAAAGGTAAAATAACCG
1 AAAATGATTGAATTACCCCTGAAAGGGTAAAATGACCGAATTACCCCCGAAAGGTAAAATAACCG
*
47231358 AATTACCCCCAAAGGTT
66 AATTACCCCCAAAGGGT
** ** * * * * *
47231375 AAAATGACCGAATTACCCC-G-AAGGGTAAAATGATGGAATTGCCCTCGAAGGGTAAAATGACTG
1 AAAATGATTGAATTACCCCTGAAAGGGTAAAATGACCGAATTACCCCCGAAAGGTAAAATAACCG
***
47231438 AATTACCCTTGAAGGGT
66 AATTACCCCCAAAGGGT
47231455 AAAATGATTG
1 AAAATGATTG
47231465 TTATACCCCT
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
80 57 0.76
81 1 0.01
82 17 0.23
ACGTcount: A:0.40, C:0.19, G:0.21, T:0.21
Consensus pattern (82 bp):
AAAATGATTGAATTACCCCTGAAAGGGTAAAATGACCGAATTACCCCCGAAAGGTAAAATAACCG
AATTACCCCCAAAGGGT
Found at i:47231655 original size:27 final size:26
Alignment explanation
Indices: 47231625--47231682 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
47231615 GTACTGGTGG
*
47231625 CTTTGCCACATATACTGTTACTGGCAA
1 CTTTGCCACAT-TACTATTACTGGCAA
**
47231652 CTTTGCTGCATTACTATTACTGGCAA
1 CTTTGCCACATTACTATTACTGGCAA
47231678 CTTTG
1 CTTTG
47231683 TTGCGATATT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 19 0.68
27 9 0.32
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (26 bp):
CTTTGCCACATTACTATTACTGGCAA
Found at i:47231850 original size:28 final size:28
Alignment explanation
Indices: 47231793--47231886 Score: 111
Period size: 28 Copynumber: 3.4 Consensus size: 28
47231783 ACTGCATTGT
* * *
47231793 ACTGTTACTGTTTTGGGCTAGGGCCCAC
1 ACTGTTACTGTATTGGGCTAAGGCCTAC
* *
47231821 ACTATTTA-TGTATTGGTCTAAGGCCTAC
1 ACT-GTTACTGTATTGGGCTAAGGCCTAC
*
47231849 ACTGTTACTGTATCGGGCTAAGGCCTAC
1 ACTGTTACTGTATTGGGCTAAGGCCTAC
47231877 ACTG-TACTGT
1 ACTGTTACTGT
47231887 TACTGAATAG
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
27 9 0.16
28 44 0.79
29 3 0.05
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.34
Consensus pattern (28 bp):
ACTGTTACTGTATTGGGCTAAGGCCTAC
Found at i:47231891 original size:33 final size:34
Alignment explanation
Indices: 47231849--47231919 Score: 99
Period size: 33 Copynumber: 2.1 Consensus size: 34
47231839 TAAGGCCTAC
* *
47231849 ACTGTTACTGTATCGGGCTAAGGCCTACACTG-T
1 ACTGTTACTGAATAGGGCTAAGGCCTACACTGTT
* *
47231882 ACTGTTACTGAATAGGGCTCAGGCCTAGACTGTT
1 ACTGTTACTGAATAGGGCTAAGGCCTACACTGTT
47231916 ACTG
1 ACTG
47231920 CATGTTGTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
33 28 0.85
34 5 0.15
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.30
Consensus pattern (34 bp):
ACTGTTACTGAATAGGGCTAAGGCCTACACTGTT
Found at i:47243689 original size:29 final size:27
Alignment explanation
Indices: 47243640--47243723 Score: 87
Period size: 28 Copynumber: 3.0 Consensus size: 27
47243630 TGACCATGCA
* *
47243640 CCACCATTTTAAAGATTTTACAATTTTG
1 CCACTATTTTTAA-ATTTTACAATTTTG
* *
47243668 CCACTGTATTTTTAAATTTTACAGTTCTG
1 CCAC--TATTTTTAAATTTTACAATTTTG
*
47243697 CCACTATTTTCTAGATTTTACAATTTT
1 CCACTATTTT-TAAATTTTACAATTTT
47243724 ACCATTGGTT
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
27 6 0.13
28 17 0.37
29 16 0.35
30 7 0.15
ACGTcount: A:0.27, C:0.18, G:0.07, T:0.48
Consensus pattern (27 bp):
CCACTATTTTTAAATTTTACAATTTTG
Found at i:47243744 original size:57 final size:57
Alignment explanation
Indices: 47243652--47243761 Score: 132
Period size: 57 Copynumber: 1.9 Consensus size: 57
47243642 ACCATTTTAA
* **
47243652 AGATTTTACAATTTTGCCACTGTATTTTTAAATTTTACAGTTCTGCCACTATTTTCT
1 AGATTTTACAATTTTACCACTGTATTTCCAAATTTTACAGTTCTGCCACTATTTTCT
* * * * *
47243709 AGATTTTACAATTTTACCATTGGT-TTTCCAGATTTTATAGTTTTGCCATTATT
1 AGATTTTACAATTTTACCACT-GTATTTCCAAATTTTACAGTTCTGCCACTATT
47243762 CAGTCCCTGA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
57 42 0.95
58 2 0.05
ACGTcount: A:0.25, C:0.15, G:0.10, T:0.50
Consensus pattern (57 bp):
AGATTTTACAATTTTACCACTGTATTTCCAAATTTTACAGTTCTGCCACTATTTTCT
Found at i:47244688 original size:36 final size:36
Alignment explanation
Indices: 47244645--47244717 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
47244635 TTGAAGTAGC
47244645 AAACCCATTTTATCGTATTGAAATAATTGATATGCG
1 AAACCCATTTTATCGTATTGAAATAATTGATATGCG
*
47244681 AAACCCATTTTATCGTATTGAAATGATTGATATGCG
1 AAACCCATTTTATCGTATTGAAATAATTGATATGCG
47244717 A
1 A
47244718 GACTGTTTGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.36
Consensus pattern (36 bp):
AAACCCATTTTATCGTATTGAAATAATTGATATGCG
Found at i:47251151 original size:50 final size:51
Alignment explanation
Indices: 47251045--47251286 Score: 179
Period size: 50 Copynumber: 4.7 Consensus size: 51
47251035 GATAAAGAAA
* * *
47251045 TCCCATGTAAGACCATGTTTAGGACATGGCATTGGCATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--T-ACA-TATGAGAGG
* *
47251101 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACTA-AGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTACATATGAGAGG
** * * * * **
47251151 TCCCCCGTAAGACCCTGTCTAGGACAAGGCATCGGCAC--CGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTAC-ATATGAGAGG
* ** * * * * **
47251201 TCCCTTGTAAGACCATACCTGGGATATGGAATTGGCAGTACA-A-GAAACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTACATATGAGAGG
* *
47251250 TCCCATGTAAGACCATGTCTGGGATATGGCTTTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
47251287 TGTTATTATC
Statistics
Matches: 149, Mismatches: 33, Indels: 15
0.76 0.17 0.08
Matches are distributed among these distances:
49 35 0.23
50 74 0.50
51 2 0.01
52 2 0.01
53 1 0.01
55 1 0.01
56 34 0.23
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (51 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTACATATGAGAGG
Found at i:47257203 original size:56 final size:56
Alignment explanation
Indices: 47257107--47257358 Score: 294
Period size: 56 Copynumber: 4.7 Consensus size: 56
47257097 ATTTGGGTAA
*
47257107 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCACTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCACTGAGATTATG
* * *
47257163 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCACTGAGATTATG
* *
47257219 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGG---CACT-A-A-GATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCACTGAGATTATG
** * *
47257269 AGAGGTCCCCCGTAAGACCATGTTTGGGACATGGCATGGGCA-C-C---GA-TATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCACTGAGATTATG
** * *
47257319 AGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGG
47257359 TAGTACAAGA
Statistics
Matches: 172, Mismatches: 21, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
50 76 0.44
51 2 0.01
52 2 0.01
53 3 0.02
56 89 0.52
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (56 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCACTGAGATTATG
Found at i:47257353 original size:100 final size:107
Alignment explanation
Indices: 47257112--47257358 Score: 283
Period size: 100 Copynumber: 2.3 Consensus size: 107
47257102 GGTAAAGAGA
* *
47257112 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCACTGAGATTATGAGAGGTCCCATGTA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGG-A-CACTGAGATGATGAGAGGTCCCACGTA
* * **
47257177 AGACCATGTCTAGGACATGGCGTTGGCATCATTGAGATTATGAGAGG
64 AGACCATGTCTAGGACATGGCATGGGCATC--T-AGATTATGAGAAC
* *
47257224 TCCCATGTAAGACCATGTTTGGGACATGGCATTGG-CACT-A-A-GATGAGAGGTCCCCCGTAAG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGACACTGAGATGATGAGAGGTCCCACGTAAG
* * *
47257285 ACCATGTTTGGGACATGGCATGGGCA-C-CGA-TATGAGAAC
66 ACCATGTCTAGGACATGGCATGGGCATCTAGATTATGAGAAC
* *
47257324 TCCCATGTAAGACCATATCTGGGATATGGCATTGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGG
47257359 TAGTACAAGA
Statistics
Matches: 121, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
100 39 0.32
101 2 0.02
105 1 0.01
106 39 0.32
107 1 0.01
108 1 0.01
109 4 0.03
112 34 0.28
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (107 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGACACTGAGATGATGAGAGGTCCCACGTAAG
ACCATGTCTAGGACATGGCATGGGCATCTAGATTATGAGAAC
Found at i:47257394 original size:49 final size:47
Alignment explanation
Indices: 47257224--47257409 Score: 167
Period size: 50 Copynumber: 3.8 Consensus size: 47
47257214 TTATGAGAGG
* * *
47257224 TCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACTAAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAGTAA-A-GA-AGC
** * * *
47257274 TCCCCCGTAAGACCATGTTTGGGACATGGCATGGGCACCGATATGAGAA-C
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA--G-TA-AAGAAGC
* * *
47257324 TCCCATGTAAGACCATATCTGGGATATGGCATTGGTAGTACAAGAAGC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAGTA-AAGAAGC
* *
47257372 ATCCCATGTAAGACCATGTCTGGGATATGGCTTTGGCA
1 -TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
47257410 TGTTATTATC
Statistics
Matches: 112, Mismatches: 18, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
47 6 0.05
48 2 0.02
49 34 0.30
50 64 0.57
51 1 0.01
52 2 0.02
53 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (47 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAGTAAAGAAGC
Found at i:47262434 original size:15 final size:15
Alignment explanation
Indices: 47262410--47262446 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
47262400 AAAACGTAAT
47262410 TTTTTCATTTTAATAG
1 TTTTT-ATTTTAATAG
*
47262426 TTTTTATTTTTATAG
1 TTTTTATTTTAATAG
47262441 TTTTTA
1 TTTTTA
47262447 GAGAATTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 15 0.75
16 5 0.25
ACGTcount: A:0.22, C:0.03, G:0.05, T:0.70
Consensus pattern (15 bp):
TTTTTATTTTAATAG
Found at i:47269857 original size:26 final size:27
Alignment explanation
Indices: 47269787--47269858 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
47269777 TCCAAACTGA
47269787 TATAAAATGACTGTTATGCCCCCACGT
1 TATAAAATGACTGTTATGCCCCCACGT
** * *
47269814 GGTAAAATGACTGTTATGCCCCTATGT
1 TATAAAATGACTGTTATGCCCCCACGT
*
47269841 TATAAAATGATTG-TATGC
1 TATAAAATGACTGTTATGC
47269859 TCTATGCATG
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
26 5 0.13
27 33 0.87
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (27 bp):
TATAAAATGACTGTTATGCCCCCACGT
Found at i:47272169 original size:36 final size:36
Alignment explanation
Indices: 47272123--47272201 Score: 131
Period size: 36 Copynumber: 2.2 Consensus size: 36
47272113 ACTTCACAAC
* *
47272123 TTAGCCGTTCCTTCTATTTCTTCTTTCTGTTTCAGT
1 TTAGCTGTTCCTTCTATTTCTTCCTTCTGTTTCAGT
*
47272159 TTAGCTGTTCCTTCTGTTTCTTCCTTCTGTTTCAGT
1 TTAGCTGTTCCTTCTATTTCTTCCTTCTGTTTCAGT
47272195 TTAGCTG
1 TTAGCTG
47272202 CTTCACAACC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.08, C:0.24, G:0.14, T:0.54
Consensus pattern (36 bp):
TTAGCTGTTCCTTCTATTTCTTCCTTCTGTTTCAGT
Found at i:47272184 original size:13 final size:13
Alignment explanation
Indices: 47272166--47272191 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
47272156 AGTTTAGCTG
47272166 TTCCTTCTGTTTC
1 TTCCTTCTGTTTC
47272179 TTCCTTCTGTTTC
1 TTCCTTCTGTTTC
47272192 AGTTTAGCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.31, G:0.08, T:0.62
Consensus pattern (13 bp):
TTCCTTCTGTTTC
Found at i:47278113 original size:120 final size:120
Alignment explanation
Indices: 47277948--47279070 Score: 2149
Period size: 120 Copynumber: 9.4 Consensus size: 120
47277938 TTTGATGTTC
* *
47277948 AAATTATATAGTTTAATT-AAATATATTTAATAGTAATTATGTTAATTTATATTTTACAGTATCA
1 AAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCA
*
47278012 TATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATT
66 TATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATT
*
47278067 AAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCA
1 AAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCA
*
47278132 TATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTCATT
66 TATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATT
47278187 AAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCA
1 AAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCA
47278252 TATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATT
66 TATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATT
47278307 AAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCA
1 AAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCA
47278372 TATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATT
66 TATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATT
*
47278427 AAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCA
1 AAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCA
*
47278492 TATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTCATT
66 TATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATT
47278547 AAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCA
1 AAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCA
*
47278612 TATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATT
66 TATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATT
*
47278667 AAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCA
1 AAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCA
*
47278732 TATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTCATT
66 TATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATT
47278787 AAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCA
1 AAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCA
47278852 TATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATT
66 TATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATT
47278907 AAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCA
1 AAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCA
47278972 TATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATT
66 TATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATT
47279027 AAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
1 AAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
47279071 TAAATATGAT
Statistics
Matches: 988, Mismatches: 15, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
119 18 0.02
120 970 0.98
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (120 bp):
AAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCA
TATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATT
Found at i:47278327 original size:18 final size:17
Alignment explanation
Indices: 47278299--47278333 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
47278289 ATTATTAAGA
*
47278299 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
47278316 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
47278334 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:47278927 original size:18 final size:17
Alignment explanation
Indices: 47278899--47278933 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
47278889 ATTATTAAGA
*
47278899 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
47278916 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
47278934 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:47279047 original size:18 final size:17
Alignment explanation
Indices: 47279019--47279053 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
47279009 ATTATTAAGA
*
47279019 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
47279036 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
47279054 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:47279283 original size:44 final size:45
Alignment explanation
Indices: 47279218--47279308 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
47279208 ACCTCTATTC
* * *
47279218 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
47279262 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
47279307 CA
1 CA
47279309 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Done.