Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 154 of 207
Found at i:47279310 original size:16 final size:16
Alignment explanation
Indices: 47279289--47279357 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
47279279 GATTAGCTAT
47279289 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
47279305 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
47279322 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
47279338 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
47279354 TACA
1 TACA
47279358 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:47279331 original size:33 final size:32
Alignment explanation
Indices: 47279289--47279357 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
47279279 GATTAGCTAT
47279289 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
*
47279322 TACACCTCTAATCCAATACGCCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
47279354 TACA
1 TACA
47279358 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:47279646 original size:31 final size:32
Alignment explanation
Indices: 47279600--47279721 Score: 93
Period size: 31 Copynumber: 3.6 Consensus size: 32
47279590 ATTATTTTTA
* *
47279600 AAATATAATTTAAATATAAAATATA-AAATTT
1 AAATATTATTAAAATATAAAATATATAAATTT
* * *
47279631 GAATATTATTAAAATATAACATTTATAAATTT
1 AAATATTATTAAAATATAAAATATATAAATTT
* * *
47279663 AAATATATATTTAAAATAATTTAATTATATACTTAATAT
1 AAATAT-TA-TTAAAAT-A--TAA-AATATA-TAAATTT
47279702 AAATATTATATAAAATATAA
1 AAATATTAT-TAAAATATAA
47279722 TTTATAAAAT
Statistics
Matches: 72, Mismatches: 10, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
31 20 0.28
32 11 0.15
33 2 0.03
34 7 0.10
35 4 0.06
37 5 0.07
38 12 0.17
39 11 0.15
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.42
Consensus pattern (32 bp):
AAATATTATTAAAATATAAAATATATAAATTT
Found at i:47279683 original size:22 final size:22
Alignment explanation
Indices: 47279658--47279703 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
47279648 AACATTTATA
*
47279658 AATTTAAATATATATTTAAAAT
1 AATTTAAATATATACTTAAAAT
* *
47279680 AATTTAATTATATACTTAATAT
1 AATTTAAATATATACTTAAAAT
47279702 AA
1 AA
47279704 ATATTATATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (22 bp):
AATTTAAATATATACTTAAAAT
Found at i:47279686 original size:10 final size:11
Alignment explanation
Indices: 47279600--47279691 Score: 54
Period size: 11 Copynumber: 8.6 Consensus size: 11
47279590 ATTATTTTTA
47279600 AAATATAATTT
1 AAATATAATTT
47279611 AAATATAA---
1 AAATATAATTT
*
47279619 AATATAAAATTT
1 AA-ATATAATTT
* * *
47279631 GAATATTATTA
1 AAATATAATTT
47279642 AAATATAACATTT
1 AAATAT-A-ATTT
47279655 --ATA-AATTT
1 AAATATAATTT
47279663 AAATATATATTT
1 AAATATA-ATTT
47279675 AAA-ATAATTT
1 AAATATAATTT
*
47279685 AATTATA
1 AAATATA
47279692 TACTTAATAT
Statistics
Matches: 61, Mismatches: 9, Indels: 22
0.66 0.10 0.24
Matches are distributed among these distances:
8 6 0.10
9 6 0.10
10 9 0.15
11 29 0.48
12 8 0.13
13 3 0.05
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.42
Consensus pattern (11 bp):
AAATATAATTT
Found at i:47282475 original size:21 final size:21
Alignment explanation
Indices: 47282437--47282477 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
47282427 GTAGGAGTTA
*
47282437 ATTTAATTTCTTTGAATTAAT
1 ATTTAATTTATTTGAATTAAT
47282458 ATTTAATTTA-TTGTAATTAA
1 ATTTAATTTATTTG-AATTAA
47282478 ATAAATGAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (21 bp):
ATTTAATTTATTTGAATTAAT
Found at i:47282838 original size:9 final size:9
Alignment explanation
Indices: 47282824--47282861 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
47282814 TAAACGAATT
*
47282824 GAGTTATTC
1 GAGTTAATC
47282833 GAGTTAATC
1 GAGTTAATC
47282842 GAGTTAATC
1 GAGTTAATC
*
47282851 GAGTTATTC
1 GAGTTAATC
47282860 GA
1 GA
47282862 ATCAACTCGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.29, C:0.11, G:0.24, T:0.37
Consensus pattern (9 bp):
GAGTTAATC
Found at i:47285979 original size:30 final size:28
Alignment explanation
Indices: 47285939--47285994 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 28
47285929 TAAAGTAATT
47285939 AAATAAAAGAAAATA-AAAGAAATCAAACG
1 AAATAAAAGAAAA-AGAAAGAAA-CAAACG
47285968 AAATAAAAAGAAAAAGAAAGAAACAAA
1 AAAT-AAAAGAAAAAGAAAGAAACAAA
47285995 ACAGAAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
29 9 0.36
30 16 0.64
ACGTcount: A:0.77, C:0.05, G:0.11, T:0.07
Consensus pattern (28 bp):
AAATAAAAGAAAAAGAAAGAAACAAACG
Found at i:47286893 original size:23 final size:24
Alignment explanation
Indices: 47286867--47286912 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
47286857 GTGTGAATTT
* *
47286867 GTGAAATAATTATTG-ATTGAAAG
1 GTGAAAAAATGATTGAATTGAAAG
47286890 GTGAAAAAATGATTGAATTGAAA
1 GTGAAAAAATGATTGAATTGAAA
47286913 ATGTGAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.48, C:0.00, G:0.22, T:0.30
Consensus pattern (24 bp):
GTGAAAAAATGATTGAATTGAAAG
Found at i:47288292 original size:18 final size:20
Alignment explanation
Indices: 47288252--47288293 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
47288242 TAAAGATGTT
47288252 TGATGAAAGAATAAATGATAC
1 TGATGAAAGAAT-AATGATAC
47288273 TGATGAAAGAAT-AT-ATAC
1 TGATGAAAGAATAATGATAC
47288291 TGA
1 TGA
47288294 AGATAGAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 7 0.33
19 2 0.10
21 12 0.57
ACGTcount: A:0.50, C:0.05, G:0.19, T:0.26
Consensus pattern (20 bp):
TGATGAAAGAATAATGATAC
Found at i:47292118 original size:5 final size:5
Alignment explanation
Indices: 47292104--47292140 Score: 58
Period size: 5 Copynumber: 7.4 Consensus size: 5
47292094 TATATAATAA
47292104 ATTA- ATTAT ATTAT ATTAT ATTAT ATTATT ATTAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTA-T ATTAT AT
47292141 AAAAGAAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
4 4 0.13
5 22 0.71
6 5 0.16
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:47292118 original size:21 final size:23
Alignment explanation
Indices: 47292094--47292142 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 23
47292084 AATAAATAAG
47292094 TATATAATAAATTA-ATTA-TAT
1 TATATAATAAATTATATTATTAT
*
47292115 TATAT--TATATTATATTATTAT
1 TATATAATAAATTATATTATTAT
47292136 TATATAA
1 TATATAA
47292143 AAGAAATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
19 6 0.26
20 4 0.17
21 13 0.57
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (23 bp):
TATATAATAAATTATATTATTAT
Found at i:47292309 original size:30 final size:28
Alignment explanation
Indices: 47292269--47292324 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 28
47292259 TAAAGTAATT
47292269 AAATAAAAGAAAATA-AAAGAAATCAAACG
1 AAATAAAAGAAAA-AGAAAGAAA-CAAACG
47292298 AAATAAAAAGAAAAAGAAAGAAACAAA
1 AAAT-AAAAGAAAAAGAAAGAAACAAA
47292325 ACAGAAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
29 9 0.36
30 16 0.64
ACGTcount: A:0.77, C:0.05, G:0.11, T:0.07
Consensus pattern (28 bp):
AAATAAAAGAAAAAGAAAGAAACAAACG
Found at i:47293037 original size:3 final size:3
Alignment explanation
Indices: 47293023--47293052 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
47293013 GTGAGGTAAG
*
47293023 TAT TAA TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
47293053 GAGTGAGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:47293467 original size:37 final size:39
Alignment explanation
Indices: 47293408--47293503 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
47293398 CGGATAGATT
* * * *
47293408 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
47293445 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
47293484 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
47293504 TTCTGGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:47293487 original size:39 final size:38
Alignment explanation
Indices: 47293367--47293500 Score: 103
Period size: 39 Copynumber: 3.4 Consensus size: 38
47293357 GACCTCGAGT
* * *
47293367 CGATGAGACACTGGGTGTCACAATATTTCTTCGGATA-GATT
1 CGATGAGACACTGGGTGTCA-ACTA-TTCTTC-GA-ACTATC
** ** * *
47293408 CGATGAGGTACTGGGTACCAACT-TTCTTCG-GCTTTGC
1 CGATGAGACACTGGGTGTCAACTATTCTTCGAACTAT-C
47293445 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGACACTGGGTGTCAACTATT-CTTCGAACTATC
*
47293484 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
47293501 CCATTCTGGT
Statistics
Matches: 72, Mismatches: 16, Indels: 12
0.72 0.16 0.12
Matches are distributed among these distances:
36 1 0.01
37 20 0.28
38 8 0.11
39 22 0.31
40 5 0.07
41 16 0.22
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (38 bp):
CGATGAGACACTGGGTGTCAACTATTCTTCGAACTATC
Found at i:47298930 original size:24 final size:26
Alignment explanation
Indices: 47298879--47298930 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
47298869 AGTTATGTCT
*
47298879 TCAAACACAAACATATATTTATATAC
1 TCAAACACAAACATATACTTATATAC
47298905 TCAAAC-C-AACATTATACTTATA-AC
1 TCAAACACAAACA-TATACTTATATAC
47298929 TC
1 TC
47298931 CATTTACAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 8 0.33
25 10 0.42
26 6 0.25
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (26 bp):
TCAAACACAAACATATACTTATATAC
Found at i:47301684 original size:43 final size:43
Alignment explanation
Indices: 47301623--47301724 Score: 152
Period size: 43 Copynumber: 2.4 Consensus size: 43
47301613 AGTATCAGGG
*
47301623 GACACATGGCCGTGTCACCTAG-CTGTGTGTAACACACGGCTGA
1 GACACATGGCCGTGTCACCT-GCCCGTGTGTAACACACGGCTGA
* *
47301666 GACACATGGCCGTGTCACCTGCCCGTGTGTCACACACGGCTGG
1 GACACATGGCCGTGTCACCTGCCCGTGTGTAACACACGGCTGA
*
47301709 GACACATGCCCGTGTC
1 GACACATGGCCGTGTC
47301725 TCTACCCATG
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
42 1 0.02
43 53 0.98
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.20
Consensus pattern (43 bp):
GACACATGGCCGTGTCACCTGCCCGTGTGTAACACACGGCTGA
Found at i:47304227 original size:17 final size:17
Alignment explanation
Indices: 47304205--47304238 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
47304195 TATACATGCT
47304205 TAACAAAAATTTGAGGC
1 TAACAAAAATTTGAGGC
*
47304222 TAACAAAAATTTTAGGC
1 TAACAAAAATTTGAGGC
47304239 AAATATAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.47, C:0.12, G:0.15, T:0.26
Consensus pattern (17 bp):
TAACAAAAATTTGAGGC
Found at i:47309377 original size:15 final size:13
Alignment explanation
Indices: 47309346--47309376 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
47309336 TGAAATTAAA
47309346 ATATAAAAAATAT
1 ATATAAAAAATAT
*
47309359 ATATAAAAAATGT
1 ATATAAAAAATAT
47309372 ATATA
1 ATATA
47309377 TTTATAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (13 bp):
ATATAAAAAATAT
Found at i:47312506 original size:22 final size:23
Alignment explanation
Indices: 47312475--47312550 Score: 81
Period size: 22 Copynumber: 3.4 Consensus size: 23
47312465 AACTAATCCT
47312475 TTCTCAAATTTCCTCTCAATTTC
1 TTCTCAAATTTCCTCTCAATTTC
47312498 TTCT-AAATTTCCTCTCAATTTGC
1 TTCTCAAATTTCCTCTCAATTT-C
*
47312521 -TCTTAAA-TTCCT-TCAAAATTTC
1 TTCTCAAATTTCCTCTC--AATTTC
47312543 -TCTCAAAT
1 TTCTCAAAT
47312551 CCATATTTAT
Statistics
Matches: 47, Mismatches: 1, Indels: 10
0.81 0.02 0.17
Matches are distributed among these distances:
21 2 0.04
22 32 0.68
23 13 0.28
ACGTcount: A:0.26, C:0.26, G:0.01, T:0.46
Consensus pattern (23 bp):
TTCTCAAATTTCCTCTCAATTTC
Found at i:47312550 original size:11 final size:12
Alignment explanation
Indices: 47312476--47312550 Score: 72
Period size: 11 Copynumber: 6.7 Consensus size: 12
47312466 ACTAATCCTT
47312476 TCTCAAATTTCC
1 TCTCAAATTTCC
*
47312488 TCTC-AATTTCT
1 TCTCAAATTTCC
47312499 TCT-AAATTTCC
1 TCTCAAATTTCC
*
47312510 TCTC-AATTTGC
1 TCTCAAATTTCC
*
47312521 TCTTAAA-TTCC
1 TCTCAAATTTCC
47312532 T-TCAAAATTT-C
1 TCTC-AAATTTCC
47312543 TCTCAAAT
1 TCTCAAAT
47312551 CCATATTTAT
Statistics
Matches: 51, Mismatches: 6, Indels: 13
0.73 0.09 0.19
Matches are distributed among these distances:
10 1 0.02
11 40 0.78
12 10 0.20
ACGTcount: A:0.27, C:0.27, G:0.01, T:0.45
Consensus pattern (12 bp):
TCTCAAATTTCC
Found at i:47312574 original size:51 final size:51
Alignment explanation
Indices: 47312512--47312609 Score: 126
Period size: 51 Copynumber: 1.9 Consensus size: 51
47312502 AAATTTCCTC
*
47312512 TCAATTTGCTCTTAAATTCCT-TCAAAATTTCTCTCAAATCCATATTTATTT
1 TCAATTTGCTCTCAAATTCCTCT-AAAATTTCTCTCAAATCCATATTTATTT
* * * * *
47312563 TCAATTTGCTCTCAAGTTCCTCTTATATTTCTCTTAAATCCCTATTT
1 TCAATTTGCTCTCAAATTCCTCTAAAATTTCTCTCAAATCCATATTT
47312610 TTAAATAATT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
51 39 0.98
52 1 0.03
ACGTcount: A:0.26, C:0.23, G:0.03, T:0.48
Consensus pattern (51 bp):
TCAATTTGCTCTCAAATTCCTCTAAAATTTCTCTCAAATCCATATTTATTT
Found at i:47313763 original size:7 final size:7
Alignment explanation
Indices: 47313751--47313790 Score: 80
Period size: 7 Copynumber: 5.7 Consensus size: 7
47313741 TAGTCGATTG
47313751 GTATTTA
1 GTATTTA
47313758 GTATTTA
1 GTATTTA
47313765 GTATTTA
1 GTATTTA
47313772 GTATTTA
1 GTATTTA
47313779 GTATTTA
1 GTATTTA
47313786 GTATT
1 GTATT
47313791 ATGTATATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.28, C:0.00, G:0.15, T:0.57
Consensus pattern (7 bp):
GTATTTA
Found at i:47314438 original size:18 final size:18
Alignment explanation
Indices: 47314411--47314450 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
47314401 CAGGTGCGTT
* *
47314411 TCCTAGCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
*
47314429 TCCTAACCCTTATATGTT
1 TCCTAACCCTTATATGTA
47314447 TCCT
1 TCCT
47314451 TTTTCGAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.30, G:0.07, T:0.45
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:47315028 original size:21 final size:21
Alignment explanation
Indices: 47314985--47315690 Score: 590
Period size: 21 Copynumber: 32.5 Consensus size: 21
47314975 AATGCATAAT
*
47314985 TTAA-TTAACAAACCTTAAACCC
1 TTAACTTAA-AAACCCT-AACCC
*
47315007 TTAACCTAAAAACCCTAACCC
1 TTAACTTAAAAACCCTAACCC
47315028 TTAACTT-AAAACCACTAAACCC
1 TTAACTTAAAAACC-CT-AACCC
*
47315050 TTAACCTAAAAACCCTAACCCTAACCC
1 TTAA-CT-TAAA----AACCCTAACCC
*
47315077 TTAACTTAAAACCCCTAACCCC
1 TTAACTTAAAAACCCTAA-CCC
*
47315099 TTAACCTAAAAACCCTAACCC
1 TTAACTTAAAAACCCTAACCC
*
47315120 TTAACTTTAAAA-CCTAAACCC
1 TTAACTTAAAAACCCT-AACCC
*
47315141 TTAACCTAAAAACCCTAATCCTAAACCC
1 TTAACTTAAAAA--C----CCT-AACCC
**
47315169 TTAACCTT-AAAACCCTAACGA
1 TTAA-CTTAAAAACCCTAACCC
*
47315190 TTAACATT-AAAACCCTAACCAT
1 TTAAC-TTAAAAACCCTAACC-C
* *
47315212 TTAACCTAAAAACCCTAACTC
1 TTAACTTAAAAACCCTAACCC
*
47315233 TTAACTTTAAAACCCTAAACCC
1 TTAACTTAAAAACCCT-AACCC
*
47315255 TTAACTTAAAAACTCTAAACCC
1 TTAACTTAAAAACCCT-AACCC
* **
47315277 TTAAATTAAAAACATTAACCC
1 TTAACTTAAAAACCCTAACCC
* * *
47315298 TTAAATTAAAAACCCTAAACA
1 TTAACTTAAAAACCCTAACCC
* *
47315319 ATAACTTTAAAACCCTTAACCC
1 TTAACTTAAAAACCC-TAACCC
*
47315341 TTAACTTAAAAACCCTAAGCC
1 TTAACTTAAAAACCCTAACCC
* * * *
47315362 TAAACCCTAACCCTAAAACCCTAACCC
1 TTAA-CTTAA----AAACCCT-AACCC
* **
47315389 TTAACCT-AAAACCCTAAAGC
1 TTAACTTAAAAACCCTAACCC
47315409 TTAACTTAAAAACCCTAAACCC
1 TTAACTTAAAAACCCT-AACCC
47315431 TTAACTTAAAAACCCTAACCC
1 TTAACTTAAAAACCCTAACCC
*
47315452 TTAAATTAAAAACCCT-A---
1 TTAACTTAAAAACCCTAACCC
* *
47315469 --AACCTGAAAACCCTAACCC
1 TTAACTTAAAAACCCTAACCC
* * *
47315488 TTAACCTGAAAACCCTAAACC
1 TTAACTTAAAAACCCTAACCC
*
47315509 TTAACTAAAAAACCCTAAACCC
1 TTAACTTAAAAACCCT-AACCC
*
47315531 TTAACTTAAAAACCCTAACAC
1 TTAACTTAAAAACCCTAACCC
* *
47315552 TTAAATTAAAAACCCTAAACCA
1 TTAACTTAAAAACCCT-AACCC
*
47315574 TTAACCTAAAAACCCTAACCC
1 TTAACTTAAAAACCCTAACCC
* * * *
47315595 TTAACCTGAAAACCTTAAACC
1 TTAACTTAAAAACCCTAACCC
*
47315616 TTAACTTTAAAACCCTAGACCC
1 TTAACTTAAAAACCCTA-ACCC
47315638 TTAACTTAAAAACCCTAAACCC
1 TTAACTTAAAAACCCT-AACCC
47315660 TTAACTTAAAAACCCTAACCC
1 TTAACTTAAAAACCCTAACCC
47315681 TTAACTTAAA
1 TTAACTTAAA
47315691 TATAATTTGA
Statistics
Matches: 563, Mismatches: 78, Indels: 87
0.77 0.11 0.12
Matches are distributed among these distances:
15 11 0.02
16 1 0.00
20 20 0.04
21 259 0.46
22 208 0.37
23 6 0.01
25 6 0.01
26 11 0.02
27 16 0.03
28 19 0.03
29 6 0.01
ACGTcount: A:0.44, C:0.31, G:0.01, T:0.23
Consensus pattern (21 bp):
TTAACTTAAAAACCCTAACCC
Found at i:47315047 original size:43 final size:42
Alignment explanation
Indices: 47314994--47315690 Score: 598
Period size: 43 Copynumber: 16.0 Consensus size: 42
47314984 TTTAATTAAC
* *
47314994 AAACCTTAAACCCTTAACCTAAAAACCCTAACCCTTAACTTA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTA
*
47315036 AAACCACTAAACCCTTAACCTAAAAACCCTAACCCTAACCCTTAACTTA
1 AAACC-CTAAACCCTTAA-CT-TAAA----AACCCTAACCCTTAACTTA
* *
47315085 AAACCCCTAACCCCTTAACCTAAAAACCCTAACCCTTAACTTTA
1 AAA-CCCTAAACCCTTAACTTAAAAACCCTAACCCTTAAC-TTA
*
47315129 AAA-CCTAAACCCTTAACCTAAAAACCCTAATCCTAAACCCTTAACCTTA
1 AAACCCTAAACCCTTAACTTAAAAA--C----CCT-AACCCTTAA-CTTA
** * *
47315178 AAACCCT-AACGATTAACATT-AAAACCCTAACCATTTAACCTAA
1 AAACCCTAAACCCTTAAC-TTAAAAACCCTAACC-CTTAA-CTTA
* *
47315221 AAACCCT-AACTCTTAACTTTAAAACCCTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCT-AACCCTTAACTT-A
* * ** *
47315264 AAACTCTAAACCCTTAAATTAAAAACATTAACCCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTT-A
** *
47315307 AAACCCTAAA-CAATAACTTTAAAACCCTTAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCC-TAACCCTTAACTT-A
* *
47315350 AAACCCTAAGCCTAAACCC-TAACCCT-AAAACCCTAACCCTTAACCTA
1 AAA--C----CCTAAACCCTTAA-CTTAAAAACCCTAACCCTTAACTTA
*
47315397 AAACCCTAAA-GCTTAACTTAAAAACCCTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCT-AACCCTTAACTT-A
* * *
47315440 AAACCCT-AACCCTTAAATTAAAAACCCTAA-----ACCTGA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTA
* * * *
47315476 AAACCCT-AACCCTTAACCTGAAAACCCTAAACCTTAACTAAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACT-TA
* *
47315518 AAACCCTAAACCCTTAACTTAAAAACCCTAACACTTAAATTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTT-A
* * *
47315561 AAACCCTAAACCATTAACCTAAAAACCCTAACCCTTAACCTGA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAA-CTTA
* *
47315604 AAACCTTAAA-CCTTAACTTTAAAACCCTAGACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTA-ACCCTTAACTT-A
47315647 AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTA
47315689 AA
1 AA
47315691 TATAATTTGA
Statistics
Matches: 541, Mismatches: 64, Indels: 100
0.77 0.09 0.14
Matches are distributed among these distances:
36 28 0.05
37 3 0.01
40 3 0.01
41 20 0.04
42 88 0.16
43 237 0.44
44 47 0.09
45 5 0.01
47 8 0.01
48 16 0.03
49 76 0.14
50 10 0.02
ACGTcount: A:0.44, C:0.32, G:0.01, T:0.23
Consensus pattern (42 bp):
AAACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTA
Found at i:47315080 original size:27 final size:27
Alignment explanation
Indices: 47315045--47315120 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 27
47315035 AAAACCACTA
47315045 AACCCTTAACCTAAAAACCCTAACCCT
1 AACCCTTAACCTAAAAACCCTAACCCT
* *
47315072 AACCCTTAACTTAAAACCCCTAA--C-
1 AACCCTTAACCTAAAAACCCTAACCCT
47315096 --CCCTTAACCTAAAAACCCTAACCCT
1 AACCCTTAACCTAAAAACCCTAACCCT
47315121 TAACTTTAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
22 19 0.45
24 1 0.02
25 1 0.02
27 21 0.50
ACGTcount: A:0.39, C:0.41, G:0.00, T:0.20
Consensus pattern (27 bp):
AACCCTTAACCTAAAAACCCTAACCCT
Found at i:47315163 original size:28 final size:28
Alignment explanation
Indices: 47315132--47315186 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
47315122 AACTTTAAAA
47315132 CCTAAACCCTTAACCTAAAAACCCTAAT
1 CCTAAACCCTTAACCTAAAAACCCTAAT
*
47315160 CCTAAACCCTTAACCTTAAAACCCTAA
1 CCTAAACCCTTAACCTAAAAACCCTAA
47315187 CGATTAACAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.42, C:0.36, G:0.00, T:0.22
Consensus pattern (28 bp):
CCTAAACCCTTAACCTAAAAACCCTAAT
Found at i:47315187 original size:14 final size:15
Alignment explanation
Indices: 47315135--47315184 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
47315125 TTTAAAACCT
*
47315135 AAACCCTTAACCTAA
1 AAACCCTTAACCTTA
47315150 AAACCC-TAATCC-T-
1 AAACCCTTAA-CCTTA
47315163 AAACCCTTAACCTTA
1 AAACCCTTAACCTTA
47315178 AAACCCT
1 AAACCCT
47315185 AACGATTAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
13 8 0.27
14 7 0.23
15 15 0.50
ACGTcount: A:0.42, C:0.36, G:0.00, T:0.22
Consensus pattern (15 bp):
AAACCCTTAACCTTA
Found at i:47315394 original size:13 final size:13
Alignment explanation
Indices: 47315350--47315394 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
47315340 CTTAACTTAA
*
47315350 AAACCCTAAGCCT
1 AAACCCTAACCCT
47315363 AAACCCTAACCCT
1 AAACCCTAACCCT
47315376 AAAACCCTAACCCT
1 -AAACCCTAACCCT
*
47315390 TAACC
1 AAACC
47315395 TAAAACCCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 16 0.55
14 13 0.45
ACGTcount: A:0.40, C:0.42, G:0.02, T:0.16
Consensus pattern (13 bp):
AAACCCTAACCCT
Found at i:47315403 original size:14 final size:14
Alignment explanation
Indices: 47315349--47315389 Score: 66
Period size: 14 Copynumber: 3.0 Consensus size: 14
47315339 CCTTAACTTA
*
47315349 AAAACCCTAAGCCT
1 AAAACCCTAACCCT
47315363 -AAACCCTAACCCT
1 AAAACCCTAACCCT
47315376 AAAACCCTAACCCT
1 AAAACCCTAACCCT
47315390 TAACCTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 12 0.48
14 13 0.52
ACGTcount: A:0.41, C:0.41, G:0.02, T:0.15
Consensus pattern (14 bp):
AAAACCCTAACCCT
Found at i:47318809 original size:126 final size:125
Alignment explanation
Indices: 47318547--47319113 Score: 706
Period size: 126 Copynumber: 4.5 Consensus size: 125
47318537 CCAAACATGT
* *
47318547 TACTATAGCAAAAGCGCATCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCT
1 TACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCT
* * * * * *
47318612 AGAAGCG-ATTTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTTTCTAGGACC
66 TGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAGGACC
* * * *
47318671 AACTGTAGCAAAAGCGTGTCCACGAGGGCGCGATTTCACAAATTCTTCTCA-AATAGCATGCTGC
1 TACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATCCTGC
* * * **
47318735 TTGCAGCGTTGTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATAATTTTTTTAGGACC
65 TTGAAGCGTT-TTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAGGACC
* * * * *
47318797 TACTGTAGCAAAAGTGCATCCACGTGGGCCCGACTTCACAAATTCTTCTTATAAAGCATCCTGCT
1 TACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCT
* * *
47318862 TGAAGCGTTTTTTAAACTATTTGCTCAAAAACGTTAACTCGAAATTATTTCTTCCAGGACC
66 TGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTT-TTCCAGGACC
* * * * * * *
47318923 AACTGTAGTAAAAACGCGTCCATGAGGGCGCGATTTCACAAATTTTTCTCACAAAGCATCCTGCT
1 TACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCT
* * * *
47318988 TGAAGCATTTTTTAAACTATTTGCTAAGAAACGTTAAGTCAAAATTATTTTTCCAGGACC
66 TGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAGGACC
* * * * * * *
47319048 TATTGTAGCAAAAGCGCGTACACGTGGGCGCGACTTCAAAAATCCTTCTGATAAATCATCCTGCT
1 TACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCT
47319113 T
66 T
47319114 TGATTTTATC
Statistics
Matches: 377, Mismatches: 61, Indels: 9
0.84 0.14 0.02
Matches are distributed among these distances:
123 2 0.01
124 61 0.16
125 98 0.26
126 214 0.57
127 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (125 bp):
TACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCT
TGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAGGACC
Found at i:47319048 original size:251 final size:250
Alignment explanation
Indices: 47318547--47319113 Score: 787
Period size: 251 Copynumber: 2.3 Consensus size: 250
47318537 CCAAACATGT
* *
47318547 TACTATAGCAAAAGCGCATCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCT
1 TACTGTAGCAAAAGCGCATCCACGTGGGCGCGACTTCACAAATTCTTCTCATAAAGCATCCTGCT
* * * * *
47318612 AGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTTTCTAGGACCAACTGT
66 TGAAGCGATTTTAAACTATTTGCTCAAAAACGTCAACTCGAAATTATTTTTCCAGGACCAACTGT
* * * *
47318677 AGCAAAAGCGTGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATGCTGCTTGCAGC
131 AGCAAAAACGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGCTTGAAGC
* * * **
47318742 GTTGTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATAATTTTTTTAGGACC
196 ATTGTTTTAAACTATTTGCTAAGAAACGTCAACTCAAAATAATTTTTCCAGGACC
* * *
47318797 TACTGTAGCAAAAGTGCATCCACGTGGGCCCGACTTCACAAATTCTTCTTATAAAGCATCCTGCT
1 TACTGTAGCAAAAGCGCATCCACGTGGGCGCGACTTCACAAATTCTTCTCATAAAGCATCCTGCT
* *
47318862 TGAAGCGTTTTTTAAACTATTTGCTCAAAAACGTTAACTCGAAATTATTTCTTCCAGGACCAACT
66 TGAAGCG-ATTTTAAACTATTTGCTCAAAAACGTCAACTCGAAATTATTT-TTCCAGGACCAACT
* * *
47318927 GTAGTAAAAACGCGTCCATGAGGGCGCGATTTCACAAATTTTTCTCACAA-AGCATCCTGCTTGA
129 GTAGCAAAAACGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCA-AATAGCATCCTGCTTGA
* * *
47318991 AGCATT-TTTTAAACTATTTGCTAAGAAACGTTAAGTCAAAATTATTTTTCCAGGACC
193 AGCATTGTTTTAAACTATTTGCTAAGAAACGTCAACTCAAAATAATTTTTCCAGGACC
* * * * * * *
47319048 TATTGTAGCAAAAGCGCGTACACGTGGGCGCGACTTCAAAAATCCTTCTGATAAATCATCCTGCT
1 TACTGTAGCAAAAGCGCATCCACGTGGGCGCGACTTCACAAATTCTTCTCATAAAGCATCCTGCT
47319113 T
66 T
47319114 TGATTTTATC
Statistics
Matches: 278, Mismatches: 36, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
250 66 0.24
251 138 0.50
252 72 0.26
253 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (250 bp):
TACTGTAGCAAAAGCGCATCCACGTGGGCGCGACTTCACAAATTCTTCTCATAAAGCATCCTGCT
TGAAGCGATTTTAAACTATTTGCTCAAAAACGTCAACTCGAAATTATTTTTCCAGGACCAACTGT
AGCAAAAACGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGCTTGAAGC
ATTGTTTTAAACTATTTGCTAAGAAACGTCAACTCAAAATAATTTTTCCAGGACC
Found at i:47321196 original size:17 final size:17
Alignment explanation
Indices: 47321176--47321208 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
47321166 ATTATATACT
47321176 TTATATTATAATATTTG
1 TTATATTATAATATTTG
47321193 TTATATTATAATATTT
1 TTATATTATAATATTT
47321209 AGTAACTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (17 bp):
TTATATTATAATATTTG
Found at i:47322036 original size:21 final size:21
Alignment explanation
Indices: 47322012--47322053 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
47322002 CAAAAGTATA
47322012 ATACTAATTTTTTAAAAAATT
1 ATACTAATTTTTTAAAAAATT
47322033 ATACTAATTTTTTAAAAAATT
1 ATACTAATTTTTTAAAAAATT
47322054 TAAGGATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (21 bp):
ATACTAATTTTTTAAAAAATT
Found at i:47326519 original size:22 final size:21
Alignment explanation
Indices: 47326484--47326560 Score: 68
Period size: 19 Copynumber: 3.7 Consensus size: 21
47326474 AAAAGGTATC
* *
47326484 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
47326505 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* * *
47326528 TGCATATCATA--TCTAATAT
1 TACAAATCATATCTCTAAGAT
*
47326547 TACATATCATATCT
1 TACAAATCATATCT
47326561 AAGATTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
19 17 0.37
21 4 0.09
22 15 0.33
23 10 0.22
ACGTcount: A:0.42, C:0.17, G:0.04, T:0.38
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:47326527 original size:23 final size:22
Alignment explanation
Indices: 47326484--47326541 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
47326474 AAAAGGTATC
* *
47326484 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
47326505 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
47326528 TGCATATCATATCT
1 TACAAATCATATCT
47326542 AATATTACAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:47326552 original size:19 final size:19
Alignment explanation
Indices: 47326520--47326573 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
47326510 AATCATATCT
47326520 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
* *
47326539 TCTAATATTACATATCATA
1 TCTAAGATTGCATATCATA
47326558 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
47326574 CTTGAAGTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:47326811 original size:22 final size:22
Alignment explanation
Indices: 47326783--47326826 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
47326773 TTTGATGTTA
47326783 AACTTGTAAATTTAAAATTCAG
1 AACTTGTAAATTTAAAATTCAG
47326805 AACTTGTAAATTTAAAATTCAG
1 AACTTGTAAATTTAAAATTCAG
47326827 GATAATGCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.36
Consensus pattern (22 bp):
AACTTGTAAATTTAAAATTCAG
Found at i:47329969 original size:23 final size:25
Alignment explanation
Indices: 47329935--47329988 Score: 69
Period size: 24 Copynumber: 2.2 Consensus size: 25
47329925 AACACTAACC
47329935 ATAAAAATAGAA-GTACAAATAAAA-
1 ATAAAAATAGAACG-ACAAATAAAAG
*
47329959 ATAAAAA-AGAACGATAAATAAAAG
1 ATAAAAATAGAACGACAAATAAAAG
47329983 ATAAAA
1 ATAAAA
47329989 TTAGGAGGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 13 0.48
24 14 0.52
ACGTcount: A:0.72, C:0.04, G:0.09, T:0.15
Consensus pattern (25 bp):
ATAAAAATAGAACGACAAATAAAAG
Found at i:47335284 original size:25 final size:26
Alignment explanation
Indices: 47335242--47335310 Score: 83
Period size: 25 Copynumber: 2.8 Consensus size: 26
47335232 TTGCTCATAC
*
47335242 GAGCTGCA-AACAGTAAGCTCT-TCA
1 GAGCTGAATAACAGTAAGCTCTCTCA
*
47335266 GAGCTGAATAACAGTAAGCT-TCTCC
1 GAGCTGAATAACAGTAAGCTCTCTCA
*
47335291 GAGCTGAATAA-TGTAAGCTC
1 GAGCTGAATAACAGTAAGCTC
47335311 ATACGAGCTG
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
24 15 0.38
25 24 0.62
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (26 bp):
GAGCTGAATAACAGTAAGCTCTCTCA
Found at i:47335317 original size:24 final size:24
Alignment explanation
Indices: 47335234--47335347 Score: 76
Period size: 25 Copynumber: 4.7 Consensus size: 24
47335224 GTACATGTTT
47335234 GCTCATACGAGCTGCAA-ACA-GTAA
1 GCTCATACGAGCTG-AATA-ATGTAA
* *
47335258 GCTC-TTCAGAGCTGAATAACAGTAA
1 GCTCATAC-GAGCTGAATAA-TGTAA
*
47335283 GCTTC-TCCGAGCTGAATAATGTAA
1 GC-TCATACGAGCTGAATAATGTAA
*
47335307 GCTCATACGAGCTGAGT-ATCGGTAA
1 GCTCATACGAGCTGAATAAT--GTAA
* *
47335332 GCTCATAAGAGTTGAA
1 GCTCATACGAGCTGAA
47335348 ATTGGTAACC
Statistics
Matches: 74, Mismatches: 8, Indels: 15
0.76 0.08 0.15
Matches are distributed among these distances:
23 9 0.12
24 27 0.36
25 34 0.46
26 4 0.05
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.24
Consensus pattern (24 bp):
GCTCATACGAGCTGAATAATGTAA
Found at i:47344955 original size:20 final size:19
Alignment explanation
Indices: 47344926--47344970 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
47344916 ATTGCAATCT
*
47344926 AAAAATTAAATTAAAAACA
1 AAAAATTAAAATAAAAACA
*
47344945 AAAATATTAAAATAAAAATA
1 AAAA-ATTAAAATAAAAACA
47344965 AAAAAT
1 AAAAAT
47344971 AACTAAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (19 bp):
AAAAATTAAAATAAAAACA
Found at i:47345836 original size:51 final size:51
Alignment explanation
Indices: 47345760--47345861 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
47345750 AACCGAAAGA
47345760 AATAAAGAAACTCGTGATAAATTTCTAAGAATTCAATTGGAAATCTTCAAT
1 AATAAAGAAACTCGTGATAAATTTCTAAGAATTCAATTGGAAATCTTCAAT
*
47345811 AATAAAGAAACTCGTGATAACTTTCTAAGAATTCAATTGGAAATCTTCAAT
1 AATAAAGAAACTCGTGATAAATTTCTAAGAATTCAATTGGAAATCTTCAAT
47345862 CTTGACGGAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.44, C:0.13, G:0.12, T:0.31
Consensus pattern (51 bp):
AATAAAGAAACTCGTGATAAATTTCTAAGAATTCAATTGGAAATCTTCAAT
Found at i:47346747 original size:30 final size:31
Alignment explanation
Indices: 47346713--47346779 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 31
47346703 TTTTAAAATA
* *
47346713 TTAAAAAATATTTT-TATACTTTTTT-ACTTT
1 TTAAAAAAT-TTTTATAAACTTTTTTGAATTT
* *
47346743 TTAAATAATTTTTATAAATTTTTTTGAATTT
1 TTAAAAAATTTTTATAAACTTTTTTGAATTT
47346774 TTAAAA
1 TTAAAA
47346780 TTTTTAAATA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
29 4 0.13
30 17 0.57
31 9 0.30
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.58
Consensus pattern (31 bp):
TTAAAAAATTTTTATAAACTTTTTTGAATTT
Found at i:47348542 original size:6 final size:7
Alignment explanation
Indices: 47348532--47348568 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
47348522 GGAATGTAAA
47348532 ATAATA-
1 ATAATAC
47348538 ATAATA-
1 ATAATAC
47348544 ATAATAC
1 ATAATAC
47348551 ATAATAC
1 ATAATAC
*
47348558 ATAATAG
1 ATAATAC
47348565 ATAA
1 ATAA
47348569 GTAAATACAA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
6 12 0.41
7 17 0.59
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.30
Consensus pattern (7 bp):
ATAATAC
Found at i:47349047 original size:3 final size:3
Alignment explanation
Indices: 47349039--47349064 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
47349029 AAATTAGTTA
47349039 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
47349065 AAGGATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:47352154 original size:24 final size:24
Alignment explanation
Indices: 47352110--47352155 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
47352100 CTTGAAACCA
* *
47352110 TTTCCGCAGCTCCTTTCTTCACCC
1 TTTCCACAGCTCATTTCTTCACCC
47352134 TTTCCACAGCTCATCTT-TTCAC
1 TTTCCACAGCTCAT-TTCTTCAC
47352156 TCTCTTCACC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 17 0.89
25 2 0.11
ACGTcount: A:0.13, C:0.41, G:0.07, T:0.39
Consensus pattern (24 bp):
TTTCCACAGCTCATTTCTTCACCC
Found at i:47352197 original size:14 final size:14
Alignment explanation
Indices: 47352178--47352207 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
47352168 ACCGATTGCA
47352178 GCCTCATCATCTCT
1 GCCTCATCATCTCT
*
47352192 GCCTCATCTTCTCT
1 GCCTCATCATCTCT
47352206 GC
1 GC
47352208 TAGTTCACCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.10, C:0.43, G:0.10, T:0.37
Consensus pattern (14 bp):
GCCTCATCATCTCT
Found at i:47353354 original size:20 final size:20
Alignment explanation
Indices: 47353329--47353368 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
47353319 AATATTTTCC
*
47353329 AGTAAATCATTTTACAAAAA
1 AGTAAAACATTTTACAAAAA
*
47353349 AGTAAAACATTTTCCAAAAA
1 AGTAAAACATTTTACAAAAA
47353369 TCGTTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.55, C:0.12, G:0.05, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAAAAA
Found at i:47353760 original size:23 final size:25
Alignment explanation
Indices: 47353727--47353772 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
47353717 ACAAAAGTTA
47353727 AATACATAAATACATTA-AATTAAC
1 AATACATAAATACATTACAATTAAC
*
47353751 AATAC-TAAATGCATTACAATTA
1 AATACATAAATACATTACAATTA
47353773 TTTATCATGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.54, C:0.13, G:0.02, T:0.30
Consensus pattern (25 bp):
AATACATAAATACATTACAATTAAC
Found at i:47354810 original size:19 final size:19
Alignment explanation
Indices: 47354788--47354826 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
47354778 CGTCTTTTGA
47354788 AACTT-TTAGTGATTTTAGG
1 AACTTATTAGT-ATTTTAGG
*
47354807 AACTTATTAGTTTTTTAGG
1 AACTTATTAGTATTTTAGG
47354826 A
1 A
47354827 TTGTATTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.28, C:0.05, G:0.18, T:0.49
Consensus pattern (19 bp):
AACTTATTAGTATTTTAGG
Found at i:47362448 original size:20 final size:20
Alignment explanation
Indices: 47362425--47362471 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
47362415 AACTATTCAA
** *
47362425 ATAATATTATTTGAATATTT
1 ATAATATTAAATGAATAATT
47362445 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
47362465 AT-ATATT
1 ATAATATT
47362472 TTTTAAAGGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 5 0.21
20 19 0.79
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:47363529 original size:16 final size:16
Alignment explanation
Indices: 47363508--47363561 Score: 58
Period size: 16 Copynumber: 3.5 Consensus size: 16
47363498 GAGCTTTGGG
47363508 GCAAAAGTGTAAATGT
1 GCAAAAGTGTAAATGT
* * *
47363524 GCAAAAGT-T-TAGGG
1 GCAAAAGTGTAAATGT
*
47363538 GTAAAAGTGTAAATGT
1 GCAAAAGTGTAAATGT
47363554 GCAAAAGT
1 GCAAAAGT
47363562 TTGAGTCAAG
Statistics
Matches: 28, Mismatches: 8, Indels: 4
0.70 0.20 0.10
Matches are distributed among these distances:
14 9 0.32
15 2 0.07
16 17 0.61
ACGTcount: A:0.43, C:0.06, G:0.28, T:0.24
Consensus pattern (16 bp):
GCAAAAGTGTAAATGT
Found at i:47363546 original size:30 final size:30
Alignment explanation
Indices: 47363505--47363563 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
47363495 TCCGAGCTTT
47363505 GGGGCAAAAGTGTAAATGTGCAAAAGTTTA
1 GGGGCAAAAGTGTAAATGTGCAAAAGTTTA
*
47363535 GGGGTAAAAGTGTAAATGTGCAAAAGTTT
1 GGGGCAAAAGTGTAAATGTGCAAAAGTTT
47363564 GAGTCAAGGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.39, C:0.05, G:0.31, T:0.25
Consensus pattern (30 bp):
GGGGCAAAAGTGTAAATGTGCAAAAGTTTA
Found at i:47364251 original size:50 final size:50
Alignment explanation
Indices: 47364027--47364363 Score: 381
Period size: 50 Copynumber: 6.7 Consensus size: 50
47364017 TATCGATGAA
* * * * *
47364027 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATA-ATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAA-ACTTGAT
* * * * * * * *
47364078 CACATGTGTAGTACTAAGTGAATGCTACAATGTGTACCG-AGAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTA-AAAC-TTGAT
* * * * *** *
47364129 CACATGTGTAGTATTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGAT
* *
47364180 CACGTGTGTAGTACTAAGTGAAGGCTACTACGTGAACCGTAAAACTAGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
*
47364230 CACGTATGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
* *
47364280 CACGTGTGAAGTACTATGTGAAGGCTACTACGTGAACTGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
47364330 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
47364364 TATCGAATGA
Statistics
Matches: 244, Mismatches: 37, Indels: 11
0.84 0.13 0.04
Matches are distributed among these distances:
49 1 0.00
50 135 0.55
51 105 0.43
52 2 0.01
53 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (50 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
Found at i:47364309 original size:100 final size:100
Alignment explanation
Indices: 47364027--47364369 Score: 429
Period size: 100 Copynumber: 3.4 Consensus size: 100
47364017 TATCGATGAA
* * *
47364027 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAA-AATGGTCACGTGTGTAGTAC
* * * * * *
47364092 TAAGTGAATGCTACAATGTGTACCG-AGAAGCTTTGGT
65 TAAGTGAAGGCTACTACGTGAACCGTA-AAAC-TTGAT
* * * *
47364129 CACATGTGTAGTATTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACGTGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAA-AATGGTCACGTGTGTAGTAC
*
47364194 TAAGTGAAGGCTACTACGTGAACCGTAAAACTAGAT
65 TAAGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
* * * * *
47364230 CACGTATGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGATCACGTGTGAAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAAA-ATGGTCACGTGTGTAGTAC
* *
47364294 TATGTGAAGGCTACTACGTGAACTGTAAAACTTGAT
65 TAAGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
*
47364330 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGA
47364370 ATGATAAAAG
Statistics
Matches: 211, Mismatches: 27, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
100 89 0.42
101 37 0.18
102 84 0.40
103 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (100 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAAAATGGTCACGTGTGTAGTACT
AAGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
Found at i:47367543 original size:9 final size:9
Alignment explanation
Indices: 47367531--47367651 Score: 53
Period size: 9 Copynumber: 13.8 Consensus size: 9
47367521 AAAAGATTTT
*
47367531 TTTAATATA
1 TTTAAAATA
47367540 TTTAAAAT-
1 TTTAAAATA
*
47367548 TTTAAAAAA
1 TTTAAAATA
*
47367557 TTTAAAAAA
1 TTTAAAATA
47367566 TTT-AAATA
1 TTTAAAATA
*
47367574 TATTAAAAAA
1 T-TTAAAATA
* *
47367584 GGTT-AAGTA
1 -TTTAAAATA
47367593 --TAACCAAT-
1 TTTAA--AATA
47367601 TTTAAAAT-
1 TTTAAAATA
47367609 TTTAAAATA
1 TTTAAAATA
*
47367618 TTTAATATA
1 TTTAAAATA
47367627 TTTTAAAA-A
1 -TTTAAAATA
*
47367636 ATT-AAATA
1 TTTAAAATA
47367644 TATTAAAA
1 T-TTAAAA
47367652 AAATGTTAAG
Statistics
Matches: 86, Mismatches: 12, Indels: 27
0.69 0.10 0.22
Matches are distributed among these distances:
6 1 0.01
7 4 0.05
8 26 0.30
9 37 0.43
10 18 0.21
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (9 bp):
TTTAAAATA
Found at i:47367552 original size:17 final size:16
Alignment explanation
Indices: 47367530--47367581 Score: 50
Period size: 17 Copynumber: 3.0 Consensus size: 16
47367520 AAAAAGATTT
47367530 TTTTAATATATTTAAAA
1 TTTTAA-ATATTTAAAA
*
47367547 TTTTAAAAAATTTAAAAA
1 TTTT-AAATATTT-AAAA
*
47367565 ATTTAAATATATTAAAA
1 TTTTAAATAT-TTAAAA
47367582 AAGGTTAAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
17 18 0.62
18 11 0.38
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TTTTAAATATTTAAAA
Found at i:47367582 original size:19 final size:19
Alignment explanation
Indices: 47367534--47367665 Score: 57
Period size: 19 Copynumber: 7.3 Consensus size: 19
47367524 AGATTTTTTT
* *
47367534 AATATATT-TAAAATTTTA
1 AATATATTAAAAAAATTTA
* *
47367552 AA-AAATTTAAAAAATTTA
1 AATATATTAAAAAAATTTA
**
47367570 AATATATTAAAAAAGGTT-
1 AATATATTAAAAAAATTTA
* ** *
47367588 AA-GTA-TAACCAATTTTA
1 AATATATTAAAAAAATTTA
* *
47367605 AA-AT-TTTAAAATATTT-
1 AATATATTAAAAAAATTTA
*
47367621 AATATATTTTAAAAAA-TTA
1 AATATA-TTAAAAAAATTTA
47367640 AATATATTAAAAAAATGTTA
1 AATATATTAAAAAAAT-TTA
*
47367660 AGTATA
1 AATATA
47367666 ACTAATTTTA
Statistics
Matches: 83, Mismatches: 21, Indels: 18
0.68 0.17 0.15
Matches are distributed among these distances:
16 9 0.11
17 17 0.20
18 24 0.29
19 25 0.30
20 8 0.10
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.39
Consensus pattern (19 bp):
AATATATTAAAAAAATTTA
Found at i:47367673 original size:71 final size:71
Alignment explanation
Indices: 47367530--47367702 Score: 235
Period size: 71 Copynumber: 2.4 Consensus size: 71
47367520 AAAAAGATTT
* * *
47367530 TTTTAATATATTTAAAAT-TTTAA-AAAATTTAAAAAATTTAAATATATTAAAAAAGGTTAAGTA
1 TTTTAAAAT-TTTAAAATATTTAATATATTTTAAAAAATTTAAATATATTAAAAAAGGTTAAGTA
47367593 TAACCAA
65 TAACCAA
*
47367600 TTTTAAAATTTTAAAATATTTAATATATTTTAAAAAA-TTAAATATATTAAAAAAATGTTAAGTA
1 TTTTAAAATTTTAAAATATTTAATATATTTTAAAAAATTTAAATATATT-AAAAAAGGTTAAGTA
*
47367664 TAACTAA
65 TAACCAA
* *
47367671 TTTTAAAATTTTAATATATTCAATATAGTTTT
1 TTTTAAAATTTTAAAATATTTAATATA-TTTT
47367703 TTAAAATATA
Statistics
Matches: 92, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
69 8 0.09
70 24 0.26
71 56 0.61
72 4 0.04
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.43
Consensus pattern (71 bp):
TTTTAAAATTTTAAAATATTTAATATATTTTAAAAAATTTAAATATATTAAAAAAGGTTAAGTAT
AACCAA
Found at i:47367744 original size:20 final size:20
Alignment explanation
Indices: 47367679--47367748 Score: 65
Period size: 20 Copynumber: 3.4 Consensus size: 20
47367669 AATTTTAAAA
*
47367679 TTTTAATATATTCAATATAGTT
1 TTTTAATATATTTAATATA--T
47367701 TTTTAAAATATATTTTAA-A-A-
1 TTTT--AATATA-TTTAATATAT
47367721 TTTTAATATATTTAATATAT
1 TTTTAATATATTTAATATAT
47367741 TTTTAATA
1 TTTTAATA
47367749 GGTAAAGAGA
Statistics
Matches: 41, Mismatches: 1, Indels: 14
0.73 0.02 0.25
Matches are distributed among these distances:
17 5 0.12
18 7 0.17
19 1 0.02
20 12 0.29
22 4 0.10
23 1 0.02
24 7 0.17
25 4 0.10
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (20 bp):
TTTTAATATATTTAATATAT
Found at i:47367859 original size:90 final size:91
Alignment explanation
Indices: 47367768--47367959 Score: 239
Period size: 90 Copynumber: 2.1 Consensus size: 91
47367758 AAAAAATATT
* * * * *
47367768 TTTTAATATATTTAAAATTTTAAAA-A-ATTAAAAAATTTTTAA-ATTTTAAATATGTTAAAGAA
1 TTTTAATATATTTAAAATATTAAAATATATTAAAAAA-TATTAACATTTTAAACATATTAAAAAA
*
47367830 AATGTTGAGTA-TAACCAATTTTAAAA
65 AATGTTAAGTATTAACCAATTTTAAAA
* * * * *
47367856 TTTTAATATACTTAATATATTAAAATATATTAAAATATATTAACATTTTGAACCTATTAAAAAAA
1 TTTTAATATATTTAAAATATTAAAATATATTAAAAAATATTAACATTTTAAACATATTAAAAAAA
*
47367921 ATTTTAAGTATTAACCAATTTTAAAA
66 ATGTTAAGTATTAACCAATTTTAAAA
47367947 TTTTAATATATTT
1 TTTTAATATATTT
47367960 TTTAGTAGGT
Statistics
Matches: 87, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
88 22 0.25
89 6 0.07
90 32 0.37
91 27 0.31
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (91 bp):
TTTTAATATATTTAAAATATTAAAATATATTAAAAAATATTAACATTTTAAACATATTAAAAAAA
ATGTTAAGTATTAACCAATTTTAAAA
Found at i:47367895 original size:12 final size:10
Alignment explanation
Indices: 47367869--47367898 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
47367859 TAATATACTT
47367869 AATATATTAA
1 AATATATTAA
47367879 AATATATTAA
1 AATATATTAA
47367889 AATATATTAA
1 AATATATTAA
47367899 CATTTTGAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (10 bp):
AATATATTAA
Found at i:47372304 original size:6 final size:6
Alignment explanation
Indices: 47372293--47372321 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
47372283 GTTTTTAATG
47372293 TGGCAC TGGCAC TGGCAC TGGCAC TGGCA
1 TGGCAC TGGCAC TGGCAC TGGCAC TGGCA
47372322 GGATGAGGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.31, G:0.34, T:0.17
Consensus pattern (6 bp):
TGGCAC
Found at i:47407746 original size:45 final size:45
Alignment explanation
Indices: 47407691--47407777 Score: 131
Period size: 45 Copynumber: 1.9 Consensus size: 45
47407681 ACAATGAATA
*
47407691 GAAATAGAGAAATGGAAA-AATTTAGAAATGATTATGGTTTTCTTT
1 GAAATAGAGAAAT-GAAATAATTTAGAAATGAATATGGTTTTCTTT
* *
47407736 GAAATTGAGAAATGAAATAATTTAGAAATGAATGTGGTTTTC
1 GAAATAGAGAAATGAAATAATTTAGAAATGAATATGGTTTTC
47407778 ACAAAATGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
44 4 0.11
45 34 0.89
ACGTcount: A:0.43, C:0.02, G:0.21, T:0.34
Consensus pattern (45 bp):
GAAATAGAGAAATGAAATAATTTAGAAATGAATATGGTTTTCTTT
Found at i:47407791 original size:6 final size:6
Alignment explanation
Indices: 47407780--47407823 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
47407770 TGGTTTTCAC
* * *
47407780 AAAATG AAAATG GAAATG GAAATG GAAATG AAAATG AGAAATG A
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG A-AAATG A
47407824 TTTATGTGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
6 29 0.83
7 6 0.17
ACGTcount: A:0.59, C:0.00, G:0.25, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:47407802 original size:12 final size:12
Alignment explanation
Indices: 47407781--47407823 Score: 68
Period size: 12 Copynumber: 3.5 Consensus size: 12
47407771 GGTTTTCACA
47407781 AAATGAAAATGG
1 AAATGAAAATGG
*
47407793 AAATGGAAATGG
1 AAATGAAAATGG
47407805 AAATGAAAATGAG
1 AAATGAAAATG-G
47407818 AAATGA
1 AAATGA
47407824 TTTATGTGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
12 21 0.75
13 7 0.25
ACGTcount: A:0.58, C:0.00, G:0.26, T:0.16
Consensus pattern (12 bp):
AAATGAAAATGG
Found at i:47407808 original size:18 final size:19
Alignment explanation
Indices: 47407781--47407823 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
47407771 GGTTTTCACA
*
47407781 AAATGAAAATGGAAATG-G
1 AAATGAAAATGAAAATGAG
*
47407799 AAATGGAAATGAAAATGAG
1 AAATGAAAATGAAAATGAG
47407818 AAATGA
1 AAATGA
47407824 TTTATGTGCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.58, C:0.00, G:0.26, T:0.16
Consensus pattern (19 bp):
AAATGAAAATGAAAATGAG
Found at i:47420032 original size:15 final size:15
Alignment explanation
Indices: 47419995--47420040 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
47419985 AGTTGTAATG
47419995 ATCCAAACTCGAAAAA
1 ATCCAAACTC-AAAAA
47420011 ATCCAAACTCAAAAA
1 ATCCAAACTCAAAAA
* * *
47420026 CTTCAAACTTAAAAA
1 ATCCAAACTCAAAAA
47420041 GCTTGAACTC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 17 0.63
16 10 0.37
ACGTcount: A:0.57, C:0.24, G:0.02, T:0.17
Consensus pattern (15 bp):
ATCCAAACTCAAAAA
Found at i:47436425 original size:44 final size:44
Alignment explanation
Indices: 47436362--47436700 Score: 282
Period size: 44 Copynumber: 7.8 Consensus size: 44
47436352 ACTAGATGCG
* * ** *
47436362 ATCTGCTCTACTGGAACTTCAAAGAGATAAGATCTATTACTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATTACTTCA
* * **
47436406 ATCTGCTCCACTACAACTTCAGGGAGATAGGATTCT-TGGCTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TCTATTACTTCA
* * *
47436450 ATCTGCTCCACTGTAACTTCAGGGAGATAATAT-T-TTCCATCTTCG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATT--A-CTTCA
* * * *
47436495 ATCTGCCCCACTGCAACTTCAGGGGGATAAGACCTGCTTAC-TCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCT-ATTACTTCA
* * * * *
47436539 GTCTGCTCCGCTGCAACTTCAGGGAGATAAGA-C--TTAATGCG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATTACTTCA
* * * *
47436580 AT-TCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTA
1 ATCT-GCTCCACTGCAACTTCAGGGAGATAAGATCTATTACTTCA
* * * *
47436624 ATCCGCTCCACTACAACTTTAGGGAGATAGGAT-TATTAGCTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATTA-CTTCA
*
47436668 ATCTGCTCCACTGTAACTTCAGGGAGATAAGAT
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
47436701 TTGCCCTTTT
Statistics
Matches: 230, Mismatches: 51, Indels: 28
0.74 0.17 0.09
Matches are distributed among these distances:
40 4 0.02
41 26 0.11
42 3 0.01
43 7 0.03
44 150 0.65
45 36 0.16
46 2 0.01
48 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (44 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATTACTTCA
Found at i:47436518 original size:89 final size:88
Alignment explanation
Indices: 47436406--47436568 Score: 211
Period size: 89 Copynumber: 1.8 Consensus size: 88
47436396 TATTACTTTA
* * * * *
47436406 ATCTGCTCCACTACAACTTCAGGGAGATAGGA-TTCTTGGCTTCAATCTGCTCCACTGTAACTTC
1 ATCTGCCCCACTACAACTTCAGGGAGATAAGACTGCTT-AC-TCAATCTGCTCCACTGCAACTTC
47436470 AGGGAGATAATATTTTCCATCTTCG
64 AGGGAGATAATATTTTCCATCTTCG
* * * *
47436495 ATCTGCCCCACTGCAACTTCAGGGGGATAAGACCTGCTTACTCAGTCTGCTCCGCTGCAACTTCA
1 ATCTGCCCCACTACAACTTCAGGGAGATAAGA-CTGCTTACTCAATCTGCTCCACTGCAACTTCA
47436560 GGGAGATAA
65 GGGAGATAA
47436569 GACTTAATGC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
89 58 0.92
90 1 0.02
91 4 0.06
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (88 bp):
ATCTGCCCCACTACAACTTCAGGGAGATAAGACTGCTTACTCAATCTGCTCCACTGCAACTTCAG
GGAGATAATATTTTCCATCTTCG
Found at i:47438160 original size:10 final size:11
Alignment explanation
Indices: 47438139--47438163 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
47438129 TCATTTTTAC
47438139 TTTTTCATTTT
1 TTTTTCATTTT
47438150 TTTTTCATTTT
1 TTTTTCATTTT
47438161 TTT
1 TTT
47438164 GGACTCAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTTCATTTT
Found at i:47439085 original size:29 final size:28
Alignment explanation
Indices: 47439027--47439108 Score: 92
Period size: 28 Copynumber: 2.9 Consensus size: 28
47439017 GCTTTTCATA
*** *
47439027 TTTTTATTTTGACTTTGATGGATTTCTT
1 TTTTTATTTTGACTTTGATTTTTTTATT
47439055 TTTTTACTTTTGACTTTGATTTTTTTATT
1 TTTTTA-TTTTGACTTTGATTTTTTTATT
* **
47439084 TTTTCATTTTGTTTTTGATTTTTTT
1 TTTTTATTTTGACTTTGATTTTTTT
47439109 TTAGGATTGA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
28 23 0.50
29 23 0.50
ACGTcount: A:0.12, C:0.06, G:0.10, T:0.72
Consensus pattern (28 bp):
TTTTTATTTTGACTTTGATTTTTTTATT
Found at i:47443185 original size:10 final size:10
Alignment explanation
Indices: 47443170--47443199 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
47443160 TAAAATAATT
47443170 CATTTCAAAA
1 CATTTCAAAA
47443180 CATTTCAAAA
1 CATTTCAAAA
47443190 CATTTCAAAA
1 CATTTCAAAA
47443200 ATCATAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (10 bp):
CATTTCAAAA
Found at i:47443317 original size:21 final size:21
Alignment explanation
Indices: 47443293--47443332 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
47443283 GGACTATATT
47443293 GAAAACACTT-GAAAAATTTAG
1 GAAAA-ACTTAGAAAAATTTAG
*
47443314 GAAAAATTTAGAAAAATTT
1 GAAAAACTTAGAAAAATTT
47443333 TAATTGCAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.55, C:0.05, G:0.12, T:0.28
Consensus pattern (21 bp):
GAAAAACTTAGAAAAATTTAG
Found at i:47443334 original size:11 final size:11
Alignment explanation
Indices: 47443303--47443332 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
47443293 GAAAACACTT
47443303 GAAAAATTTAG
1 GAAAAATTTAG
47443314 GAAAAATTTA-
1 GAAAAATTTAG
47443324 GAAAAATTT
1 GAAAAATTT
47443333 TAATTGCAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.57, C:0.00, G:0.13, T:0.30
Consensus pattern (11 bp):
GAAAAATTTAG
Found at i:47447103 original size:18 final size:17
Alignment explanation
Indices: 47447082--47447116 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
47447072 TTATTATTAA
*
47447082 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
47447100 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
47447117 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:47447280 original size:120 final size:120
Alignment explanation
Indices: 47447062--47447674 Score: 967
Period size: 120 Copynumber: 5.1 Consensus size: 120
47447052 TTAATCATAT
* *
47447062 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATATT
* * *
47447127 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * * *
47447182 TTTAACATAATTATTATTAAATACATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
1 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATATT
* * *
47447247 CAATATTCTTATATGAATTTACTAAAATTATAATATATGATACTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
** *
47447302 TTCGAAATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATATT
1 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATATT
* * *
47447367 AAATATTCTTATATGAATTTACTAAAATTATATTATATAATAGTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * * *
47447422 TTTAAAATAATAATTATTAAATATAATTTAATAAAAAAATATAATTTAATAAAATTCTTAATATT
1 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATATT
47447487 AAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
66 -AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* *
47447543 TCTAAAATAATTATTATTAAATATAATTTAA-TATAAATATATAATTTAATAAAATTCTTAATAT
1 TTTAAAATAATTATTATTAAATATATTTTAATTA-AAATATATAATTTAATAAAATTCTTAATAT
*
47447607 TAAATATTCTTGTATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
65 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
*
47447663 TCTAAAATAATT
1 TTTAAAATAATT
47447675 GATTTTGTGG
Statistics
Matches: 463, Mismatches: 28, Indels: 4
0.94 0.06 0.01
Matches are distributed among these distances:
120 352 0.76
121 111 0.24
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATATT
AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:47447343 original size:18 final size:17
Alignment explanation
Indices: 47447320--47447356 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
47447310 AATTATTATT
47447320 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
47447336 AAATATATGATTTAATA
1 AAATATATGATTTAATA
47447353 AAAT
1 AAAT
47447357 TCTTAATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:47447436 original size:13 final size:12
Alignment explanation
Indices: 47447412--47447452 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 12
47447402 TATAATAGTA
47447412 TAAAATATAATT
1 TAAAATATAATT
47447424 TAAAATAATAATT
1 TAAAAT-ATAATT
*
47447437 ATTAAATATAATT
1 -TAAAATATAATT
47447450 TAA
1 TAA
47447453 TAAAAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 8 0.32
13 12 0.48
14 5 0.20
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
TAAAATATAATT
Found at i:47447461 original size:18 final size:18
Alignment explanation
Indices: 47447440--47447475 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
47447430 AATAATTATT
47447440 AAATATAATTTAATAAAA
1 AAATATAATTTAATAAAA
47447458 AAATATAATTTAATAAAA
1 AAATATAATTTAATAAAA
47447476 TTCTTAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
AAATATAATTTAATAAAA
Found at i:47447586 original size:18 final size:17
Alignment explanation
Indices: 47447563--47447597 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
47447553 TTATTATTAA
47447563 ATATAATTTAATATAAAT
1 ATATAATTTAATA-AAAT
47447581 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
47447598 TCTTAATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:47447593 original size:241 final size:240
Alignment explanation
Indices: 47447068--47447673 Score: 964
Period size: 241 Copynumber: 2.5 Consensus size: 240
47447058 ATATTTTAAC
* *
47447068 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATAT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATATTAAATAT
* * * *
47447133 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAATTTAACATAATTATTA
66 TCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATAATTA
* * * * *
47447198 TTAAATACATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAATCAATATTCTTATATGA
131 TTAAATACAATTTAATAAAAAAATATAATTTAATAAAATTCTTAATAATAAATATTCTTATATGA
* * *
47447263 ATTTACTAAAATTATAATATATGATACTATAAAATATAATTCGAA
196 ATTTACTAAAATCATAATATATAATACTATAAAATATAATTCAAA
*
47447308 ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATATTAAATAT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATATTAAATAT
* * *
47447373 TCTTATATGAATTTACTAAAATTATATTATATAATAGTATAAAATATAATTTAAAATAATAATTA
66 TCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATAATTA
* *
47447438 TTAAATATAATTTAATAAAAAAATATAATTTAATAAAATTCTTAATATTAAAATATTCTTATATG
131 TTAAATACAATTTAATAAAAAAATATAATTTAATAAAATTCTTAATAAT-AAATATTCTTATATG
47447503 AATTTACTAAAATCATAATATATAATACTATAAAATATAA-TCTAAA
195 AATTTACTAAAATCATAATATATAATACTATAAAATATAATTC-AAA
*
47447549 ATAATTATTATTAAATATAATTTAA-TATAAATATATAATTTAATAAAATTCTTAATATTAAATA
1 ATAATTATTATTAAATATATTTTAATTA-AAATATATAATTTAATAAAATTCTTAATATTAAATA
* *
47447613 TTCTTGTATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATCTAAAATAAT
65 TTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAAT
47447674 TGATTTTGTG
Statistics
Matches: 336, Mismatches: 27, Indels: 5
0.91 0.07 0.01
Matches are distributed among these distances:
240 167 0.50
241 169 0.50
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (240 bp):
ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATATTAAATAT
TCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATAATTA
TTAAATACAATTTAATAAAAAAATATAATTTAATAAAATTCTTAATAATAAATATTCTTATATGA
ATTTACTAAAATCATAATATATAATACTATAAAATATAATTCAAA
Found at i:47449430 original size:13 final size:13
Alignment explanation
Indices: 47449414--47449443 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
47449404 TAGACCAAGC
47449414 TTTTCAAAAGCAT
1 TTTTCAAAAGCAT
*
47449427 TTTTCATAAGCAT
1 TTTTCAAAAGCAT
47449440 TTTT
1 TTTT
47449444 TTGCAGCACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.13, G:0.07, T:0.50
Consensus pattern (13 bp):
TTTTCAAAAGCAT
Found at i:47457239 original size:3 final size:3
Alignment explanation
Indices: 47457231--47457290 Score: 66
Period size: 3 Copynumber: 20.0 Consensus size: 3
47457221 ATTAATATAT
* * ** *
47457231 ATA ATA ATA ATA GTA TTA ATA GCA ATA ATA ATA GTA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
47457279 ATA ATA ACA ATA
1 ATA ATA ATA ATA
47457291 TTAAACTAAT
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:47457259 original size:21 final size:21
Alignment explanation
Indices: 47457233--47457284 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
47457223 TAATATATAT
* *
47457233 AATAATAATAGTATTAATAGC
1 AATAATAATAGTAATAATAAC
*
47457254 AATAATAATAGTAATAATAAT
1 AATAATAATAGTAATAATAAC
47457275 AATAATAATA
1 AATAATAATA
47457285 ACAATATTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.33
Consensus pattern (21 bp):
AATAATAATAGTAATAATAAC
Found at i:47459034 original size:96 final size:95
Alignment explanation
Indices: 47458924--47459206 Score: 298
Period size: 92 Copynumber: 3.1 Consensus size: 95
47458914 TGCTTTACTA
* *
47458924 CAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATCTGTTTCACTACAACTTCAGGGAAA
1 CAACTTCAGAGAGATAAGATCT-TAATTTATAGCTTCAATCTGTTCCACTACAACTTTAGGGAAA
*
47458989 TAAGATTCGCTATCTTCAATCTGCTCCACTG
65 TAAGATTCGCTATCTTCAATCTGCTCAACTG
* * * * * ** * *
47459020 CAACTTCAGGGAGATAATA-C-T--TGTA-A-CTTCAACCTGCTCCACTGTAACTTTATGGAGAT
1 CAACTTCAGAGAGATAAGATCTTAATTTATAGCTTCAATCTGTTCCACTACAACTTTAGGGAAAT
* * * * *
47459079 AAGATTTG--AT-AT-GATTTGCTCTACTG
66 AAGATTCGCTATCTTCAATCTGCTCAACTG
* * *
47459105 TAGCTTCAGAGAGATAAGATCTATAATTTATAGCTTCAATCTGTTCCACTACAAATTTAGGGAAA
1 CAACTTCAGAGAGATAAGATCT-TAATTTATAGCTTCAATCTGTTCCACTACAACTTTAGGGAAA
47459170 TAAGATTCGCTATCTTCAATCTGCTCAACTG
65 TAAGATTCGCTATCTTCAATCTGCTCAACTG
47459201 CAACTT
1 CAACTT
47459207 TATGGAGATA
Statistics
Matches: 141, Mismatches: 35, Indels: 22
0.71 0.18 0.11
Matches are distributed among these distances:
85 26 0.18
86 2 0.01
87 2 0.01
88 1 0.01
89 32 0.23
90 4 0.03
91 4 0.03
92 33 0.23
93 1 0.01
94 2 0.01
95 2 0.01
96 32 0.23
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.33
Consensus pattern (95 bp):
CAACTTCAGAGAGATAAGATCTTAATTTATAGCTTCAATCTGTTCCACTACAACTTTAGGGAAAT
AAGATTCGCTATCTTCAATCTGCTCAACTG
Found at i:47459058 original size:44 final size:45
Alignment explanation
Indices: 47458970--47459399 Score: 175
Period size: 45 Copynumber: 9.5 Consensus size: 45
47458960 CAATCTGTTT
* * * *
47458970 CACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAATCTGCTC
1 CACTGCAACTTCAGGGAGATAAGATTCGCTAACTTCAACCTGCTC
*
47459015 CACTGCAACTTCAGGGAGATAATACTT-G-TAACTTCAACCTGCTC
1 CACTGCAACTTCAGGGAGATAAGA-TTCGCTAACTTCAACCTGCTC
* * * * * * **
47459059 CACTGTAACTTTATGGAGATAAGATTTGAT-A--T-GATTTGCTC
1 CACTGCAACTTCAGGGAGATAAGATTCGCTAACTTCAACCTGCTC
* * * * *** * *
47459100 TACTGTAGCTTCAGAGAGATAAGATCTATAATTTATAGCTTCAATCTGTTC
1 CACTGCAACTTCAGGGAGATAAGA--T-T-CGCTA-A-CTTCAACCTGCTC
* * * * * *
47459151 CACTACAAATTTAGGGAAATAAGATTCGCTATCTTCAATCTGCTC
1 CACTGCAACTTCAGGGAGATAAGATTCGCTAACTTCAACCTGCTC
* * * * * * * *
47459196 AACTGCAACTTTATGGAGATAAGGTTTGAT-A--T-GATCTGCTC
1 CACTGCAACTTCAGGGAGATAAGATTCGCTAACTTCAACCTGCTC
* * * * * *
47459237 TACTGCAGCTTCAGAGAGATAAGA-TCTGTAATTTATAGCTTCAATCTGTTC
1 CACTGCAACTTCAGGGAGATAAGATTC-G----CTA-A-CTTCAACCTGCTC
* * ** *
47459288 CATTGCAACTTCAGGGAAATAAGATTCGCTATGTTCAATCTGCTC
1 CACTGCAACTTCAGGGAGATAAGATTCGCTAACTTCAACCTGCTC
* *
47459333 CACTGCAACTTCAGGGAGATAAGACTT-G-TAAGTTTAACCTGCTC
1 CACTGCAACTTCAGGGAGATAAGA-TTCGCTAACTTCAACCTGCTC
* *
47459377 CACTGCAACTTTATGGAGATAAG
1 CACTGCAACTTCAGGGAGATAAG
47459400 GTTTGATATG
Statistics
Matches: 287, Mismatches: 72, Indels: 53
0.70 0.17 0.13
Matches are distributed among these distances:
40 1 0.00
41 52 0.18
42 2 0.01
43 3 0.01
44 71 0.25
45 93 0.32
46 4 0.01
47 6 0.02
48 1 0.00
49 1 0.00
50 2 0.01
51 49 0.17
52 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.32
Consensus pattern (45 bp):
CACTGCAACTTCAGGGAGATAAGATTCGCTAACTTCAACCTGCTC
Found at i:47459089 original size:181 final size:181
Alignment explanation
Indices: 47458825--47459217 Score: 554
Period size: 181 Copynumber: 2.2 Consensus size: 181
47458815 CCATCATTTT
* ** ** ** *
47458825 AATCCGCTCAACTGCAACTTCAAAGAGATAGGA-TTGGTTTCTTCAATCTCCTCCACAGCAACTT
1 AATCTGCTCAACTGCAACTTCAGGGAGATAATACTT-GTAACTTCAACCTCCTCCACAGCAACTT
* * *
47458889 TATGGAGATAAGGTTTGATATGATCTGCTTTACTACAACTTCAGAGAGATAAGATCTGTAATTTA
65 TATGGAGATAAGATTTGATATGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTATAATTTA
* *
47458954 TAGCTTCAATCTGTTTCACTACAACTTCAGGGAAATAAGATTCGCTATCTTC
130 TAGCTTCAATCTGTTCCACTACAAATTCAGGGAAATAAGATTCGCTATCTTC
* * * *
47459006 AATCTGCTCCACTGCAACTTCAGGGAGATAATACTTGTAACTTCAACCTGCTCCACTGTAACTTT
1 AATCTGCTCAACTGCAACTTCAGGGAGATAATACTTGTAACTTCAACCTCCTCCACAGCAACTTT
* ** *
47459071 ATGGAGATAAGATTTGATATGATTTGCTCTACTGTAGCTTCAGAGAGATAAGATCTATAATTTAT
66 ATGGAGATAAGATTTGATATGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTATAATTTAT
*
47459136 AGCTTCAATCTGTTCCACTACAAATTTAGGGAAATAAGATTCGCTATCTTC
131 AGCTTCAATCTGTTCCACTACAAATTCAGGGAAATAAGATTCGCTATCTTC
* *
47459187 AATCTGCTCAACTGCAACTTTATGGAGATAA
1 AATCTGCTCAACTGCAACTTCAGGGAGATAA
47459218 GGTTTGATAT
Statistics
Matches: 186, Mismatches: 25, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
181 184 0.99
182 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (181 bp):
AATCTGCTCAACTGCAACTTCAGGGAGATAATACTTGTAACTTCAACCTCCTCCACAGCAACTTT
ATGGAGATAAGATTTGATATGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTATAATTTAT
AGCTTCAATCTGTTCCACTACAAATTCAGGGAAATAAGATTCGCTATCTTC
Found at i:47459215 original size:137 final size:137
Alignment explanation
Indices: 47459002--47459356 Score: 525
Period size: 137 Copynumber: 2.6 Consensus size: 137
47458992 GATTCGCTAT
* * * * * *
47459002 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAATACTT-G-TAACTTCAACCTGCTCCACTGT
1 CTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGA-TTCGCTATCTTCAATCTGCTCCACTGC
* *
47459065 AACTTTATGGAGATAAGATTTGATATGATTTGCTCTACTGTAGCTTCAGAGAGATAAGATCTATA
65 AACTTTATGGAGATAAGATTTGATATGATCTGCTCTACTGCAGCTTCAGAGAGATAAGATCTATA
47459130 ATTTATAG
130 ATTTATAG
* * * *
47459138 CTTCAATCTGTTCCACTACAAATTTAGGGAAATAAGATTCGCTATCTTCAATCTGCTCAACTGCA
1 CTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAATCTGCTCCACTGCA
* *
47459203 ACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTGCAGCTTCAGAGAGATAAGATCTGTAA
66 ACTTTATGGAGATAAGATTTGATATGATCTGCTCTACTGCAGCTTCAGAGAGATAAGATCTATAA
47459268 TTTATAG
131 TTTATAG
* *
47459275 CTTCAATCTGTTCCATTGCAACTTCAGGGAAATAAGATTCGCTATGTTCAATCTGCTCCACTGCA
1 CTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAATCTGCTCCACTGCA
* *
47459340 ACTTCAGGGAGATAAGA
66 ACTTTATGGAGATAAGA
47459357 CTTGTAAGTT
Statistics
Matches: 194, Mismatches: 23, Indels: 3
0.88 0.10 0.01
Matches are distributed among these distances:
135 2 0.01
136 32 0.16
137 160 0.82
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (137 bp):
CTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAATCTGCTCCACTGCA
ACTTTATGGAGATAAGATTTGATATGATCTGCTCTACTGCAGCTTCAGAGAGATAAGATCTATAA
TTTATAG
Found at i:47459271 original size:318 final size:318
Alignment explanation
Indices: 47458687--47459536 Score: 1106
Period size: 318 Copynumber: 2.7 Consensus size: 318
47458677 TGAAACATTT
* * * * * * *
47458687 GCTATCTTCAATTTGCTCCACTACAACTTCAGGGAGATAAGACTTGTAGCTTCCACATGTTTCAC
1 GCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCAC
** * * * * *** *
47458752 TATAATTTTAAGGAAATAACG-TCTGATGCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATC
66 TGCAACTTTATGGAGATAA-GATTTGATATGATCTGCTCTACTGCAGCTTCAGAGAGATAAGATC
* * * * * * * * * * * *
47458816 CAT--C--AT---TTTAATCCGCTCAACTGCAACTTCAAAGAGATAGGATT-GGTTTCTTCAATC
130 TATAACTTATAGCTTCAATCTGTTCCACTACAAATTCAAGGAAATAAGATTCGCTATCTTCAATC
* * * *
47458873 TCCTCCACAGCAACTTTATGGAGATAAGGTTTGATATGATCTGCTTTACTACAACTTCAGAGAGA
195 TGCTCAACTGCAACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTACAACTTCAGAGAGA
*
47458938 TAAGATCTGTAATTTATAGCTTCAATCTGTTTCACTACAACTTCAGGGAAATAAGATTC
260 TAAGATCTGTAATTTATAGCTTCAATCTGTTCCACTACAACTTCAGGGAAATAAGATTC
*
47458997 GCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAATACTTGTAACTTCAACCTGCTCCAC
1 GCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCAC
* * *
47459062 TGTAACTTTATGGAGATAAGATTTGATATGATTTGCTCTACTGTAGCTTCAGAGAGATAAGATCT
66 TGCAACTTTATGGAGATAAGATTTGATATGATCTGCTCTACTGCAGCTTCAGAGAGATAAGATCT
* * *
47459127 ATAATTTATAGCTTCAATCTGTTCCACTACAAATTTAGGGAAATAAGATTCGCTATCTTCAATCT
131 ATAACTTATAGCTTCAATCTGTTCCACTACAAATTCAAGGAAATAAGATTCGCTATCTTCAATCT
* *
47459192 GCTCAACTGCAACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTGCAGCTTCAGAGAGAT
196 GCTCAACTGCAACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTACAACTTCAGAGAGAT
* *
47459257 AAGATCTGTAATTTATAGCTTCAATCTGTTCCATTGCAACTTCAGGGAAATAAGATTC
261 AAGATCTGTAATTTATAGCTTCAATCTGTTCCACTACAACTTCAGGGAAATAAGATTC
* * *
47459315 GCTATGTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAAGTTTAACCTGCTCCAC
1 GCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCAC
*
47459380 TGCAACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTGCAGCTTCAGAGAGATAAGATCT
66 TGCAACTTTATGGAGATAAGATTTGATATGATCTGCTCTACTGCAGCTTCAGAGAGATAAGATCT
* * * * * *
47459445 ATAACTTATAGCTTCAATCTGTTCCATTGCAACTTCAAGGAAATAATATTCGCTATGTTCAGTCT
131 ATAACTTATAGCTTCAATCTGTTCCACTACAAATTCAAGGAAATAAGATTCGCTATCTTCAATCT
* * *
47459510 GCTCTACTGCAACTTCAAGGAGATAAG
196 GCTCAACTGCAACTTTATGGAGATAAG
47459537 ACTTCACTTC
Statistics
Matches: 468, Mismatches: 63, Indels: 10
0.87 0.12 0.02
Matches are distributed among these distances:
309 1 0.00
310 110 0.24
314 2 0.00
317 27 0.06
318 328 0.70
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (318 bp):
GCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCAC
TGCAACTTTATGGAGATAAGATTTGATATGATCTGCTCTACTGCAGCTTCAGAGAGATAAGATCT
ATAACTTATAGCTTCAATCTGTTCCACTACAAATTCAAGGAAATAAGATTCGCTATCTTCAATCT
GCTCAACTGCAACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTACAACTTCAGAGAGAT
AAGATCTGTAATTTATAGCTTCAATCTGTTCCACTACAACTTCAGGGAAATAAGATTC
Found at i:47459310 original size:92 final size:91
Alignment explanation
Indices: 47459183--47459490 Score: 331
Period size: 92 Copynumber: 3.4 Consensus size: 91
47459173 GATTCGCTAT
* * *
47459183 CTTCAATCTGCTCAACTGCAACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTGCAGCTT
1 CTTCAATCTGCTCCACTGCAACTTCATGGAAATAAGGTTTGATATGATCTGCTCTACTGCAGCTT
47459248 CAGAGAGATAAGATCTGTAATTTATAG
66 CAGAGAGATAAGATCT-TAATTTATAG
* * * * * * *
47459275 CTTCAATCTGTTCCATTGCAACTTCAGGGAAATAAGATTCGCTATGTTCAATCTGCTCCACTGCA
1 CTTCAATCTGCTCCACTGCAACTTCATGGAAATAAGGTTTGATATG----ATCTGCTCTACTGCA
* * *
47459340 ACTTCAGGGAGATAAGA-C-T--TGTA-AG
62 GCTTCAGAGAGATAAGATCTTAATTTATAG
* * * *
47459365 -TTTAACCTGCTCCACTGCAACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTGCAGCTT
1 CTTCAATCTGCTCCACTGCAACTTCATGGAAATAAGGTTTGATATGATCTGCTCTACTGCAGCTT
*
47459429 CAGAGAGATAAGATCTATAACTTATAG
66 CAGAGAGATAAGATCT-TAATTTATAG
* * *
47459456 CTTCAATCTGTTCCATTGCAACTTCAAGGAAATAA
1 CTTCAATCTGCTCCACTGCAACTTCATGGAAATAA
47459491 TATTCGCTAT
Statistics
Matches: 170, Mismatches: 35, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
85 29 0.17
86 1 0.01
88 1 0.01
89 35 0.21
90 4 0.02
91 5 0.03
92 64 0.38
93 1 0.01
95 1 0.01
96 29 0.17
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (91 bp):
CTTCAATCTGCTCCACTGCAACTTCATGGAAATAAGGTTTGATATGATCTGCTCTACTGCAGCTT
CAGAGAGATAAGATCTTAATTTATAG
Found at i:47459352 original size:96 final size:95
Alignment explanation
Indices: 47459229--47459537 Score: 343
Period size: 96 Copynumber: 3.3 Consensus size: 95
47459219 GTTTGATATG
*
47459229 ATCTGCTCTACTGCAGCTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATCTGTTCCATTGC
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCT-TAATTTATAGCTTCAATCTGTTCCATTGC
*
47459294 AACTTCAGGGAAATAAGATTCGCTATGTTCA
65 AACTTCAAGGAAATAAGATTCGCTATGTTCA
* * * * * * *
47459325 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA-C-T--TGTA-AG-TTTAACCTGCTCCACTGCA
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTTAATTTATAGCTTCAATCTGTTCCATTGCA
* * * * * *
47459384 ACTTTATGGAGATAAGGTTTGATATG----
66 ACTTCAAGGAAATAAGATTCGCTATGTTCA
* *
47459410 ATCTGCTCTACTGCAGCTTCAGAGAGATAAGATCTATAACTTATAGCTTCAATCTGTTCCATTGC
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCT-TAATTTATAGCTTCAATCTGTTCCATTGC
*
47459475 AACTTCAAGGAAATAATATTCGCTATGTTCA
65 AACTTCAAGGAAATAAGATTCGCTATGTTCA
*
47459506 GTCTGCTCTACTGCAACTTCA-AGGAGATAAGA
1 ATCTGCTCTACTGCAACTTCAGA-GAGATAAGA
47459538 CTTCACTTCA
Statistics
Matches: 169, Mismatches: 32, Indels: 24
0.75 0.14 0.11
Matches are distributed among these distances:
85 29 0.17
86 1 0.01
88 1 0.01
89 35 0.21
90 4 0.02
91 5 0.03
92 34 0.20
93 1 0.01
95 2 0.01
96 57 0.34
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (95 bp):
ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTTAATTTATAGCTTCAATCTGTTCCATTGCA
ACTTCAAGGAAATAAGATTCGCTATGTTCA
Found at i:47459408 original size:181 final size:181
Alignment explanation
Indices: 47459190--47459540 Score: 630
Period size: 181 Copynumber: 1.9 Consensus size: 181
47459180 TATCTTCAAT
47459190 CTGCTCAACTGCAACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTGCAGCTTCAGAGAG
1 CTGCTCAACTGCAACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTGCAGCTTCAGAGAG
* * *
47459255 ATAAGATCTGTAATTTATAGCTTCAATCTGTTCCATTGCAACTTCAGGGAAATAAGATTCGCTAT
66 ATAAGATCTATAACTTATAGCTTCAATCTGTTCCATTGCAACTTCAAGGAAATAAGATTCGCTAT
*
47459320 GTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAAGTTTAAC
131 GTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGACTTGTAAGTTTAAC
*
47459371 CTGCTCCACTGCAACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTGCAGCTTCAGAGAG
1 CTGCTCAACTGCAACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTGCAGCTTCAGAGAG
*
47459436 ATAAGATCTATAACTTATAGCTTCAATCTGTTCCATTGCAACTTCAAGGAAATAATATTCGCTAT
66 ATAAGATCTATAACTTATAGCTTCAATCTGTTCCATTGCAACTTCAAGGAAATAAGATTCGCTAT
* *
47459501 GTTCAGTCTGCTCTACTGCAACTTCAAGGAGATAAGACTT
131 GTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGACTT
47459541 CACTTCAATC
Statistics
Matches: 162, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
181 162 1.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (181 bp):
CTGCTCAACTGCAACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTGCAGCTTCAGAGAG
ATAAGATCTATAACTTATAGCTTCAATCTGTTCCATTGCAACTTCAAGGAAATAAGATTCGCTAT
GTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGACTTGTAAGTTTAAC
Found at i:47464304 original size:18 final size:18
Alignment explanation
Indices: 47464281--47464315 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
47464271 ATGATTTGAC
*
47464281 AAAGAATTCAAAATAATG
1 AAAGAATCCAAAATAATG
47464299 AAAGAATCCAAAATAAT
1 AAAGAATCCAAAATAAT
47464316 TACTTATACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.63, C:0.09, G:0.09, T:0.20
Consensus pattern (18 bp):
AAAGAATCCAAAATAATG
Found at i:47472218 original size:12 final size:12
Alignment explanation
Indices: 47472203--47472259 Score: 60
Period size: 12 Copynumber: 4.8 Consensus size: 12
47472193 AATGATATAT
*
47472203 ATAAAAATAATA
1 ATAACAATAATA
* * *
47472215 ATAATAGTATTA
1 ATAACAATAATA
*
47472227 ATAGCAATAATA
1 ATAACAATAATA
*
47472239 ATAACAATACTA
1 ATAACAATAATA
47472251 ATAACAATA
1 ATAACAATA
47472260 TTAAACTAAT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 36 1.00
ACGTcount: A:0.61, C:0.07, G:0.04, T:0.28
Consensus pattern (12 bp):
ATAACAATAATA
Found at i:47474208 original size:34 final size:34
Alignment explanation
Indices: 47474169--47474243 Score: 114
Period size: 34 Copynumber: 2.2 Consensus size: 34
47474159 GATACACGAG
* * *
47474169 TAAACTACAACACACCAGATAGCTTGTAGGAGCT
1 TAAACTACAACACACCAGATAGCTCGCAAGAGCT
*
47474203 TAAACTACATCACACCAGATAGCTCGCAAGAGCT
1 TAAACTACAACACACCAGATAGCTCGCAAGAGCT
47474237 TAAACTA
1 TAAACTA
47474244 TACCACAACA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.40, C:0.25, G:0.15, T:0.20
Consensus pattern (34 bp):
TAAACTACAACACACCAGATAGCTCGCAAGAGCT
Found at i:47480899 original size:21 final size:21
Alignment explanation
Indices: 47480873--47480918 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
47480863 TTTTCTGTCT
47480873 TTTATTAACTAAATAACTGAA
1 TTTATTAACTAAATAACTGAA
47480894 TTTATTAACTAAATAACTGAA
1 TTTATTAACTAAATAACTGAA
47480915 TTTA
1 TTTA
47480919 AATAGAGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.46, C:0.09, G:0.04, T:0.41
Consensus pattern (21 bp):
TTTATTAACTAAATAACTGAA
Found at i:47481049 original size:19 final size:19
Alignment explanation
Indices: 47481025--47481065 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
47481015 TGATTTATTC
47481025 TAAGATTTATCTACCTAAA
1 TAAGATTTATCTACCTAAA
47481044 TAAGATTTATCTACCTAAA
1 TAAGATTTATCTACCTAAA
47481063 TAA
1 TAA
47481066 CTTTAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.37
Consensus pattern (19 bp):
TAAGATTTATCTACCTAAA
Found at i:47500439 original size:16 final size:16
Alignment explanation
Indices: 47500418--47500462 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
47500408 ATATATTTTC
* *
47500418 TAAATATAATAATGTA
1 TAAATAAAATAATGAA
*
47500434 TAAATAAAATCATGAA
1 TAAATAAAATAATGAA
*
47500450 TATATAAAATAAT
1 TAAATAAAATAAT
47500463 ACTTGAAATC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.33
Consensus pattern (16 bp):
TAAATAAAATAATGAA
Found at i:47501027 original size:93 final size:92
Alignment explanation
Indices: 47500840--47501028 Score: 236
Period size: 93 Copynumber: 2.0 Consensus size: 92
47500830 CTCAAACTTT
* * *
47500840 AAAAAAAAACAATTAAGCCCCTCTTTTTTTTTGCACTCAATTGAGCAATTGAATTTTCAAAATGT
1 AAAAAAAAACAATTAAGCCCCTCTTTTTTTATGCACTCAATTGAGCAATTGAACTTTCAAAATGC
* **
47500905 ATCAAAAAGGCCTCAAACTTCTTCAAA
66 ATAAAAAAACCCTCAAACTTCTTCAAA
* * *
47500932 AAAAAAAAACCAATTAAGCCTCTGCTTTTTTTAT-CACTCAATTGGGCACTTGAACTTTCAAAAT
1 AAAAAAAAA-CAATTAAGCCCCT-CTTTTTTTATGCACTCAATTGAGCAATTGAACTTTCAAAAT
* * *
47500996 GCATAAAAAAAACCCTTAAATTTTTTCAAA
64 GCAT-AAAAAAACCCTCAAACTTCTTCAAA
47501026 AAA
1 AAA
47501029 GCAAGTAAGC
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
92 9 0.11
93 42 0.51
94 31 0.38
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (92 bp):
AAAAAAAAACAATTAAGCCCCTCTTTTTTTATGCACTCAATTGAGCAATTGAACTTTCAAAATGC
ATAAAAAAACCCTCAAACTTCTTCAAA
Found at i:47501086 original size:19 final size:21
Alignment explanation
Indices: 47501050--47501095 Score: 60
Period size: 19 Copynumber: 2.3 Consensus size: 21
47501040 TTGCCCTTAT
*
47501050 TAAAAATTAGAAAGAAAATTA
1 TAAAAAATAGAAAGAAAATTA
47501071 TAAAAAATA-AAA-AAAATTA
1 TAAAAAATAGAAAGAAAATTA
*
47501090 GAAAAA
1 TAAAAA
47501096 TTATTAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 12 0.52
20 3 0.13
21 8 0.35
ACGTcount: A:0.74, C:0.00, G:0.07, T:0.20
Consensus pattern (21 bp):
TAAAAAATAGAAAGAAAATTA
Found at i:47501139 original size:17 final size:18
Alignment explanation
Indices: 47501119--47501159 Score: 66
Period size: 17 Copynumber: 2.3 Consensus size: 18
47501109 ATAAAATATA
47501119 AAAAATAGATTTTTTT-T
1 AAAAATAGATTTTTTTAT
*
47501136 AAAATTAGATTTTTTTAT
1 AAAAATAGATTTTTTTAT
47501154 AAAAAT
1 AAAAAT
47501160 CATAAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (18 bp):
AAAAATAGATTTTTTTAT
Found at i:47501456 original size:27 final size:26
Alignment explanation
Indices: 47501407--47501460 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 26
47501397 ACTTTATAAA
*
47501407 ATTTTATAATTTTTTATATTTCTATAT
1 ATTTTATAATTTTTTAGATTTCT-TAT
*
47501434 ATTTTATTATTTTTTACGA-TTCTTAT
1 ATTTTATAATTTTTTA-GATTTCTTAT
47501460 A
1 A
47501461 AAAGTTTACA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 4 0.17
27 19 0.79
28 1 0.04
ACGTcount: A:0.28, C:0.06, G:0.02, T:0.65
Consensus pattern (26 bp):
ATTTTATAATTTTTTAGATTTCTTAT
Found at i:47501487 original size:19 final size:19
Alignment explanation
Indices: 47501465--47501501 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
47501455 CTTATAAAAG
*
47501465 TTTACAATTTTTTATATTT
1 TTTACAATTTTTAATATTT
*
47501484 TTTACGATTTTTAATATT
1 TTTACAATTTTTAATATT
47501502 GGAATTTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.27, C:0.05, G:0.03, T:0.65
Consensus pattern (19 bp):
TTTACAATTTTTAATATTT
Found at i:47501494 original size:56 final size:56
Alignment explanation
Indices: 47501361--47501498 Score: 165
Period size: 56 Copynumber: 2.4 Consensus size: 56
47501351 ATTTACGAAC
* *
47501361 TTTATATTTCTTTACATTTGGTATAATTTTCTTACGACTTTATAAAATTTTATAATTT
1 TTTATATTTCTTTACATTT--TATAATTTTCTTACGACTTTATAAAAGTTTACAATTT
* * * *
47501419 TTTATATTTCTATATATTTTATTATTTT-TTACGATTCTTATAAAAGTTTACAATTT
1 TTTATATTTCTTTACATTTTATAATTTTCTTACGACT-TTATAAAAGTTTACAATTT
47501475 TTTATATTT-TTTACGATTTT-TAAT
1 TTTATATTTCTTTAC-ATTTTATAAT
47501499 ATTGGAATTT
Statistics
Matches: 69, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
55 13 0.19
56 39 0.57
58 17 0.25
ACGTcount: A:0.29, C:0.07, G:0.04, T:0.59
Consensus pattern (56 bp):
TTTATATTTCTTTACATTTTATAATTTTCTTACGACTTTATAAAAGTTTACAATTT
Found at i:47501739 original size:91 final size:91
Alignment explanation
Indices: 47501596--47501793 Score: 310
Period size: 91 Copynumber: 2.2 Consensus size: 91
47501586 GGCTTAAATT
* * *
47501596 TTTTTTTGAAAAAG-TTTTAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAGTG
1 TTTTTTTGAAAAAGCTTTGAGGGCCTTTTTGATGCATTTTGAAAGTTCAAGTACCCAAATGAGTG
* *
47501660 CAAAAAAAAACGTAGGGGCTTAATTGC
66 CAAAAAAAAA-GAAGGGGCTTAATTAC
*
47501687 TTTTTTTG-AAAAGCTTTGAGGGCCTTTTTGATGCATTTTGAAGGTTCAAGTACCCAAATGAGTG
1 TTTTTTTGAAAAAGCTTTGAGGGCCTTTTTGATGCATTTTGAAAGTTCAAGTACCCAAATGAGTG
*
47501751 CAAAAAAATAGAAGGGGCTTAATTAC
66 CAAAAAAAAAGAAGGGGCTTAATTAC
47501777 TTTTTTTGAAAAAGCTT
1 TTTTTTTGAAAAAGCTT
47501794 GACGACTTTT
Statistics
Matches: 98, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
90 27 0.28
91 71 0.72
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.36
Consensus pattern (91 bp):
TTTTTTTGAAAAAGCTTTGAGGGCCTTTTTGATGCATTTTGAAAGTTCAAGTACCCAAATGAGTG
CAAAAAAAAAGAAGGGGCTTAATTAC
Found at i:47505851 original size:27 final size:27
Alignment explanation
Indices: 47505813--47505868 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
47505803 TCTAAATGTA
47505813 GACTAAGATTTTGAAAAGGAGTTTAGG
1 GACTAAGATTTTGAAAAGGAGTTTAGG
47505840 GACTAAGATTTTGAAAAGGAGTTTAGG
1 GACTAAGATTTTGAAAAGGAGTTTAGG
47505867 GA
1 GA
47505869 TTCATAGGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.38, C:0.04, G:0.30, T:0.29
Consensus pattern (27 bp):
GACTAAGATTTTGAAAAGGAGTTTAGG
Found at i:47524395 original size:50 final size:50
Alignment explanation
Indices: 47524319--47524555 Score: 305
Period size: 50 Copynumber: 4.7 Consensus size: 50
47524309 GGTAAAGAGA
*
47524319 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAAG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAG
* * * *
47524369 ACCCATGTAAGACCATGTCTGGGACATGACGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAG
*
47524419 TCCCATGTAAGACCATGTCTGGGACATGGTC-TTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGG-CATTGGCACCGAGATGAGAAG
** * * * * *
47524469 TCCCCCGTAAGACCATGTCTGAGACATGGCATGGGCACCTATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAG
** * *
47524519 TTTCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
47524556 GTACAAGAAA
Statistics
Matches: 164, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
49 1 0.01
50 162 0.99
51 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAG
Found at i:47532127 original size:51 final size:51
Alignment explanation
Indices: 47532069--47532169 Score: 175
Period size: 51 Copynumber: 2.0 Consensus size: 51
47532059 ATGAGTTTCA
* *
47532069 TCAATGTGCTGCAGTAGTGCGAAAATTAAGGTGTTGGTCCTTACTCGTTAG
1 TCAATGTGCTGCAATAGTGCGAAAATTAAGATGTTGGTCCTTACTCGTTAG
*
47532120 TCAATGTGCTGCAATAGTGCGAAAATTAAGATGTTGGTCCTTGCTCGTTA
1 TCAATGTGCTGCAATAGTGCGAAAATTAAGATGTTGGTCCTTACTCGTTA
47532170 ACTTGAATGT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.34
Consensus pattern (51 bp):
TCAATGTGCTGCAATAGTGCGAAAATTAAGATGTTGGTCCTTACTCGTTAG
Found at i:47534358 original size:12 final size:12
Alignment explanation
Indices: 47534341--47534368 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
47534331 TCAGGTAGTT
47534341 ACACGGCCTAGC
1 ACACGGCCTAGC
47534353 ACACGGCCTAGC
1 ACACGGCCTAGC
47534365 ACAC
1 ACAC
47534369 AGGCATGTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.29, C:0.43, G:0.21, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:47536764 original size:30 final size:30
Alignment explanation
Indices: 47536728--47536793 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
47536718 TTCACATGGT
47536728 CGTGTGAGCTGATCGTATGTGGAACACGAC
1 CGTGTGAGCTGATCGTATGTGGAACACGAC
* * * * *
47536758 TGTGTGAGGTGATTGTGTGTGGCACACGAC
1 CGTGTGAGCTGATCGTATGTGGAACACGAC
47536788 CGTGTG
1 CGTGTG
47536794 GAAACCCATG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.18, C:0.17, G:0.38, T:0.27
Consensus pattern (30 bp):
CGTGTGAGCTGATCGTATGTGGAACACGAC
Found at i:47537816 original size:20 final size:20
Alignment explanation
Indices: 47537801--47537839 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
47537791 TTGTGCAATA
47537801 AGAGGCACCAAAGTGCAAAC
1 AGAGGCACCAAAGTGCAAAC
* *
47537821 AGTGGCATCAAAGTGCAAA
1 AGAGGCACCAAAGTGCAAA
47537840 TCCCATACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.21, G:0.26, T:0.10
Consensus pattern (20 bp):
AGAGGCACCAAAGTGCAAAC
Found at i:47544466 original size:53 final size:53
Alignment explanation
Indices: 47544389--47544495 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
47544379 AAAGTGATTG
47544389 ATTATGCTTTTGATCTGCCACAATTTAGTGTGACAAATTAAGCCATTTTCATT
1 ATTATGCTTTTGATCTGCCACAATTTAGTGTGACAAATTAAGCCATTTTCATT
47544442 ATTATGCTTTTGATCTGCCACAATTTAGTGTGACAAATTAAGCCATTTTCATT
1 ATTATGCTTTTGATCTGCCACAATTTAGTGTGACAAATTAAGCCATTTTCATT
47544495 A
1 A
47544496 CATAAGGAAC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (53 bp):
ATTATGCTTTTGATCTGCCACAATTTAGTGTGACAAATTAAGCCATTTTCATT
Found at i:47549505 original size:20 final size:19
Alignment explanation
Indices: 47549463--47549533 Score: 61
Period size: 20 Copynumber: 3.6 Consensus size: 19
47549453 GCATCATAGA
**
47549463 TGCATAATAGGGGCACTGAG
1 TGCA-AATAGGGGCACAAAG
*
47549483 TGCAGATAGGGGCACAAATG
1 TGCAAATAGGGGCACAAA-G
* **
47549503 TGCAAACAGGGGCACCGTAG
1 TGCAAATAGGGGCA-CAAAG
47549523 TGCAAATAGGG
1 TGCAAATAGGG
47549534 ACATGAAGTG
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 11 0.27
20 28 0.68
21 2 0.05
ACGTcount: A:0.32, C:0.17, G:0.35, T:0.15
Consensus pattern (19 bp):
TGCAAATAGGGGCACAAAG
Found at i:47551511 original size:423 final size:424
Alignment explanation
Indices: 47550725--47551570 Score: 1487
Period size: 423 Copynumber: 2.0 Consensus size: 424
47550715 TAATATTATT
*
47550725 ATAACATATAAAACACATGTAAAATTAAAAGAAATTAAAGCTTTAACCGTCCACCCACTTAATAA
1 ATAACATATAAAACACATGTAAAATTAAAAGAAATTAAAGCTTTAACCGTCCACCCACTTAAGAA
47550790 TGGGTAATTTACCCATTAAGGCCATCCAAATATAATTCTTTAATCAATTAACACCTTTAAACTAA
66 TGGGTAATTTACCCATTAAGGCCATCCAAATATAATTCTTTAATCAATTAACACCTTTAAACTAA
*
47550855 TAGCGATTGATTTTTTCAACTTTTACGATTTAGTCCTTTTTGTTTAATTAAGAATCGAAACATTA
131 TAGCGATTGATTTTTTCAACTTTTACGATTTAGTCCTTTTTGCTTAATTAAGAATCGAAACATTA
47550920 AAATTTCTTAATGAAACTTAAATACAATCTTAATAACACTCTGTAAACATTTATAAAAATACTTA
196 AAATTTCTTAATGAAACTTAAATACAATCTTAATAACACTCTGTAAACATTTATAAAAATACTTA
* * * *
47550985 TAGCTTAGTTTATAGAAACGAGGTACCGATACCTCATTTTTTAAAACCACTTGACTTTAGGGTCT
261 TAGCTCAGTTTATAGAAACGAGGTACCAATACCTCATTTTCTAAAACCACTTAACTTTAGGGTCT
*
47551050 TACCACTTAAACTTAATTAATCATTCATATAACATAAATTACCATATTAAAAA-CATTTTTAAAA
326 TACCACTTAAACTTAATTAATCATTCATATAACATAAATTACAATATTAAAAACCATTTTTAAAA
*
47551114 CCATATTTGACTCGTGAATATTAAATAATAATAA
391 CCATATTTGACTCGTAAATATTAAATAATAATAA
*
47551148 ATAACATATAAAACACATGTAAAATTAAAAGAAATTAAAGCTTTAACCGTCCACCCACTTAAGCA
1 ATAACATATAAAACACATGTAAAATTAAAAGAAATTAAAGCTTTAACCGTCCACCCACTTAAGAA
*
47551213 TGGGTAATTTACCCGTTAAGGCCATCCAAATATAATTCTTTAATCAATTAACACCTTTAAACTAA
66 TGGGTAATTTACCCATTAAGGCCATCCAAATATAATTCTTTAATCAATTAACACCTTTAAACTAA
* * *
47551278 TAGCGATTGATTTTTTCAACTTTTACGGTTTAGTCCTTTTTGCTTAATTAAGTATTGAAACATTA
131 TAGCGATTGATTTTTTCAACTTTTACGATTTAGTCCTTTTTGCTTAATTAAGAATCGAAACATTA
* * *
47551343 AAATTTCTTAATGAAACTTAAATACAATCTTAATAACACTTTGTAAACATTTATAGAAATATTTA
196 AAATTTCTTAATGAAACTTAAATACAATCTTAATAACACTCTGTAAACATTTATAAAAATACTTA
* *
47551408 TGGCTCAGTTTATAGAAACGAGGTCCCAATACCTCATTTTCTAAAACCACTTAACTTTAGGGTCT
261 TAGCTCAGTTTATAGAAACGAGGTACCAATACCTCATTTTCTAAAACCACTTAACTTTAGGGTCT
* * *
47551473 TACTACTTGAACTTAATTAATCATTCATATAACATAAATTACAATATTAAAAACCTTTTTTAAAA
326 TACCACTTAAACTTAATTAATCATTCATATAACATAAATTACAATATTAAAAACCATTTTTAAAA
*
47551538 CCATATTTGACTCTTAAATATTAAATAATAATA
391 CCATATTTGACTCGTAAATATTAAATAATAATA
47551571 TTTATGAACT
Statistics
Matches: 400, Mismatches: 22, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
423 359 0.90
424 41 0.10
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (424 bp):
ATAACATATAAAACACATGTAAAATTAAAAGAAATTAAAGCTTTAACCGTCCACCCACTTAAGAA
TGGGTAATTTACCCATTAAGGCCATCCAAATATAATTCTTTAATCAATTAACACCTTTAAACTAA
TAGCGATTGATTTTTTCAACTTTTACGATTTAGTCCTTTTTGCTTAATTAAGAATCGAAACATTA
AAATTTCTTAATGAAACTTAAATACAATCTTAATAACACTCTGTAAACATTTATAAAAATACTTA
TAGCTCAGTTTATAGAAACGAGGTACCAATACCTCATTTTCTAAAACCACTTAACTTTAGGGTCT
TACCACTTAAACTTAATTAATCATTCATATAACATAAATTACAATATTAAAAACCATTTTTAAAA
CCATATTTGACTCGTAAATATTAAATAATAATAA
Found at i:47552032 original size:17 final size:17
Alignment explanation
Indices: 47552010--47552045 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
47552000 CTTATAACTT
47552010 AAAAAGTTACGCTCTTA
1 AAAAAGTTACGCTCTTA
47552027 AAAAAGTTACGCTCTTA
1 AAAAAGTTACGCTCTTA
47552044 AA
1 AA
47552046 GGAATATCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.44, C:0.17, G:0.11, T:0.28
Consensus pattern (17 bp):
AAAAAGTTACGCTCTTA
Found at i:47552308 original size:12 final size:12
Alignment explanation
Indices: 47552287--47552315 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
47552277 CCAACCACTG
47552287 TTAG-TAATTTC
1 TTAGTTAATTTC
47552298 TTAGTTAATTTC
1 TTAGTTAATTTC
47552310 TTAGTT
1 TTAGTT
47552316 TTGTACTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 4 0.24
12 13 0.76
ACGTcount: A:0.24, C:0.07, G:0.10, T:0.59
Consensus pattern (12 bp):
TTAGTTAATTTC
Done.