Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 165 of 207
Found at i:50833364 original size:8 final size:8
Alignment explanation
Indices: 50833297--50833366 Score: 63
Period size: 8 Copynumber: 8.4 Consensus size: 8
50833287 ATTACTATGA
50833297 AAATATAT
1 AAATATAT
50833305 AAA-ATAT
1 AAATATAT
50833312 AAA-ATAT
1 AAATATAT
50833319 AAATATAT
1 AAATATAT
*
50833327 AGAATCCTAT
1 A-AAT-ATAT
*
50833337 AACATATGT
1 AA-ATATAT
50833346 AAAACTATAT
1 -AAA-TATAT
50833356 AAATATAT
1 AAATATAT
50833364 AAA
1 AAA
50833367 AGCGTATAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
7 14 0.27
8 16 0.31
9 10 0.19
10 12 0.23
ACGTcount: A:0.60, C:0.06, G:0.03, T:0.31
Consensus pattern (8 bp):
AAATATAT
Found at i:50833375 original size:18 final size:17
Alignment explanation
Indices: 50833296--50833367 Score: 60
Period size: 18 Copynumber: 4.2 Consensus size: 17
50833286 TATTACTATG
*
50833296 AAAATATATAAA-ATAT
1 AAAACATATAAATATAT
50833312 -AAA-ATATAAATATAT
1 AAAACATATAAATATAT
* * *
50833327 AGAATCCTATAACATATGT
1 A-AAACATATAA-ATATAT
50833346 AAAACTATATAAATATAT
1 AAAAC-ATATAAATATAT
50833364 AAAA
1 AAAA
50833368 GCGTATAATT
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
14 7 0.16
15 7 0.16
17 2 0.05
18 17 0.39
19 11 0.25
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.31
Consensus pattern (17 bp):
AAAACATATAAATATAT
Found at i:50842149 original size:16 final size:16
Alignment explanation
Indices: 50842128--50842158 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
50842118 TAAATAATTT
50842128 TTATATTTAAAAAAAC
1 TTATATTTAAAAAAAC
50842144 TTATATTTAAAAAAA
1 TTATATTTAAAAAAA
50842159 AATTATGCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (16 bp):
TTATATTTAAAAAAAC
Found at i:50842194 original size:16 final size:16
Alignment explanation
Indices: 50842173--50842212 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
50842163 ATGCACTTTT
50842173 ATTTTAAATATATATA
1 ATTTTAAATATATATA
* *
50842189 ATTTTAAATTTTTATA
1 ATTTTAAATATATATA
*
50842205 TTTTTAAA
1 ATTTTAAA
50842213 ATTGACAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
ATTTTAAATATATATA
Found at i:50842353 original size:9 final size:9
Alignment explanation
Indices: 50842341--50842392 Score: 52
Period size: 9 Copynumber: 5.3 Consensus size: 9
50842331 GTTGAACCAG
50842341 TTTTTATAA
1 TTTTTATAA
50842350 TTTTTATAA
1 TTTTTATAA
50842359 TTTATTGACTTAA
1 TTT-TT-A--TAA
50842372 -TTTTATAA
1 TTTTTATAA
50842380 TTTTATATAA
1 TTTT-TATAA
50842390 TTT
1 TTT
50842393 ATTTTCTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
8 3 0.08
9 15 0.41
10 11 0.30
11 3 0.08
12 2 0.05
13 3 0.08
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (9 bp):
TTTTTATAA
Found at i:50842392 original size:31 final size:31
Alignment explanation
Indices: 50842342--50842416 Score: 107
Period size: 32 Copynumber: 2.4 Consensus size: 31
50842332 TTGAACCAGT
50842342 TTTTATAATTTTTATAATTTATTGAC-TTAA
1 TTTTATAATTTTTATAATTTATTGACTTTAA
** *
50842372 TTTTATAATTTTATATAATTTATTTTCTTTTA
1 TTTTATAATTTT-TATAATTTATTGACTTTAA
50842404 TTTTATAATTTTT
1 TTTTATAATTTTT
50842417 GTATATATTA
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
30 12 0.30
31 13 0.32
32 15 0.38
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.67
Consensus pattern (31 bp):
TTTTATAATTTTTATAATTTATTGACTTTAA
Found at i:50842912 original size:103 final size:103
Alignment explanation
Indices: 50842733--50842939 Score: 387
Period size: 103 Copynumber: 2.0 Consensus size: 103
50842723 AAGGAGACCT
50842733 AATATTTGCTAGACCTTTAAATGAGAGCTACGATTTAATGGTGAATCTTAGTTTTCAAGGCGAGT
1 AATATTTGCTAGACCTTTAAATGAGAGCTACGATTTAATGGTGAATCTTAGTTTTCAAGGCGAGT
*
50842798 TAAGAGATCAAGAGGGACTAGGATTAGTCATAAAATTG
66 TAAGAGATCAAGAAGGACTAGGATTAGTCATAAAATTG
*
50842836 AATATTTGCTAGACCTTTAAATGAGAGCTACGATTTAGTGGTGAATCTTAGTTTTCAAGGCGAGT
1 AATATTTGCTAGACCTTTAAATGAGAGCTACGATTTAATGGTGAATCTTAGTTTTCAAGGCGAGT
*
50842901 TGAGAGATCAAGAAGGACTAGGATTAGTCATAAAATTG
66 TAAGAGATCAAGAAGGACTAGGATTAGTCATAAAATTG
50842939 A
1 A
50842940 GGATGAGTAA
Statistics
Matches: 101, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 101 1.00
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.31
Consensus pattern (103 bp):
AATATTTGCTAGACCTTTAAATGAGAGCTACGATTTAATGGTGAATCTTAGTTTTCAAGGCGAGT
TAAGAGATCAAGAAGGACTAGGATTAGTCATAAAATTG
Found at i:50844874 original size:37 final size:38
Alignment explanation
Indices: 50844825--50844897 Score: 105
Period size: 38 Copynumber: 1.9 Consensus size: 38
50844815 TCCTTTTTTG
50844825 TTTCCCTTTTTCC-CTTTCTTTCCC-TTGTTTTTTCAT
1 TTTCCCTTTTTCCTCTTTCTTTCCCATTGTTTTTTCAT
* *
50844861 TTTCCCGTTTTTCCTTTTTCTTTCCCATTTTTTTTTC
1 TTTCCC-TTTTTCCTCTTTCTTTCCCATTGTTTTTTC
50844898 TTCTCAACCA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 6 0.19
37 7 0.22
38 10 0.31
39 9 0.28
ACGTcount: A:0.03, C:0.29, G:0.03, T:0.66
Consensus pattern (38 bp):
TTTCCCTTTTTCCTCTTTCTTTCCCATTGTTTTTTCAT
Found at i:50844901 original size:20 final size:19
Alignment explanation
Indices: 50844840--50844901 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 19
50844830 CTTTTTCCCT
*
50844840 TTCTTTCCCTTGTTTTTTC
1 TTCTTTCCCTTTTTTTTTC
* *
50844859 AT-TTTCCCGTTTTTCCTTT-
1 TTCTTTCCC-TTTTT-TTTTC
50844878 TTCTTTCCCATTTTTTTTTC
1 TTCTTTCCC-TTTTTTTTTC
50844898 TTCT
1 TTCT
50844902 CAACCAAGCC
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
18 6 0.18
19 9 0.27
20 18 0.55
ACGTcount: A:0.03, C:0.26, G:0.03, T:0.68
Consensus pattern (19 bp):
TTCTTTCCCTTTTTTTTTC
Found at i:50847109 original size:23 final size:23
Alignment explanation
Indices: 50847057--50847109 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
50847047 AGTGTTATTG
50847057 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
50847080 TTTAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
50847103 ATCAGTG
1 ATCAGTG
50847110 TGGCACTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.34
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:50852970 original size:21 final size:21
Alignment explanation
Indices: 50852944--50853012 Score: 68
Period size: 21 Copynumber: 3.2 Consensus size: 21
50852934 AAAAAAGAAA
*
50852944 AAAAGAAAAAAAATAAAATGGG
1 AAAAGAAAAAAAA-AAAAGGGG
* *
50852966 -AAAGAGAAAGAAAAAAGGGG
1 AAAAGAAAAAAAAAAAAGGGG
*
50852986 AAAAGGAAAAAAAAAGAAAGGGA
1 AAAA-GAAAAAAAAA-AAAGGGG
50853009 AAAA
1 AAAA
50853013 TAGAAAAATA
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
20 7 0.18
21 13 0.34
22 8 0.21
23 10 0.26
ACGTcount: A:0.72, C:0.00, G:0.25, T:0.03
Consensus pattern (21 bp):
AAAAGAAAAAAAAAAAAGGGG
Found at i:50852998 original size:19 final size:19
Alignment explanation
Indices: 50852952--50853001 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 19
50852942 AAAAAAGAAA
*
50852952 AAAAATAAAATGGGAAAGAG
1 AAAAA-AAAAGGGGAAAGAG
50852972 AAAGAAAAAAGGGGAAA-AGG
1 AAA-AAAAAAGGGGAAAGA-G
50852992 AAAAAAAAAG
1 AAAAAAAAAG
50853002 AAAGGGAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 8 0.30
20 17 0.63
21 2 0.07
ACGTcount: A:0.70, C:0.00, G:0.26, T:0.04
Consensus pattern (19 bp):
AAAAAAAAAGGGGAAAGAG
Found at i:50865553 original size:22 final size:24
Alignment explanation
Indices: 50865517--50865560 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
50865507 TGTTATAGGA
50865517 AGGGCACGACGGTGGAG-GGTGTT
1 AGGGCACGACGGTGGAGAGGTGTT
*
50865540 AGGGC-CGATGGTGGAGAGGTG
1 AGGGCACGACGGTGGAGAGGTG
50865561 ATGGTATTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.18, C:0.11, G:0.55, T:0.16
Consensus pattern (24 bp):
AGGGCACGACGGTGGAGAGGTGTT
Found at i:50876733 original size:145 final size:153
Alignment explanation
Indices: 50876444--50876745 Score: 352
Period size: 145 Copynumber: 2.0 Consensus size: 153
50876434 TTTTAGGAGG
** * * * * *
50876444 AAAAAATTGTTTGTGTTGGAGTTTTAAGGGAGATATTGTGATAGTTTTAAGGTAGATTTTTATTG
1 AAAAAATTGTTTGAATTCGAGTTTTAAGAGAGAGATTATGATAATTTTAAGGTAGATTTTTATTG
* * * * *
50876509 TTTGTAATAATAATTTGTATGTTGTATGTTTATATTTTAATTTATTATTAATCTTTAGATTTAAT
66 TTTATAATAATAA-TTGTATATTATATGTTTATATTTTAA-TTATTATTAATATTTAGAATTAAT
*
50876574 ATTTAAGATTATATTTTTGTTTGTA
129 ATTTAAGAATATATTTTTGTTTGTA
* *
50876599 AAAAAATTGTTTGAATTCGAGTTTT-AGAGATAGATTATGATAATTTTAAGGTA-TTTTTTAGTT
1 AAAAAATTGTTTGAATTCGAGTTTTAAGAGAGAGATTATGATAATTTTAAGGTAGATTTTTA-TT
* *
50876662 -TTTATAATAATAA-T-TATATTATATGTTTATATTTT-A-T-TT-TTAATATTTAGAATTGATG
65 GTTTATAATAATAATTGTATATTATATGTTTATATTTTAATTATTATTAATATTTAGAATTAATA
*
50876720 TTTTAGAATATATTTTTGTTTGTA
130 TTTAAGAATATATTTTTGTTTGTA
50876744 AA
1 AA
50876746 TTTTTTTTTG
Statistics
Matches: 128, Mismatches: 18, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
145 39 0.30
146 2 0.02
147 1 0.01
149 1 0.01
150 19 0.15
151 1 0.01
153 18 0.14
154 25 0.20
155 22 0.17
ACGTcount: A:0.32, C:0.01, G:0.15, T:0.53
Consensus pattern (153 bp):
AAAAAATTGTTTGAATTCGAGTTTTAAGAGAGAGATTATGATAATTTTAAGGTAGATTTTTATTG
TTTATAATAATAATTGTATATTATATGTTTATATTTTAATTATTATTAATATTTAGAATTAATAT
TTAAGAATATATTTTTGTTTGTA
Found at i:50880364 original size:14 final size:15
Alignment explanation
Indices: 50880331--50880364 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
50880321 ATTTTCTGTT
50880331 ATTTAATTTAGTGAA
1 ATTTAATTTAGTGAA
50880346 ATTTAATTTA-TGAA
1 ATTTAATTTAGTGAA
*
50880360 TTTTA
1 ATTTA
50880365 TCTCTCTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (15 bp):
ATTTAATTTAGTGAA
Found at i:50887377 original size:15 final size:16
Alignment explanation
Indices: 50887351--50887381 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
50887341 ATAAGTGAGA
50887351 GATGATGGGATGATTG
1 GATGATGGGATGATTG
50887367 GATGA-GGGATGATTG
1 GATGATGGGATGATTG
50887382 AAAAAGTGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.26, C:0.00, G:0.45, T:0.29
Consensus pattern (16 bp):
GATGATGGGATGATTG
Found at i:50896656 original size:34 final size:34
Alignment explanation
Indices: 50896618--50896694 Score: 127
Period size: 34 Copynumber: 2.3 Consensus size: 34
50896608 ATGAATGGGT
50896618 GAGAGATGATGAGATGAGGGATGATTGAAAAAGG
1 GAGAGATGATGAGATGAGGGATGATTGAAAAAGG
* *
50896652 GAGAGATGATGGGATGAGGGATGATTGAAAAAGT
1 GAGAGATGATGAGATGAGGGATGATTGAAAAAGG
*
50896686 GAGAAATGA
1 GAGAGATGA
50896695 GCTTTTATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.42, C:0.00, G:0.40, T:0.18
Consensus pattern (34 bp):
GAGAGATGATGAGATGAGGGATGATTGAAAAAGG
Found at i:50896688 original size:19 final size:19
Alignment explanation
Indices: 50896632--50896688 Score: 50
Period size: 19 Copynumber: 3.2 Consensus size: 19
50896622 GATGATGAGA
50896632 TGAGGGATGATTGAAAAAG
1 TGAGGGATGATTGAAAAAG
* * **
50896651 GGAGAGATGA-TG--GGA-
1 TGAGGGATGATTGAAAAAG
50896666 TGAGGGATGATTGAAAAAG
1 TGAGGGATGATTGAAAAAG
50896685 TGAG
1 TGAG
50896689 AAATGAGCTT
Statistics
Matches: 26, Mismatches: 8, Indels: 8
0.62 0.19 0.19
Matches are distributed among these distances:
15 8 0.31
16 3 0.12
18 3 0.12
19 12 0.46
ACGTcount: A:0.39, C:0.00, G:0.42, T:0.19
Consensus pattern (19 bp):
TGAGGGATGATTGAAAAAG
Found at i:50905200 original size:16 final size:17
Alignment explanation
Indices: 50905171--50905203 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
50905161 TTTTCCTCTT
50905171 TTTCTTCGATTTTTTTC
1 TTTCTTCGATTTTTTTC
50905188 TTTCTTC-ATTTTTTTC
1 TTTCTTCGATTTTTTTC
50905204 GATTTTGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.06, C:0.18, G:0.03, T:0.73
Consensus pattern (17 bp):
TTTCTTCGATTTTTTTC
Found at i:50911735 original size:15 final size:15
Alignment explanation
Indices: 50911713--50911746 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
50911703 ATTAGAATGT
*
50911713 AAAA-ATTAAATTAA
1 AAAATATTAAAATAA
50911727 AAAATATTAAAATAA
1 AAAATATTAAAATAA
50911742 AAAAT
1 AAAAT
50911747 GGCTAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
AAAATATTAAAATAA
Found at i:50913446 original size:17 final size:15
Alignment explanation
Indices: 50913422--50913461 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 15
50913412 CTAATAGTAG
50913422 AATAATAAGAAACTAA
1 AATAATAAGAAAC-AA
*
50913438 AATTAATAATAAACAA
1 AA-TAATAAGAAACAA
50913454 AATAATAA
1 AATAATAA
50913462 TAAATCATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 6 0.27
16 6 0.27
17 10 0.45
ACGTcount: A:0.70, C:0.05, G:0.03, T:0.23
Consensus pattern (15 bp):
AATAATAAGAAACAA
Found at i:50913474 original size:16 final size:15
Alignment explanation
Indices: 50913422--50913502 Score: 69
Period size: 16 Copynumber: 5.3 Consensus size: 15
50913412 CTAATAGTAG
*
50913422 AATAATAAGAAACTAA
1 AATAATAATAAAC-AA
50913438 AATTAATAATAAACAA
1 AA-TAATAATAAACAA
*
50913454 AATAATAATAAATCAT
1 AATAATAATAAA-CAA
* *
50913470 TATAATAATATAA-TA
1 AATAATAATA-AACAA
50913485 AA-AATAATAAA-AA
1 AATAATAATAAACAA
50913498 AATAA
1 AATAA
50913503 ACACAAAAAG
Statistics
Matches: 54, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
13 5 0.09
14 9 0.17
15 11 0.20
16 17 0.31
17 12 0.22
ACGTcount: A:0.69, C:0.04, G:0.01, T:0.26
Consensus pattern (15 bp):
AATAATAATAAACAA
Found at i:50920368 original size:21 final size:21
Alignment explanation
Indices: 50920344--50920387 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
50920334 AGTTTATTGC
50920344 TATAAATTGTATGTA-ATTGAT
1 TATAAATTGTAT-TATATTGAT
* *
50920365 TATAATTTGTGTTATATTGAT
1 TATAAATTGTATTATATTGAT
50920386 TA
1 TA
50920388 GAATCATGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (21 bp):
TATAAATTGTATTATATTGAT
Found at i:50925208 original size:103 final size:105
Alignment explanation
Indices: 50925010--50925233 Score: 321
Period size: 103 Copynumber: 2.2 Consensus size: 105
50925000 AGAGTACGAG
* ***
50925010 AAAAAGTAAAAAAAAA--ATTTCGTGGTGGCCTAGCAATTGCCGGCACCACCTTTTTAAAATTTT
1 AAAAAGTAAAAAAAAATTATTTCGTGGTGGCCTAGCAATGGCCGGCACCACCTTTTTAAAATAAA
**
50925073 TTTTTACTTTTTTCGTGTCAAATAAGATATCAGTATACAA
66 AATTTACTTTTTTCGTGTCAAATAAGATATCAGTATACAA
* * *
50925113 AAAAAGTAAAAAAAAATTTTTTGGTGGTGGCCTGGCAATGGCCGGCACCACCTTTTTAAAA-AAA
1 AAAAAGTAAAAAAAAATTATTTCGTGGTGGCCTAGCAATGGCCGGCACCACCTTTTTAAAATAAA
* *
50925177 AATTTAC-TTTTTCGTGTCAGATAAGATATCAGTATACGA
66 AATTTACTTTTTTCGTGTCAAATAAGATATCAGTATACAA
50925216 AAAAAGTAAAAAAAAATT
1 AAAAAGTAAAAAAAAATT
50925234 GTGGTGCATT
Statistics
Matches: 108, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
103 64 0.59
104 5 0.05
105 39 0.36
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.31
Consensus pattern (105 bp):
AAAAAGTAAAAAAAAATTATTTCGTGGTGGCCTAGCAATGGCCGGCACCACCTTTTTAAAATAAA
AATTTACTTTTTTCGTGTCAAATAAGATATCAGTATACAA
Found at i:50925430 original size:109 final size:107
Alignment explanation
Indices: 50925242--50925449 Score: 296
Period size: 109 Copynumber: 1.9 Consensus size: 107
50925232 TTGTGGTGCA
* *
50925242 TTATCTGACACGAAAAAAAGTAAAAAAAAAAATTTTTAAAAGGTGGTGCCGGCCATTGCCAGGCC
1 TTATCTGACAC-AAAAAAAGTAAAAAAAAAAATTTTTAAAAGGTGGTGCCAGCCATTACCAGGCC
50925307 ACCACCAAA-TTTTTTTTTTACTTTTT-TCGTATACTGATATC
65 ACCACCAAATTTTTTTTTTTACTTTTTCTCGTATACTGATATC
*
50925348 TTATCTGACAC-AAAAAAGTAAAAAAAAAAATTGTTTTTTTAAAAGGTGGTGCCAGCCATTATCA
1 TTATCTGACACAAAAAAAGTAAAAAAAAAAA-----TTTTTAAAAGGTGGTGCCAGCCATTACCA
*
50925412 GGCCACCACTAAATTTTTTTTTTTTACTTTTTCTCGTA
61 GGCCACCACCAAA-TTTTTTTTTTTACTTTTTCTCGTA
50925450 CTCTGGTACC
Statistics
Matches: 90, Mismatches: 4, Indels: 10
0.87 0.04 0.10
Matches are distributed among these distances:
104 19 0.21
106 11 0.12
109 38 0.42
111 17 0.19
112 5 0.06
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.36
Consensus pattern (107 bp):
TTATCTGACACAAAAAAAGTAAAAAAAAAAATTTTTAAAAGGTGGTGCCAGCCATTACCAGGCCA
CCACCAAATTTTTTTTTTTACTTTTTCTCGTATACTGATATC
Found at i:50926727 original size:27 final size:29
Alignment explanation
Indices: 50926683--50926737 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
50926673 GTTCATCGTG
50926683 ACCTTGAGGCTATGTC-GTCGCAACATGA
1 ACCTTGAGGCTATGTCGGTCGCAACATGA
*
50926711 ACCTTGA-GCTATTTCGTGTCGCAACAT
1 ACCTTGAGGCTATGTCG-GTCGCAACAT
50926738 CGAGGGTACA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 7 0.29
28 7 0.29
29 10 0.42
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (29 bp):
ACCTTGAGGCTATGTCGGTCGCAACATGA
Found at i:50930828 original size:21 final size:23
Alignment explanation
Indices: 50930798--50930845 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 23
50930788 ATTGTTGTAG
50930798 ATTTAATTTTTTAATT-TTA-CA
1 ATTTAATTTTTTAATTCTTATCA
* *
50930819 ATTTACTTTTTTATTTCTTATCA
1 ATTTAATTTTTTAATTCTTATCA
50930842 ATTT
1 ATTT
50930846 TAGTTATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 14 0.61
22 3 0.13
23 6 0.26
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (23 bp):
ATTTAATTTTTTAATTCTTATCA
Found at i:50933742 original size:6 final size:6
Alignment explanation
Indices: 50933733--50933772 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
50933723 TCGCCCTCGC
50933733 CCTCAT CCTCAT CCTCAT CCTCAT CCTCAT CCTCAT CCTC
1 CCTCAT CCTCAT CCTCAT CCTCAT CCTCAT CCTCAT CCTC
50933773 TACTCAATAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.15, C:0.53, G:0.00, T:0.33
Consensus pattern (6 bp):
CCTCAT
Found at i:50937831 original size:21 final size:21
Alignment explanation
Indices: 50937807--50937849 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
50937797 CAACATATCC
50937807 ATCAAATAACATATATATATA
1 ATCAAATAACATATATATATA
50937828 ATCAAATAACATATATATATA
1 ATCAAATAACATATATATATA
50937849 A
1 A
50937850 ACACCATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.58, C:0.09, G:0.00, T:0.33
Consensus pattern (21 bp):
ATCAAATAACATATATATATA
Found at i:50944177 original size:124 final size:125
Alignment explanation
Indices: 50943953--50944219 Score: 349
Period size: 124 Copynumber: 2.1 Consensus size: 125
50943943 GGTCAAGCAG
* * * * *
50943953 GAACTACTATAGAAAAAGAGCGTTCATGTGGGAGCTTTGTTCAGTAATTTTGCTGATAGTGCATC
1 GAACTACTATAGAAAAAGAGCATCCACGTGGGAGCTTTGTTCAGTAATTTTGCTGACAATGCATC
* * * ** *
50944018 TTGCTTGAAGCGTTTTTTACACTATTTTTTTAGAACTTTCTTATCAAAATTATTTTTTAA
66 CTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACCATCTTATCAAAATTAATTTTTAA
* * *
50944078 GAACTATTGTAGAAAAAGAGCATCCACGTGGGAGCTTT-TTTAGTAATTTTGCTGACAATGCATC
1 GAACTACTATAGAAAAAGAGCATCCACGTGGGAGCTTTGTTCAGTAATTTTGCTGACAATGCATC
* * *
50944142 CTGCTTGAAGCGTTTTTGACATTATTTTTTCAGAACCATCTTCTCAAAATTAATTTTTCTTA
66 CTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACCATCTTATCAAAATTAA-TTTT-TAA
50944204 -AACTACTATAGAAAAA
1 GAACTACTATAGAAAAA
50944220 AAAATCCTTT
Statistics
Matches: 121, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
124 68 0.56
125 51 0.42
126 2 0.02
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.39
Consensus pattern (125 bp):
GAACTACTATAGAAAAAGAGCATCCACGTGGGAGCTTTGTTCAGTAATTTTGCTGACAATGCATC
CTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACCATCTTATCAAAATTAATTTTTAA
Found at i:50944363 original size:34 final size:33
Alignment explanation
Indices: 50944315--50944427 Score: 131
Period size: 34 Copynumber: 3.4 Consensus size: 33
50944305 TTTAAAAAAA
50944315 TAAACCCTAATTTAATTAATTTTCTTAAAAACTC
1 TAAACCCTAATTTAATTAATTTT-TTAAAAACTC
* * *
50944349 TAAACCCTATTTTAATTAATTTATTTAAAACCCC
1 TAAACCCTAATTTAATTAATTT-TTTAAAAACTC
* * *
50944383 TAAAACATAATTTAATTAA--TTTAAAAAACTC
1 TAAACCCTAATTTAATTAATTTTTTAAAAACTC
*
50944414 TAAACCTTAATTTA
1 TAAACCCTAATTTA
50944428 TTTTTTAAAA
Statistics
Matches: 67, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
31 20 0.30
32 1 0.01
34 45 0.67
35 1 0.01
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.40
Consensus pattern (33 bp):
TAAACCCTAATTTAATTAATTTTTTAAAAACTC
Found at i:50949753 original size:21 final size:24
Alignment explanation
Indices: 50949729--50949773 Score: 60
Period size: 21 Copynumber: 2.0 Consensus size: 24
50949719 ATAACTAAAA
50949729 GAAAGA-CGAA-AGAGAG-GAAAG
1 GAAAGATCGAACAGAGAGCGAAAG
*
50949750 GAAAGATCTAACAGAGAGCGAAAG
1 GAAAGATCGAACAGAGAGCGAAAG
50949774 CGAGAGAGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 6 0.30
22 3 0.15
23 6 0.30
24 5 0.25
ACGTcount: A:0.53, C:0.09, G:0.33, T:0.04
Consensus pattern (24 bp):
GAAAGATCGAACAGAGAGCGAAAG
Found at i:50951835 original size:126 final size:126
Alignment explanation
Indices: 50951519--50952166 Score: 870
Period size: 126 Copynumber: 5.2 Consensus size: 126
50951509 GGTTTTGTGT
* * * * * * *
50951519 TTTTTCTACACTAGTTTCAGAAAAATTAATTTTGAGAAGACGGTTCTGAAAAGATAATGTCAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTAAAAA
* * * * * *
50951584 ACGCTTCAAGCAGGATACAATGTCAGCAAAATTACTAAAAAAAGCCCCCACGTGGATGCTT
66 ATGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTC
* *
50951645 TTTTTCTATAGTAGTTCCTGAAAAAAATAATTTTAAGAAGACGGTTCTGAAAAAATAGTGTAAAA
1 TTTTTCTACAGTAGTTCCTG-AAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTAAAA
* *
50951710 AATGCTTCAAGCAGGATGCACTGTCAACAAAATTACTGAAAAAAGCTCTCACGTGGATGCTC
65 AATGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTC
* * * *
50951772 TTTTTCTATAATAATTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTATAAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTAAAAA
** * * * * *
50951837 ACACTTCAAGAAAGATGTACTATTAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTC
66 ATGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTC
** *
50951898 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGATAGTTTTGAAAAAA-AGTGT-AAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTAAAAA
* * * * *
50951961 ATGCTTCAAGTAGGATGCAGTGTCAGCAAAATTGCTGAAAAAAGCTCCCACGTGGACGCTT
66 ATGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTC
** *
50952022 TTTTTCTACAGTAGTTCCT-AAACAAATAATTTTGAGAAGACAATTCTGAAAAAATAGTGTAGAA
1 TTTTTCTACAGTAGTTCCTGAAA-AAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTAAAA
* * *
50952086 AATGCTTCGAGCAAGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCCACGTGGATGCTC
65 AATGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTC
*
50952148 TTTTTCTACAATAGTTCCT
1 TTTTTCTACAGTAGTTCCT
50952167 ACTTGGCCTT
Statistics
Matches: 457, Mismatches: 61, Indels: 8
0.87 0.12 0.02
Matches are distributed among these distances:
123 3 0.01
124 101 0.22
125 9 0.02
126 233 0.51
127 111 0.24
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.29
Consensus pattern (126 bp):
TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTAAAAA
ATGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTC
Found at i:50952076 original size:250 final size:252
Alignment explanation
Indices: 50951518--50952166 Score: 860
Period size: 250 Copynumber: 2.6 Consensus size: 252
50951508 AGGTTTTGTG
* * * * *
50951518 TTTTTTCTACACTAGTTTC-AGAAAAATTAATTTTGAGAAGACGGTTCTGAAAAGATAATGTCAA
1 TTTTTTCTACAATAGTTCCTA-AAAAA-TAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTAAA
* * * * *
50951582 AAACGCTTCAAGCAGGA--TACAATGTCAGCAAAATTACTAAAAAAAGCCCCCACGTGGATGCTT
64 AAACGCTTCAAGCAAGATGTACTAT-T-AGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTC
* *
50951645 TTTTTCTATAGTAGTTCCTGAAAAAAATAATTTTAAGAAGACGGTTCTGAAAAAATAGTGTAAAA
127 TTTTTCTACAGTAGTTCCTGAAAAAAATAATTTTAAGAAGACAGTTCTGAAAAAATAGTGTAAAA
* *
50951710 AATGCTTCAAGCAGGATGCACTGTCAACAAAATTACTGAAAAAAGCTCTCACGTGGATGCT
192 AATGCTTCAAGCAGGATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACGTGGACGCT
* * * *
50951771 CTTTTTCTATAATAATTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTATAAAA
1 TTTTTTCTACAATAGTTCCT-AAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTAAAA
* *
50951836 AACACTTCAAGAAAGATGTACTATTAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTCTTT
65 AACGCTTCAAGCAAGATGTACTATTAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTCTTT
* * *
50951901 TTCTACAGTAGTTCCTG-AAAAAATAATTTTGAGAAGATAGTTTTGAAAAAA-AGTGT-AAAAAT
130 TTCTACAGTAGTTCCTGAAAAAAATAATTTTAAGAAGACAGTTCTGAAAAAATAGTGTAAAAAAT
* * * *
50951963 GCTTCAAGTAGGATGCAGTGTCAGCAAAATTGCTGAAAAAAGCTCCCACGTGGACGCT
195 GCTTCAAGCAGGATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACGTGGACGCT
* ** *
50952021 TTTTTTCTACAGTAGTTCCTAAACAAATAATTTTGAGAAGACAATTCTGAAAAAATAGTGTAGAA
1 TTTTTTCTACAATAGTTCCTAAA-AAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTAAAA
* * * * * *
50952086 AATGCTTCGAGCAAGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCCACGTGGATGCTCTTT
65 AACGCTTCAAGCAAGATGTACTATTAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTCTTT
*
50952151 TTCTACAATAGTTCCT
130 TTCTACAGTAGTTCCT
50952167 ACTTGGCCTT
Statistics
Matches: 347, Mismatches: 44, Indels: 13
0.86 0.11 0.03
Matches are distributed among these distances:
249 3 0.01
250 183 0.53
251 5 0.01
252 30 0.09
253 114 0.33
254 6 0.02
255 6 0.02
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.29
Consensus pattern (252 bp):
TTTTTTCTACAATAGTTCCTAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTAAAAA
ACGCTTCAAGCAAGATGTACTATTAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTCTTTT
TCTACAGTAGTTCCTGAAAAAAATAATTTTAAGAAGACAGTTCTGAAAAAATAGTGTAAAAAATG
CTTCAAGCAGGATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACGTGGACGCT
Found at i:50952567 original size:16 final size:16
Alignment explanation
Indices: 50952546--50952578 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
50952536 GACTCATCTC
50952546 ACTAGTGTATCACCCT
1 ACTAGTGTATCACCCT
50952562 ACTAGTGTATCACCCT
1 ACTAGTGTATCACCCT
50952578 A
1 A
50952579 TCTTGAGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.30
Consensus pattern (16 bp):
ACTAGTGTATCACCCT
Found at i:50955723 original size:18 final size:18
Alignment explanation
Indices: 50955697--50955736 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
50955687 GACTGGGAAA
*
50955697 AGGAAACATATAAGGGTT
1 AGGAAACATATAAGGGCT
*
50955715 AGGACACATATAAGGGCT
1 AGGAAACATATAAGGGCT
50955733 AGGA
1 AGGA
50955737 TACGCACTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.10, G:0.30, T:0.17
Consensus pattern (18 bp):
AGGAAACATATAAGGGCT
Found at i:50967790 original size:28 final size:27
Alignment explanation
Indices: 50967759--50967813 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
50967749 AAAAATAATT
*
50967759 AAAATTCAA-TATGTTAATAATTTAAGTG
1 AAAATT-AATTAT-TTAATAATTAAAGTG
*
50967787 AAAATTAATTATTTTATAATTAAAGTG
1 AAAATTAATTATTTAATAATTAAAGTG
50967814 TGAATTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 15 0.62
28 9 0.38
ACGTcount: A:0.47, C:0.02, G:0.09, T:0.42
Consensus pattern (27 bp):
AAAATTAATTATTTAATAATTAAAGTG
Found at i:50974380 original size:45 final size:45
Alignment explanation
Indices: 50974324--50974526 Score: 239
Period size: 45 Copynumber: 4.5 Consensus size: 45
50974314 CAAATAAAAA
* *
50974324 CATAGTTGAAAGACACTATGGCAATAT-ATCAGAAATGAATAAGAC
1 CATAGTTGAAAGACACTATGGCAACATGA-CAAAAATGAATAAGAC
* * *
50974369 CATAGTTGAAAGAAATTATGGCATCATGTA-AAAAATGAATAAGAC
1 CATAGTTGAAAGACACTATGGCAACATG-ACAAAAATGAATAAGAC
* * *
50974414 TAAAGTTGAAAGACACTATGGAAACATGACAAAAATGAATAAGAC
1 CATAGTTGAAAGACACTATGGCAACATGACAAAAATGAATAAGAC
** **
50974459 CATAGTTGAAAGACACTATCCCAACATGACGGAAATGAATAAGAC
1 CATAGTTGAAAGACACTATGGCAACATGACAAAAATGAATAAGAC
* * *
50974504 CGTAGCTGAAAAACACTATGGCA
1 CATAGTTGAAAGACACTATGGCA
50974527 TCCTTGAACA
Statistics
Matches: 132, Mismatches: 23, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
44 1 0.01
45 130 0.98
47 1 0.01
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.20
Consensus pattern (45 bp):
CATAGTTGAAAGACACTATGGCAACATGACAAAAATGAATAAGAC
Found at i:50977515 original size:16 final size:16
Alignment explanation
Indices: 50977493--50977529 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
50977483 TGATTCAATA
50977493 ATGGTTATGGATATTT
1 ATGGTTATGGATATTT
*
50977509 GTGGTTATGGATATTT
1 ATGGTTATGGATATTT
50977525 ATGGT
1 ATGGT
50977530 GATATTTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.30, T:0.49
Consensus pattern (16 bp):
ATGGTTATGGATATTT
Found at i:50996887 original size:40 final size:40
Alignment explanation
Indices: 50996843--50996975 Score: 221
Period size: 40 Copynumber: 3.3 Consensus size: 40
50996833 AGGTTTTGTT
* *
50996843 TCTAGTAGGCTTATTGTCAGTGAAATTTTCAGGCTTAATG
1 TCTAGCAGGCTTATTGTCAGTGAAATTTTCAGACTTAATG
*
50996883 TCTAGCAGGCTTATTGCCAGTGAAATTTTCAGACTTAATG
1 TCTAGCAGGCTTATTGTCAGTGAAATTTTCAGACTTAATG
*
50996923 TCTAGCAGGCTTATTGTTAGTGAAATTTTCAGACTTAATG
1 TCTAGCAGGCTTATTGTCAGTGAAATTTTCAGACTTAATG
*
50996963 TCTAACAGGCTTA
1 TCTAGCAGGCTTA
50996976 ATGCCGGTGT
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 87 1.00
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.38
Consensus pattern (40 bp):
TCTAGCAGGCTTATTGTCAGTGAAATTTTCAGACTTAATG
Found at i:51000523 original size:273 final size:271
Alignment explanation
Indices: 51000038--51000583 Score: 934
Period size: 273 Copynumber: 2.0 Consensus size: 271
51000028 TGTCGTTACG
*
51000038 TATTTTATTAAGAATTTACAACAAAAAATCTTGTTGTTAAAATTAATAAGAAGAAAAATAAATTA
1 TATTTTATTAAGAATTGACAACAAAAAATCTTGTTGTTAAAATTAATAAGAAGAAAAATAAATTA
*
51000103 CGTAACAACATTTTAGCCATAGCTAATATTATGAGATTTAACAACAATTTATTTTATCATTATGT
66 CGTAACAACATTTTAGCCATAGCTAATATTATAAGATTTAACAACAATTTATTTTATCATTATGT
*
51000168 ATAAAATAAAATATTCACAATCACTAACCTTGTTGTTAGGATTAGTATTTTAAAAAATTAAATTT
131 ATAAAATAAAAAATTCACAATCACTAACCTTGTTGTTAGGATTAGTATTTTAAAAAATTAAATTT
*
51000233 AATAGCGACATCTAAAATTGAAAATACTTCAATTTCCACAATAACATTTAATGAAATTAATTATT
196 AATAGCGACATCTAAAATTGAAAATACTTCAATTTCCACAATAACATTTAATGAAATTAATTATA
51000298 ACATCACAACA
261 ACATCACAACA
*
51000309 TATTTTATTAAGAATTGACAACAACAAATCTTGTTGTTAAAATTAATAAGAAGAAAAATAAATTA
1 TATTTTATTAAGAATTGACAACAAAAAATCTTGTTGTTAAAATTAATAAGAAGAAAAATAAATTA
* * *
51000374 CGTAACAACATTTTAAAGTCATAGCTAATATTATAATATTTAACAACAATTTATTTTATCGTTAT
66 CGTAACAACATTTT--AGCCATAGCTAATATTATAAGATTTAACAACAATTTATTTTATCATTAT
*
51000439 GTATAAAATAAAAAATTTCACAATCGCTAACC-TGTTGTT-GGTATTAGTATTTTAAAAAATTAA
129 GTATAAAATAAAAAA-TTCACAATCACTAACCTTGTTGTTAGG-ATTAGTATTTTAAAAAATTAA
* * *
51000502 ATTTAATAGCGGCATCTAAAATTGCAAATACTTCAATTTCCACAATAACATTTAATGAAGTTAAT
192 ATTTAATAGCGACATCTAAAATTGAAAATACTTCAATTTCCACAATAACATTTAATGAAATTAAT
51000567 TATAACATCACAACA
257 TATAACATCACAACA
51000582 TA
1 TA
51000584 AAATCTCCAG
Statistics
Matches: 259, Mismatches: 12, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
271 77 0.30
272 2 0.01
273 165 0.64
274 15 0.06
ACGTcount: A:0.45, C:0.12, G:0.08, T:0.36
Consensus pattern (271 bp):
TATTTTATTAAGAATTGACAACAAAAAATCTTGTTGTTAAAATTAATAAGAAGAAAAATAAATTA
CGTAACAACATTTTAGCCATAGCTAATATTATAAGATTTAACAACAATTTATTTTATCATTATGT
ATAAAATAAAAAATTCACAATCACTAACCTTGTTGTTAGGATTAGTATTTTAAAAAATTAAATTT
AATAGCGACATCTAAAATTGAAAATACTTCAATTTCCACAATAACATTTAATGAAATTAATTATA
ACATCACAACA
Found at i:51002040 original size:13 final size:13
Alignment explanation
Indices: 51002024--51002049 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51002014 ATATTTTAAT
51002024 TTTATTTTGTGTG
1 TTTATTTTGTGTG
51002037 TTTATTTTGTGTG
1 TTTATTTTGTGTG
51002050 CATTTGATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.23, T:0.69
Consensus pattern (13 bp):
TTTATTTTGTGTG
Found at i:51003362 original size:114 final size:114
Alignment explanation
Indices: 51003008--51003343 Score: 636
Period size: 114 Copynumber: 2.9 Consensus size: 114
51002998 ATCAGCATAT
*
51003008 ATATATGTGTATATCTATTGTATATTTGATGAGCTATAATTAAAAATATATGAATTGAAATTAGT
1 ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAATATATGAATTGAAATTAGT
51003073 TAAGTATGAATGTTATATATATGCATAAATGAAGTTCGAATATATGTAA
66 TAAGTATGAATGTTATATATATGCATAAATGAAGTTCGAATATATGTAA
51003122 ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAATATATGAATTGAAATTAGT
1 ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAATATATGAATTGAAATTAGT
51003187 TAAGTATGAATGTTATATATATGCATAAATGAAGTTCGAATATATGTAA
66 TAAGTATGAATGTTATATATATGCATAAATGAAGTTCGAATATATGTAA
* * *
51003236 ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTGAAAGTATATAAATTGAAATTAGT
1 ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAATATATGAATTGAAATTAGT
51003301 TAAGTATGAATGTTATATATATGCATAAATGAAGTTCGAATAT
66 TAAGTATGAATGTTATATATATGCATAAATGAAGTTCGAATAT
51003344 GTATATATGA
Statistics
Matches: 218, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
114 218 1.00
ACGTcount: A:0.41, C:0.04, G:0.15, T:0.40
Consensus pattern (114 bp):
ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAATATATGAATTGAAATTAGT
TAAGTATGAATGTTATATATATGCATAAATGAAGTTCGAATATATGTAA
Found at i:51003879 original size:41 final size:41
Alignment explanation
Indices: 51003828--51004056 Score: 325
Period size: 41 Copynumber: 5.6 Consensus size: 41
51003818 CAGACTTTAC
* * *
51003828 GTCTACCAGGCTAAGTGCCGGTGATCTGAAACATGCTATAA
1 GTCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAA
* *
51003869 GTCTAGCAGGCTAAGTGCCGGTGATTTGAATCAGGTTATAA
1 GTCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAA
**
51003910 ACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAA
1 GTCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAA
* *
51003951 GTCTAGCAGGCTAAGTGCCGATGATCTGAATCAGGTTATAA
1 GTCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAA
** *
51003992 ACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGACTATAA
1 GTCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAA
*
51004033 G-CTTAGCAGGTTAAGTGCCGGTGA
1 GTC-TAGCAGGCTAAGTGCCGGTGA
51004057 ATATGTTAAA
Statistics
Matches: 167, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
40 1 0.01
41 166 0.99
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (41 bp):
GTCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAA
Found at i:51003934 original size:82 final size:81
Alignment explanation
Indices: 51003834--51004056 Score: 367
Period size: 82 Copynumber: 2.7 Consensus size: 81
51003824 TTACGTCTAC
* *
51003834 CAGGCTAAGTGCCGGTGATCTGAAACATGCTATAAGTCTAGCAGGCTAAGTGCCGGTGATTTGAA
1 CAGGCTAAGTGCCGGTGATCTGAATCA-GCTATAAGTCTAGCAGGCTAAGTGCCGGTGATCTGAA
51003899 TCAGGTTATAAACCTAG
65 TCAGGTTATAAACCTAG
*
51003916 CAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGTCTAGCAGGCTAAGTGCCGATGATCTGAA
1 CAGGCTAAGTGCCGGTGATCTGAATCA-GCTATAAGTCTAGCAGGCTAAGTGCCGGTGATCTGAA
51003981 TCAGGTTATAAACCTAG
65 TCAGGTTATAAACCTAG
*
51003998 CAGGCTAAGTGCCGGTGATCTGAATCAGACTATAAG-CTTAGCAGGTTAAGTGCCGGTGA
1 CAGGCTAAGTGCCGGTGATCTGAATCAG-CTATAAGTC-TAGCAGGCTAAGTGCCGGTGA
51004057 ATATGTTAAA
Statistics
Matches: 133, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
81 2 0.02
82 131 0.98
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25
Consensus pattern (81 bp):
CAGGCTAAGTGCCGGTGATCTGAATCAGCTATAAGTCTAGCAGGCTAAGTGCCGGTGATCTGAAT
CAGGTTATAAACCTAG
Found at i:51011007 original size:114 final size:114
Alignment explanation
Indices: 51010653--51010988 Score: 636
Period size: 114 Copynumber: 2.9 Consensus size: 114
51010643 CAGCATATAT
*
51010653 ATATATGTGTATATCTATTGTATATTTGATGAGCTATAATTAAAAATATATGAATTGAAATTAGT
1 ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAATATATGAATTGAAATTAGT
51010718 TAAGTATGAATGTTATATATATGCATAAATGAAGTTCGAATATATGTAA
66 TAAGTATGAATGTTATATATATGCATAAATGAAGTTCGAATATATGTAA
51010767 ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAATATATGAATTGAAATTAGT
1 ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAATATATGAATTGAAATTAGT
51010832 TAAGTATGAATGTTATATATATGCATAAATGAAGTTCGAATATATGTAA
66 TAAGTATGAATGTTATATATATGCATAAATGAAGTTCGAATATATGTAA
* * *
51010881 ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTGAAAGTATATAAATTGAAATTAGT
1 ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAATATATGAATTGAAATTAGT
51010946 TAAGTATGAATGTTATATATATGCATAAATGAAGTTCGAATAT
66 TAAGTATGAATGTTATATATATGCATAAATGAAGTTCGAATAT
51010989 GTATATATGA
Statistics
Matches: 218, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
114 218 1.00
ACGTcount: A:0.41, C:0.04, G:0.15, T:0.40
Consensus pattern (114 bp):
ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAATATATGAATTGAAATTAGT
TAAGTATGAATGTTATATATATGCATAAATGAAGTTCGAATATATGTAA
Found at i:51011527 original size:41 final size:41
Alignment explanation
Indices: 51011475--51011660 Score: 239
Period size: 41 Copynumber: 4.5 Consensus size: 41
51011465 GACTTTACGT
* * *
51011475 CTAGCAAGCTAAGTGCCGGTGATCTGAAACATGCTATAAGT
1 CTAGCAGGCTAAGTGCCGGTGATCTGAAACAGGCTATAAGC
* * * *
51011516 CTAGCAGGCTAAGTGTCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAAACAGGCTATAAGC
* * *
51011557 CTAGCAGGCTAAGTGCCGGTGATCAGAATA-AGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAA-ACAGGCTATAAGC
*
51011598 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAAACAGGCTATAAGC
* *
51011639 TTAGCAGGTTAAGTGCCGGTGA
1 CTAGCAGGCTAAGTGCCGGTGA
51011661 ATATGTTAAA
Statistics
Matches: 127, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
41 127 1.00
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGATCTGAAACAGGCTATAAGC
Found at i:51014628 original size:3 final size:3
Alignment explanation
Indices: 51014620--51014690 Score: 133
Period size: 3 Copynumber: 23.7 Consensus size: 3
51014610 TATAACGATA
51014620 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
*
51014668 AAG AAG AAA AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AA
51014691 ATAGACGCAC
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:51030771 original size:39 final size:39
Alignment explanation
Indices: 51030717--51030794 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
51030707 TTACATGCTT
51030717 AATTGAAATATTAGTTGATATGATACTACGAAAATTCTC
1 AATTGAAATATTAGTTGATATGATACTACGAAAATTCTC
51030756 AATTGAAATATTAGTTGATATGATACTACGAAAATTCTC
1 AATTGAAATATTAGTTGATATGATACTACGAAAATTCTC
51030795 GACAAGATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.36
Consensus pattern (39 bp):
AATTGAAATATTAGTTGATATGATACTACGAAAATTCTC
Found at i:51032129 original size:55 final size:55
Alignment explanation
Indices: 51032045--51032176 Score: 194
Period size: 55 Copynumber: 2.4 Consensus size: 55
51032035 TTTAATGAAG
* * *
51032045 CCAAGTCAGTGAGTTACATGGGCTAGTCACAC-GAGCGTGTGGTTAGTCGTGTGAC
1 CCAAGTCAGTGAGTTACACGGGCTAGTCACACAG-GCATGTGGTTAGCCGTGTGAC
* * *
51032100 CCAAGTGAGTCAGTTACACGGGCTAGTCACACAGGCATGTGGTTGGCCGTGTGAC
1 CCAAGTCAGTGAGTTACACGGGCTAGTCACACAGGCATGTGGTTAGCCGTGTGAC
51032155 CCAAGTCAGTGAGTTACACGGG
1 CCAAGTCAGTGAGTTACACGGG
51032177 GTTGAACACG
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
55 67 0.99
56 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.33, T:0.23
Consensus pattern (55 bp):
CCAAGTCAGTGAGTTACACGGGCTAGTCACACAGGCATGTGGTTAGCCGTGTGAC
Found at i:51046537 original size:6 final size:6
Alignment explanation
Indices: 51046526--51046560 Score: 61
Period size: 6 Copynumber: 5.7 Consensus size: 6
51046516 AAAACCACCG
51046526 CTTTCT CTTTCT CTTTCT CTTTCT CTTTCTT CTTT
1 CTTTCT CTTTCT CTTTCT CTTTCT CTTTC-T CTTT
51046561 TTATAGGGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 23 0.82
7 5 0.18
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (6 bp):
CTTTCT
Found at i:51050461 original size:22 final size:22
Alignment explanation
Indices: 51050428--51050569 Score: 171
Period size: 22 Copynumber: 6.3 Consensus size: 22
51050418 CAAAAATATT
*
51050428 GATACTTAACCAAAAAGGTATC
1 GATACTTGACCAAAAAGGTATC
*
51050450 GATACATGACCAAAAAGGTATC
1 GATACTTGACCAAAAAGGTATC
*
51050472 AATACTTGACCAAAAAGGTATC
1 GATACTTGACCAAAAAGGTATC
*
51050494 GATACTTAGCTAAATCAAAAA--TATC
1 GATACTT-G----ACCAAAAAGGTATC
*
51050519 GATACTTAACCAAAAAGGTATC
1 GATACTTGACCAAAAAGGTATC
*
51050541 GATACTTGACCAAAAAGGTATT
1 GATACTTGACCAAAAAGGTATC
51050563 GATACTT
1 GATACTT
51050570 TTGACCTGGA
Statistics
Matches: 103, Mismatches: 10, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
20 7 0.07
22 77 0.75
23 1 0.01
25 11 0.11
27 7 0.07
ACGTcount: A:0.44, C:0.17, G:0.14, T:0.25
Consensus pattern (22 bp):
GATACTTGACCAAAAAGGTATC
Found at i:51050539 original size:47 final size:44
Alignment explanation
Indices: 51050417--51050547 Score: 158
Period size: 47 Copynumber: 2.9 Consensus size: 44
51050407 AATTGATATT
* *
51050417 TCAAAAATATTGATACTTAACCAAAAAGGTATCGATAC--ATGA
1 TCAAAAATATCGATACTTAACCAAAAAGGTATCGATACTTATAA
* * *
51050459 CCAAAAAGGTATCAATACTTGACCAAAAAGGTATCGATACTTAGCTAAA
1 TCAAAAA--TATCGATACTTAACCAAAAAGGTATCGATACTTA--T-AA
51050508 TCAAAAATATCGATACTTAACCAAAAAGGTATCGATACTT
1 TCAAAAATATCGATACTTAACCAAAAAGGTATCGATACTT
51050548 GACCAAAAAG
Statistics
Matches: 74, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
42 6 0.08
44 28 0.38
46 1 0.01
47 31 0.42
48 1 0.01
49 7 0.09
ACGTcount: A:0.46, C:0.17, G:0.12, T:0.25
Consensus pattern (44 bp):
TCAAAAATATCGATACTTAACCAAAAAGGTATCGATACTTATAA
Found at i:51050951 original size:19 final size:20
Alignment explanation
Indices: 51050926--51050964 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
51050916 GGCCTAAATA
*
51050926 AAAAATTGACATACATTTTC
1 AAAATTTGACATACATTTTC
*
51050946 AAAATTTGACATTCATTTT
1 AAAATTTGACATACATTTT
51050965 TACTTTGAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.13, G:0.05, T:0.41
Consensus pattern (20 bp):
AAAATTTGACATACATTTTC
Found at i:51056020 original size:12 final size:12
Alignment explanation
Indices: 51056003--51056029 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
51055993 TTTCCTCTCA
51056003 TCTATTGTAAGC
1 TCTATTGTAAGC
51056015 TCTATTGTAAGC
1 TCTATTGTAAGC
51056027 TCT
1 TCT
51056030 TTTAGAGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.19, G:0.15, T:0.44
Consensus pattern (12 bp):
TCTATTGTAAGC
Found at i:51058974 original size:22 final size:22
Alignment explanation
Indices: 51058949--51058991 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
51058939 CGATAAGATC
51058949 ATTGACTTGTATAAACAACATT
1 ATTGACTTGTATAAACAACATT
* *
51058971 ATTGGCTTGTATGAACAACAT
1 ATTGACTTGTATAAACAACAT
51058992 CATTCTAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (22 bp):
ATTGACTTGTATAAACAACATT
Found at i:51064461 original size:18 final size:18
Alignment explanation
Indices: 51064435--51064470 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
51064425 ATAATCCACG
* *
51064435 ACAAGAGAATTACAATCA
1 ACAACAGAACTACAATCA
51064453 ACAACAGAACTACAATCA
1 ACAACAGAACTACAATCA
51064471 GCATCCTCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.56, C:0.22, G:0.08, T:0.14
Consensus pattern (18 bp):
ACAACAGAACTACAATCA
Found at i:51071689 original size:18 final size:18
Alignment explanation
Indices: 51071647--51071692 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
51071637 ATGAAGTTGA
*
51071647 TGTTGCAGAAGCAGAAGT
1 TGTTGCTGAAGCAGAAGT
51071665 TGTTGCTGAAG-AGGAAGT
1 TGTTGCTGAAGCA-GAAGT
51071683 TGTTGCTGAA
1 TGTTGCTGAA
51071693 AATGAGAATG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 1 0.04
18 25 0.96
ACGTcount: A:0.28, C:0.09, G:0.35, T:0.28
Consensus pattern (18 bp):
TGTTGCTGAAGCAGAAGT
Found at i:51075889 original size:19 final size:19
Alignment explanation
Indices: 51075842--51075877 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
51075832 GAACACAACT
51075842 TCTTTGTTTCTTCATTTTA
1 TCTTTGTTTCTTCATTTTA
51075861 TCTTTGTTTCTTC-TTTT
1 TCTTTGTTTCTTCATTTT
51075878 TCATTTGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.06, C:0.17, G:0.06, T:0.72
Consensus pattern (19 bp):
TCTTTGTTTCTTCATTTTA
Found at i:51083796 original size:12 final size:11
Alignment explanation
Indices: 51083761--51083796 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
51083751 AAATAAACTA
*
51083761 TTTTTTCCTTT
1 TTTTTTTCTTT
51083772 TTTTTTTCTTT
1 TTTTTTTCTTT
*
51083783 TTTTTTTCTAT
1 TTTTTTTCTTT
51083794 TTT
1 TTT
51083797 AGGTTTTGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.03, C:0.11, G:0.00, T:0.86
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:51085577 original size:14 final size:13
Alignment explanation
Indices: 51085557--51085595 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
51085547 ATTTTAAAAA
*
51085557 ATAAAATTATTTC
1 ATAAAATAATTTC
*
51085570 ATTAAAATAATGTC
1 A-TAAAATAATTTC
51085584 ATAAAATAATTT
1 ATAAAATAATTT
51085596 TTTTATATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (13 bp):
ATAAAATAATTTC
Found at i:51092284 original size:5 final size:5
Alignment explanation
Indices: 51092274--51092308 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
51092264 TTTGAGATTT
* *
51092274 AACTG AACTG AACTG AACTG AAATG AAATG AACTG
1 AACTG AACTG AACTG AACTG AACTG AACTG AACTG
51092309 TATGTATATG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.46, C:0.14, G:0.20, T:0.20
Consensus pattern (5 bp):
AACTG
Found at i:51097912 original size:6 final size:6
Alignment explanation
Indices: 51097901--51097936 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
51097891 AGAATAGAAC
51097901 CTATTT CTATTT CTATTT CTATTT CTATTT CTATTT
1 CTATTT CTATTT CTATTT CTATTT CTATTT CTATTT
51097937 GGTTGGTCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.67
Consensus pattern (6 bp):
CTATTT
Found at i:51102431 original size:26 final size:26
Alignment explanation
Indices: 51102360--51102428 Score: 88
Period size: 26 Copynumber: 2.7 Consensus size: 26
51102350 TTCTCATCCT
*
51102360 AATTTTACTCC-AGTAAAATTTTAAC
1 AATTTTACCCCGAGTAAAATTTTAAC
* *
51102385 AATTTTACCCCTAGTAAAATTTTGAC
1 AATTTTACCCCGAGTAAAATTTTAAC
*
51102411 GATTTTACCCCGA-TAAAA
1 AATTTTACCCCGAGTAAAA
51102429 ATTCGATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 15 0.38
26 24 0.62
ACGTcount: A:0.38, C:0.19, G:0.07, T:0.36
Consensus pattern (26 bp):
AATTTTACCCCGAGTAAAATTTTAAC
Found at i:51112120 original size:412 final size:407
Alignment explanation
Indices: 51110645--51112273 Score: 2857
Period size: 407 Copynumber: 4.0 Consensus size: 407
51110635 TTGTGTGATA
* * * *
51110645 ATTTCTTTTTTTCATAGAGAGGGACTTGACTTTAAGCTTGTTTGTTTTTTTAGTGAAAGGCTAGA
1 ATTTCTTTTTTTAATAGAGAGAGACTTGACTTTAAG-TT-TGT-TTTTTTTAGTGAAAGGCTGGA
* * * * *
51110710 TTATATTAAGGAAATATGCAATAACCTATTTTCAATGGTTTTGAACACTATGGTTACTTCACCAC
63 TTATATTAAGGAAATATGCAACAACCTGTTTTCAATGGTGTTGAACACTATGGTTTCTTGACCAC
* *
51110775 AATTCCGACCAATGAGTTAGAAAATTTTATTTATTTAATATTTATAAAGTTGTTGGAGTGTAGTA
128 AATTCCGACCAATGAGTTAGAAAATTTAATTTATTTAATATTTATAAAGTTGTTGAAGTGTAGTA
* *
51110840 TTAAAATTTGGTCT-GTAACTTTAAAGTTTGAATAGTTAATTAAGTAAAAAGGACTAAATCGTAA
193 TTAAAATTTGGTCTAGTAATTTTAAAGTTTGGATAGTTAATTAAGTAAAAAGGACTAAATCGTAA
*
51110904 AAGCTACAAAAGTTAATCACTATTAGTTTATAGGTGCTTAATGGTTTTATAAACATGAAGTGATG
258 AAGCTACAAAAGTTAATCACTATTAGTTTATAGGTGCTTAATGGTTTTATAAACATGAAATGATG
51110969 GTTTTAAAAGGTAATTAGACCTTATTACTTTATAATGGATGGTTAAGATGTAGTTATTTATGAAA
323 GTTTTAAAAGGTAATTAGACCTTATTACTTTATAATGGATGGTTAAGATGTAGTTATTTATGAAA
51111034 TTTTAGTTAATATTGTTATG
388 TTTTAGTTAATATTGTTATG
51111054 ATTTCTTTTTTTAATAGAGAGAGACTTGACTTTAAGTTTGTTTTTTTTAGTGAAAGGCTGGATTA
1 ATTTCTTTTTTTAATAGAGAGAGACTTGACTTTAAGTTTGTTTTTTTTAGTGAAAGGCTGGATTA
51111119 TATTAAGGAAATATGCAACAACCTGTTTTCAATGGTGTTGAACACTATGGTTTCTTGACCACAAT
66 TATTAAGGAAATATGCAACAACCTGTTTTCAATGGTGTTGAACACTATGGTTTCTTGACCACAAT
*
51111184 TCTGACCAATGAGTTAGAAAATTTAATTTATTTAATATTTATAAAGTTGTTGAAGTGTAGTATTA
131 TCCGACCAATGAGTTAGAAAATTTAATTTATTTAATATTTATAAAGTTGTTGAAGTGTAGTATTA
51111249 AAATTTGGTCTAGTAATTTTAAAGTTTGGATAGTTAATTAAGTAAAAAGGACTAAATCGTAAAAG
196 AAATTTGGTCTAGTAATTTTAAAGTTTGGATAGTTAATTAAGTAAAAAGGACTAAATCGTAAAAG
* *
51111314 CTACAAAATTTAATCACTATTAGTTTATAGGTGCTTAATGGTTTTATAAACATGAAGTGATGGTT
261 CTACAAAAGTTAATCACTATTAGTTTATAGGTGCTTAATGGTTTTATAAACATGAAATGATGGTT
51111379 TTAAAAGGTAATTAGACCTTATTACTTTATAATGGATGGTTAAGATGTAGTTATTTATGAAATTT
326 TTAAAAGGTAATTAGACCTTATTACTTTATAATGGATGGTTAAGATGTAGTTATTTATGAAATTT
51111444 TAGTTAATATTGTTATG
391 TAGTTAATATTGTTATG
51111461 ATTTCTTTTTTTAATAGAGAGAGACTTGACTTTAAGTTTGTTTTTTTTAGTGAAAGGCTGGATTA
1 ATTTCTTTTTTTAATAGAGAGAGACTTGACTTTAAGTTTGTTTTTTTTAGTGAAAGGCTGGATTA
51111526 TATTAAGGAAATATGCAACAACCTGTTTTCAATGGTGTTGAACACTATGGTTTCTTGACCACAAT
66 TATTAAGGAAATATGCAACAACCTGTTTTCAATGGTGTTGAACACTATGGTTTCTTGACCACAAT
*
51111591 TCTGACCAATGAGTTAGAAAATTTAATTTATTTAATATTTATAAAGTTGTTGAAGTGTAGTATTA
131 TCCGACCAATGAGTTAGAAAATTTAATTTATTTAATATTTATAAAGTTGTTGAAGTGTAGTATTA
*
51111656 AAATTTGGTCTAGTAATTTTAAAGTTTGGATAGTTAATTAAGTAAAAAGGACTAAATCATAAAAG
196 AAATTTGGTCTAGTAATTTTAAAGTTTGGATAGTTAATTAAGTAAAAAGGACTAAATCGTAAAAG
* *
51111721 CTACAAAATTTAATCACTATTATTTTATAGGTGCTTAATGGTTTTATAAACATGAAATGATGGTT
261 CTACAAAAGTTAATCACTATTAGTTTATAGGTGCTTAATGGTTTTATAAACATGAAATGATGGTT
51111786 TTAAAAGGTAATTAGACCTTATTACTTTATAATGGATGGTTAAGATGTAGTTATTTATGAAATTT
326 TTAAAAGGTAATTAGACCTTATTACTTTATAATGGATGGTTAAGATGTAGTTATTTATGAAATTT
51111851 TAGTTAATATTGTTATG
391 TAGTTAATATTGTTATG
* * * *
51111868 ATTTGTTTTTTTTTTTTCATAGAGACG-GACTTGACTTTAAGTTTTTTTTTTTTAGAGAAAGGCT
1 A-----TTTCTTTTTTTAATAGAGA-GAGACTTGACTTTAAGTTTGTTTTTTTTAGTGAAAGGCT
51111932 GGATTATATTAAGGAAATATGCAACAACCTGTTTTCAATGGTGTTGAACACTATGGTTTCTTGAC
60 GGATTATATTAAGGAAATATGCAACAACCTGTTTTCAATGGTGTTGAACACTATGGTTTCTTGAC
* * *
51111997 CACAATTCCGACCAATAAGTTAGAAAATTTTATTTATTTGATATTTATAAAGTTGTTGAAGTGTA
125 CACAATTCCGACCAATGAGTTAGAAAATTTAATTTATTTAATATTTATAAAGTTGTTGAAGTGTA
*
51112062 GTATTAAAATTTGGTCTGGTAATTTTAAAGTTTGGATAGTTAATTAAGTAAAAAGGACTAAATCG
190 GTATTAAAATTTGGTCTAGTAATTTTAAAGTTTGGATAGTTAATTAAGTAAAAAGGACTAAATCG
*
51112127 TAAAAGCTACAAAAGTTAATCACTATTAGTTTATAGGTGCTTAATGGTTTTGTAAACATGAAATG
255 TAAAAGCTACAAAAGTTAATCACTATTAGTTTATAGGTGCTTAATGGTTTTATAAACATGAAATG
* * * *
51112192 ATGGTTTTAAAAGTTAATTAGACATTATTACTTTATAGTGGACGGTTAAGATGTAGTTATTTATG
320 ATGGTTTTAAAAGGTAATTAGACCTTATTACTTTATAATGGATGGTTAAGATGTAGTTATTTATG
51112257 AAATTTTAGTTAATATT
385 AAATTTTAGTTAATATT
51112274 AAATGGAAAA
Statistics
Matches: 1178, Mismatches: 35, Indels: 11
0.96 0.03 0.01
Matches are distributed among these distances:
406 156 0.13
407 604 0.51
408 2 0.00
409 34 0.03
412 381 0.32
413 1 0.00
ACGTcount: A:0.34, C:0.08, G:0.17, T:0.41
Consensus pattern (407 bp):
ATTTCTTTTTTTAATAGAGAGAGACTTGACTTTAAGTTTGTTTTTTTTAGTGAAAGGCTGGATTA
TATTAAGGAAATATGCAACAACCTGTTTTCAATGGTGTTGAACACTATGGTTTCTTGACCACAAT
TCCGACCAATGAGTTAGAAAATTTAATTTATTTAATATTTATAAAGTTGTTGAAGTGTAGTATTA
AAATTTGGTCTAGTAATTTTAAAGTTTGGATAGTTAATTAAGTAAAAAGGACTAAATCGTAAAAG
CTACAAAAGTTAATCACTATTAGTTTATAGGTGCTTAATGGTTTTATAAACATGAAATGATGGTT
TTAAAAGGTAATTAGACCTTATTACTTTATAATGGATGGTTAAGATGTAGTTATTTATGAAATTT
TAGTTAATATTGTTATG
Found at i:51112259 original size:819 final size:816
Alignment explanation
Indices: 51110645--51112273 Score: 2861
Period size: 819 Copynumber: 2.0 Consensus size: 816
51110635 TTGTGTGATA
* * *
51110645 ATTTCTTTTTTTCATAGAGAGGGACTTGACTTTAAGCTTGTTTGTTTTTTTAGTGAAAGGCTAGA
1 ATTTCTTTTTTTAATAGAGAGAGACTTGACTTTAAGCTTGTGTGTTTTTTTAGTGAAAGGCTAGA
* *
51110710 TTATATTAAGGAAATATGCAATAACCTATTTTCAATGGTTTTGAACACTATGGTTACTTCACCAC
66 TTATATTAAGGAAATATGCAACAACCTATTTTCAATGGTGTTGAACACTATGGTTACTTCACCAC
* *
51110775 AATTCCGACCAATGAGTTAGAAAATTTTATTTATTTAATATTTATAAAGTTGTTGGAGTGTAGTA
131 AATTCCGACCAATGAGTTAGAAAATTTAATTTATTTAATATTTATAAAGTTGTTGAAGTGTAGTA
*
51110840 TTAAAATTTGGTCTGTAACTTTAAAGTTTGAATAGTTAATTAAGTAAAAAGGACTAAATCGTAAA
196 TTAAAATTTGGTCTGTAACTTTAAAGTTTGAATAGTTAATTAAGTAAAAAGGACTAAATCATAAA
*
51110905 AGCTACAAAAGTTAATCACTATTAGTTTATAGGTGCTTAATGGTTTTATAAACATGAAGTGATGG
261 AGCTACAAAAGTTAATCACTATTAGTTTATAGGTGCTTAATGGTTTTATAAACATGAAATGATGG
51110970 TTTTAAAAGGTAATTAGACCTTATTACTTTATAATGGATGGTTAAGATGTAGTTATTTATGAAAT
326 TTTTAAAAGGTAATTAGACCTTATTACTTTATAATGGATGGTTAAGATGTAGTTATTTATGAAAT
51111035 TTTAGTTAATATTGTTATGATTTCTTTTTTTAATAGAGAGAGACTTGACTTTAAGTTTGTTTTTT
391 TTTAGTTAATATTGTTATGATTTCTTTTTTTAATAGAGAGAGACTTGACTTTAAGTTTGTTTTTT
*
51111100 TTAGTGAAAGGCTGGATTATATTAAGGAAATATGCAACAACCTGTTTTCAATGGTGTTGAACACT
456 TTAGAGAAAGGCTGGATTATATTAAGGAAATATGCAACAACCTGTTTTCAATGGTGTTGAACACT
* *
51111165 ATGGTTTCTTGACCACAATTCTGACCAATGAGTTAGAAAATTTAATTTATTTAATATTTATAAAG
521 ATGGTTTCTTGACCACAATTCCGACCAATAAGTTAGAAAATTTAATTTATTTAATATTTATAAAG
51111230 TTGTTGAAGTGTAGTATTAAAATTTGGTCTAGTAATTTTAAAGTTTGGATAGTTAATTAAGTAAA
586 TTGTTGAAGTGTAGTATTAAAATTTGGTCTAGTAATTTTAAAGTTTGGATAGTTAATTAAGTAAA
*
51111295 AAGGACTAAATCGTAAAAGCTACAAAATTTAATCACTATTAGTTTATAGGTGCTTAATGGTTTTA
651 AAGGACTAAATCGTAAAAGCTACAAAAGTTAATCACTATTAGTTTATAGGTGCTTAATGGTTTTA
* * *
51111360 TAAACATGAAGTGATGGTTTTAAAAGGTAATTAGACCTTATTACTTTATAATGGATGGTTAAGAT
716 TAAACATGAAATGATGGTTTTAAAAGGTAATTAGACATTATTACTTTATAATGGACGGTTAAGAT
51111425 GTAGTTATTTATGAAATTTTAGTTAATATTGTTATG
781 GTAGTTATTTATGAAATTTTAGTTAATATTGTTATG
*
51111461 ATTTCTTTTTTTAATAGAGAGAGACTTGACTTTAAG-TT-TGT-TTTTTTTAGTGAAAGGCTGGA
1 ATTTCTTTTTTTAATAGAGAGAGACTTGACTTTAAGCTTGTGTGTTTTTTTAGTGAAAGGCTAGA
* * *
51111523 TTATATTAAGGAAATATGCAACAACCTGTTTTCAATGGTGTTGAACACTATGGTTTCTTGACCAC
66 TTATATTAAGGAAATATGCAACAACCTATTTTCAATGGTGTTGAACACTATGGTTACTTCACCAC
*
51111588 AATTCTGACCAATGAGTTAGAAAATTTAATTTATTTAATATTTATAAAGTTGTTGAAGTGTAGTA
131 AATTCCGACCAATGAGTTAGAAAATTTAATTTATTTAATATTTATAAAGTTGTTGAAGTGTAGTA
* *
51111653 TTAAAATTTGGTCTAGTAATTTTAAAGTTTGGATAGTTAATTAAGTAAAAAGGACTAAATCATAA
196 TTAAAATTTGGTCT-GTAACTTTAAAGTTTGAATAGTTAATTAAGTAAAAAGGACTAAATCATAA
* *
51111718 AAGCTACAAAATTTAATCACTATTATTTTATAGGTGCTTAATGGTTTTATAAACATGAAATGATG
260 AAGCTACAAAAGTTAATCACTATTAGTTTATAGGTGCTTAATGGTTTTATAAACATGAAATGATG
51111783 GTTTTAAAAGGTAATTAGACCTTATTACTTTATAATGGATGGTTAAGATGTAGTTATTTATGAAA
325 GTTTTAAAAGGTAATTAGACCTTATTACTTTATAATGGATGGTTAAGATGTAGTTATTTATGAAA
* *
51111848 TTTTAGTTAATATTGTTATGATTTGTTTTTTTTTTTTCATAGAGACG-GACTTGACTTTAAGTTT
390 TTTTAGTTAATATTGTTATGA-----TTTCTTTTTTTAATAGAGA-GAGACTTGACTTTAAGTTT
*
51111912 TTTTTTTTTAGAGAAAGGCTGGATTATATTAAGGAAATATGCAACAACCTGTTTTCAATGGTGTT
449 GTTTTTTTTAGAGAAAGGCTGGATTATATTAAGGAAATATGCAACAACCTGTTTTCAATGGTGTT
* *
51111977 GAACACTATGGTTTCTTGACCACAATTCCGACCAATAAGTTAGAAAATTTTATTTATTTGATATT
514 GAACACTATGGTTTCTTGACCACAATTCCGACCAATAAGTTAGAAAATTTAATTTATTTAATATT
*
51112042 TATAAAGTTGTTGAAGTGTAGTATTAAAATTTGGTCTGGTAATTTTAAAGTTTGGATAGTTAATT
579 TATAAAGTTGTTGAAGTGTAGTATTAAAATTTGGTCTAGTAATTTTAAAGTTTGGATAGTTAATT
51112107 AAGTAAAAAGGACTAAATCGTAAAAGCTACAAAAGTTAATCACTATTAGTTTATAGGTGCTTAAT
644 AAGTAAAAAGGACTAAATCGTAAAAGCTACAAAAGTTAATCACTATTAGTTTATAGGTGCTTAAT
* * *
51112172 GGTTTTGTAAACATGAAATGATGGTTTTAAAAGTTAATTAGACATTATTACTTTATAGTGGACGG
709 GGTTTTATAAACATGAAATGATGGTTTTAAAAGGTAATTAGACATTATTACTTTATAATGGACGG
51112237 TTAAGATGTAGTTATTTATGAAATTTTAGTTAATATT
774 TTAAGATGTAGTTATTTATGAAATTTTAGTTAATATT
51112274 AAATGGAAAA
Statistics
Matches: 772, Mismatches: 34, Indels: 11
0.94 0.04 0.01
Matches are distributed among these distances:
813 156 0.20
814 197 0.26
815 2 0.00
816 34 0.04
819 382 0.49
820 1 0.00
ACGTcount: A:0.34, C:0.08, G:0.17, T:0.41
Consensus pattern (816 bp):
ATTTCTTTTTTTAATAGAGAGAGACTTGACTTTAAGCTTGTGTGTTTTTTTAGTGAAAGGCTAGA
TTATATTAAGGAAATATGCAACAACCTATTTTCAATGGTGTTGAACACTATGGTTACTTCACCAC
AATTCCGACCAATGAGTTAGAAAATTTAATTTATTTAATATTTATAAAGTTGTTGAAGTGTAGTA
TTAAAATTTGGTCTGTAACTTTAAAGTTTGAATAGTTAATTAAGTAAAAAGGACTAAATCATAAA
AGCTACAAAAGTTAATCACTATTAGTTTATAGGTGCTTAATGGTTTTATAAACATGAAATGATGG
TTTTAAAAGGTAATTAGACCTTATTACTTTATAATGGATGGTTAAGATGTAGTTATTTATGAAAT
TTTAGTTAATATTGTTATGATTTCTTTTTTTAATAGAGAGAGACTTGACTTTAAGTTTGTTTTTT
TTAGAGAAAGGCTGGATTATATTAAGGAAATATGCAACAACCTGTTTTCAATGGTGTTGAACACT
ATGGTTTCTTGACCACAATTCCGACCAATAAGTTAGAAAATTTAATTTATTTAATATTTATAAAG
TTGTTGAAGTGTAGTATTAAAATTTGGTCTAGTAATTTTAAAGTTTGGATAGTTAATTAAGTAAA
AAGGACTAAATCGTAAAAGCTACAAAAGTTAATCACTATTAGTTTATAGGTGCTTAATGGTTTTA
TAAACATGAAATGATGGTTTTAAAAGGTAATTAGACATTATTACTTTATAATGGACGGTTAAGAT
GTAGTTATTTATGAAATTTTAGTTAATATTGTTATG
Found at i:51113343 original size:28 final size:28
Alignment explanation
Indices: 51113311--51113400 Score: 76
Period size: 28 Copynumber: 3.2 Consensus size: 28
51113301 GCACTTTGTG
51113311 CCGGTGATATATTTCTAGGTACTATGTA
1 CCGGTGATATATTTCTAGGTACTATGTA
* * * ** * * *
51113339 TCGGT-ATTATAGTTCCAGACACTCTATG
1 CCGGTGA-TATATTTCTAGGTACTATGTA
51113367 CCGGTGATATATTT-TCAGGTACTATGTA
1 CCGGTGATATATTTCT-AGGTACTATGTA
51113395 CCGGTG
1 CCGGTG
51113401 GTGGATACCA
Statistics
Matches: 43, Mismatches: 16, Indels: 6
0.66 0.25 0.09
Matches are distributed among these distances:
27 1 0.02
28 41 0.95
29 1 0.02
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (28 bp):
CCGGTGATATATTTCTAGGTACTATGTA
Found at i:51115141 original size:81 final size:81
Alignment explanation
Indices: 51115047--51115215 Score: 266
Period size: 81 Copynumber: 2.1 Consensus size: 81
51115037 TTAATGAATT
* * * *
51115047 GATATTTGCTTATGATATGGACTAAATCATAAAGAAACGATAAATTCATTTATAAATTGAATATG
1 GATATTTGATTATGACATGGAATAAATCATAAAGAAACGATAAAATCATTTATAAATTGAATATG
*
51115112 ATAACTTATAATTTGA
66 ATAAATTATAATTTGA
* *
51115128 GATATTTGATTATGGCATGGAATAAATCATAAAGAAACGATAAAATGATTTATAAATTGAATATG
1 GATATTTGATTATGACATGGAATAAATCATAAAGAAACGATAAAATCATTTATAAATTGAATATG
51115193 ATAAATTATAATTTGA
66 ATAAATTATAATTTGA
*
51115209 TATATTT
1 GATATTT
51115216 AATGAATTGG
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.44, C:0.05, G:0.13, T:0.37
Consensus pattern (81 bp):
GATATTTGATTATGACATGGAATAAATCATAAAGAAACGATAAAATCATTTATAAATTGAATATG
ATAAATTATAATTTGA
Found at i:51116205 original size:91 final size:91
Alignment explanation
Indices: 51115914--51116215 Score: 311
Period size: 91 Copynumber: 3.3 Consensus size: 91
51115904 CAATGTGTTG
* * * * *
51115914 CTTAAATGTGATTTAAGTGATGTTCGAAAGTGGTTAAATTACAATTTTAATTGCTGAAAATTATG
1 CTTAAAGGTGATTTAAATGATGTTCGAAAGTTGTTAAATGAAAATTTTAATTGCTGAAAATTATG
*
51115979 GTGTTTGATTGTATGCTTTAATGATA
66 GTGTTTGATTGTATGCTTTGATGATA
* * * * * *** * * *
51116005 CTCAAAGATGATTTAAATGATG-TCTAAAAGATGTTAACTGGTCATTTTAATTGCCGTAAGTTAT
1 CTTAAAGGTGATTTAAATGATGTTC-GAAAGTTGTTAAATGAAAATTTTAATTGCTGAAAATTAT
* *
51116069 GGTGTTTGAATGTATG-TGTTGATGATG
65 GGTGTTTGATTGTATGCT-TTGATGATA
* * *
51116096 CTTAGATGTGATTTAAATGATGTTCGAAAGTTGTTAAATGAAAATTTTAATTGCTGAAAATTATA
1 CTTAAAGGTGATTTAAATGATGTTCGAAAGTTGTTAAATGAAAATTTTAATTGCTGAAAATTATG
* *
51116161 GTGTCTGATTGTAGGCTTTGATGATA
66 GTGTTTGATTGTATGCTTTGATGATA
* * * * *
51116187 TTTAAAGGCGCTTAAAATGATGTTTGAAA
1 CTTAAAGGTGATTTAAATGATGTTCGAAA
51116216 ATGGTAAACT
Statistics
Matches: 164, Mismatches: 43, Indels: 8
0.76 0.20 0.04
Matches are distributed among these distances:
90 3 0.02
91 158 0.96
92 3 0.02
ACGTcount: A:0.32, C:0.06, G:0.21, T:0.40
Consensus pattern (91 bp):
CTTAAAGGTGATTTAAATGATGTTCGAAAGTTGTTAAATGAAAATTTTAATTGCTGAAAATTATG
GTGTTTGATTGTATGCTTTGATGATA
Found at i:51116238 original size:182 final size:182
Alignment explanation
Indices: 51115912--51116240 Score: 455
Period size: 182 Copynumber: 1.8 Consensus size: 182
51115902 CGCAATGTGT
* * *
51115912 TGCTTAAATGTGATTTAAGTGATGTTCGAAAGTGGTTAAATTACAATTTTAATTGCTGAAAATTA
1 TGCTTAAATGTGATTTAAATGATGTTCGAAAGTGGTTAAATGAAAATTTTAATTGCTGAAAATTA
* * * * * *
51115977 TGGTGTTTGATTGTATGCTTTAATGATACTCAAAGATGATTTAAATGATGTCTAAAAGATGTTAA
66 TAGTGTCTGATTGTAGGCTTTAATGATACTCAAAGACGATTAAAATGATGTCTAAAAGATGTAAA
*
51116042 CTGGTCATTTTAATTGCCGTAAGTTATGGTGTTTGAATGTATGTGTTGATGA
131 CTGGTCACTTTAATTGCCGTAAGTTATGGTGTTTGAATGTATGTGTTGATGA
* *
51116094 TGCTTAGATGTGATTTAAATGATGTTCGAAAGTTGTTAAATGAAAATTTTAATTGCTGAAAATTA
1 TGCTTAAATGTGATTTAAATGATGTTCGAAAGTGGTTAAATGAAAATTTTAATTGCTGAAAATTA
* * * * * * *
51116159 TAGTGTCTGATTGTAGGCTTTGATGATATTTAAAGGCGCTTAAAATGATGTTTGAAA-ATGGTAA
66 TAGTGTCTGATTGTAGGCTTTAATGATACTCAAAGACGATTAAAATGATGTCTAAAAGAT-GTAA
51116223 ACTGG-CAGCTTTAATTGC
130 ACTGGTCA-CTTTAATTGC
51116241 TATGAATTTA
Statistics
Matches: 126, Mismatches: 19, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
181 4 0.03
182 122 0.97
ACGTcount: A:0.32, C:0.07, G:0.22, T:0.40
Consensus pattern (182 bp):
TGCTTAAATGTGATTTAAATGATGTTCGAAAGTGGTTAAATGAAAATTTTAATTGCTGAAAATTA
TAGTGTCTGATTGTAGGCTTTAATGATACTCAAAGACGATTAAAATGATGTCTAAAAGATGTAAA
CTGGTCACTTTAATTGCCGTAAGTTATGGTGTTTGAATGTATGTGTTGATGA
Found at i:51117236 original size:17 final size:18
Alignment explanation
Indices: 51117211--51117244 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
51117201 ATCGTACAAC
*
51117211 AAAATAAAAATA-AAAAT
1 AAAACAAAAATAGAAAAT
51117228 AAAACAAAAATAGAAAA
1 AAAACAAAAATAGAAAA
51117245 ATGAAACAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.12
Consensus pattern (18 bp):
AAAACAAAAATAGAAAAT
Found at i:51118620 original size:351 final size:351
Alignment explanation
Indices: 51117977--51118682 Score: 1412
Period size: 351 Copynumber: 2.0 Consensus size: 351
51117967 GCGCTTCTCA
51117977 AAAGCTAAAGCCAACTGTTGTGACTCTTTGATATACGGACTAATCTCTGATTGGTCAATACTGGC
1 AAAGCTAAAGCCAACTGTTGTGACTCTTTGATATACGGACTAATCTCTGATTGGTCAATACTGGC
51118042 AGACTAGACTTTCGAGATGACCACGCAAGAGTCCCCTTCAACTTCCACTAATCTGAAGCCCATGT
66 AGACTAGACTTTCGAGATGACCACGCAAGAGTCCCCTTCAACTTCCACTAATCTGAAGCCCATGT
51118107 CTTTTGCAAAATGGATTGCCTGTAGGCTAGCCCAGGCCTCCGCACACAACAGAGATGAAGAATAT
131 CTTTTGCAAAATGGATTGCCTGTAGGCTAGCCCAGGCCTCCGCACACAACAGAGATGAAGAATAT
51118172 ACGTTCCAAAAGCAAGCCAAGTGACTGAAGAAACTGCCATAAAAGTTAACCCTGATAAAAAGGGT
196 ACGTTCCAAAAGCAAGCCAAGTGACTGAAGAAACTGCCATAAAAGTTAACCCTGATAAAAAGGGT
51118237 CCGTAGGTACCCTCAATTTCCCTGCTACTGGAGAGGGTCAAACACTCTGAGTTGTGGACAATCGT
261 CCGTAGGTACCCTCAATTTCCCTGCTACTGGAGAGGGTCAAACACTCTGAGTTGTGGACAATCGT
51118302 TCCAATTATCAAACATGGCCCAAGAC
326 TCCAATTATCAAACATGGCCCAAGAC
51118328 AAAGCTAAAGCCAACTGTTGTGACTCTTTGATATACGGACTAATCTCTGATTGGTCAATACTGGC
1 AAAGCTAAAGCCAACTGTTGTGACTCTTTGATATACGGACTAATCTCTGATTGGTCAATACTGGC
51118393 AGACTAGACTTTCGAGATGACCACGCAAGAGTCCCCTTCAACTTCCACTAATCTGAAGCCCATGT
66 AGACTAGACTTTCGAGATGACCACGCAAGAGTCCCCTTCAACTTCCACTAATCTGAAGCCCATGT
51118458 CTTTTGCAAAATGGATTGCCTGTAGGCTAGCCCAGGCCTCCGCACACAACAGAGATGAAGAATAT
131 CTTTTGCAAAATGGATTGCCTGTAGGCTAGCCCAGGCCTCCGCACACAACAGAGATGAAGAATAT
51118523 ACGTTCCAAAAGCAAGCCAAGTGACTGAAGAAACTGCCATAAAAGTTAACCCTGATAAAAAGGGT
196 ACGTTCCAAAAGCAAGCCAAGTGACTGAAGAAACTGCCATAAAAGTTAACCCTGATAAAAAGGGT
51118588 CCGTAGGTACCCTCAATTTCCCTGCTACTGGAGAGGGTCAAACACTCTGAGTTGTGGACAATCGT
261 CCGTAGGTACCCTCAATTTCCCTGCTACTGGAGAGGGTCAAACACTCTGAGTTGTGGACAATCGT
51118653 TCCAATTATCAAACATGGCCCAAGAC
326 TCCAATTATCAAACATGGCCCAAGAC
51118679 AAAG
1 AAAG
51118683 GTAACAAAAT
Statistics
Matches: 355, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
351 355 1.00
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (351 bp):
AAAGCTAAAGCCAACTGTTGTGACTCTTTGATATACGGACTAATCTCTGATTGGTCAATACTGGC
AGACTAGACTTTCGAGATGACCACGCAAGAGTCCCCTTCAACTTCCACTAATCTGAAGCCCATGT
CTTTTGCAAAATGGATTGCCTGTAGGCTAGCCCAGGCCTCCGCACACAACAGAGATGAAGAATAT
ACGTTCCAAAAGCAAGCCAAGTGACTGAAGAAACTGCCATAAAAGTTAACCCTGATAAAAAGGGT
CCGTAGGTACCCTCAATTTCCCTGCTACTGGAGAGGGTCAAACACTCTGAGTTGTGGACAATCGT
TCCAATTATCAAACATGGCCCAAGAC
Found at i:51122264 original size:4 final size:4
Alignment explanation
Indices: 51122255--51122317 Score: 54
Period size: 4 Copynumber: 14.8 Consensus size: 4
51122245 AAAGGAATAA
* * *
51122255 AAAT AAAT AAAT AACAT AAAT AAAT AAAT AATGAG AAAT AAAG AAACG
1 AAAT AAAT AAAT AA-AT AAAT AAAT AAAT AA--AT AAAT AAAT AAA-T
*
51122303 AACT AAAT AAAT AAA
1 AAAT AAAT AAAT AAA
51122318 CCAATAAGAA
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
4 39 0.80
5 7 0.14
6 3 0.06
ACGTcount: A:0.70, C:0.05, G:0.06, T:0.19
Consensus pattern (4 bp):
AAAT
Found at i:51122275 original size:13 final size:12
Alignment explanation
Indices: 51122255--51122317 Score: 54
Period size: 13 Copynumber: 4.9 Consensus size: 12
51122245 AAAGGAATAA
51122255 AAATAAATAAAT
1 AAATAAATAAAT
51122267 AACATAAATAAAT
1 AA-ATAAATAAAT
*
51122280 AAATAATGAGAAAT
1 AAATAA--ATAAAT
* * *
51122294 AAAGAAACGAACT
1 AAATAAA-TAAAT
51122307 AAATAAATAAA
1 AAATAAATAAA
51122318 CCAATAAGAA
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
12 9 0.22
13 22 0.54
14 10 0.24
ACGTcount: A:0.70, C:0.05, G:0.06, T:0.19
Consensus pattern (12 bp):
AAATAAATAAAT
Found at i:51122277 original size:17 final size:17
Alignment explanation
Indices: 51122255--51122317 Score: 65
Period size: 17 Copynumber: 3.6 Consensus size: 17
51122245 AAAGGAATAA
51122255 AAATAAATAAATAACAT
1 AAATAAATAAATAACAT
* *
51122272 AAATAAATAAATAATGAG
1 AAATAAATAAATAA-CAT
* *
51122290 AAATAAAGAAACGAAC-T
1 AAATAAATAAA-TAACAT
51122307 AAATAAATAAA
1 AAATAAATAAA
51122318 CCAATAAGAA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
17 24 0.65
18 11 0.30
19 2 0.05
ACGTcount: A:0.70, C:0.05, G:0.06, T:0.19
Consensus pattern (17 bp):
AAATAAATAAATAACAT
Found at i:51136554 original size:20 final size:21
Alignment explanation
Indices: 51136529--51136571 Score: 79
Period size: 20 Copynumber: 2.1 Consensus size: 21
51136519 AGGCGAAAGG
51136529 TTTCCATTATTAACAT-TTTT
1 TTTCCATTATTAACATGTTTT
51136549 TTTCCATTATTAACATGTTTT
1 TTTCCATTATTAACATGTTTT
51136570 TT
1 TT
51136572 AGACTCTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 16 0.73
21 6 0.27
ACGTcount: A:0.23, C:0.14, G:0.02, T:0.60
Consensus pattern (21 bp):
TTTCCATTATTAACATGTTTT
Found at i:51137455 original size:31 final size:32
Alignment explanation
Indices: 51137408--51137467 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 32
51137398 TTAATTATTT
*
51137408 TAATTCTTTTTAATTTTTAAAAATAAATTTTA
1 TAATTCTTTTTAATTTTCAAAAATAAATTTTA
* *
51137440 TAATT-TTTTTTATTTTCAAAAATTAATT
1 TAATTCTTTTTAATTTTCAAAAATAAATT
51137468 AAATACTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 20 0.80
32 5 0.20
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.58
Consensus pattern (32 bp):
TAATTCTTTTTAATTTTCAAAAATAAATTTTA
Found at i:51138233 original size:21 final size:18
Alignment explanation
Indices: 51138187--51138235 Score: 55
Period size: 21 Copynumber: 2.6 Consensus size: 18
51138177 TAATATTTTA
51138187 TAAATAATA-ATAAAAAT
1 TAAATAATATATAAAAAT
51138204 TAAATTAATATATAAAATTAT
1 TAAA-TAATATATAAAA--AT
51138225 TCAAATAATAT
1 T-AAATAATAT
51138236 TCAAATTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
17 4 0.15
18 5 0.19
19 6 0.22
21 9 0.33
22 3 0.11
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (18 bp):
TAAATAATATATAAAAAT
Found at i:51138962 original size:21 final size:20
Alignment explanation
Indices: 51138933--51138978 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
51138923 ATTTTTTAAG
*
51138933 TAATAATTTTAAAATAAATTA
1 TAATTATTTTAAAATAAA-TA
* *
51138954 TAATTATTTTTAAATATATA
1 TAATTATTTTAAAATAAATA
51138974 TAATT
1 TAATT
51138979 CTAACTTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TAATTATTTTAAAATAAATA
Found at i:51141243 original size:3 final size:3
Alignment explanation
Indices: 51141235--51141321 Score: 70
Period size: 3 Copynumber: 28.3 Consensus size: 3
51141225 TAGCAATTTT
* *
51141235 TTA TTA TTA TTTA GTTA TTA TTA TTA TTA TCA TTA TTA -TA TTTA CTA
1 TTA TTA TTA -TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
* * * *
51141282 TTA TTA TTA TTA -TA TTTA TTA ATA CTA TTG TTA GTA TTA T
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA T
51141322 GTTTTCTTAT
Statistics
Matches: 67, Mismatches: 12, Indels: 10
0.75 0.13 0.11
Matches are distributed among these distances:
2 4 0.06
3 53 0.79
4 10 0.15
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:51147870 original size:25 final size:26
Alignment explanation
Indices: 51147836--51147887 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
51147826 ATAAAAATAT
*
51147836 TTATTATATTTAT-TTGTGTTTTTTA
1 TTATTATATTTATGTAGTGTTTTTTA
51147861 TTATTATATTTATGGTAGTGTTTTTTA
1 TTATTATATTTAT-GTAGTGTTTTTTA
51147888 AATATAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 13 0.54
27 11 0.46
ACGTcount: A:0.21, C:0.00, G:0.12, T:0.67
Consensus pattern (26 bp):
TTATTATATTTATGTAGTGTTTTTTA
Found at i:51174394 original size:131 final size:131
Alignment explanation
Indices: 51174089--51174504 Score: 608
Period size: 131 Copynumber: 3.2 Consensus size: 131
51174079 TGGATTGAAG
*
51174089 AAGACAGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGAATTAAACCACCAGTCCTATCTCC
1 AAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAG-ATTAAACCACCAGTCCTATCTCC
* *
51174154 CTGAGCAGTAGTGGAGTAGGTTGAAGAGTGTAGATCCCGTCTCCCTAAGCAATAGTGGAGCAAAT
65 CTGAGCAGCAGTGGAGTAGGTTGAAGAATGTAGATCCCGTCTCCCTAAGCAATAGTGGAGCAAAT
51174219 CA
130 CA
*
51174221 AATG-CGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTCAAACCACCAGTTCTATCTC
1 AA-GACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATT-AAACCACCAGTCCTATCTC
* *
51174285 CTTGAGCAGCAGTGGAGTAGGTTGAAGAATGTAGA-CCCGTCTTCCTAAGCAATAGTGGAG-AAG
64 CCTGAGCAGCAGTGGAGTAGGTTGAAGAATGTAGATCCCGTCTCCCTAAGCAATAGTGGAGCAA-
51174348 ATCA
128 ATCA
*
51174352 AAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAACCACCAGTCCTATCTCCC
1 AAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTAAACCACCAGTCCTATCTCCC
* *** * * *
51174417 TGAGCAGCAATGGAGTAGGTTGAAGAATGTAGATCGTTTCTCCCTGAGCAGTAGTGGAGCAGATC
66 TGAGCAGCAGTGGAGTAGGTTGAAGAATGTAGATCCCGTCTCCCTAAGCAATAGTGGAGCAAATC
51174482 GA
131 -A
* *
51174484 AA-ACAGTGAATTTTA-CTTCCC
1 AAGACGGTGAATCTTATCTTCCC
51174505 TGGTGTTGCG
Statistics
Matches: 258, Mismatches: 19, Indels: 16
0.88 0.06 0.05
Matches are distributed among these distances:
130 59 0.23
131 106 0.41
132 92 0.36
133 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.24
Consensus pattern (131 bp):
AAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTAAACCACCAGTCCTATCTCCC
TGAGCAGCAGTGGAGTAGGTTGAAGAATGTAGATCCCGTCTCCCTAAGCAATAGTGGAGCAAATC
A
Found at i:51174545 original size:21 final size:21
Alignment explanation
Indices: 51174515--51174556 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
51174505 TGGTGTTGCG
51174515 GTGGAATGGATTAAAGCTGAA
1 GTGGAATGGATTAAAGCTGAA
*
51174536 GTGGAGTGGATTAAAGCTGAA
1 GTGGAATGGATTAAAGCTGAA
51174557 TACAGCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.05, G:0.36, T:0.24
Consensus pattern (21 bp):
GTGGAATGGATTAAAGCTGAA
Found at i:51176294 original size:12 final size:12
Alignment explanation
Indices: 51176279--51176307 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
51176269 TTACTGTTTT
51176279 ATTTAATATTTC
1 ATTTAATATTTC
51176291 ATTTAATATTTC
1 ATTTAATATTTC
51176303 ATTTA
1 ATTTA
51176308 TTTATTTACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (12 bp):
ATTTAATATTTC
Found at i:51176323 original size:21 final size:22
Alignment explanation
Indices: 51176285--51176328 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
51176275 TTTTATTTAA
51176285 TATTTCATTTAATATTTC-ATT
1 TATTTCATTTAATATTTCGATT
*
51176306 TATTT-ATTTACTACTTTCGATT
1 TATTTCATTTAATA-TTTCGATT
51176328 T
1 T
51176329 TAAATCTATC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 7 0.35
21 9 0.45
22 4 0.20
ACGTcount: A:0.25, C:0.11, G:0.02, T:0.61
Consensus pattern (22 bp):
TATTTCATTTAATATTTCGATT
Found at i:51177536 original size:14 final size:14
Alignment explanation
Indices: 51177514--51177556 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
51177504 TCTTCATAAA
*
51177514 TTTAGAATTTAGTT
1 TTTATAATTTAGTT
51177528 TTTATAATTATA-TT
1 TTTATAATT-TAGTT
51177542 TTTATGAATTTAGTT
1 TTTAT-AATTTAGTT
51177557 CCTTCATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 17 0.68
15 8 0.32
ACGTcount: A:0.30, C:0.00, G:0.09, T:0.60
Consensus pattern (14 bp):
TTTATAATTTAGTT
Found at i:51180787 original size:15 final size:16
Alignment explanation
Indices: 51180753--51180787 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
51180743 AGAGGAAATT
51180753 GGAAAGAAAGGAAAAA
1 GGAAAGAAAGGAAAAA
51180769 -GAAAGAAA-GAAAAA
1 GGAAAGAAAGGAAAAA
51180783 GGAAA
1 GGAAA
51180788 AAATAAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (16 bp):
GGAAAGAAAGGAAAAA
Found at i:51189332 original size:17 final size:17
Alignment explanation
Indices: 51189310--51189359 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 17
51189300 TCTTCAACAG
51189310 ACAGATGCAAAATCCAA
1 ACAGATGCAAAATCCAA
*
51189327 ACAGAT--TAAA--CAA
1 ACAGATGCAAAATCCAA
51189340 ACAGATGCAAAATCCAA
1 ACAGATGCAAAATCCAA
51189357 ACA
1 ACA
51189360 AATTCTTCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
13 9 0.33
15 6 0.22
17 12 0.44
ACGTcount: A:0.56, C:0.22, G:0.10, T:0.12
Consensus pattern (17 bp):
ACAGATGCAAAATCCAA
Found at i:51191427 original size:23 final size:23
Alignment explanation
Indices: 51191401--51191445 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
51191391 TACAATCAAC
51191401 ATTAGGCAT-ATAAACAAGCCATA
1 ATTAGGCATCA-AAACAAGCCATA
51191424 ATTAGGCATCCAAAACAAGCCA
1 ATTAGGCAT-CAAAACAAGCCA
51191446 AAATCAAGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 9 0.45
24 10 0.50
25 1 0.05
ACGTcount: A:0.47, C:0.22, G:0.13, T:0.18
Consensus pattern (23 bp):
ATTAGGCATCAAAACAAGCCATA
Found at i:51192565 original size:25 final size:24
Alignment explanation
Indices: 51192537--51192589 Score: 79
Period size: 25 Copynumber: 2.2 Consensus size: 24
51192527 TTGAATAACA
*
51192537 GTAAGCTCATACGAGCTGAGTATTG
1 GTAAGCTCATACGAGCTGA-AATTG
*
51192562 GTAAGCTCATACGTGCTGAAATTG
1 GTAAGCTCATACGAGCTGAAATTG
51192586 GTAA
1 GTAA
51192590 CCCTAATGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 8 0.31
25 18 0.69
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.28
Consensus pattern (24 bp):
GTAAGCTCATACGAGCTGAAATTG
Found at i:51193043 original size:13 final size:13
Alignment explanation
Indices: 51193025--51193050 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51193015 GTCCATATAT
51193025 TTCACAAATTTAC
1 TTCACAAATTTAC
51193038 TTCACAAATTTAC
1 TTCACAAATTTAC
51193051 AAATTTCACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.38
Consensus pattern (13 bp):
TTCACAAATTTAC
Found at i:51200380 original size:43 final size:41
Alignment explanation
Indices: 51200279--51200406 Score: 112
Period size: 43 Copynumber: 3.0 Consensus size: 41
51200269 TTACTGAGAG
* * *
51200279 GTGATAACATGTAAGACCATGTTTGGAACATTGGCATCGTTAT
1 GTGATAACATGTAAGACCATGTCTGGGACA-TGGCATTG-TAT
* ** * * *
51200322 ATGATTTCGTATAAGACCCTGTCTGGGACAGTGGCATTGATAT
1 GTGATAACATGTAAGACCATGTCTGGGACA-TGGCATTG-TAT
* * *
51200365 GTGATAACATGTAAGACCGTATCTGGGATATGGCATTGTAT
1 GTGATAACATGTAAGACCATGTCTGGGACATGGCATTGTAT
51200406 G
1 G
51200407 AGCTATTATG
Statistics
Matches: 66, Mismatches: 19, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
41 4 0.06
42 8 0.12
43 54 0.82
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (41 bp):
GTGATAACATGTAAGACCATGTCTGGGACATGGCATTGTAT
Found at i:51207650 original size:14 final size:14
Alignment explanation
Indices: 51207631--51207670 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
51207621 TTAAAAACCA
*
51207631 TTTATAATTAAATG
1 TTTATAATTAAAAG
*
51207645 TTTATATTTAAAAG
1 TTTATAATTAAAAG
*
51207659 TTTTTAATTAAA
1 TTTATAATTAAA
51207671 CTCACAACAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (14 bp):
TTTATAATTAAAAG
Found at i:51217895 original size:41 final size:41
Alignment explanation
Indices: 51217814--51218129 Score: 497
Period size: 41 Copynumber: 7.7 Consensus size: 41
51217804 TTAATTTAAA
* * *
51217814 CAGATTCACTGGCACTTAGCCCTGTTAGGCTTAAAGCCTGATT
1 CAGA-TCACCGGCACTTAG-CCTGCTAGGCTTATAGCCTGATT
* *
51217857 CAGATCACCGACACTTAGCCTGCTAGGCTTATAACCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
* *
51217898 TAGATCACCGGCACTTAGCTTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
*
51217939 CAGTTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
*
51217980 CAGTTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
** *
51218021 CAGATCACTAGCACTTAGCCTGCTAGGCTTATAGCCTTATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
51218062 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
*
51218103 CAGTTCACCGGCACTTAGCCTGCTAGG
1 CAGATCACCGGCACTTAGCCTGCTAGG
51218130 TTTTAAAACC
Statistics
Matches: 253, Mismatches: 20, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
41 237 0.94
42 12 0.05
43 4 0.02
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (41 bp):
CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
Found at i:51255489 original size:40 final size:42
Alignment explanation
Indices: 51255445--51255535 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 42
51255435 GCGCCATTAA
*
51255445 GGACGCGATGTGCTGCCACGT-CAGC-AAC-TCGCACTGACGT
1 GGACGCGATGTCCTGCCACGTGCA-CTAACATCGCACTGACGT
* * *
51255485 GGACGCGATGTCCTGGCGCGTGCACTGACATCGCACTGACGT
1 GGACGCGATGTCCTGCCACGTGCACTAACATCGCACTGACGT
*
51255527 GGCCGCGAT
1 GGACGCGAT
51255536 TTTGCGGTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
40 19 0.44
41 4 0.09
42 20 0.47
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.18
Consensus pattern (42 bp):
GGACGCGATGTCCTGCCACGTGCACTAACATCGCACTGACGT
Found at i:51255850 original size:124 final size:124
Alignment explanation
Indices: 51255630--51255855 Score: 366
Period size: 124 Copynumber: 1.8 Consensus size: 124
51255620 TAATTTTGAG
* *
51255630 TTGACGTTTCTGATAAAATAATATAAAATCGCTTCTAGCAGGATGGTATTTGAGAAGAATTTGTG
1 TTGACGTTTCTGAGAAAATAATATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
51255695 AAATCGCGGCCTCGTCAGCGCGCTTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTT
66 AAATCGCGGCCTCGTCAGCGCGCTTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTT
* *
51255754 TTGACGTTTCTGAGCAAATAATATAAAATCGCTTTTAGCAGGATGCTATTTGAGAAGAATTTGTG
1 TTGACGTTTCTGAGAAAATAATATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
* *
51255819 AAATCGC-GCCTTCGT-GGACGCTCTTTTGCTACAGTAG
66 AAATCGCGGCC-TCGTCAG-CGCGCTTTTGCTACAGTAG
51255856 CATGTTTGGG
Statistics
Matches: 94, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
123 4 0.04
124 90 0.96
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (124 bp):
TTGACGTTTCTGAGAAAATAATATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
AAATCGCGGCCTCGTCAGCGCGCTTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTT
Found at i:51259088 original size:116 final size:116
Alignment explanation
Indices: 51258884--51259101 Score: 400
Period size: 116 Copynumber: 1.9 Consensus size: 116
51258874 TGATAAATTG
*
51258884 TATTAAGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATACAATTATTAATTGT
1 TATTAAGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
51258949 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
66 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
* *
51259000 TATTAAGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATGTAAAATTATTATTTGT
1 TATTAAGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
*
51259065 TAGTACGAGTCAAAACATTTTTCCAAATCTAACATTA
66 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTA
51259102 CGTTAAGGTT
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
116 98 1.00
ACGTcount: A:0.43, C:0.09, G:0.10, T:0.39
Consensus pattern (116 bp):
TATTAAGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
Found at i:51259175 original size:23 final size:23
Alignment explanation
Indices: 51259107--51259901 Score: 617
Period size: 23 Copynumber: 33.7 Consensus size: 23
51259097 CATTACGTTA
51259107 AGGTTAGGGTTTTTAAAGTT-AA--
1 AGGTTAGGGTTTTT-AA-TTAAATT
51259129 AGGTTTAGGGTTTTTAAGTT-AATT
1 AGG-TTAGGGTTTTTAA-TTAAATT
*
51259153 AGGCTAGGGTTTTTAATTAAATT
1 AGGTTAGGGTTTTTAATTAAATT
* *
51259176 ATGTTAGGATTTTTAAGTT-AA--
1 AGGTTAGGGTTTTTAA-TTAAATT
* *
51259197 GGGTTTA-GATTTTTAATTGAATTAGGTT
1 AGG-TTAGGGTTTTTAATT-AA--A--TT
51259225 AGGGTTAGGGTTTTTAATT-AA--
1 A-GGTTAGGGTTTTTAATTAAATT
* *
51259246 GGGTTTAGAGTTTTTAATTAAATT
1 AGG-TTAGGGTTTTTAATTAAATT
*
51259270 AGGCTAGGGTTTTTAATTAAATT
1 AGGTTAGGGTTTTTAATTAAATT
*
51259293 AGGCTAGGGTTTTTAATTAAATT
1 AGGTTAGGGTTTTTAATTAAATT
*
51259316 AGGTTGGGGTTTTTAATTAAATT
1 AGGTTAGGGTTTTTAATTAAATT
*
51259339 AGGCTAGGGTTTTTAATTAAATT
1 AGGTTAGGGTTTTTAATTAAATT
*
51259362 AGGCTAGGGTTTTTAATTAAATT
1 AGGTTAGGGTTTTTAATTAAATT
51259385 AGGTTAGGGTTTTTAAGTT--A-T
1 AGGTTAGGGTTTTTAA-TTAAATT
*
51259406 GGGTTTAGGGTTTTTAATTGAATTAGGTT
1 AGG-TTAGGGTTTTTAATT-AA--A--TT
51259435 AGGGTTAGGGTTTTTAATT-AA--
1 A-GGTTAGGGTTTTTAATTAAATT
* *
51259456 GGGTTTAGGGCTTTTAATTAAATT
1 AGG-TTAGGGTTTTTAATTAAATT
51259480 AGGTTAGGGTTTTTAATTAAATT
1 AGGTTAGGGTTTTTAATTAAATT
51259503 AGGTTAGGCTAGGGTTTTTAATTAAATT
1 AGG-T----TAGGGTTTTTAATTAAATT
*
51259531 AGGTTAGGGTTTTTAAGTT-AAGT
1 AGGTTAGGGTTTTTAA-TTAAATT
*
51259554 -GTTTAGGGTTTTTAATTAAATTAGGTT
1 AGGTTAGGGTTTTTAATT-AA--A--TT
51259581 AGGTTAGGGTTTTTAATTAAATT
1 AGGTTAGGGTTTTTAATTAAATT
51259604 AGGTTAGGGTTTTTAAGTT-AA--
1 AGGTTAGGGTTTTTAA-TTAAATT
*
51259625 GGGTTTAGGGTTTTTAATT-AA--
1 AGG-TTAGGGTTTTTAATTAAATT
* *
51259646 GGGTTTAGGGGTTTTAATTAAATT
1 AGG-TTAGGGTTTTTAATTAAATT
**
51259670 AGGCAAGGGTTTTTAATTAAATT
1 AGGTTAGGGTTTTTAATTAAATT
51259693 AGGTTAGGGTTTTTAAGTT-AA--
1 AGGTTAGGGTTTTTAA-TTAAATT
*
51259714 GGGTTTAGGGTTTTTAATTGAATTAGGTT
1 AGG-TTAGGGTTTTTAATT-AA--A--TT
51259743 AGGGTTAGGGTTTTTAATT-AA--
1 A-GGTTAGGGTTTTTAATTAAATT
*
51259764 GGGTTTAGGGTTTTTAATTAAATT
1 AGG-TTAGGGTTTTTAATTAAATT
51259788 AGGTTAGGGTTTTTAATTAAATT
1 AGGTTAGGGTTTTTAATTAAATT
*
51259811 AGGCTAGGGTTTTTAATTAAATTAGCT
1 AGGTTAGGGTTTTTAATTAAA-T---T
* **
51259838 CATGGTTTTGGGTTTTTAATTATTTT
1 -A-GG-TTAGGGTTTTTAATTAAATT
****
51259864 AGGTTAGGGTTTAGGGTTAAATT
1 AGGTTAGGGTTTTTAATTAAATT
51259887 AGGTTAGGGTTTTTA
1 AGGTTAGGGTTTTTA
51259902 TTACATCAAA
Statistics
Matches: 643, Mismatches: 55, Indels: 149
0.76 0.06 0.18
Matches are distributed among these distances:
20 8 0.01
21 88 0.14
22 78 0.12
23 320 0.50
24 26 0.04
25 7 0.01
26 2 0.00
27 8 0.01
28 42 0.07
29 46 0.07
30 18 0.03
ACGTcount: A:0.27, C:0.01, G:0.25, T:0.46
Consensus pattern (23 bp):
AGGTTAGGGTTTTTAATTAAATT
Found at i:51259250 original size:49 final size:51
Alignment explanation
Indices: 51259178--51259280 Score: 165
Period size: 50 Copynumber: 2.1 Consensus size: 51
51259168 ATTAAATTAT
* *
51259178 GTTAGGATTTTTAAGTTAAGGGTTTAGA-TTTTTAATTGAATTAGGTTAGG
1 GTTAGGATTTTTAAGTTAAGGGTTTAGAGTTTTTAATTAAATTAGGCTAGG
*
51259228 GTTAGGGTTTTTAA-TTAAGGGTTTAGAGTTTTTAATTAAATTAGGCTAGG
1 GTTAGGATTTTTAAGTTAAGGGTTTAGAGTTTTTAATTAAATTAGGCTAGG
51259278 GTT
1 GTT
51259281 TTTAATTAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
49 13 0.27
50 36 0.73
ACGTcount: A:0.27, C:0.01, G:0.26, T:0.46
Consensus pattern (51 bp):
GTTAGGATTTTTAAGTTAAGGGTTTAGAGTTTTTAATTAAATTAGGCTAGG
Found at i:51259258 original size:21 final size:20
Alignment explanation
Indices: 51259225--51259266 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
51259215 GAATTAGGTT
*
51259225 AGGGTTAGGGTTTTTAATTA
1 AGGGTTAGAGTTTTTAATTA
51259245 AGGGTTTAGAGTTTTTAATTA
1 AGGG-TTAGAGTTTTTAATTA
51259266 A
1 A
51259267 ATTAGGCTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.29, C:0.00, G:0.26, T:0.45
Consensus pattern (20 bp):
AGGGTTAGAGTTTTTAATTA
Found at i:51259259 original size:117 final size:118
Alignment explanation
Indices: 51259098--51259312 Score: 328
Period size: 117 Copynumber: 1.8 Consensus size: 118
51259088 CAAATCTAAC
*
51259098 ATTACGTTAAGGTTAGGGTTTTTAAAGTTAAAGGTTTAGGGTTTTTAAGTT-AATTAGGCTAGGG
1 ATTACGTTAAGGTTAGGGTTTTTAAAGTTAAAGGTTTAGAGTTTTTAA-TTAAATTAGGCTAGGG
* *
51259162 TTTTTAATTAAATTATGTTAGGATTTTTAAGTTAAGGGTTTAGATTTTTAATTGA
65 TTTTTAATTAAATTAGGCTAGGATTTTTAA-TTAAGGGTTTAGATTTTTAATTGA
* * *
51259217 ATTAGGTTAGGGTTAGGGTTTTT-AA-TTAAGGGTTTAGAGTTTTTAATTAAATTAGGCTAGGGT
1 ATTACGTTAAGGTTAGGGTTTTTAAAGTTAAAGGTTTAGAGTTTTTAATTAAATTAGGCTAGGGT
*
51259280 TTTTAATTAAATTAGGCTAGGGTTTTTAATTAA
66 TTTTAATTAAATTAGGCTAGGATTTTTAATTAA
51259313 ATTAGGTTGG
Statistics
Matches: 88, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
116 6 0.07
117 59 0.67
118 2 0.02
119 21 0.24
ACGTcount: A:0.29, C:0.02, G:0.23, T:0.46
Consensus pattern (118 bp):
ATTACGTTAAGGTTAGGGTTTTTAAAGTTAAAGGTTTAGAGTTTTTAATTAAATTAGGCTAGGGT
TTTTAATTAAATTAGGCTAGGATTTTTAATTAAGGGTTTAGATTTTTAATTGA
Found at i:51259283 original size:73 final size:72
Alignment explanation
Indices: 51259151--51259835 Score: 556
Period size: 73 Copynumber: 9.7 Consensus size: 72
51259141 TTTAAGTTAA
* * * *
51259151 TTAGGCTAGGGTTTTTAATTAAATTATGTTAGGATTTTTAAGTT-AA--GGGTTTA-GATTTTTA
1 TTAGGCTAGGGTTTTTAATTAAA-TAGGTTAGGGTTTTTAA-TTAAATTAGG-TTAGGGTTTTTA
51259212 ATTGAATTAGG
63 ATT-AATTAGG
* * * *
51259223 TTAGGGTTAGGGTTTTTAATT-AA-GGGTTTAGAGTTTTTAATTAAATTAGGCTAGGGTTTTTAA
1 TTA-GGCTAGGGTTTTTAATTAAATAGG-TTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAA
51259286 TTAA--A--
64 TTAATTAGG
* *
51259291 TTAGGCTAGGGTTTTTAATTAAATTAGGTTGGGGTTTTTAATTAAATTAGGCTAGGGTTTTTAAT
1 TTAGGCTAGGGTTTTTAATTAAA-TAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAT
51259356 TAA--A--
65 TAATTAGG
*
51259360 TTAGGCTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTT--A-TGGGTTTAGGGTTTTTA
1 TTAGGCTAGGGTTTTTAATTAAA-TAGGTTAGGGTTTTTAA-TTAAATTAGG-TTAGGGTTTTTA
51259422 ATTGAATTAGG
63 ATT-AATTAGG
* * *
51259433 TTAGGGTTAGGGTTTTTAATT-AA-GGGTTTAGGGCTTTTAATTAAATTAGGTTAGGGTTTTTAA
1 TTA-GGCTAGGGTTTTTAATTAAATAGG-TTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAA
51259496 TTAAATTAGG
64 TT-AATTAGG
* *
51259506 TTAGGCTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTT-AAGT-GTTTAGGGTTTTTAA
1 TTAGGCTAGGGTTTTTAATTAAA-TAGGTTAGGGTTTTTAA-TTAAATTAGGTTAGGGTTTTTAA
51259569 TTAAATTAGG
64 TT-AATTAGG
* *
51259579 TTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTT-AA--GGGTTTAGGGTTTTTA
1 TTAGGCTAGGGTTTTTAATTAAA-TAGGTTAGGGTTTTTAA-TTAAATTAGG-TTAGGGTTTTTA
*
51259641 ATTAA--GGG
63 ATTAATTAGG
* **
51259649 TT----TAGGGGTTTTAATTAAATTAGGCAAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAG
1 TTAGGCTAGGGTTTTTAATTAAA-TAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAA-
*
51259710 TTAA--GGG
64 TTAATTAGG
*
51259717 TT----TAGGGTTTTTAATTGAATTAGGTTAGGGTTAGGGTTTTTAATT-AA--GGGTTTAGGGT
1 TTAGGCTAGGGTTTTTAATT-AA--A---TA-GGTTAGGGTTTTTAATTAAATTAGG-TTAGGGT
51259775 TTTTAATTAA--A--
58 TTTTAATTAATTAGG
* *
51259786 TTAGGTTAGGGTTTTTAATTAAATTAGGCTAGGGTTTTTAATTAAATTAG
1 TTAGGCTAGGGTTTTTAATTAAA-TAGGTTAGGGTTTTTAATTAAATTAG
51259836 CTCATGGTTT
Statistics
Matches: 529, Mismatches: 39, Indels: 92
0.80 0.06 0.14
Matches are distributed among these distances:
65 2 0.00
66 34 0.06
67 48 0.09
68 49 0.09
69 85 0.16
70 14 0.03
71 25 0.05
72 55 0.10
73 164 0.31
74 49 0.09
75 4 0.01
ACGTcount: A:0.28, C:0.01, G:0.25, T:0.46
Consensus pattern (72 bp):
TTAGGCTAGGGTTTTTAATTAAATAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATT
AATTAGG
Found at i:51259509 original size:28 final size:28
Alignment explanation
Indices: 51259478--51259611 Score: 157
Period size: 28 Copynumber: 5.2 Consensus size: 28
51259468 TTTAATTAAA
51259478 TTAGGTTAGGGTTTTTAATTAAATTAGG
1 TTAGGTTAGGGTTTTTAATTAAATTAGG
*
51259506 TTAGGCTAGGGTTTTTAATT-AA--A--
1 TTAGGTTAGGGTTTTTAATTAAATTAGG
51259529 TTAGGTTAGGGTTTTTAAGTT--A--A-G
1 TTAGGTTAGGGTTTTTAA-TTAAATTAGG
*
51259553 -T-GTTTAGGGTTTTTAATTAAATTAGG
1 TTAGGTTAGGGTTTTTAATTAAATTAGG
51259579 TTAGGTTAGGGTTTTTAATTAAATTAGG
1 TTAGGTTAGGGTTTTTAATTAAATTAGG
51259607 TTAGG
1 TTAGG
51259612 GTTTTTAAGT
Statistics
Matches: 93, Mismatches: 4, Indels: 18
0.81 0.03 0.16
Matches are distributed among these distances:
21 2 0.02
22 14 0.15
23 21 0.23
24 2 0.02
25 2 0.02
26 1 0.01
27 3 0.03
28 48 0.52
ACGTcount: A:0.28, C:0.01, G:0.25, T:0.46
Consensus pattern (28 bp):
TTAGGTTAGGGTTTTTAATTAAATTAGG
Found at i:51259720 original size:308 final size:298
Alignment explanation
Indices: 51259227--51259835 Score: 938
Period size: 308 Copynumber: 2.0 Consensus size: 298
51259217 ATTAGGTTAG
51259227 GGTTAGGGTTTTTAATTAAGGGTTTAGAGTTTTTAATTAAATTAGGCTAGGGTTTTTAATTAAAT
1 GGTTAGGGTTTTTAATTAAGGGTTTAGAGTTTTTAATTAAATTAGGCTAGGGTTTTTAATTAAAT
* *
51259292 TAGGCTAGGGTTTTTAATTAAATTAGGTTGGGGTTTTTAATTAAATTAGGCTAGGGTTTTTAATT
66 TAGGCTAGGGTTTTTAATTAAA-TAGGTTAGGGTTTTTAATTAAA-TAGGCTAGGGGTTTTAATT
* *
51259357 AAATTAGGCTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTTATGGGTTTAGGGTTTTTA
129 AAATTAGGCAAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTA
51259422 ATTGAATTAGGTTAGGGTTAGGGTTTTTAATTAAGGGTTTAGGGCTTTTAATTAAATTAGGTTAG
194 ATTGAATTAGGTTAGGGTTAGGGTTTTTAATTAAGGGTTTAGGGCTTTTAATTAAATTAGGTTAG
51259487 GGTTTTTAATTAAATTAGGTTAGGCTAGGGTTTTTAATTAAATTA
259 GGTTTTTAATT-AA--A--TTAGGCTAGGGTTTTTAATTAAATTA
* * *
51259532 GGTTAGGGTTTTTAAGTTAAGTGTTTAGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTTAA
1 GGTTAGGGTTTTTAA-TTAAGGGTTTAGAGTTTTTAATT-AA--A--TTAGGCTAGGGTTTTTAA
* * * *
51259597 TTAAATTAGGTTAGGGTTTTTAAGTT-AA-GGGTTTAGGGTTTTTAATT-AA-GGGTTTAGGGGT
60 TTAAATTAGGCTAGGGTTTTTAA-TTAAATAGG-TTAGGGTTTTTAATTAAATAGG-CTAGGGGT
51259658 TTTAATTAAATTAGGCAAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTTAAGGGTTTAGG
122 TTTAATTAAATTAGGCAAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTTAAGGGTTTAGG
*
51259723 GTTTTTAATTGAATTAGGTTAGGGTTAGGGTTTTTAATTAAGGGTTTAGGGTTTTTAATTAAATT
187 GTTTTTAATTGAATTAGGTTAGGGTTAGGGTTTTTAATTAAGGGTTTAGGGCTTTTAATTAAATT
51259788 AGGTTAGGGTTTTTAATTAAATTAGGCTAGGGTTTTTAATTAAATTA
252 AGGTTAGGGTTTTTAATTAAATTAGGCTAGGGTTTTTAATTAAATTA
51259835 G
1 G
51259836 CTCATGGTTT
Statistics
Matches: 283, Mismatches: 12, Indels: 20
0.90 0.04 0.06
Matches are distributed among these distances:
303 27 0.10
305 16 0.06
306 21 0.07
307 6 0.02
308 151 0.53
309 5 0.02
310 14 0.05
311 41 0.14
312 2 0.01
ACGTcount: A:0.28, C:0.01, G:0.25, T:0.46
Consensus pattern (298 bp):
GGTTAGGGTTTTTAATTAAGGGTTTAGAGTTTTTAATTAAATTAGGCTAGGGTTTTTAATTAAAT
TAGGCTAGGGTTTTTAATTAAATAGGTTAGGGTTTTTAATTAAATAGGCTAGGGGTTTTAATTAA
ATTAGGCAAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAT
TGAATTAGGTTAGGGTTAGGGTTTTTAATTAAGGGTTTAGGGCTTTTAATTAAATTAGGTTAGGG
TTTTTAATTAAATTAGGCTAGGGTTTTTAATTAAATTA
Found at i:51259796 original size:50 final size:51
Alignment explanation
Indices: 51259694--51259798 Score: 194
Period size: 50 Copynumber: 2.1 Consensus size: 51
51259684 AATTAAATTA
*
51259694 GGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTGAATTAGGTTAG
1 GGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTAAATTAGGTTAG
51259745 GGTTAGGGTTTTTAA-TTAAGGGTTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTAAATTAGGTTAG
51259795 GGTT
1 GGTT
51259799 TTTAATTAAA
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
50 38 0.72
51 15 0.28
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (51 bp):
GGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTAAATTAGGTTAG
Found at i:51259898 original size:53 final size:53
Alignment explanation
Indices: 51259794--51259899 Score: 122
Period size: 53 Copynumber: 2.0 Consensus size: 53
51259784 AATTAGGTTA
** *
51259794 GGGTTTTTAATTAAATTAGGCTAGGGTTTTTAATTAAATTAGCTCATGGTTTT
1 GGGTTTTTAATTAAATTAGGCTAGGGTTTAGAATTAAATTAGCTCAGGGTTTT
** * ** * *
51259847 GGGTTTTTAATTATTTTAGGTTAGGGTTTAGGGTTAAATTAGGTTAGGGTTTT
1 GGGTTTTTAATTAAATTAGGCTAGGGTTTAGAATTAAATTAGCTCAGGGTTTT
51259900 TATTACATCA
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
53 43 1.00
ACGTcount: A:0.24, C:0.03, G:0.25, T:0.48
Consensus pattern (53 bp):
GGGTTTTTAATTAAATTAGGCTAGGGTTTAGAATTAAATTAGCTCAGGGTTTT
Found at i:51259981 original size:43 final size:45
Alignment explanation
Indices: 51259907--51259992 Score: 140
Period size: 43 Copynumber: 2.0 Consensus size: 45
51259897 TTTTATTACA
* *
51259907 TCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAAC
1 TCAAATAAAATTCTATTTTATTACATAAAATAATATCAAAATAAC
51259952 TCAAA-AAAATTCTATTTT-TTACATAAAATAATATCAAAATA
1 TCAAATAAAATTCTATTTTATTACATAAAATAATATCAAAATA
51259993 TTCAAAATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
43 22 0.56
44 12 0.31
45 5 0.13
ACGTcount: A:0.51, C:0.13, G:0.00, T:0.36
Consensus pattern (45 bp):
TCAAATAAAATTCTATTTTATTACATAAAATAATATCAAAATAAC
Found at i:51260438 original size:18 final size:18
Alignment explanation
Indices: 51260415--51260449 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
51260405 CGGAAAAGGA
*
51260415 TACATATAAGGGTTAGGG
1 TACATATAAGGGCTAGGG
51260433 TACATATAAGGGCTAGG
1 TACATATAAGGGCTAGG
51260450 AAATGCACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (18 bp):
TACATATAAGGGCTAGGG
Found at i:51261111 original size:7 final size:7
Alignment explanation
Indices: 51261101--51261125 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
51261091 ATACATACAT
51261101 AATACTA
1 AATACTA
51261108 AATACTA
1 AATACTA
51261115 AATACTA
1 AATACTA
51261122 AATA
1 AATA
51261126 TCAATCAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:51262380 original size:22 final size:22
Alignment explanation
Indices: 51262355--51262405 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
51262345 AAATATAGAT
51262355 TTGAGAGAATTTTAGAAGGAAA
1 TTGAGAGAATTTTAGAAGGAAA
*
51262377 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTAGAAGGAAA
51262399 TTGAGAG
1 TTGAGAG
51262406 GAAATATGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.41, C:0.00, G:0.31, T:0.27
Consensus pattern (22 bp):
TTGAGAGAATTTTAGAAGGAAA
Found at i:51262383 original size:51 final size:51
Alignment explanation
Indices: 51262268--51262383 Score: 205
Period size: 51 Copynumber: 2.3 Consensus size: 51
51262258 TATTTAAAAA
* * *
51262268 AAGGAAATTGAGAAGAAATTGAAATTAAATATGGATTTGAGAGAATTTTTG
1 AAGGAAATTGAGAGGAAATTGAAATTAAATATAGATTTGAGAGAATTTTAG
51262319 AAGGAAATTGAGAGGAAATTGAAATTAAATATAGATTTGAGAGAATTTTAG
1 AAGGAAATTGAGAGGAAATTGAAATTAAATATAGATTTGAGAGAATTTTAG
51262370 AAGGAAATTGAGAG
1 AAGGAAATTGAGAG
51262384 AATTTTGGAA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.47, C:0.00, G:0.25, T:0.28
Consensus pattern (51 bp):
AAGGAAATTGAGAGGAAATTGAAATTAAATATAGATTTGAGAGAATTTTAG
Found at i:51262796 original size:17 final size:16
Alignment explanation
Indices: 51262763--51262801 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
51262753 TTTAGCATAA
*
51262763 AAAATTGATTAATTAT
1 AAAATTGATTAAGTAT
*
51262779 AAAATTGATTCAGGTAT
1 AAAATTGATT-AAGTAT
51262796 AAAATT
1 AAAATT
51262802 TTGTTTGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.49, C:0.03, G:0.10, T:0.38
Consensus pattern (16 bp):
AAAATTGATTAAGTAT
Found at i:51266629 original size:114 final size:114
Alignment explanation
Indices: 51266383--51266647 Score: 262
Period size: 114 Copynumber: 2.3 Consensus size: 114
51266373 CTCCCAGTAT
* * * *
51266383 CAAAAGTATCAATACTACCCATAGCTAGAATCGATACTAATTTCAGCTTCCATGTTTTAAAAAAA
1 CAAAAGTATC-A-A-TACCCATAGCTAGTATCGATACCAATTTCAACTTCAATGTTTTAAAAAAA
* *
51266448 TGAAAAATAAATCCTAATTATCGATGCCTTCACCAACGTATCAATACCAAAC
63 TGAAAAATAAATCCTAAATATCGATACCTTCACCAACGTATCAATACCAAAC
* ** * * ** *
51266500 CATAAGTATTGATACCTATAACTAGTATCGATACCAATTTCAACTTCAATGTTTTGGAAAATTGA
1 CAAAAGTATCAATACCCATAGCTAGTATCGATACCAATTTCAACTTCAATGTTTTAAAAAAATGA
* * ** * * * **
51266565 GAAATAAATCTTAAATATC-ATTACCTTCATGAAGGTGTCGATACCATGC
66 AAAATAAATCCTAAATATCGA-TACCTTCACCAACGTATCAATACCAAAC
* *
51266614 CAAAAGTATCAATACCCATAGCTAATATTGATAC
1 CAAAAGTATCAATACCCATAGCTAGTATCGATAC
51266648 TGACCGCCTC
Statistics
Matches: 117, Mismatches: 30, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
113 1 0.01
114 107 0.91
115 1 0.01
117 8 0.07
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.30
Consensus pattern (114 bp):
CAAAAGTATCAATACCCATAGCTAGTATCGATACCAATTTCAACTTCAATGTTTTAAAAAAATGA
AAAATAAATCCTAAATATCGATACCTTCACCAACGTATCAATACCAAAC
Found at i:51270333 original size:23 final size:22
Alignment explanation
Indices: 51270294--51270338 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
51270284 AATTATTTTG
*
51270294 GATGTTCATGACTTTGGTATAAT
1 GATGTTAATGACTTTGG-ATAAT
51270317 GATGTTAATGA-TGTTGGATAAT
1 GATGTTAATGACT-TTGGATAAT
51270339 TTGGTATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.29, C:0.04, G:0.24, T:0.42
Consensus pattern (22 bp):
GATGTTAATGACTTTGGATAAT
Found at i:51277983 original size:27 final size:27
Alignment explanation
Indices: 51277931--51278317 Score: 391
Period size: 27 Copynumber: 14.4 Consensus size: 27
51277921 CCCTAAAATA
* * **
51277931 GGTATAATGACCGTAATACCTTTATAG
1 GGTAAAATGACCGTAATGCCCCTATAG
* * *
51277958 GGTGAAGTGATCGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTATAG
*
51277985 GGTAAAATGACTGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTATAG
* * * *
51278012 GATAAAATGATCGTAATACCCCTAAAG
1 GGTAAAATGACCGTAATGCCCCTATAG
*
51278039 GGT-AAATGACCGTAATGACCCTATAG
1 GGTAAAATGACCGTAATGCCCCTATAG
* * *
51278065 GGT-AAATGACCGTAATGTCGCTATAA
1 GGTAAAATGACCGTAATGCCCCTATAG
* * * * *
51278091 GGTAAAATCACTGTAATGCCCTTGTAT
1 GGTAAAATGACCGTAATGCCCCTATAG
*
51278118 GGTAAAATGATCGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTATAG
* * *
51278145 GGTAAAATGATCGTAATGCCCTTGTAG
1 GGTAAAATGACCGTAATGCCCCTATAG
* * *
51278172 GTTAAAATGACCGTAACGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTATAG
* * * *
51278199 GGTAAAATGGCCGTAACGCCGCTGTAG
1 GGTAAAATGACCGTAATGCCCCTATAG
** *
51278226 GGTAAAATGACTTTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTATAG
* * **
51278253 GGTAAAATAACCTTAATGCCCCCGTAG
1 GGTAAAATGACCGTAATGCCCCTATAG
* *
51278280 GGTAAAATGATCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTATAG
51278307 GGTAAAATGAC
1 GGTAAAATGAC
51278318 TATTTTACCC
Statistics
Matches: 300, Mismatches: 59, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
26 45 0.15
27 255 0.85
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCCTATAG
Found at i:51278383 original size:24 final size:24
Alignment explanation
Indices: 51278336--51278468 Score: 113
Period size: 24 Copynumber: 5.5 Consensus size: 24
51278326 CCTTTAGGGT
* ** *
51278336 TAAATGATTGATTTACCTATGATG
1 TAAATGACTGATTTGTCTGTGATG
* *
51278360 TAAATGAATGATTTGTCTGAGATG
1 TAAATGACTGATTTGTCTGTGATG
* * *
51278384 TAAAAGACTGATTTGTCAGTGATT
1 TAAATGACTGATTTGTCTGTGATG
* * * *
51278408 TAAATGACTAATTTTTCTGTCATT
1 TAAATGACTGATTTGTCTGTGATG
* *
51278432 TAAATGATTGATTTGTCTGTGATT
1 TAAATGACTGATTTGTCTGTGATG
**
51278456 TGTATGACTGATT
1 TAAATGACTGATT
51278469 CCGTGCATGG
Statistics
Matches: 87, Mismatches: 22, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 87 1.00
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.44
Consensus pattern (24 bp):
TAAATGACTGATTTGTCTGTGATG
Found at i:51278661 original size:32 final size:32
Alignment explanation
Indices: 51278616--51278800 Score: 217
Period size: 32 Copynumber: 5.8 Consensus size: 32
51278606 TCGATGCTAT
* *
51278616 TGATGGCTTTGTGCCAATCATATTACCATTAT
1 TGATGGCTTTGTGCCAATCATATTACTATTAC
* * * *
51278648 TGATGGGTGTGTGCCGATCATATTACCATTAC
1 TGATGGCTTTGTGCCAATCATATTACTATTAC
* * * *
51278680 TGATGACTATGTGCCGATCATATTACTACTAC
1 TGATGGCTTTGTGCCAATCATATTACTATTAC
* * *
51278712 TAATGGCTTTGTGTCAATCATACTACTATTAC
1 TGATGGCTTTGTGCCAATCATATTACTATTAC
* * * *
51278744 TGATGGCTGTGTACCGATCATATTACTACTAC
1 TGATGGCTTTGTGCCAATCATATTACTATTAC
51278776 TGATGGCTTTGTGCCAATCATATTA
1 TGATGGCTTTGTGCCAATCATATTA
51278801 TTGTACTTAT
Statistics
Matches: 127, Mismatches: 26, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 127 1.00
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.37
Consensus pattern (32 bp):
TGATGGCTTTGTGCCAATCATATTACTATTAC
Found at i:51278789 original size:96 final size:96
Alignment explanation
Indices: 51278618--51278800 Score: 267
Period size: 96 Copynumber: 1.9 Consensus size: 96
51278608 GATGCTATTG
* * * * *
51278618 ATGGCTTTGTGCCAATCATATTACCATTATTGATGGGTGTGTGCCGATCATATTACCATTACTGA
1 ATGGCTTTGTGCCAATCATACTACCATTACTGATGGCTGTGTACCGATCATATTACCACTACTGA
*
51278683 TGACTATGTGCCGATCATATTACTACTACTA
66 TGACTATGTGCCAATCATATTACTACTACTA
* * *
51278714 ATGGCTTTGTGTCAATCATACTACTATTACTGATGGCTGTGTACCGATCATATTACTACTACTGA
1 ATGGCTTTGTGCCAATCATACTACCATTACTGATGGCTGTGTACCGATCATATTACCACTACTGA
* *
51278779 TGGCTTTGTGCCAATCATATTA
66 TGACTATGTGCCAATCATATTA
51278801 TTGTACTTAT
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
96 76 1.00
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (96 bp):
ATGGCTTTGTGCCAATCATACTACCATTACTGATGGCTGTGTACCGATCATATTACCACTACTGA
TGACTATGTGCCAATCATATTACTACTACTA
Found at i:51278837 original size:22 final size:22
Alignment explanation
Indices: 51278807--51278852 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
51278797 ATTATTGTAC
* * *
51278807 TTATGGCTTGTAGCCATTCTGT
1 TTATAGCTTATAGCCATCCTGT
*
51278829 TTATAGCTTATAGCTATCCTGT
1 TTATAGCTTATAGCCATCCTGT
51278851 TT
1 TT
51278853 TCGGCTCTTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.48
Consensus pattern (22 bp):
TTATAGCTTATAGCCATCCTGT
Found at i:51280935 original size:33 final size:36
Alignment explanation
Indices: 51280857--51280978 Score: 144
Period size: 33 Copynumber: 3.5 Consensus size: 36
51280847 TGATATTCTT
* ** * *
51280857 ATTCGCATGTTAAGCATGCTATTA-AGCTGACTTTG
1 ATTCGCATGTTAAGCATGCCATTATTTCTTATTTTG
*
51280892 ACTCGCATGTTAAGCATGCC-TT-TTT-TTATTTTG
1 ATTCGCATGTTAAGCATGCCATTATTTCTTATTTTG
* *
51280925 ATTCGTATGTTAAGCATGCCATTATTTCTTATTATG
1 ATTCGCATGTTAAGCATGCCATTATTTCTTATTTTG
51280961 ATTCGCATGTTAAGCATG
1 ATTCGCATGTTAAGCATG
51280979 TCACTCTGTT
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
33 24 0.33
34 4 0.05
35 21 0.29
36 24 0.33
ACGTcount: A:0.24, C:0.16, G:0.17, T:0.43
Consensus pattern (36 bp):
ATTCGCATGTTAAGCATGCCATTATTTCTTATTTTG
Done.