Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 166 of 207
Found at i:51280964 original size:36 final size:33
Alignment explanation
Indices: 51280894--51280978 Score: 125
Period size: 36 Copynumber: 2.5 Consensus size: 33
51280884 TGACTTTGAC
*
51280894 TCGCATGTTAAGCATGCCTTTTTTTATTTTGAT
1 TCGCATGTTAAGCATGCCTTTTTTTATTATGAT
*
51280927 TCGTATGTTAAGCATGCCATTATTTCTTATTATGAT
1 TCGCATGTTAAGCATGCC-TT-TTT-TTATTATGAT
51280963 TCGCATGTTAAGCATG
1 TCGCATGTTAAGCATG
51280979 TCACTCTGTT
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
33 17 0.37
34 2 0.04
35 3 0.07
36 24 0.52
ACGTcount: A:0.22, C:0.15, G:0.16, T:0.46
Consensus pattern (33 bp):
TCGCATGTTAAGCATGCCTTTTTTTATTATGAT
Found at i:51286312 original size:49 final size:48
Alignment explanation
Indices: 51286211--51286317 Score: 117
Period size: 49 Copynumber: 2.2 Consensus size: 48
51286201 AGTGGTATAC
* * * *
51286211 CCACAATATTCTATATTTGCAGTATATCTGCATTATCTGGTAGCTTGA
1 CCACAATATTCTATATTTGCAGTAGATCTGCACTATCTAGTAGATTGA
* * * *
51286259 CCACAATATTCTATTTTTGGCAGCTCGA-CTGCACTATCTAGTGGATTGT
1 CCACAATATTCTATATTT-GCAG-TAGATCTGCACTATCTAGTAGATTGA
51286308 CCACAATATT
1 CCACAATATT
51286318 GGTGTGTTAT
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
48 17 0.35
49 30 0.61
50 2 0.04
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.37
Consensus pattern (48 bp):
CCACAATATTCTATATTTGCAGTAGATCTGCACTATCTAGTAGATTGA
Found at i:51287581 original size:44 final size:44
Alignment explanation
Indices: 51287518--51287605 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
51287508 TGCATAGTGT
51287518 CATCGATGACCCTGTTGAATTGAAATGTCTCACAAAGTTGGAGA
1 CATCGATGACCCTGTTGAATTGAAATGTCTCACAAAGTTGGAGA
51287562 CATCGATGACCCTGTTGAATTGAAATGTCTCACAAAGTTGGAGA
1 CATCGATGACCCTGTTGAATTGAAATGTCTCACAAAGTTGGAGA
51287606 AAATGTTTTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (44 bp):
CATCGATGACCCTGTTGAATTGAAATGTCTCACAAAGTTGGAGA
Found at i:51288201 original size:21 final size:19
Alignment explanation
Indices: 51288136--51288229 Score: 143
Period size: 19 Copynumber: 4.8 Consensus size: 19
51288126 AATTTTTGAG
*
51288136 GATATGCAATCTTAGATGT
1 GATATGCAATCTTAGATAT
*
51288155 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
51288174 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
51288193 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
51288214 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
51288230 AGATTTGATT
Statistics
Matches: 69, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
19 50 0.72
21 19 0.28
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:51288211 original size:40 final size:38
Alignment explanation
Indices: 51288136--51288229 Score: 143
Period size: 40 Copynumber: 2.4 Consensus size: 38
51288126 AATTTTTGAG
*
51288136 GATATGCAATCTTAGATGTGATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCCTAGATAT
*
51288174 GATATGCAATCTTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATG--ATATGCAATCCTAGATAT
*
51288214 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
51288230 AGATTTGATT
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
38 19 0.37
40 32 0.63
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGCAATCCTAGATAT
Found at i:51288238 original size:22 final size:22
Alignment explanation
Indices: 51288187--51288265 Score: 58
Period size: 22 Copynumber: 3.7 Consensus size: 22
51288177 ATGCAATCTT
* *
51288187 AGATATGATATATGCAATCTT--
1 AGATTTGAT-TATGTAATCTTAG
*
51288208 AGATATGA-TATGTAATCTTAG
1 AGATTTGATTATGTAATCTTAG
* *
51288229 AAGATTTGATTTTGTTATCTTAG
1 -AGATTTGATTATGTAATCTTAG
*
51288252 AGATTTAATT-TGTA
1 AGATTTGATTATGTA
51288266 GATACCCTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
19 10 0.21
21 11 0.23
22 16 0.33
23 11 0.23
ACGTcount: A:0.34, C:0.05, G:0.16, T:0.44
Consensus pattern (22 bp):
AGATTTGATTATGTAATCTTAG
Found at i:51289671 original size:98 final size:98
Alignment explanation
Indices: 51289541--51289737 Score: 340
Period size: 98 Copynumber: 2.0 Consensus size: 98
51289531 TTAAAAATAA
* *
51289541 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGGATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
* *
51289606 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAATGGATATTCTTTTAAAG
* *
51289639 TAAATGAAATATTTCGAGTTTGGGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
51289704 TTAAATCTTGGATAAATGGATATTCTTTTAAAG
66 TTAAATCTTGGATAAATGGATATTCTTTTAAAG
51289737 T
1 T
51289738 TTTATTGTAC
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.39
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAATGGATATTCTTTTAAAG
Found at i:51291660 original size:11 final size:11
Alignment explanation
Indices: 51291644--51291668 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
51291634 ACTGTGGAAA
51291644 TATAAATTTAT
1 TATAAATTTAT
51291655 TATAAATTTAT
1 TATAAATTTAT
51291666 TAT
1 TAT
51291669 TCGAATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
TATAAATTTAT
Found at i:51294522 original size:54 final size:54
Alignment explanation
Indices: 51294440--51294620 Score: 213
Period size: 54 Copynumber: 3.4 Consensus size: 54
51294430 GGTAGTCCAC
* * * *
51294440 TCAGAGTTCACCGCAAAGGCTATTCTTTTAGAGTTTGCCGTAAAGGCTATTCTT
1 TCAGAGTTCACCACAAAGGCTATTCTTTTAGAGTTTGCCATAATGACTATTCTT
*** *
51294494 TCAGAGTTTTTCACAAAGGCTATTCTTTTAGAGTTTTCCATAATGACTATT-TT
1 TCAGAGTTCACCACAAAGGCTATTCTTTTAGAGTTTGCCATAATGACTATTCTT
** * *
51294547 TCAGAGTTCACCACAAAGAAT-TTTTTTTAGAGTTCGCCATAATGACTATTCTT
1 TCAGAGTTCACCACAAAGGCTATTCTTTTAGAGTTTGCCATAATGACTATTCTT
* * *
51294600 TCAAAGTTCGCCAAAAAGGCT
1 TCAGAGTTCACCACAAAGGCT
51294621 TACAAAATTC
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
52 26 0.25
53 36 0.34
54 43 0.41
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (54 bp):
TCAGAGTTCACCACAAAGGCTATTCTTTTAGAGTTTGCCATAATGACTATTCTT
Found at i:51294552 original size:26 final size:27
Alignment explanation
Indices: 51294454--51294617 Score: 116
Period size: 27 Copynumber: 6.1 Consensus size: 27
51294444 AGTTCACCGC
* * *
51294454 AAAGGCTATTCTTTTAGAGTTTGCCGT
1 AAAGACTATTCTTTCAGAGTTTGCCAT
* ** *
51294481 AAAGGCTATTCTTTCAGAGTTTTTCAC
1 AAAGACTATTCTTTCAGAGTTTGCCAT
* * *
51294508 AAAGGCTATTCTTTTAGAGTTTTCCAT
1 AAAGACTATTCTTTCAGAGTTTGCCAT
* ** *
51294535 AATGACTATT-TTTCAGAGTTCACCAC
1 AAAGACTATTCTTTCAGAGTTTGCCAT
* * * *
51294561 AAAGAAT-TTTTTTTAGAGTTCGCCAT
1 AAAGACTATTCTTTCAGAGTTTGCCAT
* * * *
51294587 AATGACTATTCTTTCAAAGTTCGCCAA
1 AAAGACTATTCTTTCAGAGTTTGCCAT
51294614 AAAG
1 AAAG
51294618 GCTTACAAAA
Statistics
Matches: 109, Mismatches: 26, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
25 2 0.02
26 35 0.32
27 72 0.66
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.38
Consensus pattern (27 bp):
AAAGACTATTCTTTCAGAGTTTGCCAT
Found at i:51297003 original size:27 final size:27
Alignment explanation
Indices: 51296973--51297057 Score: 71
Period size: 27 Copynumber: 3.1 Consensus size: 27
51296963 ACTTACCGTT
* *
51296973 CCTTCAGAGTTCACCATACATAGTATC
1 CCTTCAGAGTTCACCACACATACTATC
* * * *
51297000 CCTTTAGTGTTCGCCACACATACTATT
1 CCTTCAGAGTTCACCACACATACTATC
* ** * *
51297027 CCTTCAGTGTTTGCCACGCATACTATA
1 CCTTCAGAGTTCACCACACATACTATC
51297054 CCTT
1 CCTT
51297058 TAGAATTATT
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.24, C:0.31, G:0.12, T:0.34
Consensus pattern (27 bp):
CCTTCAGAGTTCACCACACATACTATC
Found at i:51297295 original size:54 final size:53
Alignment explanation
Indices: 51297177--51297331 Score: 145
Period size: 54 Copynumber: 2.9 Consensus size: 53
51297167 ATTTTCATTT
* * * *
51297177 GCCACAAGGGTTTTCC-TTTCCTTAGATCACCACAAAGGCTTCTAGTTTATAGATC
1 GCCACAAAGG-TTTCCATTT-CATAGATCGCCACAAAGGCTTCCA-TTTATAGATC
** * * *
51297232 GCCTTAAAGGCTTT-CAGTTT-GTAGATCGCCACAAAGGCTTCCATTTAATAGGTT
1 GCCACAAAGG-TTTCCA-TTTCATAGATCGCCACAAAGGCTTCCATTT-ATAGATC
*
51297286 GCCACAAAGGTTTCCATTTCATAGATTGCCACAAAGGCTTCCATTT
1 GCCACAAAGGTTTCCATTTCATAGATCGCCACAAAGGCTTCCATTT
51297332 CCTGGCGTGT
Statistics
Matches: 82, Mismatches: 13, Indels: 11
0.77 0.12 0.10
Matches are distributed among these distances:
53 9 0.11
54 60 0.73
55 10 0.12
56 3 0.04
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.32
Consensus pattern (53 bp):
GCCACAAAGGTTTCCATTTCATAGATCGCCACAAAGGCTTCCATTTATAGATC
Found at i:51297332 original size:27 final size:26
Alignment explanation
Indices: 51297199--51297331 Score: 140
Period size: 27 Copynumber: 5.0 Consensus size: 26
51297189 TTCCTTTCCT
* *
51297199 TAGATCACCACAAAGGCTTCTAGTTTA
1 TAGATCGCCACAAAGGCTTCCA-TTTA
** * *
51297226 TAGATCGCCTTAAAGGCTTTCAGTTTG
1 TAGATCGCCACAAAGGCTTCCA-TTTA
51297253 TAGATCGCCACAAAGGCTTCCATTTAA
1 TAGATCGCCACAAAGGCTTCCATTT-A
* * *
51297280 TAGGTTGCCACAAAGGTTTCCATTTCA
1 TAGATCGCCACAAAGGCTTCCATTT-A
*
51297307 TAGATTGCCACAAAGGCTTCCATTT
1 TAGATCGCCACAAAGGCTTCCATTT
51297332 CCTGGCGTGT
Statistics
Matches: 89, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
26 3 0.03
27 86 0.97
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
TAGATCGCCACAAAGGCTTCCATTTA
Found at i:51309764 original size:51 final size:51
Alignment explanation
Indices: 51309646--51309985 Score: 327
Period size: 51 Copynumber: 6.7 Consensus size: 51
51309636 TATCATTCGA
* * *
51309646 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATC--AGTTTTACAG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTACGG
*
51309695 TTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTACGG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTACGG
* *
51309746 CT-CACGTAGTAGCCTTCACATAGTACTACATACGTGACCAAAGCTTTTCGG
1 -TACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTACGG
* * * * * * ** * *
51309797 TACCCATTGTAGCCTTCACTTAGTACTACACATGTAACCGTAG-ATTACCGA
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTA-CGG
* *
51309848 TACACGTAGTAGCATTCACACAGTACTACACACGTG-CTCAAAGCTTCT-CGG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGAC-CAAAGCTT-TACGG
** * * * *
51309899 TACATATAGTAGCCTTCACTTAGTACTACACATGTGACCATTA--TTTATCGA
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGACCA-AAGCTTTA-CGG
* * *
51309950 TACACGTAGTAGCCTCCACACAGTACTACTCACGTG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTG
51309986 TTCATCGACA
Statistics
Matches: 234, Mismatches: 45, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
49 38 0.16
50 6 0.03
51 185 0.79
52 4 0.02
53 1 0.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (51 bp):
TACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTACGG
Found at i:51309860 original size:102 final size:102
Alignment explanation
Indices: 51309643--51309985 Score: 401
Period size: 102 Copynumber: 3.4 Consensus size: 102
51309633 TTTTATCATT
* * * * *
51309643 CGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATC--AG-TTTTACAGTTCACGTAGT
1 CGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTT-CGGTACACATAGT
* * *
51309705 AGCCTTCACATAGTACTACACACGTGACCAAAGCTTTAC
65 AGCCTTCACTTAGTACTACACATGTGACCATAG-TTTAC
* * * * * *
51309744 GGCT-CACGTAGTAGCCTTCACATAGTACTACATACGTGACCAAAGCTTTTCGGTACCCATTGTA
1 CGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGTA
* * *
51309808 GCCTTCACTTAGTACTACACATGTAACCGTAGATTAC
66 GCCTTCACTTAGTACTACACATGTGACCATAGTTTAC
* * *
51309845 CGATACACGTAGTAGCATTCACACAGTACTACACACGTG-CTCAAAGCTTCTCGGTACATATAGT
1 CGATACACGTAGTAGCCTTCACACAGTACTACACACGTGAC-CAAAGCTTTTCGGTACACATAGT
*
51309909 AGCCTTCACTTAGTACTACACATGTGACCATTA-TTTAT
65 AGCCTTCACTTAGTACTACACATGTGACCA-TAGTTTAC
* *
51309947 CGATACACGTAGTAGCCTCCACACAGTACTACTCACGTG
1 CGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
51309986 TTCATCGACA
Statistics
Matches: 205, Mismatches: 31, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
100 35 0.17
101 9 0.04
102 155 0.76
103 6 0.03
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (102 bp):
CGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGTA
GCCTTCACTTAGTACTACACATGTGACCATAGTTTAC
Found at i:51309962 original size:153 final size:150
Alignment explanation
Indices: 51309641--51309984 Score: 374
Period size: 153 Copynumber: 2.3 Consensus size: 150
51309631 ATTTTTATCA
* * * *
51309641 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAGTTTTACAGTTCACGTAGTA
1 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTAACCAGTATTACAGTACACGTAGTA
* * *
51309706 GCCTTCACATAGTACTACACACGTGACCAAAGCTTTACGGCTCACGTAGTAGCCTTCACATAGTA
66 GCATTCACACAGTACTACACACGTGACCAAAGCTTTACGGCTCACATAGTAGCCTTCACATAGTA
*
51309771 CTACATACGTGACCAAAGCTT
131 CTACACACGTGACCAAA-CTT
* * * * * * *
51309792 TTCGGTACCCATTGTAGCCTTCACTTAGTACTACACATGTAACC-GTAGATTACCGATACACGTA
1 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTAACCAGT--ATTACAG-TACACGTA
*
51309856 GTAGCATTCACACAGTACTACACACGTG-CTCAAAGCTTCT-CGG-TACATATAGTAGCCTTCAC
63 GTAGCATTCACACAGTACTACACACGTGAC-CAAAGCTT-TACGGCT-CACATAGTAGCCTTCAC
* * *
51309918 TTAGTACTACACATGTGACCATTA-TT
125 ATAGTACTACACACGTGACCA-AACTT
* * *
51309944 TATCGATACACGTAGTAGCCTCCACACAGTACTACTCACGT
1 T-TCGATACACGTAGTAGCCTTCACATAGTACTACACACGT
51309985 GTTCATCGAC
Statistics
Matches: 157, Mismatches: 28, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
150 2 0.01
151 36 0.23
152 10 0.06
153 107 0.68
154 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (150 bp):
TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTAACCAGTATTACAGTACACGTAGTA
GCATTCACACAGTACTACACACGTGACCAAAGCTTTACGGCTCACATAGTAGCCTTCACATAGTA
CTACACACGTGACCAAACTT
Found at i:51317337 original size:51 final size:51
Alignment explanation
Indices: 51317155--51317497 Score: 272
Period size: 51 Copynumber: 6.8 Consensus size: 51
51317145 TTTTTATCAT
* * *
51317155 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATC--AG-TTT
1 TCGATACACATAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTA
* * * *
51317203 TAC-AGTTCACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAG-TTT
1 T-CGA-TACACATAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTA
* * * *
51317253 TACGGCT-CACGTAGTAGCCTTCACATAGTACTACATACGTGACCAAAGCTTT
1 T-C-GATACACATAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTA
* * * * * * ** *
51317305 TCAATACCCATTGTAGCCTTCACTTAGTACTACACATGTAACCGTAGATTA
1 TCGATACACATAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTA
* * * *
51317356 CCGATACACATAGTAGCATTCACACAGTACTACACACGTG-CTCAAAACTTA
1 TCGATACACATAGTAGCCTTCACATAGTACTACACACGTGAC-CAAAGCTTA
* * * * *
51317407 TCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATTA-TTTA
1 TCGATACACATAGTAGCCTTCACATAGTACTACACACGTGACCA-AAGCTTA
* * * *
51317458 TCGATACACGTAGTAGCCTCCACACAGTACTACTCACGTG
1 TCGATACACATAGTAGCCTTCACATAGTACTACACACGTG
51317498 TTCATCGACA
Statistics
Matches: 239, Mismatches: 45, Indels: 19
0.79 0.15 0.06
Matches are distributed among these distances:
48 2 0.01
49 39 0.16
50 45 0.19
51 147 0.62
52 6 0.03
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.28
Consensus pattern (51 bp):
TCGATACACATAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTA
Found at i:51317395 original size:102 final size:101
Alignment explanation
Indices: 51317156--51317497 Score: 363
Period size: 102 Copynumber: 3.4 Consensus size: 101
51317146 TTTTATCATT
* * * *
51317156 CGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATC--AG-TTTTACAGTTCACGTAGT
1 CGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTT-CAGTACACATAGT
* * * *
51317218 AGCCTTCACATAGTACTACACACGTGATCAAGTTTTAC
65 AGCCTTCACTTAGTACTACACATGTGACCTAG-TTTAC
* * * * * * *
51317256 GGCT-CACGTAGTAGCCTTCACATAGTACTACATACGTGACCAAAGCTTTTCAATACCCATTGTA
1 CGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTCAGTACACATAGTA
* *
51317320 GCCTTCACTTAGTACTACACATGTAACCGTAGATTAC
66 GCCTTCACTTAGTACTACACATGTGACC-TAGTTTAC
* * * * *
51317357 CGATACACATAGTAGCATTCACACAGTACTACACACGTG-CTCAAAACTTATCGGTACACATAGT
1 CGATACACGTAGTAGCCTTCACACAGTACTACACACGTGAC-CAAAGCTTTTCAGTACACATAGT
*
51317421 AGCCTTCACTTAGTACTACACATGTGACCATTA-TTTAT
65 AGCCTTCACTTAGTACTACACATGTGACC--TAGTTTAC
* *
51317459 CGATACACGTAGTAGCCTCCACACAGTACTACTCACGTG
1 CGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
51317498 TTCATCGACA
Statistics
Matches: 200, Mismatches: 35, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
99 35 0.17
100 2 0.01
101 42 0.21
102 119 0.60
103 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.28
Consensus pattern (101 bp):
CGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTCAGTACACATAGTA
GCCTTCACTTAGTACTACACATGTGACCTAGTTTAC
Found at i:51317474 original size:153 final size:149
Alignment explanation
Indices: 51317154--51317496 Score: 359
Period size: 153 Copynumber: 2.3 Consensus size: 149
51317144 ATTTTTATCA
* * * * *
51317154 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAGTTTTACAGTTCACGTAGTA
1 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTAACCAGTATTACAGTACACATAGTA
* * *** *
51317219 GCCTTCACATAGTACTACACACGTGATCAAGTTTTACGGCTCACGTAGTAGCCTTCACATAGTAC
66 GCATTCACACAGTACTACACACGTGATCAAAACTTACGGCTCACATAGTAGCCTTCACATAGTAC
*
51317284 TACATACGTGACCAAAGCTT
131 TACACACGTGACCAAA-CTT
* * * * * * *
51317304 TTCAATACCCATTGTAGCCTTCACTTAGTACTACACATGTAACC-GTAGATTACCGATACACATA
1 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTAACCAGT--ATTACAG-TACACATA
* *
51317368 GTAGCATTCACACAGTACTACACACGTGCTCAAAACTTATCGG-TACACATAGTAGCCTTCACTT
63 GTAGCATTCACACAGTACTACACACGTGATCAAAACTTA-CGGCT-CACATAGTAGCCTTCACAT
* *
51317432 AGTACTACACATGTGACCATTA-TT
126 AGTACTACACACGTGACCA-AACTT
* * *
51317456 TATCGATACACGTAGTAGCCTCCACACAGTACTACTCACGT
1 T-TCGATACACGTAGTAGCCTTCACATAGTACTACACACGT
51317497 GTTCATCGAC
Statistics
Matches: 154, Mismatches: 32, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
149 2 0.01
150 36 0.23
151 5 0.03
152 43 0.28
153 67 0.44
154 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.28
Consensus pattern (149 bp):
TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTAACCAGTATTACAGTACACATAGTA
GCATTCACACAGTACTACACACGTGATCAAAACTTACGGCTCACATAGTAGCCTTCACATAGTAC
TACACACGTGACCAAACTT
Found at i:51322875 original size:18 final size:18
Alignment explanation
Indices: 51322837--51322876 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
51322827 AACTGCTGCG
*
51322837 GCTGCAATTGCAATTGCT
1 GCTGCAATTGCAAATGCT
* *
51322855 GCTGCAGTTGCAAATGTT
1 GCTGCAATTGCAAATGCT
51322873 GCTG
1 GCTG
51322877 TTGCTGGGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.33
Consensus pattern (18 bp):
GCTGCAATTGCAAATGCT
Found at i:51330631 original size:17 final size:17
Alignment explanation
Indices: 51330609--51330642 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
51330599 AAATTACAAA
51330609 ATCAAATCTTCTAAAAT
1 ATCAAATCTTCTAAAAT
51330626 ATCAAATCTTCTAAAAT
1 ATCAAATCTTCTAAAAT
51330643 TAATTTTCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.18, G:0.00, T:0.35
Consensus pattern (17 bp):
ATCAAATCTTCTAAAAT
Found at i:51337627 original size:49 final size:50
Alignment explanation
Indices: 51337570--51337687 Score: 132
Period size: 54 Copynumber: 2.3 Consensus size: 50
51337560 TGAGCTTGGA
*
51337570 TTTCTTAATGTAAATTAGCT-TAAATGCTAACATGGGTTGCGGA-GTTGTT
1 TTTCTTAATGTAAATTAGCTATAAATGCTAACATGGGTTGC-AATGTTGTT
* *
51337619 TTTCTTAATGTAAATTGGCTGAAGATCAATGCTAACATGGGTTGCAATGTTGTT
1 TTTCTTAATGTAAATTAGCT----ATAAATGCTAACATGGGTTGCAATGTTGTT
* *
51337673 TTTCTTTATGCAAAT
1 TTTCTTAATGTAAAT
51337688 CTCTCTTTCA
Statistics
Matches: 58, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
49 19 0.33
53 1 0.02
54 38 0.66
ACGTcount: A:0.27, C:0.11, G:0.20, T:0.42
Consensus pattern (50 bp):
TTTCTTAATGTAAATTAGCTATAAATGCTAACATGGGTTGCAATGTTGTT
Found at i:51341005 original size:28 final size:27
Alignment explanation
Indices: 51340973--51341027 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
51340963 AAAAATAATT
*
51340973 AAAATTCAA-TATGTTAATAATTTAAGTG
1 AAAATT-AATTAT-TTAATAATTAAAGTG
*
51341001 AAAATTAATTATTTTATAATTAAAGTG
1 AAAATTAATTATTTAATAATTAAAGTG
51341028 TGAATTTCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 15 0.62
28 9 0.38
ACGTcount: A:0.47, C:0.02, G:0.09, T:0.42
Consensus pattern (27 bp):
AAAATTAATTATTTAATAATTAAAGTG
Found at i:51341678 original size:13 final size:13
Alignment explanation
Indices: 51341660--51341685 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51341650 CGAAACCATA
51341660 ATTATAATAATTT
1 ATTATAATAATTT
51341673 ATTATAATAATTT
1 ATTATAATAATTT
51341686 CGATAAACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
ATTATAATAATTT
Found at i:51347290 original size:12 final size:12
Alignment explanation
Indices: 51347254--51347296 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
51347244 TAAACTTTAG
*
51347254 ATTCAATTCTCA
1 ATTCAATTCACA
*
51347266 ATCTCATTTCACA
1 AT-TCAATTCACA
*
51347279 TTTCAATTCACA
1 ATTCAATTCACA
51347291 ATTCAA
1 ATTCAA
51347297 CTTTTCATTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
12 16 0.64
13 9 0.36
ACGTcount: A:0.35, C:0.26, G:0.00, T:0.40
Consensus pattern (12 bp):
ATTCAATTCACA
Found at i:51347529 original size:23 final size:23
Alignment explanation
Indices: 51347459--51347565 Score: 152
Period size: 23 Copynumber: 4.9 Consensus size: 23
51347449 CCTGATCAGT
51347459 ATACGACACAT-AAGTGCCTGA-
1 ATACGACACATAAAGTGCCTGAG
** *
51347480 A-ACGACACACGAGGTGCCT--G
1 ATACGACACATAAAGTGCCTGAG
51347500 ATACGACACATAAAGTGCCTGAG
1 ATACGACACATAAAGTGCCTGAG
51347523 ATACGACACATAAAGTGCCTGAG
1 ATACGACACATAAAGTGCCTGAG
51347546 ATACGACACATAAAGTGCCT
1 ATACGACACATAAAGTGCCT
51347566 AATCGGCAAA
Statistics
Matches: 76, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
20 9 0.12
21 23 0.30
23 44 0.58
ACGTcount: A:0.37, C:0.24, G:0.21, T:0.17
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAG
Found at i:51347951 original size:19 final size:19
Alignment explanation
Indices: 51347891--51347965 Score: 77
Period size: 19 Copynumber: 4.0 Consensus size: 19
51347881 AATCAATACA
51347891 CAATTCACATATTCACATAT
1 CAATTCACA-ATTCACATAT
* *
51347911 C--TTCA-AATCTCATATCT
1 CAATTCACAAT-TCACATAT
51347928 CAATTTC-CAATTCACATAT
1 CAA-TTCACAATTCACATAT
51347947 CAATTCACAATTCACATAT
1 CAATTCACAATTCACATAT
51347966 TTACACATAG
Statistics
Matches: 45, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
16 2 0.04
17 8 0.18
18 7 0.16
19 21 0.47
20 7 0.16
ACGTcount: A:0.37, C:0.27, G:0.00, T:0.36
Consensus pattern (19 bp):
CAATTCACAATTCACATAT
Found at i:51348880 original size:15 final size:15
Alignment explanation
Indices: 51348852--51348893 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
51348842 GTTTCGTCTC
* *
51348852 TTCTATTCTGTTTCTT
1 TTCT-TTCTTTTTCTA
51348868 TTCTTTCTTTTTCTA
1 TTCTTTCTTTTTCTA
51348883 TTCTTTCTTTT
1 TTCTTTCTTTT
51348894 GTTTTATGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 20 0.83
16 4 0.17
ACGTcount: A:0.05, C:0.19, G:0.02, T:0.74
Consensus pattern (15 bp):
TTCTTTCTTTTTCTA
Found at i:51348915 original size:5 final size:5
Alignment explanation
Indices: 51348902--51348970 Score: 61
Period size: 5 Copynumber: 13.4 Consensus size: 5
51348892 TTGTTTTATG
* *
51348902 TATATA TATAA TATAA TATAA TATATT TATAA TATAA TATAA -A-AA CATAA
1 TATA-A TATAA TATAA TATAA TATA-A TATAA TATAA TATAA TATAA TATAA
*
51348952 TCATTAC TATAA TATAA TA
1 T-A-TAA TATAA TATAA TA
51348971 ATATTTTTTT
Statistics
Matches: 53, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
3 2 0.04
4 2 0.04
5 36 0.68
6 10 0.19
7 3 0.06
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:51348932 original size:21 final size:21
Alignment explanation
Indices: 51348902--51348943 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
51348892 TTGTTTTATG
51348902 TATATATATAATATAATATAA
1 TATATATATAATATAATATAA
*
51348923 TATATTTATAATATAATATAA
1 TATATATATAATATAATATAA
51348944 AAACATAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
TATATATATAATATAATATAA
Found at i:51350604 original size:12 final size:12
Alignment explanation
Indices: 51350589--51350652 Score: 56
Period size: 12 Copynumber: 5.3 Consensus size: 12
51350579 GATATCCCAG
51350589 AGAAAATCCAAA
1 AGAAAATCCAAA
* * *
51350601 AGAATATCCCAG
1 AGAAAATCCAAA
*
51350613 AGAAAATCCACA
1 AGAAAATCCAAA
* * *
51350625 AGAATATCCCAG
1 AGAAAATCCAAA
*
51350637 AGAAAATCCACA
1 AGAAAATCCAAA
51350649 AGAA
1 AGAA
51350653 GAATATCGCT
Statistics
Matches: 37, Mismatches: 15, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
12 37 1.00
ACGTcount: A:0.55, C:0.22, G:0.12, T:0.11
Consensus pattern (12 bp):
AGAAAATCCAAA
Found at i:51350612 original size:24 final size:24
Alignment explanation
Indices: 51350580--51350652 Score: 137
Period size: 24 Copynumber: 3.0 Consensus size: 24
51350570 GAGATCGATG
*
51350580 ATATCCCAGAGAAAATCCAAAAGA
1 ATATCCCAGAGAAAATCCACAAGA
51350604 ATATCCCAGAGAAAATCCACAAGA
1 ATATCCCAGAGAAAATCCACAAGA
51350628 ATATCCCAGAGAAAATCCACAAGA
1 ATATCCCAGAGAAAATCCACAAGA
51350652 A
1 A
51350653 GAATATCGCT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.52, C:0.23, G:0.12, T:0.12
Consensus pattern (24 bp):
ATATCCCAGAGAAAATCCACAAGA
Found at i:51350963 original size:13 final size:13
Alignment explanation
Indices: 51350945--51350972 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
51350935 GATAAAAGAG
51350945 CATATAGAATACC
1 CATATAGAATACC
51350958 CATATAGAATACC
1 CATATAGAATACC
51350971 CA
1 CA
51350973 GAAGAGATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.25, G:0.07, T:0.21
Consensus pattern (13 bp):
CATATAGAATACC
Found at i:51351934 original size:22 final size:22
Alignment explanation
Indices: 51351906--51351973 Score: 84
Period size: 22 Copynumber: 3.1 Consensus size: 22
51351896 TATGCACTAT
51351906 TAAACAGAGAGCACTAAAGTGC
1 TAAACAGAGAGCACTAAAGTGC
*
51351928 TATACAGAGAGCAC-AAATGTGC
1 TAAACAGAGAGCACTAAA-GTGC
* * *
51351950 TAAACGGCGAGCACTAACGTGC
1 TAAACAGAGAGCACTAAAGTGC
51351972 TA
1 TA
51351974 GTGATCAGAG
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
21 3 0.08
22 34 0.87
23 2 0.05
ACGTcount: A:0.40, C:0.21, G:0.24, T:0.16
Consensus pattern (22 bp):
TAAACAGAGAGCACTAAAGTGC
Found at i:51351996 original size:25 final size:23
Alignment explanation
Indices: 51351968--51352033 Score: 71
Period size: 22 Copynumber: 2.7 Consensus size: 23
51351958 GAGCACTAAC
51351968 GTGCTAGTGATCAGAGAGCGCCGAT
1 GTGCTA-T-ATCAGAGAGCGCCGAT
* *
51351993 GTGCTA-AACAGAGAGCGCTGAT
1 GTGCTATATCAGAGAGCGCCGAT
51352015 GTGCTAATAATCAGAGAGC
1 GTGCT-AT-ATCAGAGAGC
51352034 ACGCTAAACT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
22 19 0.54
23 1 0.03
25 15 0.43
ACGTcount: A:0.30, C:0.18, G:0.32, T:0.20
Consensus pattern (23 bp):
GTGCTATATCAGAGAGCGCCGAT
Found at i:51351998 original size:47 final size:45
Alignment explanation
Indices: 51351906--51352035 Score: 136
Period size: 47 Copynumber: 2.8 Consensus size: 45
51351896 TATGCACTAT
51351906 TAAACAGAGAGCACTAAAGTGCTATA-CAGAGAGCACAAATGTGC
1 TAAACAGAGAGCACTAAAGTGCTATATCAGAGAGCACAAATGTGC
* * * * **
51351950 TAAACGGCGAGCACTAACGTGCTAGTGATCAGAGAGCGCCGATGTGC
1 TAAACAGAGAGCACTAAAGTGCTA-T-ATCAGAGAGCACAAATGTGC
* * *
51351997 TAAACAGAGAGCGCTGATGTGCTAATAATCAGAGAGCAC
1 TAAACAGAGAGCACTAAAGTGCT-AT-ATCAGAGAGCAC
51352036 GCTAAACTCC
Statistics
Matches: 69, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
44 21 0.30
45 1 0.01
46 1 0.01
47 45 0.65
48 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.27, T:0.17
Consensus pattern (45 bp):
TAAACAGAGAGCACTAAAGTGCTATATCAGAGAGCACAAATGTGC
Found at i:51352007 original size:22 final size:22
Alignment explanation
Indices: 51351979--51352021 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
51351969 TGCTAGTGAT
51351979 CAGAGAGCGCCGATGTGCTAAA
1 CAGAGAGCGCCGATGTGCTAAA
*
51352001 CAGAGAGCGCTGATGTGCTAA
1 CAGAGAGCGCCGATGTGCTAA
51352022 TAATCAGAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.21, G:0.33, T:0.16
Consensus pattern (22 bp):
CAGAGAGCGCCGATGTGCTAAA
Found at i:51353009 original size:17 final size:17
Alignment explanation
Indices: 51352987--51353020 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
51352977 ATGTGGCATG
*
51352987 TACCTAGGTAATGTATA
1 TACCTAAGTAATGTATA
*
51353004 TACCTAAGTGATGTATA
1 TACCTAAGTAATGTATA
51353021 GGGATTAGTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (17 bp):
TACCTAAGTAATGTATA
Found at i:51360522 original size:15 final size:15
Alignment explanation
Indices: 51360504--51360559 Score: 85
Period size: 15 Copynumber: 3.7 Consensus size: 15
51360494 ATTATCGGAG
*
51360504 GTGGTGCATACGTTA
1 GTGGTGGATACGTTA
51360519 GTGGTGGATACGTTA
1 GTGGTGGATACGTTA
* *
51360534 GTGGCGGATATGTTA
1 GTGGTGGATACGTTA
51360549 GTGGTGGATAC
1 GTGGTGGATAC
51360560 ATCGGTGTTG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.20, C:0.09, G:0.39, T:0.32
Consensus pattern (15 bp):
GTGGTGGATACGTTA
Found at i:51362827 original size:21 final size:21
Alignment explanation
Indices: 51362801--51362848 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
51362791 CGACACATAA
51362801 GTGCCTGAAATGACACACGAG
1 GTGCCTGAAATGACACACGAG
* *
51362822 GTGCCTGATATGACGCACGAG
1 GTGCCTGAAATGACACACGAG
51362843 GTGCCT
1 GTGCCT
51362849 AATATATGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.31, T:0.19
Consensus pattern (21 bp):
GTGCCTGAAATGACACACGAG
Found at i:51363985 original size:18 final size:19
Alignment explanation
Indices: 51363962--51363997 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
51363952 ATTATTTTTC
51363962 TAATAAATATCT-TTTAAA
1 TAATAAATATCTATTTAAA
51363980 TAATAAATATCTATTTAA
1 TAATAAATATCTATTTAA
51363998 TGTACAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (19 bp):
TAATAAATATCTATTTAAA
Found at i:51378004 original size:27 final size:26
Alignment explanation
Indices: 51377974--51378086 Score: 100
Period size: 27 Copynumber: 4.2 Consensus size: 26
51377964 ATTTGGAAAA
*
51377974 CTGGGATTTGCCAGTTAATTTGGCGAG
1 CTGGG-TTTACCAGTTAATTTGGCGAG
51378001 CTGGGTTTCACCAGTTAATTTGGCGAG
1 CTGGGTTT-ACCAGTTAATTTGGCGAG
* * * ** *
51378028 CTAGGCTTTGCTAGTTTGTTTGGTGAG
1 CT-GGGTTTACCAGTTAATTTGGCGAG
* * *
51378055 CTAGGGTCTACCAGTGAATTTGGCAAG
1 CT-GGGTTTACCAGTTAATTTGGCGAG
51378082 CTGGG
1 CTGGG
51378087 GTTCACTAGT
Statistics
Matches: 68, Mismatches: 16, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
26 6 0.09
27 57 0.84
28 5 0.07
ACGTcount: A:0.18, C:0.16, G:0.33, T:0.34
Consensus pattern (26 bp):
CTGGGTTTACCAGTTAATTTGGCGAG
Found at i:51378122 original size:54 final size:52
Alignment explanation
Indices: 51377992--51378153 Score: 144
Period size: 54 Copynumber: 3.0 Consensus size: 52
51377982 TGCCAGTTAA
* * * * ** *
51377992 TTTGGCGAGCTGGGTTTCACCAGTTAATTTGGCGAGCTAGGCTTTGCTAGTTTG
1 TTTGGTGAGCTAGG-TTCACCAG-TAATTTGGCAAGCTAGGGTTCACTAGTTGG
* *
51378046 TTTGGTGAGCTAGGGTCTACCAGTGAATTTGGCAAGCTGGGGTTCACTAGTTGG
1 TTTGGTGAGCTAGGTTC-ACCAGT-AATTTGGCAAGCTAGGGTTCACTAGTTGG
* ** * *
51378100 TTTGGTGAGTTATGGTTCACCAGATAGCTTAGCAAGCTAGGGTTCACCAGTTGG
1 TTTGGTGAGCTA-GGTTCACCAG-TAATTTGGCAAGCTAGGGTTCACTAGTTGG
51378154 CTTAGCGAAC
Statistics
Matches: 88, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
53 3 0.03
54 80 0.91
55 5 0.06
ACGTcount: A:0.19, C:0.16, G:0.32, T:0.33
Consensus pattern (52 bp):
TTTGGTGAGCTAGGTTCACCAGTAATTTGGCAAGCTAGGGTTCACTAGTTGG
Found at i:51378177 original size:27 final size:27
Alignment explanation
Indices: 51378077--51378177 Score: 87
Period size: 27 Copynumber: 3.7 Consensus size: 27
51378067 AGTGAATTTG
* * * *
51378077 GCAAGCTGGGGTTCACTAGTTGGTTTG
1 GCAAGCTAGGGTTCACCAGTTGGCTTA
** * * * *
51378104 GTGAGTTATGGTTCACCAGATAGCTTA
1 GCAAGCTAGGGTTCACCAGTTGGCTTA
51378131 GCAAGCTAGGGTTCACCAGTTGGCTTA
1 GCAAGCTAGGGTTCACCAGTTGGCTTA
*
51378158 GCGAA-CTAGGGTTCGCCAGT
1 GC-AAGCTAGGGTTCACCAGT
51378178 ATAAAGCGAA
Statistics
Matches: 56, Mismatches: 17, Indels: 2
0.75 0.23 0.03
Matches are distributed among these distances:
27 54 0.96
28 2 0.04
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.29
Consensus pattern (27 bp):
GCAAGCTAGGGTTCACCAGTTGGCTTA
Found at i:51382803 original size:19 final size:19
Alignment explanation
Indices: 51382781--51382822 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
51382771 TCATTTTTAC
* *
51382781 TTTTGACTTTTTC-TAGAT
1 TTTTTACTTTTTCGTACAT
*
51382799 TTTTTTCTTTTTCGTACAT
1 TTTTTACTTTTTCGTACAT
51382818 TTTTT
1 TTTTT
51382823 TTCTCACCTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.12, C:0.12, G:0.07, T:0.69
Consensus pattern (19 bp):
TTTTTACTTTTTCGTACAT
Found at i:51382823 original size:19 final size:18
Alignment explanation
Indices: 51382787--51382823 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
51382777 TTACTTTTGA
*
51382787 CTTTTTCTAGATTTTTTT
1 CTTTTTCTACATTTTTTT
51382805 CTTTTTCGTACATTTTTTT
1 CTTTTTC-TACATTTTTTT
51382824 TCTCACCTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.11, C:0.14, G:0.05, T:0.70
Consensus pattern (18 bp):
CTTTTTCTACATTTTTTT
Found at i:51383658 original size:23 final size:27
Alignment explanation
Indices: 51383607--51383665 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
51383597 AAAATTCTAC
51383607 GACAAA-AAATATAAATTATAATGTAAA
1 GACAAATAAATATAAATTATAATG-AAA
51383634 GA-AAATAAATATAAA-TATAA-G-AA
1 GACAAATAAATATAAATTATAATGAAA
51383657 GACAAATAA
1 GACAAATAA
51383666 GTGTTGATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
23 4 0.13
24 6 0.20
25 1 0.03
26 8 0.27
27 11 0.37
ACGTcount: A:0.66, C:0.03, G:0.08, T:0.22
Consensus pattern (27 bp):
GACAAATAAATATAAATTATAATGAAA
Found at i:51388048 original size:12 final size:12
Alignment explanation
Indices: 51388031--51388064 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
51388021 ATGTCTCAAA
51388031 AAATGAAAATGG
1 AAATGAAAATGG
51388043 AAATGAAAATGG
1 AAATGAAAATGG
*
51388055 AAATGGAAAT
1 AAATGAAAAT
51388065 TTACAATCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.59, C:0.00, G:0.24, T:0.18
Consensus pattern (12 bp):
AAATGAAAATGG
Found at i:51388053 original size:18 final size:18
Alignment explanation
Indices: 51388030--51388064 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
51388020 CATGTCTCAA
51388030 AAAATGAAAATGGAAATG
1 AAAATGAAAATGGAAATG
*
51388048 AAAATGGAAATGGAAAT
1 AAAATGAAAATGGAAAT
51388065 TTACAATCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.23, T:0.17
Consensus pattern (18 bp):
AAAATGAAAATGGAAATG
Found at i:51396561 original size:13 final size:13
Alignment explanation
Indices: 51396543--51396573 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
51396533 CTGTTTTGTG
51396543 TTTTATTTATTTA
1 TTTTATTTATTTA
51396556 TTTTATTTATTTA
1 TTTTATTTATTTA
51396569 TTTTA
1 TTTTA
51396574 AACTATGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTTATTTATTTA
Found at i:51396777 original size:8 final size:8
Alignment explanation
Indices: 51396764--51396828 Score: 67
Period size: 8 Copynumber: 7.9 Consensus size: 8
51396754 GGTGTTGTTG
51396764 GTTTATTT
1 GTTTATTT
51396772 GTTTATTT
1 GTTTATTT
* *
51396780 GTATGTTT
1 GTTTATTT
51396788 GTTTATTT
1 GTTTATTT
* *
51396796 GTTCAATT
1 GTTTATTT
*
51396804 ATTTCATTT
1 GTTT-ATTT
51396813 CGTTTATTT
1 -GTTTATTT
51396822 GTTTATT
1 GTTTATT
51396829 AAAACGTGAT
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
8 35 0.78
9 7 0.16
10 3 0.07
ACGTcount: A:0.15, C:0.05, G:0.12, T:0.68
Consensus pattern (8 bp):
GTTTATTT
Found at i:51399936 original size:10 final size:10
Alignment explanation
Indices: 51399921--51400062 Score: 84
Period size: 10 Copynumber: 14.3 Consensus size: 10
51399911 GAAGGAGAGG
51399921 GAAAGAAGAA
1 GAAAGAAGAA
51399931 GAAAG-A-AA
1 GAAAGAAGAA
*
51399939 GAAAGAAAAA
1 GAAAGAAGAA
51399949 GAAAGAA-AA
1 GAAAGAAGAA
* *
51399958 GGAAAGGAGAG
1 -GAAAGAAGAA
51399969 GAAAG-A-AA
1 GAAAGAAGAA
51399977 GAAA-AAGAA
1 GAAAGAAGAA
* *
51399986 GGAAAGAATAG
1 -GAAAGAAGAA
*
51399997 GAAAAAAGAAA
1 GAAAGAAG-AA
51400008 GAAA-AAGAA
1 GAAAGAAGAA
51400017 GGAAAGAA-AA
1 -GAAAGAAGAA
*
51400027 GGAAAGGAGAA
1 -GAAAGAAGAA
* *
51400038 GAGAAAAAAAA
1 GA-AAGAAGAA
51400049 TGAAAGAAGAA
1 -GAAAGAAGAA
51400060 GAA
1 GAA
51400063 GAGCGAAGGA
Statistics
Matches: 104, Mismatches: 14, Indels: 28
0.71 0.10 0.19
Matches are distributed among these distances:
8 13 0.12
9 9 0.09
10 56 0.54
11 24 0.23
12 2 0.02
ACGTcount: A:0.70, C:0.00, G:0.29, T:0.01
Consensus pattern (10 bp):
GAAAGAAGAA
Found at i:51399938 original size:4 final size:4
Alignment explanation
Indices: 51399921--51400092 Score: 68
Period size: 4 Copynumber: 44.0 Consensus size: 4
51399911 GAAGGAGAGG
*
51399921 GAAA G-AA G-AA GAAA GAAA GAAA G-AA -AAA GAAA GAAAA GGAAA GGAGAG
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA G-AAA -GAAA -GA-AA
*
51399969 GAAA GAAA G-AA -AAA GAAG GAAA GAATA GGAAA -AAA GAAA G-AA -AAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAA-A -GAAA GAAA GAAA GAAA GAAA
* * *
51400014 GAAG GAAA GAAAA GGAAA G-GA GAAGA GAAA -AAA -AAT GAAA G-AA G-AA
1 GAAA GAAA G-AAA -GAAA GAAA GAA-A GAAA GAAA GAAA GAAA GAAA GAAA
* * *
51400060 GAAGA GCGAA GGAA GGAA -AAA GAAA GAAA GAAA
1 GAA-A G-AAA GAAA GAAA GAAA GAAA GAAA GAAA
51400093 TGTAATTTTT
Statistics
Matches: 134, Mismatches: 12, Indels: 44
0.71 0.06 0.23
Matches are distributed among these distances:
3 36 0.27
4 64 0.48
5 27 0.20
6 7 0.05
ACGTcount: A:0.69, C:0.01, G:0.30, T:0.01
Consensus pattern (4 bp):
GAAA
Found at i:51400008 original size:31 final size:30
Alignment explanation
Indices: 51399920--51400056 Score: 130
Period size: 31 Copynumber: 4.3 Consensus size: 30
51399910 AGAAGGAGAG
*
51399920 GGAAAGAAGAAGAAAGAAAGAAAGAAAAAGAAA
1 GGAAAGAA-AGGAAA-AAAGAAAGAAAAAG-AA
* *
51399953 GAAAAGGAAAGGAGAGGAAAGAAAGAAAAAGAA
1 GGAAA-GAAAGGA-A-AAAAGAAAGAAAAAGAA
51399986 GGAAAGAATAGGAAAAAAGAAAGAAAAAGAA
1 GGAAAGAA-AGGAAAAAAGAAAGAAAAAGAA
** *
51400017 GGAAAGAAAAGGAAAGGAGAAGAGAAAAAAAA
1 GGAAAG-AAAGGAAAAAAGAA-AGAAAAAGAA
*
51400049 TGAAAGAA
1 GGAAAGAA
51400057 GAAGAAGAGC
Statistics
Matches: 89, Mismatches: 9, Indels: 14
0.79 0.08 0.12
Matches are distributed among these distances:
31 34 0.38
32 20 0.22
33 17 0.19
34 18 0.20
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.01
Consensus pattern (30 bp):
GGAAAGAAAGGAAAAAAGAAAGAAAAAGAA
Found at i:51400088 original size:10 final size:10
Alignment explanation
Indices: 51399921--51400088 Score: 76
Period size: 10 Copynumber: 15.8 Consensus size: 10
51399911 GAAGGAGAGG
*
51399921 GAAAGAAGAA
1 GAAAGAAAAA
51399931 GAAAG--AAA
1 GAAAGAAAAA
51399939 GAAAGAAAAA
1 GAAAGAAAAA
*
51399949 GAAAGAAAAG
1 GAAAGAAAAA
51399959 GAAAGGAGAGGAAA
1 GAAA-GA-A--AAA
51399973 GAAAGAAAAA
1 GAAAGAAAAA
*
51399983 G-AAG-GAAA
1 GAAAGAAAAA
51399991 GAATAGGAAAAAA
1 GAA-A-G-AAAAA
51400004 GAAAGAAAAAGAA
1 GAAAG--AAA-AA
*
51400017 GGAAAGAAAAG
1 -GAAAGAAAAA
*
51400028 GAAAGGAGAAGA
1 GAAA-GA-AAAA
51400040 GAAA-AAAAA
1 GAAAGAAAAA
*
51400049 TGAAAGAAGAA
1 -GAAAGAAAAA
** *
51400060 GAAGAGCGAAG
1 GAA-AGAAAAA
*
51400071 GAAGGAAAAA
1 GAAAGAAAAA
51400081 GAAAGAAA
1 GAAAGAAA
51400089 GAAATGTAAT
Statistics
Matches: 120, Mismatches: 19, Indels: 38
0.68 0.11 0.21
Matches are distributed among these distances:
8 11 0.09
9 7 0.06
10 48 0.40
11 17 0.14
12 16 0.13
13 10 0.08
14 11 0.09
ACGTcount: A:0.68, C:0.01, G:0.30, T:0.01
Consensus pattern (10 bp):
GAAAGAAAAA
Found at i:51400092 original size:14 final size:14
Alignment explanation
Indices: 51399921--51400062 Score: 97
Period size: 14 Copynumber: 9.2 Consensus size: 14
51399911 GAAGGAGAGG
51399921 GAAAG-AAGAAGAAA
1 GAAAGAAAGAA-AAA
51399935 GAAAGAAAGAAAAA
1 GAAAGAAAGAAAAA
51399949 GAAAGAAAAGGAAAGGAGA
1 GAAAG-AAA-GAAA--A-A
51399968 GGAAAGAAAGAAAAA
1 -GAAAGAAAGAAAAA
*
51399983 GAAGGAAAGAATAGGAA
1 GAAAGAAAGAA-A--AA
*
51400000 AAAAGAAAGAAAAA
1 GAAAGAAAGAAAAA
* *
51400014 GAAGGAAAGAAAAG
1 GAAAGAAAGAAAAA
51400028 GAAAGGAGAAGAGAAAA
1 GAAA-GA-AAGA-AAAA
* *
51400045 AAAATGAAAGAAGAA
1 GAAA-GAAAGAAAAA
51400060 GAA
1 GAA
51400063 GAGCGAAGGA
Statistics
Matches: 103, Mismatches: 12, Indels: 25
0.74 0.09 0.18
Matches are distributed among these distances:
14 39 0.38
15 17 0.17
16 14 0.14
17 19 0.18
18 5 0.05
19 4 0.04
20 5 0.05
ACGTcount: A:0.70, C:0.00, G:0.29, T:0.01
Consensus pattern (14 bp):
GAAAGAAAGAAAAA
Found at i:51400375 original size:16 final size:15
Alignment explanation
Indices: 51400339--51400369 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
51400329 AAATATGTTC
51400339 AAGAAAACAAAAAAT
1 AAGAAAACAAAAAAT
*
51400354 AAGAAAAGAAAAAAT
1 AAGAAAACAAAAAAT
51400369 A
1 A
51400370 CGGAAATTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.81, C:0.03, G:0.10, T:0.06
Consensus pattern (15 bp):
AAGAAAACAAAAAAT
Found at i:51400637 original size:16 final size:15
Alignment explanation
Indices: 51400611--51400640 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
51400601 GTACTGAAAT
51400611 AATATAAAATAATAA
1 AATATAAAATAATAA
51400626 AATATGAAAATAATA
1 AATAT-AAAATAATA
51400641 TATTTTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (15 bp):
AATATAAAATAATAA
Found at i:51400909 original size:158 final size:154
Alignment explanation
Indices: 51400420--51401196 Score: 770
Period size: 160 Copynumber: 4.9 Consensus size: 154
51400410 AATAGTATAT
*
51400420 TTAATAAATTTCAAACATAATGCACTGAAATAATATAAAATTATAAAAATTAGAATTTATGATAT
1 TTAATAAATTTCAAACATAATGCACTGAAATAATATAAAATTAT-AAAATTAGAAATTATGATAT
* * * *
51400485 TTTTTAAAATAATTAAATGCAGAGAAAAAAATACGAACAAATGGCCAAAGTAAGAGTGTTTTACT
65 TTTTTAAAATAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAGAGTTTTTTACT
*
51400550 AAAATTTTTTAAAAATTCAGAAAT-AA
130 AAATTTTTTTAAAAA-TCA-AAATAAA
* * * *
51400576 TTAATAAAAATATTTCAAACAAAATGTACTGAAATAATATAAAATAATAAAA-TATGAAAATAAT
1 TTAAT---AA-ATTTCAAACATAATGCACTGAAATAATATAAAATTATAAAATTA-G-AAATTAT
* * * * *
51400640 -ATATTTTTATTAAAAGTAATAAAATTCGG-GAAAATAATACGAGCAAAGGGCAGGAA-TAAGAG
60 GATA-TTTT-TTAAAA-TAATAAAATGCGGAGAAAAAAATACGAACAAATGGC-CGAAGTAAGAG
*
51400702 TTTTTTTTACACTAAATTAATTTTTAAAAA--AAACTAAA
121 --TTTTTT--ACTAAATT--TTTTTAAAAATCAAAATAAA
51400740 TTAATAAATTTCAAACATAATGCACTGAAATAA-AGTAAAATTATAAAATTAGAAATTATGATAT
1 TTAATAAATTTCAAACATAATGCACTGAAATAATA-TAAAATTATAAAATTAGAAATTATGATAT
* * * * *
51400804 ATTTTAAAATAATAAAATACGGAGAAAAAAATACGAACAAATGGCTGAAGTAAGAGTGTTTTGCT
65 TTTTTAAAATAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAGAGTTTTTTACT
51400869 -AATTTTTTTAAAAATTCAGAAAT-AA
130 AAATTTTTTTAAAAA-TCA-AAATAAA
* * * * * *
51400894 TTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAATAATAAAATACAAAAATAAT-
1 TTAAT---AA-ATTTCAAACATAATGCACTGAAATAATATAAAATTATAAAAT-TAGAAATTATG
** * * * * *
51400958 ATATTTTAATTGAAGGTAATAAAATTCGG-GAAAATAATACGAGCAAAGGGCGGGAA-TAAGAGT
61 ATATTTT--TT-AAAATAATAAAATGCGGAGAAAAAAATACGAACAAATGGC-CGAAGTAAGAG-
** * * *
51401021 TTTTTTTACCCTAAATTAATTTAAAAAACACACTAAA
121 -TTTTTTA--CTAAATTTTTTTAAAAATCAAAATAAA
*
51401058 TTAATAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATT
1 TTAATAAATTTCAAACATAATGCACTGAAATAATATAAAATTATAAAATTAGAAATTATGATATT
*
51401123 TTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAGAGTTTTTTACTA
66 TTTTAAAATAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAGAGTTTTTTACTA
*
51401188 ACTTTTTTT
131 AATTTTTTT
51401197 TCAACTTGCA
Statistics
Matches: 510, Mismatches: 66, Indels: 92
0.76 0.10 0.14
Matches are distributed among these distances:
151 10 0.02
153 4 0.01
154 19 0.04
155 3 0.01
156 17 0.03
157 35 0.07
158 103 0.20
159 35 0.07
160 155 0.30
161 54 0.11
162 17 0.03
163 10 0.02
164 19 0.04
165 19 0.04
167 10 0.02
ACGTcount: A:0.51, C:0.07, G:0.11, T:0.31
Consensus pattern (154 bp):
TTAATAAATTTCAAACATAATGCACTGAAATAATATAAAATTATAAAATTAGAAATTATGATATT
TTTTAAAATAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAGAGTTTTTTACTA
AATTTTTTTAAAAATCAAAATAAA
Found at i:51400956 original size:318 final size:318
Alignment explanation
Indices: 51400420--51401196 Score: 1299
Period size: 318 Copynumber: 2.4 Consensus size: 318
51400410 AATAGTATAT
*
51400420 TTAATAAATTTCAAACATAATGCACTGAAATAATA-TAAAATTATAAAAATTAGAATTTATGATA
1 TTAATAAATTTCAAACATAATGCACTGAAATAA-AGTAAAATTAT-AAAATTAGAAATTATGATA
* * *
51400484 TTTTTTAAAATAATTAAATGCAGAGAAAAAAATACGAACAAATGGCCAAAGTAAGAGTGTTTTAC
64 TTTTTTAAAATAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTTTTAC
*
51400549 TAAAATTTTTTAAAAATTCAGAAATAATTAATAAAAATATTTCAAACAAAATGTACTGAAATAAT
129 T-AATTTTTTTAAAAATTCAGAAATAATTAATAAAAATATTTCAAACAAAATGTACTGAAATAAT
** *
51400614 ATAAAATAATAAAATATGAAAATAATATATTTTTATTAAAAGTAATAAAATTCGGGAAAATAATA
193 ATAAAATAATAAAATACAAAAATAATATATTTTAATTAAAAGTAATAAAATTCGGGAAAATAATA
51400679 CGAGCAAAGGGCAGGAATAAGAGTTTTTTTTACACTAAATTAATTTTTAAAAAA-A-ACTAAA
258 CGAGCAAAGGGCAGGAATAAGAGTTTTTTTTACACTAAATTAA--TTTAAAAAACACACTAAA
*
51400740 TTAATAAATTTCAAACATAATGCACTGAAATAAAGTAAAATTATAAAATTAGAAATTATGATATA
1 TTAATAAATTTCAAACATAATGCACTGAAATAAAGTAAAATTATAAAATTAGAAATTATGATATT
* * *
51400805 TTTTAAAATAATAAAATACGGAGAAAAAAATACGAACAAATGGCTGAAGTAAGAGTGTTTTGCTA
66 TTTTAAAATAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTTTTACTA
*
51400870 ATTTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATA
131 ATTTTTTTAAAAATTCAGAAATAATTAATAAAAATATTTCAAACAAAATGTACTGAAATAATATA
* *
51400935 AAATAATAAAATACAAAAATAATATATTTTAATTGAAGGTAATAAAATTCGGGAAAATAATACGA
196 AAATAATAAAATACAAAAATAATATATTTTAATTAAAAGTAATAAAATTCGGGAAAATAATACGA
* *
51401000 GCAAAGGGCGGGAATAAGAGTTTTTTTTACCCTAAATTAATTTAAAAAACACACTAAA
261 GCAAAGGGCAGGAATAAGAGTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAA
*
51401058 TTAATAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATT
1 TTAATAAATTTCAAACATAATGCACTGAAATAAAGTAAAATTATAAAATTAGAAATTATGATATT
* *
51401123 TTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAGAGTTTTTTACTA
66 TTTTAAAATAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTTTTACTA
51401188 ACTTTTTTT
131 A-TTTTTTT
51401197 TCAACTTGCA
Statistics
Matches: 429, Mismatches: 24, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
316 9 0.02
317 1 0.00
318 292 0.68
319 85 0.20
320 42 0.10
ACGTcount: A:0.51, C:0.07, G:0.11, T:0.31
Consensus pattern (318 bp):
TTAATAAATTTCAAACATAATGCACTGAAATAAAGTAAAATTATAAAATTAGAAATTATGATATT
TTTTAAAATAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTTTTACTA
ATTTTTTTAAAAATTCAGAAATAATTAATAAAAATATTTCAAACAAAATGTACTGAAATAATATA
AAATAATAAAATACAAAAATAATATATTTTAATTAAAAGTAATAAAATTCGGGAAAATAATACGA
GCAAAGGGCAGGAATAAGAGTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAA
Found at i:51403283 original size:14 final size:14
Alignment explanation
Indices: 51403264--51403296 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
51403254 TTTTTGTATA
51403264 AATTTAATTATTCT
1 AATTTAATTATTCT
51403278 AATTTAATTATTCT
1 AATTTAATTATTCT
51403292 AATTT
1 AATTT
51403297 TAGTTATGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (14 bp):
AATTTAATTATTCT
Found at i:51406427 original size:40 final size:41
Alignment explanation
Indices: 51406336--51406461 Score: 109
Period size: 40 Copynumber: 3.1 Consensus size: 41
51406326 ACTAACACAA
* *
51406336 TAACAATAATAA--TA-GTTTTATACTCAAAATAATACTAAC
1 TAACAATAATAATCTAGGGTTT-TACTAAAAATAATACTAAC
51406375 TAACAATAATAAT-TAGGGTTTTACTAAAAATAATAACTAAC
1 TAACAATAATAATCTAGGGTTTTACTAAAAATAAT-ACTAAC
* * * ** * *
51406416 -CATAATCATAATGCTAGTTTTTTACTAACAATAATACTAAG
1 TAACAATAATAAT-CTAGGGTTTTACTAAAAATAATACTAAC
51406457 TAACA
1 TAACA
51406462 TCTAAACCCT
Statistics
Matches: 70, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
39 12 0.17
40 23 0.33
41 15 0.21
42 20 0.29
ACGTcount: A:0.48, C:0.13, G:0.06, T:0.33
Consensus pattern (41 bp):
TAACAATAATAATCTAGGGTTTTACTAAAAATAATACTAAC
Found at i:51406646 original size:10 final size:10
Alignment explanation
Indices: 51406616--51406654 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
51406606 AAAAAATACT
51406616 TTTTTTTCTC
1 TTTTTTTCTC
*
51406626 TTCTATTTCTC
1 TT-TTTTTCTC
51406637 TTTTTTTCTC
1 TTTTTTTCTC
*
51406647 TCTTTTTC
1 TTTTTTTC
51406655 CGGCACCACC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.03, C:0.23, G:0.00, T:0.74
Consensus pattern (10 bp):
TTTTTTTCTC
Found at i:51406843 original size:27 final size:27
Alignment explanation
Indices: 51406743--51406832 Score: 146
Period size: 27 Copynumber: 3.3 Consensus size: 27
51406733 AGTGGTGCCA
51406743 CCTATGGGAAAGGCACCT-TGGGTGCTG
1 CCTATGGGAAAGGCACCTCT-GGTGCTG
* *
51406770 CCTATGGGAAAGGCACCTTTGGTGCCG
1 CCTATGGGAAAGGCACCTCTGGTGCTG
51406797 CCTATGGGAAAGGCACCTCTGGTGCTG
1 CCTATGGGAAAGGCACCTCTGGTGCTG
51406824 CCTATGGGA
1 CCTATGGGA
51406833 TACCCTCCTC
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
27 58 0.98
28 1 0.02
ACGTcount: A:0.19, C:0.24, G:0.34, T:0.22
Consensus pattern (27 bp):
CCTATGGGAAAGGCACCTCTGGTGCTG
Found at i:51412089 original size:4 final size:4
Alignment explanation
Indices: 51412067--51412113 Score: 67
Period size: 4 Copynumber: 11.5 Consensus size: 4
51412057 AATGGCATAG
* *
51412067 AAAT AATAT AAAC AAAT AAAT AAAT AAAT AAAT AAAT AAAT CAAT AA
1 AAAT AA-AT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
51412114 CATGCAAAGC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
4 34 0.89
5 4 0.11
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:51413041 original size:23 final size:22
Alignment explanation
Indices: 51412998--51413054 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
51412988 AAAGGGTATC
* *
51412998 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
51413019 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
51413042 TACATATCATATC
1 TACAAATCATATC
51413055 CAAGATTGCA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.10
22 17 0.55
23 11 0.35
ACGTcount: A:0.44, C:0.18, G:0.04, T:0.35
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:51413061 original size:19 final size:19
Alignment explanation
Indices: 51413014--51413108 Score: 91
Period size: 19 Copynumber: 4.7 Consensus size: 19
51413004 TTAAATCTCT
*
51413014 AAGATTACAAAATCATATCTTC
1 AAGATTAC-ATATCATATC--C
51413036 TAAGATTACATATCATATCC
1 -AAGATTACATATCATATCC
*
51413056 AAGATTGCACATATCATATCT
1 AAGATT--ACATATCATATCC
* *
51413077 AAGATTGCATATCATATCT
1 AAGATTACATATCATATCC
*
51413096 AAGATTGCATATC
1 AAGATTACATATC
51413109 CTCAAAAATT
Statistics
Matches: 67, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
19 31 0.46
20 1 0.01
21 18 0.27
22 9 0.13
23 8 0.12
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.34
Consensus pattern (19 bp):
AAGATTACATATCATATCC
Found at i:51413069 original size:21 final size:21
Alignment explanation
Indices: 51413027--51413104 Score: 105
Period size: 19 Copynumber: 4.0 Consensus size: 21
51413017 ATTACAAAAT
51413027 CATATC-T-TCTAAGATT--A
1 CATATCATATCTAAGATTGCA
*
51413044 CATATCATATCCAAGATTGCA
1 CATATCATATCTAAGATTGCA
51413065 CATATCATATCTAAGATTG--
1 CATATCATATCTAAGATTGCA
51413084 CATATCATATCTAAGATTGCA
1 CATATCATATCTAAGATTGCA
51413105 TATCCTCAAA
Statistics
Matches: 53, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
17 6 0.11
18 1 0.02
19 27 0.51
21 19 0.36
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.35
Consensus pattern (21 bp):
CATATCATATCTAAGATTGCA
Found at i:51413082 original size:40 final size:38
Alignment explanation
Indices: 51413027--51413104 Score: 120
Period size: 40 Copynumber: 2.0 Consensus size: 38
51413017 ATTACAAAAT
51413027 CATATCTTCTAAGATTACATATCATATCCAAGATTGCA
1 CATATCTTCTAAGATTACATATCATATCCAAGATTGCA
* *
51413065 CATATCATATCTAAGATTGCATATCATATCTAAGATTGCA
1 CATATC-T-TCTAAGATTACATATCATATCCAAGATTGCA
51413105 TATCCTCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
38 6 0.17
39 1 0.03
40 29 0.81
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.35
Consensus pattern (38 bp):
CATATCTTCTAAGATTACATATCATATCCAAGATTGCA
Found at i:51436262 original size:134 final size:132
Alignment explanation
Indices: 51436024--51436288 Score: 424
Period size: 134 Copynumber: 2.0 Consensus size: 132
51436014 CTTACACATC
* * * *
51436024 TTATTGATTATAATGAAAGCATCTTCTTCTAATGACATTTTGATGTCTCAAATTTACTGCAATCT
1 TTATTCATTATAATGAAAGCATCTTCTTCTAATGACATTTTGATGACCCAAATCTACTGCAATCT
* *
51436089 TCAAAGCATGGAGACATGCAATGGTTTCAATCAGCATATGAGTAGAGAAC-AAAAAGAAGAAAAG
66 TCAAAGCATGGAGACATGCAATGGTTTCAATCACCATATGACTAGAGAACTAAAAA-AAGAAAAG
51436153 TTT
130 TTT
51436156 TTATTCATTATAATGAAAGCATCTTCTTCTAATATGACATTTTGATGACCCAAATCTACTGCAAT
1 TTATTCATTATAATGAAAGCATCTTCTTCT-A-ATGACATTTTGATGACCCAAATCTACTGCAAT
* *
51436221 CTTCAAAGTATGGAGATATGCAATGGTTTCAATCACCATATGACTAGAGAACTAAAAAAAGAAAA
64 CTTCAAAGCATGGAGACATGCAATGGTTTCAATCACCATATGACTAGAGAACTAAAAAAAGAAAA
51436286 GTT
129 GTT
51436289 ATGTTGAGAT
Statistics
Matches: 122, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
132 29 0.24
133 1 0.01
134 87 0.71
135 5 0.04
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (132 bp):
TTATTCATTATAATGAAAGCATCTTCTTCTAATGACATTTTGATGACCCAAATCTACTGCAATCT
TCAAAGCATGGAGACATGCAATGGTTTCAATCACCATATGACTAGAGAACTAAAAAAAGAAAAGT
TT
Found at i:51443700 original size:14 final size:14
Alignment explanation
Indices: 51443673--51443718 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
51443663 GATTCCAAAA
51443673 AAAAAGATGAAAAATG
1 AAAAA-ATG-AAAATG
51443689 AAAAAATGAAAATG
1 AAAAAATGAAAATG
* *
51443703 AAAAAGTAAAAATG
1 AAAAAATGAAAATG
51443717 AA
1 AA
51443719 TAGGCTAAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 20 0.71
15 3 0.11
16 5 0.18
ACGTcount: A:0.72, C:0.00, G:0.15, T:0.13
Consensus pattern (14 bp):
AAAAAATGAAAATG
Found at i:51445037 original size:44 final size:44
Alignment explanation
Indices: 51444977--51445494 Score: 166
Period size: 44 Copynumber: 11.1 Consensus size: 44
51444967 TCCCTAAGCA
* * *
51444977 ACAGTGGAGTAGATTGAAGCCAGAAATCTTATCTTCCTGAGATT
1 ACAGAGGAGCAGATTGAAGCTAGAAATCTTATCTTCCTGAGATT
* * *
51445021 ACAGAGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
1 ACAGAGGAGCAGATTGAAGCTAGAAATCTTATCTTCCTGAGATT
* * **
51445065 ACAGTGGAGCGGATT-AAAATA-AAGGATCTTATC-TCTCTGA-AGTT
1 ACAGAGGAGCAGATTGAAGCTAGAA--ATCTTATCTTC-CTGAGA-TT
* * * *
51445109 ACAGTAGAGTAGATCGCATCAAATTGAAGCCAGAAATCTTATCTCCCTAAGATT
1 AC---AGAG--GA--G---CAGATTGAAGCTAGAAATCTTATCTTCCTGAGATT
* * *
51445163 ACAGCGGAGCAGATTGAAGCTAGTAATCCTATC-TCTCTGAGATT
1 ACAGAGGAGCAGATTGAAGCTAGAAATCTTATCTTC-CTGAGATT
* * * **
51445207 ATAGTGGAGCGGATT-AAAATA-AAGGATCTTATCTAT-CTGA-AGTT
1 ACAGAGGAGCAGATTGAAGCTAGAA--ATCTTATCT-TCCTGAGA-TT
*
51445251 ACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATC-TCCTTGAGATT
1 AC---AGAG--GA--G---CAGATTGAAGCTAGAAATCTTATCTTCC-TGAGATT
* * *
51445305 ACAGCGGAGCAGATTGAAGCTAGTAATCCTATC-TCTCTGAGATT
1 ACAGAGGAGCAGATTGAAGCTAGAAATCTTATCTTC-CTGAGATT
* * * **
51445349 ATAGTGGAGCGGATT-AAAATA-AAGGATCTTATCTAT-CTGA-AGTT
1 ACAGAGGAGCAGATTGAAGCTAGAA--ATCTTATCT-TCCTGAGA-TT
* * *
51445393 ACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATTTTATCTCCCTGAGATT
1 AC---AGAG--GA--G---CAGATTGAAGCTAGAAATCTTATCTTCCTGAGATT
* * * * * *
51445447 ACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTTATATT
1 ACAGAGGAGCAGATTGAAGCTAGAAATCTTATCTTCCTGAGATT
51445491 ACAG
1 ACAG
51445495 TGGAACGGAT
Statistics
Matches: 348, Mismatches: 67, Indels: 118
0.65 0.13 0.22
Matches are distributed among these distances:
42 3 0.01
43 17 0.05
44 208 0.60
45 1 0.00
46 2 0.01
47 12 0.03
49 12 0.03
51 12 0.03
52 1 0.00
53 1 0.00
54 60 0.17
55 13 0.04
56 6 0.02
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.28
Consensus pattern (44 bp):
ACAGAGGAGCAGATTGAAGCTAGAAATCTTATCTTCCTGAGATT
Found at i:51445246 original size:142 final size:142
Alignment explanation
Indices: 51444987--51445589 Score: 1026
Period size: 142 Copynumber: 4.2 Consensus size: 142
51444977 ACAGTGGAGT
* *
51444987 AGATTGAAGCCAGAAATCTTATCTTCCTGAGATTACAGAGGAGCAGATTGAAGCTAGTAATCCTA
1 AGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTA
*
51445052 TCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGA
66 TCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTATCTGAAGTTACAGTAGA
51445117 GTAGATCGCATC
131 GTAGATCGCATC
* *
51445129 AAATTGAAGCCAGAAATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTA
1 AGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTA
* *
51445194 TCTCTCTGAGATTATAGTGGAGCGGATTAAAATAAAGGATCTTATCTATCTGAAGTTACAGTAGA
66 TCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTATCTGAAGTTACAGTAGA
51445259 GTAGATCGCATC
131 GTAGATCGCATC
*
51445271 AGATTGAAGCCAGAAATCTTATCTCCTTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTA
1 AGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTA
* *
51445336 TCTCTCTGAGATTATAGTGGAGCGGATTAAAATAAAGGATCTTATCTATCTGAAGTTACAGTAGA
66 TCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTATCTGAAGTTACAGTAGA
51445401 GTAGATCGCATC
131 GTAGATCGCATC
*
51445413 AGATTGAAGCCAGAAATTTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTA
1 AGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTA
* * * * **
51445478 TCTCCCTTATATTACAGTGGAACGGATTAAAATAAATGATCTTATCTCGCTGAAGTTACAGTAGA
66 TCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTATCTGAAGTTACAGTAGA
*
51445543 GTAGATCGTATC
131 GTAGATCGCATC
* *
51445555 AGATTGAAGCCAAAAATCTTATCTTCCTGAGATTA
1 AGATTGAAGCCAGAAATCTTATCTCCCTGAGATTA
51445590 TAGTGGAATA
Statistics
Matches: 437, Mismatches: 24, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
142 437 1.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.29
Consensus pattern (142 bp):
AGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTA
TCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTATCTGAAGTTACAGTAGA
GTAGATCGCATC
Found at i:51445714 original size:50 final size:50
Alignment explanation
Indices: 51445645--51446069 Score: 338
Period size: 50 Copynumber: 8.5 Consensus size: 50
51445635 GTAATGGAAC
*
51445645 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * * * * **
51445695 AGATTAAAGTCACAGCGGTGAATCTTACTTCTCTGGCGA-T-CA-TTGGAGC
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGAC-ATTGCAGTT-AAAA
* * *
51445744 AGATTAAAACCAAAACGGTGAATCTTGCTTCCCCAACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * * * ** ** *
51445794 AGATTAAAGCCATAACAGCGAATCTTAC-TCCCTAGGCGGTGCAGCGGAACA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCC-CGACATTGCAG-TTAAAA
* *
51445845 A-ATTAAAGGCACAACGGTGAATCTTGCTTCCCCAACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * * * * ** *
51445894 AGATTAAAGCTACAACAGCGAATCTTACTGCCCTGACAGTGCAGTGGAAC
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * *
51445944 AGATTAAAGCCACATCGGTGAATCTTGCCTCCCGGTCATTGCAGTTCAAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
** * * * *
51445994 AGATTAAAGTTACAACAGTGAATCATGCTTCCCCGACATTGGAATTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* *
51446044 AGATTAAAGCCACAATGGCGAATCTT
1 AGATTAAAGCCACAACGGTGAATCTT
51446070 ACTTTCCAAA
Statistics
Matches: 277, Mismatches: 89, Indels: 18
0.72 0.23 0.05
Matches are distributed among these distances:
48 3 0.01
49 40 0.14
50 223 0.81
51 11 0.04
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (50 bp):
AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
Found at i:51445884 original size:100 final size:99
Alignment explanation
Indices: 51445639--51446017 Score: 472
Period size: 100 Copynumber: 3.8 Consensus size: 99
51445629 AGCGATGTAA
* *
51445639 TGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAAAG
1 TGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCAACATTGCAGTTAAAAAGATTAAAG
* * * * * * *
51445704 TCACAGCGGTGAATCTTACTTCTCTGGCGAT-CAT
66 CCACAACAGCGAATCTTAC-TCCCTGGCGGTGCAG
* * *
51445738 TGGAGCAGATTAAAACCAAAACGGTGAATCTTGCTTCCCCAACATTGCAGTTAAAAAGATTAAAG
1 TGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCAACATTGCAGTTAAAAAGATTAAAG
*
51445803 CCATAACAGCGAATCTTACTCCCTAGGCGGTGCAG
66 CCACAACAGCGAATCTTACTCCCT-GGCGGTGCAG
* * *
51445838 CGGAACAAATTAAAGGCACAACGGTGAATCTTGCTTCCCCAACATTGCAGTTAAAAAGATTAAAG
1 TGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCAACATTGCAGTTAAAAAGATTAAAG
* * *
51445903 CTACAACAGCGAATCTTACTGCCCTGACAGTGCAG
66 CCACAACAGCGAATCTTACT-CCCTGGCGGTGCAG
* * *** *
51445938 TGGAACAGATTAAAGCCACATCGGTGAATCTTGCCTCCCGGTCATTGCAGTTCAAAAGATTAAAG
1 TGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCAACATTGCAGTTAAAAAGATTAAAG
** *
51446003 TTACAACAGTGAATC
66 CCACAACAGCGAATC
51446018 ATGCTTCCCC
Statistics
Matches: 243, Mismatches: 34, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
98 4 0.02
99 79 0.33
100 156 0.64
101 4 0.02
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.24
Consensus pattern (99 bp):
TGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCAACATTGCAGTTAAAAAGATTAAAG
CCACAACAGCGAATCTTACTCCCTGGCGGTGCAG
Found at i:51453372 original size:17 final size:19
Alignment explanation
Indices: 51453335--51453374 Score: 57
Period size: 17 Copynumber: 2.2 Consensus size: 19
51453325 GATGAACCAT
51453335 AAAATAAGTTAAAGGAATG
1 AAAATAAGTTAAAGGAATG
*
51453354 AAAATAAG-TAAA-TAATG
1 AAAATAAGTTAAAGGAATG
51453371 AAAA
1 AAAA
51453375 GAAAAAATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 8 0.40
18 4 0.20
19 8 0.40
ACGTcount: A:0.65, C:0.00, G:0.15, T:0.20
Consensus pattern (19 bp):
AAAATAAGTTAAAGGAATG
Found at i:51455233 original size:23 final size:23
Alignment explanation
Indices: 51455185--51455233 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
51455175 TCGAGAGATA
*
51455185 GTCAAATTGCATAATGTTCCTAT
1 GTCAAATTGCATAATGTACCTAT
* *
51455208 GTCAAATTGCATAGTGTACCTGT
1 GTCAAATTGCATAATGTACCTAT
51455231 GTC
1 GTC
51455234 TATTATCTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (23 bp):
GTCAAATTGCATAATGTACCTAT
Found at i:51455558 original size:199 final size:199
Alignment explanation
Indices: 51455208--51455798 Score: 1083
Period size: 199 Copynumber: 3.0 Consensus size: 199
51455198 ATGTTCCTAT
*
51455208 GTCAAATTGCATAGTGTACCTGTGTCTATTATCTCTGACCGAGATCCGCGCTTTGCTTCTAGATT
1 GTCAAATTGCATAGTGTACCTGTGTCTATTATCTCTGACCGAGATCCGCGCTTTGCTTCGAGATT
*
51455273 CTAGAAGCATCTACATGAATCTTTAAGTATGAGATTAAATTTCAGCACAACTTTTCATTCTCAGA
66 CTGGAAGCATCTACATGAATCTTTAAGTATGAGATTAAATTTCAGCACAACTTTTCATTCTCAGA
51455338 CAGATGGCCAATCAGAATGGGTATTCAGATATTAGAATATATGTTGTAATCATGTGTAATTGAGA
131 CAGATGGCCAATCAGAATGGGTATTCAGATATTAGAATATATGTTGTAATCATGTGTAATTGAGA
51455403 GATA
196 GATA
51455407 GTCAAATTGCATAGTGTACCTGTGTCTATTATCTCTGACCGAGATCCGCGCTTTGCTTCGAGATT
1 GTCAAATTGCATAGTGTACCTGTGTCTATTATCTCTGACCGAGATCCGCGCTTTGCTTCGAGATT
* * *
51455472 CTGGAAACATTTACATGAATCTTTAAGTATGAGATTAAATTTTAGCACAACTTTTCATTCTCAGA
66 CTGGAAGCATCTACATGAATCTTTAAGTATGAGATTAAATTTCAGCACAACTTTTCATTCTCAGA
* *
51455537 CAGATGGCTAATCATAATGGGTATTCAGATATTAGAATATATGTTGTAATCATGTGTAATTGAGA
131 CAGATGGCCAATCAGAATGGGTATTCAGATATTAGAATATATGTTGTAATCATGTGTAATTGAGA
51455602 GATA
196 GATA
*
51455606 GTCAAATTGCACAGTGTACCTGTGTCTATTATCTCTGACCGAGATCCGCGCTTTGCTTCGAGATT
1 GTCAAATTGCATAGTGTACCTGTGTCTATTATCTCTGACCGAGATCCGCGCTTTGCTTCGAGATT
* * *
51455671 CTGGAAGCACCTACATGAATCTTTAAGTATGAGATTAAATTTCAGCACAACTTTTTATTCTCAGT
66 CTGGAAGCATCTACATGAATCTTTAAGTATGAGATTAAATTTCAGCACAACTTTTCATTCTCAGA
51455736 CAGATGGCCAATCAGAATGGGTATTCAGATATTAGAATATATGTTGTAATCATGTGTAATTGA
131 CAGATGGCCAATCAGAATGGGTATTCAGATATTAGAATATATGTTGTAATCATGTGTAATTGA
51455799 TTTTGAATCA
Statistics
Matches: 376, Mismatches: 16, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
199 376 1.00
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (199 bp):
GTCAAATTGCATAGTGTACCTGTGTCTATTATCTCTGACCGAGATCCGCGCTTTGCTTCGAGATT
CTGGAAGCATCTACATGAATCTTTAAGTATGAGATTAAATTTCAGCACAACTTTTCATTCTCAGA
CAGATGGCCAATCAGAATGGGTATTCAGATATTAGAATATATGTTGTAATCATGTGTAATTGAGA
GATA
Found at i:51456827 original size:22 final size:23
Alignment explanation
Indices: 51456784--51456829 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
51456774 GATGGCTTAT
*
51456784 AATTTTATAAATACTAAGTTATAA
1 AATTTTATAAATAC-AAATTATAA
*
51456808 AATTTTATAATTA-AAATTATAA
1 AATTTTATAAATACAAATTATAA
51456830 TATGGTAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 8 0.40
24 12 0.60
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (23 bp):
AATTTTATAAATACAAATTATAA
Found at i:51474454 original size:14 final size:14
Alignment explanation
Indices: 51474437--51474466 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
51474427 TGAATGTATT
51474437 ATAATATCTTTTCA
1 ATAATATCTTTTCA
51474451 ATAATATCTTTTCA
1 ATAATATCTTTTCA
51474465 AT
1 AT
51474467 GATGTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (14 bp):
ATAATATCTTTTCA
Found at i:51474585 original size:20 final size:20
Alignment explanation
Indices: 51474560--51474598 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
51474550 TAGCCCGATT
51474560 ACAAAAGCCCAAAACCCAAC
1 ACAAAAGCCCAAAACCCAAC
51474580 ACAAAAGCCCAAAACCCAA
1 ACAAAAGCCCAAAACCCAA
51474599 GACTTTCCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.56, C:0.38, G:0.05, T:0.00
Consensus pattern (20 bp):
ACAAAAGCCCAAAACCCAAC
Found at i:51488547 original size:44 final size:44
Alignment explanation
Indices: 51488499--51488687 Score: 127
Period size: 44 Copynumber: 4.3 Consensus size: 44
51488489 AGATAGCAGG
51488499 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATGA-CAAA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGAT-ACCAAA
* * ** *
51488543 TCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCACCAAG
1 TCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGATACCAAA
* * * * * * ** **
51488587 CCTTGTCTTCCTGAGCAGCAGTGGAGCAGGTTGAAGATAGTAGG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATACCAAA
** * *
51488631 TCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGA-AACTAA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATACCAAA
*
51488674 TCATATCTCCCTAA
1 TCTTATCTCCCTAA
51488688 AGTTGTAGTA
Statistics
Matches: 108, Mismatches: 30, Indels: 15
0.71 0.20 0.10
Matches are distributed among these distances:
42 4 0.04
43 22 0.20
44 73 0.68
45 6 0.06
46 3 0.03
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (44 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATACCAAA
Found at i:51488696 original size:44 final size:43
Alignment explanation
Indices: 51488634--51488753 Score: 109
Period size: 44 Copynumber: 2.7 Consensus size: 43
51488624 TAGTAGGTCT
**
51488634 TATCTCCCTAAGCAGTAGTGGAGCAGA-CAGAAGAAACTA-ATCA
1 TATCTCCCTAAGTTGTAGTGGAGCAGATCA-AAGAAA-TAGATCA
* * * * *
51488677 TATCTCCCTAAAGTTGTAGTAGAGCGGATTAAAGTAATAGATCC
1 TATCTCCCT-AAGTTGTAGTGGAGCAGATCAAAGAAATAGATCA
* *
51488721 TATCTCCCTGAAGTTGCAGTGGAGCGGATCAAA
1 TATCTCCCT-AAGTTGTAGTGGAGCAGATCAAA
51488754 AGGATCTCAT
Statistics
Matches: 63, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
43 11 0.17
44 51 0.81
45 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (43 bp):
TATCTCCCTAAGTTGTAGTGGAGCAGATCAAAGAAATAGATCA
Found at i:51489274 original size:20 final size:20
Alignment explanation
Indices: 51489224--51489275 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
51489214 ATTACAAAAT
51489224 CCCAAAACCCAACACAGAAG
1 CCCAAAACCCAACACAGAAG
* * *
51489244 TCTAAAGCCCAACACAGAAG
1 CCCAAAACCCAACACAGAAG
51489264 CCCAAAACCCAA
1 CCCAAAACCCAA
51489276 GACTTTCCCC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.48, C:0.38, G:0.10, T:0.04
Consensus pattern (20 bp):
CCCAAAACCCAACACAGAAG
Found at i:51496571 original size:15 final size:15
Alignment explanation
Indices: 51496551--51496581 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
51496541 ATCAGCTCGG
51496551 TTGGATGACATTTTA
1 TTGGATGACATTTTA
*
51496566 TTGGATGATATTTTA
1 TTGGATGACATTTTA
51496581 T
1 T
51496582 CTATATGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.03, G:0.19, T:0.52
Consensus pattern (15 bp):
TTGGATGACATTTTA
Found at i:51497066 original size:21 final size:21
Alignment explanation
Indices: 51497040--51497081 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
51497030 TAAATATTGA
*
51497040 GTTATCGTACCCATAGGGACT
1 GTTATCGTACCCACAGGGACT
51497061 GTTATCGTACCCACAGGGACT
1 GTTATCGTACCCACAGGGACT
51497082 ATGAAAAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (21 bp):
GTTATCGTACCCACAGGGACT
Found at i:51501499 original size:30 final size:30
Alignment explanation
Indices: 51501463--51501522 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
51501453 AATCAATAAA
* **
51501463 CCATCGTTGTCAAGTGATCGGGGTGGTAGG
1 CCATCGTTGCCAAGCAATCGGGGTGGTAGG
*
51501493 CCATCGTTGCCAGGCAATCGGGGTGGTAGG
1 CCATCGTTGCCAAGCAATCGGGGTGGTAGG
51501523 TTATCATTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.17, C:0.20, G:0.40, T:0.23
Consensus pattern (30 bp):
CCATCGTTGCCAAGCAATCGGGGTGGTAGG
Found at i:51501539 original size:30 final size:30
Alignment explanation
Indices: 51501479--51501551 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
51501469 TTGTCAAGTG
*
51501479 ATCGGGGTGGTAGGCCATCGTTGCCAGGCA
1 ATCGGGGTGGTAGGCCATCATTGCCAGGCA
** * *
51501509 ATCGGGGTGGTAGGTTATCATTGTCGGGCA
1 ATCGGGGTGGTAGGCCATCATTGCCAGGCA
*
51501539 ACCCGGGGTGGTA
1 A-TCGGGGTGGTA
51501552 AGACGTTGTT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
30 26 0.72
31 10 0.28
ACGTcount: A:0.16, C:0.19, G:0.41, T:0.23
Consensus pattern (30 bp):
ATCGGGGTGGTAGGCCATCATTGCCAGGCA
Found at i:51507766 original size:20 final size:19
Alignment explanation
Indices: 51507743--51507787 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
51507733 TGATTTTAAC
51507743 TAATTTTAAATAATTTCATT
1 TAATTTTAAAT-ATTTCATT
* * *
51507763 TAATTTTCAATTTTTCTTT
1 TAATTTTAAATATTTCATT
51507782 TAATTT
1 TAATTT
51507788 AGACTTAGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (19 bp):
TAATTTTAAATATTTCATT
Found at i:51507839 original size:15 final size:15
Alignment explanation
Indices: 51507821--51507863 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 15
51507811 CAGAATTTTT
* *
51507821 TTTAAAATTTTAGTC
1 TTTAATATTTTAGAC
*
51507836 TTTAATTATTTAAGAC
1 TTTAA-TATTTTAGAC
51507852 TTTAATATTTTA
1 TTTAATATTTTA
51507864 TATATGTAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
15 11 0.48
16 12 0.52
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.56
Consensus pattern (15 bp):
TTTAATATTTTAGAC
Found at i:51510068 original size:22 final size:22
Alignment explanation
Indices: 51510043--51510084 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
51510033 GTATTTAGTT
51510043 TATTTCTTGT-TTTCAATCAACA
1 TATTT-TTGTATTTCAATCAACA
*
51510065 TATTTTTTTATTTCAATCAA
1 TATTTTTGTATTTCAATCAA
51510085 TCAATTTACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.29, C:0.14, G:0.02, T:0.55
Consensus pattern (22 bp):
TATTTTTGTATTTCAATCAACA
Found at i:51510436 original size:30 final size:31
Alignment explanation
Indices: 51510402--51510469 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
51510392 TTGTCCAAGA
* * * **
51510402 GTAAATACTAGAAATTTGAGGGATTAA-AGT
1 GTAAATACAAAAAATTTGAAGGACCAATAGT
51510432 GTAAATACAAAAAATTTGAAGGACCAATAGT
1 GTAAATACAAAAAATTTGAAGGACCAATAGT
51510463 GTAAATA
1 GTAAATA
51510470 TTTTAAGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 22 0.69
31 10 0.31
ACGTcount: A:0.49, C:0.06, G:0.19, T:0.26
Consensus pattern (31 bp):
GTAAATACAAAAAATTTGAAGGACCAATAGT
Found at i:51516043 original size:12 final size:13
Alignment explanation
Indices: 51516018--51516048 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
51516008 TGTAAATGTG
51516018 TCATTTCTCATTT
1 TCATTTCTCATTT
51516031 TCATTTC-CATTT
1 TCATTTCTCATTT
51516043 TCATTT
1 TCATTT
51516049 TAAGAAACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.16, C:0.23, G:0.00, T:0.61
Consensus pattern (13 bp):
TCATTTCTCATTT
Found at i:51523315 original size:36 final size:36
Alignment explanation
Indices: 51523270--51523339 Score: 99
Period size: 36 Copynumber: 1.9 Consensus size: 36
51523260 TTAATTGCTA
51523270 ATAATTTTT-ATAAATTATTCTTTTTC-TAAATTTTTT
1 ATAATTTTTAATAAATTA-T-TTTTTCATAAATTTTTT
*
51523306 ATAATTTTTAATAAGTTATTTTTTCATAAATTTT
1 ATAATTTTTAATAAATTATTTTTTCATAAATTTT
51523340 ATACAAATTC
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
35 6 0.19
36 18 0.58
37 7 0.23
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.61
Consensus pattern (36 bp):
ATAATTTTTAATAAATTATTTTTTCATAAATTTTTT
Found at i:51523817 original size:7 final size:7
Alignment explanation
Indices: 51523805--51523850 Score: 92
Period size: 7 Copynumber: 6.6 Consensus size: 7
51523795 CTTGTGCTCT
51523805 TTTAAAA
1 TTTAAAA
51523812 TTTAAAA
1 TTTAAAA
51523819 TTTAAAA
1 TTTAAAA
51523826 TTTAAAA
1 TTTAAAA
51523833 TTTAAAA
1 TTTAAAA
51523840 TTTAAAA
1 TTTAAAA
51523847 TTTA
1 TTTA
51523851 GTCCTTATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 39 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (7 bp):
TTTAAAA
Found at i:51524116 original size:33 final size:33
Alignment explanation
Indices: 51524053--51524116 Score: 78
Period size: 34 Copynumber: 1.9 Consensus size: 33
51524043 TTTTTTCATA
*
51524053 TTTTAAATAAAGAAATATAAAAATTTATAAATT
1 TTTTAAATAAAGAAATATAAAAATTAATAAATT
*
51524086 TTTTAAAATAAA-AAATTATGAAAA-TAATAAA
1 TTTT-AAATAAAGAAA-TATAAAAATTAATAAA
51524117 AACACTTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 13 0.48
34 14 0.52
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (33 bp):
TTTTAAATAAAGAAATATAAAAATTAATAAATT
Found at i:51527166 original size:25 final size:25
Alignment explanation
Indices: 51527137--51527192 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
51527127 TATTTGCTTT
* *
51527137 GAACCGGCTATACTGGTTATTCTAG
1 GAACCAGCTATACTAGTTATTCTAG
* *
51527162 GAACCAGTTGTACTAGTTATTCTAG
1 GAACCAGCTATACTAGTTATTCTAG
51527187 GAACCA
1 GAACCA
51527193 ATTGGTTAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (25 bp):
GAACCAGCTATACTAGTTATTCTAG
Found at i:51530525 original size:2 final size:2
Alignment explanation
Indices: 51530518--51530550 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
51530508 TCCAGGTTTG
51530518 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
51530551 ATCTAGTGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:51533297 original size:6 final size:6
Alignment explanation
Indices: 51533287--51533318 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
51533277 TCCGAATGTT
*
51533287 CAGAAT CAGAAC CAGAAC CAGAAC CAGAAC CA
1 CAGAAC CAGAAC CAGAAC CAGAAC CAGAAC CA
51533319 TAGTCATGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.50, C:0.31, G:0.16, T:0.03
Consensus pattern (6 bp):
CAGAAC
Found at i:51533886 original size:16 final size:16
Alignment explanation
Indices: 51533836--51533887 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
51533826 TGGTTTACTA
*
51533836 TAATAAAATAGAACTG
1 TAATAAAATAGAGCTG
*
51533852 TAATAAAATAGAGCAG
1 TAATAAAATAGAGCTG
* *
51533868 TAATAGAATAGAGTTG
1 TAATAAAATAGAGCTG
51533884 TAAT
1 TAAT
51533888 CAATAATTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.52, C:0.04, G:0.17, T:0.27
Consensus pattern (16 bp):
TAATAAAATAGAGCTG
Found at i:51535842 original size:48 final size:48
Alignment explanation
Indices: 51535771--51535913 Score: 189
Period size: 48 Copynumber: 3.0 Consensus size: 48
51535761 AGGTGTTCCG
* * *
51535771 ATCCCTTTGTTCTTGGCCCCAGCCACTGCTCGGATTCCCATAATCTCT
1 ATCCCTTTGTTCTCGACTCCAGCCACTGCTCGGATTCCCATAATCTCT
* *
51535819 ATCCCTTTGTTCTCGACTCCAGCCATTGCTCAGA-TCCCTATAATCTCT
1 ATCCCTTTGTTCTCGACTCCAGCCACTGCTCGGATTCCC-ATAATCTCT
* ** *
51535867 ATCCCTTTGTTCTCGACTCCAGCCGCCACTTGGATTCCCATAATCTC
1 ATCCCTTTGTTCTCGACTCCAGCCACTGCTCGGATTCCCATAATCTC
51535914 GACTCTTCCA
Statistics
Matches: 82, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
47 4 0.05
48 74 0.90
49 4 0.05
ACGTcount: A:0.17, C:0.37, G:0.13, T:0.34
Consensus pattern (48 bp):
ATCCCTTTGTTCTCGACTCCAGCCACTGCTCGGATTCCCATAATCTCT
Found at i:51545148 original size:23 final size:23
Alignment explanation
Indices: 51545122--51545181 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 23
51545112 CCTTAAGGGA
*
51545122 GATTAACGAGTGGATGGGGATGT
1 GATTAACGAATGGATGGGGATGT
*
51545145 GATTAATGAATGGATGGGGATGT
1 GATTAACGAATGGATGGGGATGT
51545168 GATTAACGAA-GGAT
1 GATTAACGAATGGAT
51545182 TTAGGGTTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
22 4 0.12
23 30 0.88
ACGTcount: A:0.32, C:0.03, G:0.38, T:0.27
Consensus pattern (23 bp):
GATTAACGAATGGATGGGGATGT
Found at i:51545913 original size:19 final size:21
Alignment explanation
Indices: 51545875--51545914 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
51545865 TAAATACAAA
*
51545875 ATTTTTAATTTTTGTTAATTT
1 ATTTTTAATTTGTGTTAATTT
51545896 ATTTTT-ATTTGT-TTAATTT
1 ATTTTTAATTTGTGTTAATTT
51545915 CCTTTTGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 5 0.28
21 6 0.33
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (21 bp):
ATTTTTAATTTGTGTTAATTT
Found at i:51559548 original size:53 final size:53
Alignment explanation
Indices: 51559484--51559628 Score: 229
Period size: 53 Copynumber: 2.7 Consensus size: 53
51559474 ACAGTCGATC
*
51559484 AAATACCATATCATGTAAGACCGTAACTGGTGGGTTATGACATAATAT-GAAA
1 AAATACCATATCGTGTAAGACCGTAACTGGTGGGTTATGACATAATATGGAAA
* *
51559536 AGAATACCATATCGTGTAAGACCGTAACTGGTTGGTTATGACATCATATGGAAA
1 A-AATACCATATCGTGTAAGACCGTAACTGGTGGGTTATGACATAATATGGAAA
* *
51559590 AAAGACCATATCGTGTAAGACCGTAACTAGTGGGTTATG
1 AAATACCATATCGTGTAAGACCGTAACTGGTGGGTTATG
51559629 GCATCAAAAG
Statistics
Matches: 85, Mismatches: 6, Indels: 3
0.90 0.06 0.03
Matches are distributed among these distances:
52 1 0.01
53 79 0.93
54 5 0.06
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.27
Consensus pattern (53 bp):
AAATACCATATCGTGTAAGACCGTAACTGGTGGGTTATGACATAATATGGAAA
Found at i:51559852 original size:28 final size:28
Alignment explanation
Indices: 51559812--51560056 Score: 169
Period size: 29 Copynumber: 8.6 Consensus size: 28
51559802 AAAAATTTGG
*
51559812 AAAGGTAAGCCTTTGTGGCAAACCTATT
1 AAAGGAAAGCCTTTGTGGCAAACCTATT
* * *
51559840 AAAGGAAAACCTTTGAGGCAAAACTCTA-G
1 AAAGGAAAGCCTTTGTGGC-AAAC-CTATT
* **
51559869 AAAGGTAAGCCTTTGTGGTGAACCTATT
1 AAAGGAAAGCCTTTGTGGCAAACCTATT
* ** * *
51559897 AAAGGACAA-CCTTTGTGACAAAAATCTGG
1 AAAGGA-AAGCCTTTGTGGCAAACCTAT-T
* * *
51559926 AAAGGTAAGCCTTTATGGCAAACCTCTT
1 AAAGGAAAGCCTTTGTGGCAAACCTATT
*
51559954 AAA-GAACA-CCTTTGTGGCAAATCT-TT
1 AAAGGAA-AGCCTTTGTGGCAAACCTATT
* * *
51559980 GAAAGGAAATGCCTTTGTGGCGATCTCTATC
1 -AAAGGAAA-GCCTTTGTGGCAAAC-CTATT
* * *
51560011 CAAGGAAAGCCTCTGTGGCAAACTCTA-G
1 AAAGGAAAGCCTTTGTGGCAAAC-CTATT
51560039 AAAGGAAAGCCTTTGTGG
1 AAAGGAAAGCCTTTGTGG
51560057 AAATCTCCGT
Statistics
Matches: 166, Mismatches: 38, Indels: 26
0.72 0.17 0.11
Matches are distributed among these distances:
26 2 0.01
27 23 0.14
28 61 0.37
29 67 0.40
30 12 0.07
31 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.25
Consensus pattern (28 bp):
AAAGGAAAGCCTTTGTGGCAAACCTATT
Found at i:51559853 original size:57 final size:56
Alignment explanation
Indices: 51559792--51560056 Score: 241
Period size: 57 Copynumber: 4.7 Consensus size: 56
51559782 TTTAAGGATG
*
51559792 CCTTTGTGCAAAAAATTTGGAAAGGTAAGCCTTTGTGGCAAACCTATTAAAGGAAAA
1 CCTTTGTGC-AAAAATCTGGAAAGGTAAGCCTTTGTGGCAAACCTATTAAAGGAAAA
* * * ** *
51559849 CCTTTGAGGCAAAACTCTAGAAAGGTAAGCCTTTGTGGTGAACCTATTAAAGGACAA
1 CCTTTG-TGCAAAAATCTGGAAAGGTAAGCCTTTGTGGCAAACCTATTAAAGGAAAA
* * *
51559906 CCTTTGTGACAAAAATCTGGAAAGGTAAGCCTTTATGGCAAACCTCTTAAA-GAACA
1 CCTTTGTG-CAAAAATCTGGAAAGGTAAGCCTTTGTGGCAAACCTATTAAAGGAAAA
* * * * ** *
51559962 CCTTTGTGGC--AAATCTTTGAAAGGAAATGCCTTTGTGGCGATCTCTATCCAAGGAAAG
1 CCTTTGT-GCAAAAATC-TGGAAAGGTAA-GCCTTTGTGGCAAAC-CTATTAAAGGAAAA
* * * *
51560020 CCTCTGTGGC-AAACTCTAGAAAGGAAAGCCTTTGTGG
1 CCTTTGT-GCAAAAATCTGGAAAGGTAAGCCTTTGTGG
51560057 AAATCTCCGT
Statistics
Matches: 171, Mismatches: 29, Indels: 16
0.79 0.13 0.07
Matches are distributed among these distances:
54 5 0.03
55 9 0.05
56 24 0.14
57 105 0.61
58 24 0.14
59 4 0.02
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (56 bp):
CCTTTGTGCAAAAATCTGGAAAGGTAAGCCTTTGTGGCAAACCTATTAAAGGAAAA
Found at i:51559931 original size:114 final size:113
Alignment explanation
Indices: 51559791--51560056 Score: 306
Period size: 114 Copynumber: 2.3 Consensus size: 113
51559781 GTTTAAGGAT
*
51559791 GCCTTTGTGCAAAAAATTTGGAAAGGTAAGCCTTTGTGGCAAACCTATTAAAGGAAAACCTTTGA
1 GCCTTTGTGC-AAAAATCTGGAAAGGTAAGCCTTTGTGGCAAACCTATTAAA-GAAAACCTTTGA
* * *
51559856 GGCAAAACTCTAGAAAGGTAA-GCCTTTGTGGTGAAC-CTATTAAAGGACAA
64 GGCAAAACT-TAGAAAGGAAATGCCTTTGTGGCGAACTCTATCAAAGGA-AA
* * * *
51559906 -CCTTTGTGACAAAAATCTGGAAAGGTAAGCCTTTATGGCAAACCTCTTAAAGAACACCTTTGTG
1 GCCTTTGTG-CAAAAATCTGGAAAGGTAAGCCTTTGTGGCAAACCTATTAAAGAAAACCTTTGAG
* * * *
51559970 GCAAATCTTTGAAAGGAAATGCCTTTGTGGCGATCTCTATCCAAGGAAA
65 GCAAAACTTAGAAAGGAAATGCCTTTGTGGCGAACTCTATCAAAGGAAA
* * * *
51560019 GCCTCTGTGGC-AAACTCTAGAAAGGAAAGCCTTTGTGG
1 GCCTTTGT-GCAAAAATCTGGAAAGGTAAGCCTTTGTGG
51560057 AAATCTCCGT
Statistics
Matches: 129, Mismatches: 17, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
112 9 0.07
113 56 0.43
114 62 0.48
115 2 0.02
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (113 bp):
GCCTTTGTGCAAAAATCTGGAAAGGTAAGCCTTTGTGGCAAACCTATTAAAGAAAACCTTTGAGG
CAAAACTTAGAAAGGAAATGCCTTTGTGGCGAACTCTATCAAAGGAAA
Found at i:51564463 original size:139 final size:139
Alignment explanation
Indices: 51564209--51564491 Score: 541
Period size: 139 Copynumber: 2.0 Consensus size: 139
51564199 GTAATCAACT
51564209 TCAG-ACTTAGGGTTTTTCTGAGAAAATTAATTATTACCTAGACAGTATTACCTCTCGACATCTA
1 TCAGTACTTAGGGTTTTTCTGAGAAAATTAATTATTACCTAGACAGTATTACCTCTCGACATCTA
51564273 CTGCCTAACTAATCAACCAGTACACGCTTACCTCTAGGCCTCACTTTCCTGACTGGGATAAATAC
66 CTGCCTAACTAATCAACCAGTACACGCTTACCTCTAGGCCTCACTTTCCTGACTGGGATAAATAC
51564338 ACGATTTAC
131 ACGATTTAC
* *
51564347 TCAGTACTTAGGGTTTTTCTGAGAAAATTATTTATTACCTAGACAGTATTACCTCTCGGCATCTA
1 TCAGTACTTAGGGTTTTTCTGAGAAAATTAATTATTACCTAGACAGTATTACCTCTCGACATCTA
51564412 CTGCCTAACTAATCAACCAGTACACGCTTACCTCTAGGCCTCACTTTCCTGACTGGGATAAATAC
66 CTGCCTAACTAATCAACCAGTACACGCTTACCTCTAGGCCTCACTTTCCTGACTGGGATAAATAC
51564477 ACGATTTAC
131 ACGATTTAC
51564486 TCAGTA
1 TCAGTA
51564492 TCCTTGTATC
Statistics
Matches: 142, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
138 4 0.03
139 138 0.97
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (139 bp):
TCAGTACTTAGGGTTTTTCTGAGAAAATTAATTATTACCTAGACAGTATTACCTCTCGACATCTA
CTGCCTAACTAATCAACCAGTACACGCTTACCTCTAGGCCTCACTTTCCTGACTGGGATAAATAC
ACGATTTAC
Found at i:51568390 original size:14 final size:14
Alignment explanation
Indices: 51568373--51568407 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
51568363 CAAGAAAATT
51568373 AATTTTAAATAAAA
1 AATTTTAAATAAAA
**
51568387 AATTAAAAATAAAA
1 AATTTTAAATAAAA
51568401 AATTTTA
1 AATTTTA
51568408 TGCATTTTTC
Statistics
Matches: 17, Mismatches: 4, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTTTAAATAAAA
Found at i:51572937 original size:4 final size:4
Alignment explanation
Indices: 51572928--51572989 Score: 124
Period size: 4 Copynumber: 15.5 Consensus size: 4
51572918 CATCTATATC
51572928 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
51572976 TACA TACA TACA TA
1 TACA TACA TACA TA
51572990 TATTACTGTA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 58 1.00
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (4 bp):
TACA
Found at i:51582080 original size:50 final size:48
Alignment explanation
Indices: 51582024--51582358 Score: 303
Period size: 50 Copynumber: 6.7 Consensus size: 48
51582014 GATGGCCACG
51582024 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCTGAACGATGGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTACC-GAA-GATGGGTCGCA
* ** * **
51582074 TGTGTAGTATTATGTGCAGGCTACTATGCATACCGAATA-GCTTCGATCA
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAAGATGGGTCG--CA
* * *
51582123 TGTATGTAGTACTATGTGTAGGCTACTACGTGTACCTGAATGATGGGTCCCA
1 TG--TGTAGTACTATGTGCAGGCTACTATGTGTACC-GAA-GATGGGTCGCA
* * * * *
51582175 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAATAGCTTCGATCACA
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCG-A-AG-ATGGGTCGCA
* *
51582226 TGTGTAATACTATGTGCAGGCTACTACGTGTACCGGAATGATGGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTACC-GAA-GATGGGTCGCA
* * * * * * *
51582276 TGAGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTACC-GA-AG-ATGGGTCGCA
*
51582327 TGTGTAGTACTATGTGCAGGCTACTACGTGTA
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTA
51582359 TCAGATGGAA
Statistics
Matches: 230, Mismatches: 41, Indels: 27
0.77 0.14 0.09
Matches are distributed among these distances:
47 4 0.02
48 1 0.00
49 8 0.03
50 103 0.45
51 102 0.44
52 8 0.03
53 1 0.00
54 3 0.01
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (48 bp):
TGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAAGATGGGTCGCA
Found at i:51582170 original size:101 final size:101
Alignment explanation
Indices: 51582020--51582358 Score: 561
Period size: 101 Copynumber: 3.4 Consensus size: 101
51582010 AAGTGATGGC
* * *
51582020 CACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCTGAACGATGGGTCGCATGTGTAGTATT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCTGAATGATGGGTCGCATGTGTAGTACT
*
51582085 ATGTGCAGGCTACTATGCATACCGAATAGCTTCGAT
66 ATGTGCAGGCTACTATGCGTACCGAATAGCTTCGAT
* * * *
51582121 CATGTATGTAGTACTATGTGTAGGCTACTACGTGTACCTGAATGATGGGTCCCATGTGTAGTACT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCTGAATGATGGGTCGCATGTGTAGTACT
51582186 ATGTGCAGGCTACTATGCGTACCGAATAGCTTCGAT
66 ATGTGCAGGCTACTATGCGTACCGAATAGCTTCGAT
* * * *
51582222 CACATGTGTAATACTATGTGCAGGCTACTACGTGTACCGGAATGATGGGTCGCATGAGTAGTACT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCTGAATGATGGGTCGCATGTGTAGTACT
*
51582287 ATGTGCAGGCTACTATGCGTACCGGATAGCTTCGAT
66 ATGTGCAGGCTACTATGCGTACCGAATAGCTTCGAT
51582323 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA
51582359 TCAGATGGAA
Statistics
Matches: 219, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
101 219 1.00
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (101 bp):
CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCTGAATGATGGGTCGCATGTGTAGTACT
ATGTGCAGGCTACTATGCGTACCGAATAGCTTCGAT
Found at i:51582385 original size:51 final size:49
Alignment explanation
Indices: 51582027--51582412 Score: 265
Period size: 51 Copynumber: 7.7 Consensus size: 49
51582017 GGCCACGTGT
* * * * * *
51582027 GTAGTACTATGTGCAGGCTACTATGTGTACCTGAACGATGGGTCGCATGT
1 GTAGTACTATGTGCAGGCTACTACGTGTACC-GGATGATCGGTCACATGA
* * ** * * *
51582077 GTAGTATTATGTGCAGGCTACTATGCATACCGAAT-AGC-TTCGATCATGTA
1 GTAGTACTATGTGCAGGCTACTACGTGTACCGGATGATCGGTC-A-CATG-A
* * * * *
51582127 TGTAGTACTATGTGTAGGCTACTACGTGTACCTGAATGATGGGTCCCATGT
1 -GTAGTACTATGTGCAGGCTACTACGTGTACC-GGATGATCGGTCACATGA
* * * * * *
51582178 GTAGTACTATGTGCAGGCTACTATGCGTACCGAATAGCTTCGATCACATGT
1 GTAGTACTATGTGCAGGCTACTACGTGTACCGGAT-G-ATCGGTCACATGA
* * *
51582229 GTAATACTATGTGCAGGCTACTACGTGTACCGGAATGATGGGTCGCATGA
1 GTAGTACTATGTGCAGGCTACTACGTGTACCGG-ATGATCGGTCACATGA
* * * * * *
51582279 GTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGATCACGTGT
1 GTAGTACTATGTGCAGGCTACTACGTGTACCGGAT-G-ATCGGTCACATGA
* * *
51582330 GTAGTACTATGTGCAGGCTACTACGTGTATCAGATGGAAAT-GGTCACCTGA
1 GTAGTACTATGTGCAGGCTACTACGTGTACCGGAT-G--ATCGGTCACATGA
* * * *
51582381 GTAGTACTATGTGTAGACTACTATGTGAACCG
1 GTAGTACTATGTGCAGGCTACTACGTGTACCG
51582413 AGTATCATTG
Statistics
Matches: 263, Mismatches: 60, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
47 2 0.01
48 1 0.00
49 13 0.05
50 96 0.37
51 137 0.52
52 11 0.04
53 1 0.00
54 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.30
Consensus pattern (49 bp):
GTAGTACTATGTGCAGGCTACTACGTGTACCGGATGATCGGTCACATGA
Found at i:51582523 original size:33 final size:34
Alignment explanation
Indices: 51582476--51582608 Score: 126
Period size: 33 Copynumber: 3.7 Consensus size: 34
51582466 ATATAAAGGG
*
51582476 GGTTTCTAAGTGCTGATTCC-CCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCACCGAATCATTGGT
* * *
51582509 GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCCACCGAATC----AT-TG---GT
*
51582551 GGTTGCTAAGTGCTGATTCC-CCGAATCACTGGT
1 GGTTGCTAAGTGCTGATTCCACCGAATCATTGGT
*
51582584 GGTTGCTAAGTGCTGAATCCACCGA
1 GGTTGCTAAGTGCTGATTCCACCGA
51582609 TAACGGATAA
Statistics
Matches: 81, Mismatches: 9, Indels: 19
0.74 0.08 0.17
Matches are distributed among these distances:
33 38 0.47
34 10 0.12
36 2 0.02
37 1 0.01
38 2 0.02
39 2 0.02
41 6 0.07
42 20 0.25
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (34 bp):
GGTTGCTAAGTGCTGATTCCACCGAATCATTGGT
Found at i:51582584 original size:75 final size:75
Alignment explanation
Indices: 51582430--51582607 Score: 252
Period size: 75 Copynumber: 2.3 Consensus size: 75
51582420 TTGATTATAA
* * * *
51582430 GGTGGTTGCTAAATGTTGATTCCACCGTATCTTTGAATATAAAGGGGGTTTCTAAGTGCTGATTC
1 GGTGGTTGCTAAGTGCTGA-TCCACCGTATCTTTAAATATAAAGGGGGTTGCTAAGTGCTGATTC
*
51582495 CCCGAATCATT
65 CCCGAATCACT
*
51582506 GGTGGTTGCTAAGTGCTGATCCCACCGTATC-TTAAATGTGAAA-GGGGTTGCTAAGTGCTGATT
1 GGTGGTTGCTAAGTGCTGAT-CCACCGTATCTTTAAATAT-AAAGGGGGTTGCTAAGTGCTGATT
51582569 CCCCGAATCACT
64 CCCCGAATCACT
51582581 GGTGGTTGCTAAGTGCTGAATCCACCG
1 GGTGGTTGCTAAGTGCTG-ATCCACCG
51582608 ATAACGGATA
Statistics
Matches: 93, Mismatches: 6, Indels: 7
0.88 0.06 0.07
Matches are distributed among these distances:
75 61 0.66
76 32 0.34
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.31
Consensus pattern (75 bp):
GGTGGTTGCTAAGTGCTGATCCACCGTATCTTTAAATATAAAGGGGGTTGCTAAGTGCTGATTCC
CCGAATCACT
Found at i:51583458 original size:49 final size:49
Alignment explanation
Indices: 51583380--51583478 Score: 135
Period size: 49 Copynumber: 2.0 Consensus size: 49
51583370 ATGAGTACTT
* * * *
51583380 TCGGTAAGTGATATGTGATTCCGTATAAGACCATGGCTGGGCTATGGCA
1 TCGGTAAGTGATATGTGATTACATATAAGACCATAGCTGGACTATGGCA
* * *
51583429 TCGGTATGTGATATGTGATTACATGTAAGACCATAGTTGGACTATGGCA
1 TCGGTAAGTGATATGTGATTACATATAAGACCATAGCTGGACTATGGCA
51583478 T
1 T
51583479 TGAGAAAACG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.31
Consensus pattern (49 bp):
TCGGTAAGTGATATGTGATTACATATAAGACCATAGCTGGACTATGGCA
Found at i:51586223 original size:15 final size:15
Alignment explanation
Indices: 51586203--51586233 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
51586193 TATGTGAGTC
51586203 TAGTTTCAGATAAAA
1 TAGTTTCAGATAAAA
51586218 TAGTTTCAGATAAAA
1 TAGTTTCAGATAAAA
51586233 T
1 T
51586234 TAACGGATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.06, G:0.13, T:0.35
Consensus pattern (15 bp):
TAGTTTCAGATAAAA
Found at i:51590062 original size:87 final size:87
Alignment explanation
Indices: 51589894--51590061 Score: 232
Period size: 87 Copynumber: 1.9 Consensus size: 87
51589884 TTTTGCAATC
* * ** *
51589894 ATTGTGTATTCAAACTTTCAAAATGCATAAAAAAAGTTCTCAAAATTTTTCAAAAAAAGTAATTA
1 ATTGGGTACTCAAACTTTCAAAATGCATAAAAAAAGCCCTCAAAATTTTTCAAAAAAAGCAATTA
51589959 AGCCCTTAATTTTTTTTATTCA
66 AGCCCTTAATTTTTTTTATTCA
* * *
51589981 ATTGGGTACTCAAACTTTCAACATGCATAAAAAAAAGCCCTC-AATTTTTTC-AAAAATGCAATT
1 ATTGGGTACTCAAACTTTCAAAATGCAT-AAAAAAAGCCCTCAAAATTTTTCAAAAAAAGCAATT
*
51590044 AAGCCCTTGATTTTTTTT
65 AAGCCCTTAATTTTTTTT
51590062 TTATTGCACT
Statistics
Matches: 71, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
86 27 0.38
87 33 0.46
88 11 0.15
ACGTcount: A:0.39, C:0.15, G:0.08, T:0.38
Consensus pattern (87 bp):
ATTGGGTACTCAAACTTTCAAAATGCATAAAAAAAGCCCTCAAAATTTTTCAAAAAAAGCAATTA
AGCCCTTAATTTTTTTTATTCA
Found at i:51590256 original size:10 final size:10
Alignment explanation
Indices: 51590243--51590329 Score: 54
Period size: 10 Copynumber: 8.8 Consensus size: 10
51590233 ATAAAAGTTA
51590243 TAAAAAATAT
1 TAAAAAATAT
***
51590253 TAAATTTTAT
1 TAAAAAATAT
51590263 TAAAAAATAT
1 TAAAAAATAT
51590273 T-AAAAATAT
1 TAAAAAATAT
***
51590282 TAAATTTTAT
1 TAAAAAATAT
* *
51590292 TAAAAATTAG
1 TAAAAAATAT
*
51590302 AAAAAAAT-T
1 TAAAAAATAT
51590311 TATAAAAATCA-
1 TA-AAAAAT-AT
51590322 TAAAAAAT
1 TAAAAAAT
51590330 TATAAAATGT
Statistics
Matches: 57, Mismatches: 16, Indels: 8
0.70 0.20 0.10
Matches are distributed among these distances:
9 10 0.18
10 45 0.79
11 2 0.04
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.36
Consensus pattern (10 bp):
TAAAAAATAT
Found at i:51590267 original size:29 final size:29
Alignment explanation
Indices: 51590234--51590307 Score: 112
Period size: 29 Copynumber: 2.6 Consensus size: 29
51590224 TAAAAATCAA
*
51590234 TAAAAGTTATAAAAAATATTAAATTTTAT
1 TAAAAATTATAAAAAATATTAAATTTTAT
* *
51590263 TAAAAAATATTAAAAATATTAAATTTTAT
1 TAAAAATTATAAAAAATATTAAATTTTAT
*
51590292 TAAAAATTAGAAAAAA
1 TAAAAATTATAAAAAA
51590308 ATTTATAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (29 bp):
TAAAAATTATAAAAAATATTAAATTTTAT
Done.