Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 167 of 207
Found at i:51590334 original size:10 final size:10
Alignment explanation
Indices: 51590235--51590336 Score: 50
Period size: 10 Copynumber: 10.3 Consensus size: 10
51590225 AAAAATCAAT
*
51590235 AAAAGTTATA
1 AAAAATTATA
*
51590245 AAAAA-TATT
1 AAAAATTATA
**
51590254 AAATTTTATTA
1 AAAAATTA-TA
*
51590265 AAAAA-TATT
1 AAAAATTATA
*
51590274 AAAAA-TATT
1 AAAAATTATA
** *
51590283 AAATTTTATT
1 AAAAATTATA
*
51590293 AAAAATTAGAA
1 AAAAATTA-TA
51590304 AAAAATT-TA
1 AAAAATTATA
*
51590313 TAAAAATCATA
1 -AAAAATTATA
51590324 AAAAATTATA
1 AAAAATTATA
51590334 AAA
1 AAA
51590337 TGTATCAAAG
Statistics
Matches: 69, Mismatches: 17, Indels: 12
0.70 0.17 0.12
Matches are distributed among these distances:
9 20 0.29
10 36 0.52
11 13 0.19
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.34
Consensus pattern (10 bp):
AAAAATTATA
Found at i:51590640 original size:19 final size:19
Alignment explanation
Indices: 51590618--51590654 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
51590608 CTATATTTCT
51590618 ATATATTTTATAATTTTTA
1 ATATATTTTATAATTTTTA
*
51590637 ATATTTTTTATAATTTTT
1 ATATATTTTATAATTTTT
51590655 TATTAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
ATATATTTTATAATTTTTA
Found at i:51595000 original size:31 final size:27
Alignment explanation
Indices: 51594965--51595026 Score: 72
Period size: 26 Copynumber: 2.2 Consensus size: 27
51594955 GTATTTCACA
*
51594965 ATTTAATTATAAATTATTCTATTTATATTTT
1 ATTTAA-TATAAA-TATT-TATTTAT-TTAT
51594996 ATTT-ATATAAATATTTATTTATTTAT
1 ATTTAATATAAATATTTATTTATTTAT
51595022 ATTTA
1 ATTTA
51595027 TCTATTTTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
26 7 0.24
27 7 0.24
28 4 0.14
29 6 0.21
30 1 0.03
31 4 0.14
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (27 bp):
ATTTAATATAAATATTTATTTATTTAT
Found at i:51595159 original size:14 final size:15
Alignment explanation
Indices: 51595142--51595171 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
51595132 AAGAAATTTC
51595142 TTTTTGAAAA-TAAA
1 TTTTTGAAAATTAAA
51595156 TTTTTGAAAATTAAA
1 TTTTTGAAAATTAAA
51595171 T
1 T
51595172 AAATTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (15 bp):
TTTTTGAAAATTAAA
Found at i:51595347 original size:84 final size:83
Alignment explanation
Indices: 51595258--51595495 Score: 323
Period size: 84 Copynumber: 2.8 Consensus size: 83
51595248 TATTAAAACT
51595258 AATAAAATCTGTTTTGGGATTTAGTTCCGCCGTTTAACAAGATTTTATTTGATTTTATTTTGTTT
1 AATAAAATCTGTTTTGGGATTTA-TTCCGCCGTTTAACAAGATTTTATTTGATTTTATTTTGTTT
*
51595323 CTAAATTAGAATTAAATTA
65 CCAAATTAGAATTAAATTA
* * * *
51595342 AATAAAATCTATTTTGGGATTTATTCCAGTCGTTTAACAATATTTTATTTTATTTTATTTTGTTT
1 AATAAAATCTGTTTTGGGATTTATTCC-GCCGTTTAACAAGATTTTATTTGATTTTATTTTGTTT
*
51595407 CCAAATTCGAATTAAATTA
65 CCAAATTAGAATTAAATTA
* ** * * * * *
51595426 AACAAAATCTGTTTCAGGATTTATTCCCACCGTTTAACAAGATTTTATTCGATATTGTCTTGTTT
1 AATAAAATCTGTTTTGGGATTTATT-CCGCCGTTTAACAAGATTTTATTTGATTTTATTTTGTTT
51595491 CCAAA
65 CCAAA
51595496 CAAAGACGTA
Statistics
Matches: 134, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
83 4 0.03
84 128 0.96
85 2 0.01
ACGTcount: A:0.31, C:0.12, G:0.11, T:0.46
Consensus pattern (83 bp):
AATAAAATCTGTTTTGGGATTTATTCCGCCGTTTAACAAGATTTTATTTGATTTTATTTTGTTTC
CAAATTAGAATTAAATTA
Found at i:51602357 original size:42 final size:43
Alignment explanation
Indices: 51602254--51602367 Score: 124
Period size: 43 Copynumber: 2.7 Consensus size: 43
51602244 AAAAGCTCGT
* * * **
51602254 ACAATACCAACGTCCCAGAC-GTGGTCTTACATGTAATCAAATA
1 ACAATGCCAATGTCCCAAACAG-GGTCTTACACATAATCAAATA
* *
51602297 ACAATGCCATTGTCCCAAACAGGGTCTTACACATAATCATAT-
1 ACAATGCCAATGTCCCAAACAGGGTCTTACACATAATCAAATA
* *
51602339 ACGATGCCAATGTCCCAAACATGGTCTTA
1 ACAATGCCAATGTCCCAAACAGGGTCTTA
51602368 TACGTAAATC
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
42 26 0.43
43 33 0.55
44 1 0.02
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.25
Consensus pattern (43 bp):
ACAATGCCAATGTCCCAAACAGGGTCTTACACATAATCAAATA
Found at i:51633751 original size:27 final size:27
Alignment explanation
Indices: 51633721--51634062 Score: 341
Period size: 27 Copynumber: 12.7 Consensus size: 27
51633711 GTGAGGTCAA
51633721 TAAAATGACCGAAATACCCCCGTAGGG
1 TAAAATGACCGAAATACCCCCGTAGGG
** *
51633748 TAAAATGACCGAAATACCCCTATATGG
1 TAAAATGACCGAAATACCCCCGTAGGG
* * *
51633775 TAAAATGACCGAAATACCCTCATATGG
1 TAAAATGACCGAAATACCCCCGTAGGG
* * * *
51633802 TAAAATGATCGAAATACTCCTGTAGGA
1 TAAAATGACCGAAATACCCCCGTAGGG
* ** *
51633829 TAAAATGATCGAAATACCCCTATAAGG
1 TAAAATGACCGAAATACCCCCGTAGGG
* * *
51633856 TAAAATGATCC-AAACACCCCCGTAAGA
1 TAAAATGA-CCGAAATACCCCCGTAGGG
** * *
51633883 TAAAATGATTGAAATACCACCGTAAGG
1 TAAAATGACCGAAATACCCCCGTAGGG
* *
51633910 TAAAATGACCGAAA-ACCCTCTTAGGG
1 TAAAATGACCGAAATACCCCCGTAGGG
*
51633936 TAAAATGATCGAAATACCCCCGTAGGG
1 TAAAATGACCGAAATACCCCCGTAGGG
* *
51633963 TAAAATGATCGAAATACCCCCATAGGG
1 TAAAATGACCGAAATACCCCCGTAGGG
* * *
51633990 TAAAATAACCAAAATA-CCCCAT-GGG
1 TAAAATGACCGAAATACCCCCGTAGGG
* *
51634015 TTAAAATGACTGAAATACTCCCGTAGGG
1 -TAAAATGACCGAAATACCCCCGTAGGG
* *
51634043 TGAAATGATCGAAATACCCC
1 TAAAATGACCGAAATACCCC
51634063 TGTCGAAACC
Statistics
Matches: 261, Mismatches: 48, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
25 3 0.01
26 40 0.15
27 214 0.82
28 4 0.02
ACGTcount: A:0.41, C:0.22, G:0.17, T:0.20
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCCCGTAGGG
Found at i:51633970 original size:80 final size:81
Alignment explanation
Indices: 51633721--51634062 Score: 399
Period size: 80 Copynumber: 4.2 Consensus size: 81
51633711 GTGAGGTCAA
* * * *
51633721 TAAAATGACCGAAATACCCCCGTAGGGTAAAATGACCGAAATACCCCTATATGGTAAAATGACCG
1 TAAAATGATCGAAATACCCCCGTAAGGTAAAATGACCGAAATACCCCTATAGGGTAAAATGATCG
* * *
51633786 AAATACCCTCATATGG
66 AAATACCCCCGTAGGG
* * * *
51633802 TAAAATGATCGAAATACTCCTGT-AGGATAAAATGATCGAAATACCCCTATAAGGTAAAATGATC
1 TAAAATGATCGAAATACCCCCGTAAGG-TAAAATGACCGAAATACCCCTATAGGGTAAAATGATC
* * * *
51633866 CAAACACCCCCGTAAGA
65 GAAATACCCCCGTAGGG
* *
51633883 TAAAATGATTGAAATACCACCGTAAGGTAAAATGACCGAAA-ACCCTCT-TAGGGTAAAATGATC
1 TAAAATGATCGAAATACCCCCGTAAGGTAAAATGACCGAAATACCC-CTATAGGGTAAAATGATC
51633946 GAAATACCCCCGTAGGG
65 GAAATACCCCCGTAGGG
* * * *
51633963 TAAAATGATCGAAATACCCCCATAGGGTAAAATAACCAAAATACCCC-AT-GGGTTAAAATGA-C
1 TAAAATGATCGAAATACCCCCGTAAGGTAAAATGACCGAAATACCCCTATAGGG-TAAAATGATC
*
51634025 TGAAATACTCCCGTAGGG
65 -GAAATACCCCCGTAGGG
*
51634043 TGAAATGATCGAAATACCCC
1 TAAAATGATCGAAATACCCC
51634063 TGTCGAAACC
Statistics
Matches: 223, Mismatches: 31, Indels: 15
0.83 0.12 0.06
Matches are distributed among these distances:
79 4 0.02
80 113 0.51
81 103 0.46
82 3 0.01
ACGTcount: A:0.41, C:0.22, G:0.17, T:0.20
Consensus pattern (81 bp):
TAAAATGATCGAAATACCCCCGTAAGGTAAAATGACCGAAATACCCCTATAGGGTAAAATGATCG
AAATACCCCCGTAGGG
Found at i:51637248 original size:49 final size:48
Alignment explanation
Indices: 51637175--51637348 Score: 152
Period size: 50 Copynumber: 3.5 Consensus size: 48
51637165 TTGGAAAGTA
51637175 AGATTCGCCATTGTGGCTTTAATCTTTTTACTGCAATGTTGGGGAAGC
1 AGATTCGCCATTGTGGCTTTAATCTTTTTACTGCAATGTTGGGGAAGC
* ** ** * *
51637223 ATGATTCGCTATTGTGGCTTTAATCTATTCCACTGCACCGCCTGGGG-AGTA
1 A-GATTCGCCATTGTGGCTTTAATCT-TTTTACTGCAATG-TTGGGGAAG-C
* ** * *
51637274 AAATTCGCTGTTGTAGCTTTAATTTTTTTAACTGCAATGTTGGGGAAGCC
1 AGATTCGCCATTGTGGCTTTAATCTTTTT-ACTGCAATGTTGGGGAAG-C
* * *
51637324 AGATTCACCGTTATGGCTTTAATCT
1 AGATTCGCCATTGTGGCTTTAATCT
51637349 GTTCCACTGC
Statistics
Matches: 96, Mismatches: 24, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
48 1 0.01
49 30 0.31
50 59 0.61
51 6 0.06
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.37
Consensus pattern (48 bp):
AGATTCGCCATTGTGGCTTTAATCTTTTTACTGCAATGTTGGGGAAGC
Found at i:51637343 original size:100 final size:100
Alignment explanation
Indices: 51637172--51638098 Score: 1363
Period size: 100 Copynumber: 9.3 Consensus size: 100
51637162 CCTTTGGAAA
*** * ** * * * **
51637172 GTAAGATTCGCCATTGTGGCTTTAATCTTTTT-ACTGCAATGTTGGGGAAGCATGATTCGCTATT
1 GTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATGTCAGGGAGGCAAGATTCACCGTT
*
51637236 GTGGCTTTAATCTATTCCACTGCACCGCCTGGG-G
66 GTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
* * * ** * *
51637270 AGTAAAATTCGCTGTTGTAGCTTTAATTTTTTTAACTGCAATGTTGGGGAAGCCAGATTCACCGT
1 -GTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATGTCAGGGAGGCAAGATTCACCGT
* *
51637335 TATGGCTTTAATCTGTTCCACTGCACCGCCTGAGAG
65 TGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
* * *
51637371 GTAAGACTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCAGGGAGGCAAGATTCACCGTT
1 GTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATGTCAGGGAGGCAAGATTCACCGTT
* *
51637436 ATGGCTATAATCTGTTCCACTGCACCGCCTGGGAG
66 GTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
* * * *
51637471 GTAAGATTCGTTACTGTAGGTTTAATCTTTTTAACTGCAATGCCAGGGAGGCAAGATTCACCGTT
1 GTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATGTCAGGGAGGCAAGATTCACCGTT
* *
51637536 GTGGCTTTAATCTGTTCCACTGCACAGCCTGAGAG
66 GTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
*
51637571 GTAAGATTCACTGCTGTAGCTTTAATCTTTTTAACTGCAATGTCAGGGAGGCAAGATTCACCGTT
1 GTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATGTCAGGGAGGCAAGATTCACCGTT
51637636 GTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
66 GTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
* * *
51637671 GTAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCAGGGAGGCAAGATTCACCATT
1 GTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATGTCAGGGAGGCAAGATTCACCGTT
* * * *
51637736 GTGGCTTTAATCTATTACACTGCACTGCCTGAGAG
66 GTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
* * *
51637771 GTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTACAATGTCAGGGAGGTAAGATTCACAGTT
1 GTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATGTCAGGGAGGCAAGATTCACCGTT
*
51637836 GTGGCTTTAATCTGTTCCACTGCATCGCCTGGGAG
66 GTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
51637871 GTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATGTCAGGGAGGCAAGATTCACCGTT
1 GTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATGTCAGGGAGGCAAGATTCACCGTT
* **
51637936 GTGACTTTAATCTGTTCCACTGCACTACCTGGGAG
66 GTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
* *
51637971 GTAAGATTCACTGCTGTAGCTTTAATATTTTTAACTGCAATGTCAGGGAGGCAAGATTCACCGTT
1 GTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATGTCAGGGAGGCAAGATTCACCGTT
*
51638036 GTGGCTTTAATCTATTCCACTGCACCGCCTGGGAG
66 GTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
**
51638071 GTAAGATTCGCTATTGTAGCTTTAATCT
1 GTAAGATTCGCTGCTGTAGCTTTAATCT
51638099 GCAATGTCAA
Statistics
Matches: 751, Mismatches: 75, Indels: 3
0.91 0.09 0.00
Matches are distributed among these distances:
99 27 0.04
100 723 0.96
101 1 0.00
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.33
Consensus pattern (100 bp):
GTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATGTCAGGGAGGCAAGATTCACCGTT
GTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
Found at i:51640347 original size:20 final size:21
Alignment explanation
Indices: 51640319--51640357 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
51640309 TCCATCTAGA
*
51640319 TTTTTTTCTTT-TTTTTCTTC
1 TTTTCTTCTTTCTTTTTCTTC
51640339 TTTTCTTCTTTCTTTTTCT
1 TTTTCTTCTTTCTTTTTCT
51640358 CTCATTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (21 bp):
TTTTCTTCTTTCTTTTTCTTC
Found at i:51640386 original size:15 final size:14
Alignment explanation
Indices: 51640362--51640396 Score: 61
Period size: 15 Copynumber: 2.4 Consensus size: 14
51640352 TTTTCTCTCA
51640362 TTTTTTATTTTGAT
1 TTTTTTATTTTGAT
51640376 TTTTTTGATTTTGAT
1 TTTTTT-ATTTTGAT
51640391 TTTTTT
1 TTTTTT
51640397 TGAAAGGATC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 6 0.30
15 14 0.70
ACGTcount: A:0.11, C:0.00, G:0.09, T:0.80
Consensus pattern (14 bp):
TTTTTTATTTTGAT
Found at i:51646743 original size:27 final size:27
Alignment explanation
Indices: 51646649--51646741 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
51646639 TACAACTCTA
* *
51646649 ATAGGGTAAAATAACCTAAATAACCCC
1 ATAGGGTAAAATAACCAAAATACCCCC
* *
51646676 ATAAGGTAAAATAACCAAAATACCCCT
1 ATAGGGTAAAATAACCAAAATACCCCC
* * * *
51646703 GTAGGGTAAAATGATCGAAATACCCCC
1 ATAGGGTAAAATAACCAAAATACCCCC
51646730 ATAGGGTAAAAT
1 ATAGGGTAAAAT
51646742 GACTGTTATA
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.46, C:0.19, G:0.15, T:0.19
Consensus pattern (27 bp):
ATAGGGTAAAATAACCAAAATACCCCC
Found at i:51646752 original size:27 final size:26
Alignment explanation
Indices: 51646695--51646777 Score: 71
Period size: 27 Copynumber: 3.1 Consensus size: 26
51646685 AATAACCAAA
* **
51646695 ATACCCCTGTAGGGTAAAATGA-TCGAA
1 ATACCCC-CTAGGGTAAAATGACT-GTT
51646722 ATACCCCCATAGGGTAAAATGACTGTT
1 ATACCCCC-TAGGGTAAAATGACTGTT
*
51646749 ATA-CCCCTAGGAGATTAAATGACTGTT
1 ATACCCCCTAGG-G-TAAAATGACTGTT
51646776 AT
1 AT
51646778 GGCCTTATGT
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
25 4 0.08
26 5 0.10
27 38 0.79
28 1 0.02
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (26 bp):
ATACCCCCTAGGGTAAAATGACTGTT
Found at i:51646947 original size:26 final size:26
Alignment explanation
Indices: 51646918--51646972 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
51646908 TCTATCACAT
*
51646918 ATACTATTACTGCCAGCTTTGCTGCG
1 ATACTATTACTGCCAGCTTTGCTGAG
*
51646944 ATACTATTACTGGCAGCTTTGCTGAG
1 ATACTATTACTGCCAGCTTTGCTGAG
51646970 ATA
1 ATA
51646973 TTGGTGTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.35
Consensus pattern (26 bp):
ATACTATTACTGCCAGCTTTGCTGAG
Found at i:51654091 original size:27 final size:27
Alignment explanation
Indices: 51654061--51654419 Score: 429
Period size: 27 Copynumber: 13.3 Consensus size: 27
51654051 GTGAGGTCAA
*
51654061 TAAAATGACCAAAATACCCTCATAGGG
1 TAAAATGACCGAAATACCCTCATAGGG
*
51654088 TAAAATGACCGAAATACACC-CATAGGA
1 TAAAATGACCGAAATAC-CCTCATAGGG
* * * *
51654115 TAAAACGATCGAAATACCCCCGTAGGG
1 TAAAATGACCGAAATACCCTCATAGGG
* *
51654142 TAAAATAATCGAAATACCCTCATAGGG
1 TAAAATGACCGAAATACCCTCATAGGG
*
51654169 TAAAATGATCGAAATACCCTCATAGGG
1 TAAAATGACCGAAATACCCTCATAGGG
*
51654196 TAAAATAACCGAAATACCCTCATAGGG
1 TAAAATGACCGAAATACCCTCATAGGG
*
51654223 TAAAATGATCGAAATACCC-CTATAGGG
1 TAAAATGACCGAAATACCCTC-ATAGGG
* *
51654250 TAAAATGATCGAAATACCC-CTGTAGGG
1 TAAAATGACCGAAATACCCTC-ATAGGG
* *
51654277 TAAAATGACCGAAATACTCC-CGTAGGT
1 TAAAATGACCGAAATAC-CCTCATAGGG
* *
51654304 TAAAATAACCGAAATACCCTCATAAGG
1 TAAAATGACCGAAATACCCTCATAGGG
* * *
51654331 TAAAAAGACCAAAATACCCTCGTAGGG
1 TAAAATGACCGAAATACCCTCATAGGG
* *
51654358 TAAAATAATCGAAATACCCTCATAGGG
1 TAAAATGACCGAAATACCCTCATAGGG
* * *
51654385 TAAAATGACTGAAATACCCCCATAAGG
1 TAAAATGACCGAAATACCCTCATAGGG
51654412 TAAAATGA
1 TAAAATGA
51654420 TTGTTATACC
Statistics
Matches: 290, Mismatches: 37, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
26 5 0.02
27 280 0.97
28 5 0.02
ACGTcount: A:0.43, C:0.21, G:0.17, T:0.19
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCTCATAGGG
Found at i:51662420 original size:22 final size:21
Alignment explanation
Indices: 51662388--51662432 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
51662378 ATTTGAAATG
51662388 TTTTATAATATTACTTTTTAAAA
1 TTTTATAATATT--TTTTTAAAA
51662411 TTTTA-AATATTTTTTTAAAA
1 TTTTATAATATTTTTTTAAAA
51662431 TT
1 TT
51662433 ATTTTTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 11 0.50
22 6 0.27
23 5 0.23
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (21 bp):
TTTTATAATATTTTTTTAAAA
Found at i:51662468 original size:24 final size:22
Alignment explanation
Indices: 51662423--51662469 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 22
51662413 TTAAATATTT
**
51662423 TTTTAAAATTATTTTTTTTAAA
1 TTTTAAAATTATTTTTAATAAA
51662445 TTTTAAATATATATTTTTAATAAA
1 TTTTAAA-AT-TATTTTTAATAAA
51662469 T
1 T
51662470 AAAACATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 7 0.33
23 2 0.10
24 12 0.57
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
TTTTAAAATTATTTTTAATAAA
Found at i:51662552 original size:30 final size:31
Alignment explanation
Indices: 51662513--51662574 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
51662503 CAAATTTATT
51662513 ATTTATTTTGTAA-TATTTTAAATATTTTTA
1 ATTTATTTTGTAATTATTTTAAATATTTTTA
* *
51662543 ATTTGTTTTGTAATTTTTTTAAATATTTTTA
1 ATTTATTTTGTAATTATTTTAAATATTTTTA
51662574 A
1 A
51662575 AATATATTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 12 0.41
31 17 0.59
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.65
Consensus pattern (31 bp):
ATTTATTTTGTAATTATTTTAAATATTTTTA
Found at i:51662676 original size:30 final size:28
Alignment explanation
Indices: 51662655--51662721 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 28
51662645 TAAATATTTT
51662655 TTAA-TTTTAAATATAATTTTTATAAATTA
1 TTAATTTTTAAA-ATAATTTTTA-AAATTA
*
51662684 TTAATTTTTAAAATTATTTTTAAAGA-TA
1 TTAATTTTTAAAATAATTTTTAAA-ATTA
51662712 TTCAATTTTT
1 TT-AATTTTT
51662722 TTTAAAATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
28 6 0.18
29 21 0.62
30 7 0.21
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.57
Consensus pattern (28 bp):
TTAATTTTTAAAATAATTTTTAAAATTA
Found at i:51662697 original size:16 final size:17
Alignment explanation
Indices: 51662668--51662701 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
51662658 ATTTTAAATA
51662668 TAATTTTTATAAATTAT
1 TAATTTTTATAAATTAT
51662685 TAATTTTTA-AAATTAT
1 TAATTTTTATAAATTAT
51662701 T
1 T
51662702 TTTAAAGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TAATTTTTATAAATTAT
Found at i:51662718 original size:29 final size:29
Alignment explanation
Indices: 51662659--51662746 Score: 83
Period size: 32 Copynumber: 2.9 Consensus size: 29
51662649 TATTTTTTAA
*
51662659 TTTTAAATATAATTTTTATAAATTATTAA-T
1 TTTTAAA-ATTATTTTTA-AAATTATTAATT
51662689 TTTTAAAATTATTTTTAAAGA-TATTCAATTTT
1 TTTTAAAATTATTTTTAAA-ATTATT-AA--TT
*
51662721 TTTTAAAATTATATTTAAAATT-TTAA
1 TTTTAAAATTATTTTTAAAATTATTAA
51662747 AAATTAATAT
Statistics
Matches: 50, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
28 6 0.12
29 12 0.24
30 9 0.18
31 3 0.06
32 20 0.40
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (29 bp):
TTTTAAAATTATTTTTAAAATTATTAATT
Found at i:51672254 original size:15 final size:15
Alignment explanation
Indices: 51672234--51672264 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
51672224 CCAACCTTCA
51672234 AATTTTACCTCAATT
1 AATTTTACCTCAATT
51672249 AATTTTACCTCAATT
1 AATTTTACCTCAATT
51672264 A
1 A
51672265 TACATAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.45
Consensus pattern (15 bp):
AATTTTACCTCAATT
Found at i:51674520 original size:11 final size:11
Alignment explanation
Indices: 51674504--51674530 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
51674494 TAGAAATTAG
51674504 TTTGTGAAACT
1 TTTGTGAAACT
51674515 TTTGTGAAACT
1 TTTGTGAAACT
51674526 TTTGT
1 TTTGT
51674531 ATTGATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:51676059 original size:93 final size:92
Alignment explanation
Indices: 51675927--51676121 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
51675917 TTGATTTTAG
* *
51675927 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTA-TATAATTA
1 TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTA-AATTA
* *
51675991 TATTTAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
51676019 TAAATTCATATAAGAAAATTTTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TAAATTCATATAAGAAAA-TTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTA
51676084 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
51676112 CAAATTCATA
1 TAAATTCATA
51676122 AACTATAATC
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 17 0.18
93 71 0.76
94 5 0.05
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:51676179 original size:17 final size:17
Alignment explanation
Indices: 51676154--51676187 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
51676144 ATAATTTTAA
*
51676154 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
51676171 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
51676188 TTAATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:51676189 original size:15 final size:16
Alignment explanation
Indices: 51676154--51676192 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
51676144 ATAATTTTAA
*
51676154 ATTTTATTAAATCATAT
1 ATTTAATTAAATCA-AT
51676171 ATTTAATTAAATC-AT
1 ATTTAATTAAATCAAT
51676186 ATTTAAT
1 ATTTAAT
51676193 ATTAATTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.43
17 12 0.57
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (16 bp):
ATTTAATTAAATCAAT
Found at i:51676196 original size:17 final size:18
Alignment explanation
Indices: 51676158--51676197 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
51676148 TTTTAAATTT
*
51676158 TATTAAATCATATATTTA
1 TATTAAATCATATATTAA
51676176 -ATTAAATCATAT-TTAA
1 TATTAAATCATATATTAA
51676192 TATTAA
1 TATTAA
51676198 TTATTTGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (18 bp):
TATTAAATCATATATTAA
Found at i:51676311 original size:15 final size:15
Alignment explanation
Indices: 51676276--51676410 Score: 70
Period size: 15 Copynumber: 8.9 Consensus size: 15
51676266 TTAAGAATTT
*
51676276 TATTAAATTAT-ATA
1 TATTTAATTATAATA
51676290 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
51676304 TATTTAATAATAAT-
1 TATTTAATTATAATA
51676318 TATGTTAATT-T-ATA
1 TAT-TTAATTATAATA
* *
51676332 T-TTTACAGTATCATA
1 TATTTA-ATTATAATA
*
51676347 TATTATGATTTGAGTAAATTCA
1 TATT-T-AATT-A-T-AA-T-A
*
51676369 TATTAAATTAT-ATA
1 TATTTAATTATAATA
51676383 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
51676397 TATTTAATAATAAT
1 TATTTAATTATAAT
51676411 TATGTTTAAA
Statistics
Matches: 93, Mismatches: 11, Indels: 33
0.68 0.08 0.24
Matches are distributed among these distances:
12 3 0.03
13 21 0.23
14 17 0.18
15 32 0.34
16 3 0.03
17 2 0.02
18 3 0.03
19 2 0.02
20 4 0.04
21 1 0.01
22 5 0.05
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:51676318 original size:119 final size:118
Alignment explanation
Indices: 51676153--51676370 Score: 343
Period size: 119 Copynumber: 1.8 Consensus size: 118
51676143 AATAATTTTA
* *
51676153 AATTTTATTAAATCATATATTTAATTAAATCATATTTAATATTAATTAT-TTGAAATTT-TCTTT
1 AATTTTATTAAATCATATATTTAATTAAATCATATTTAATAATAATTATGTT--AATTTATATTT
*
51676216 TATAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATTTTATTATTAAG
64 TACAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATTTTATTATTAAG
*
51676271 AATTTTATTAAATTATATATTTTAATTATAAT-ATATTTAATAATAATTATGTTAATTTATATTT
1 AATTTTATTAAATCATATA-TTTAATTA-AATCATATTTAATAATAATTATGTTAATTTATATTT
51676335 TACAGTATCATATATTATGATTTGAGTAAATTCATA
64 TACAGTATCATATATTATGATTTGAGTAAATTCATA
51676371 TTAAATTATA
Statistics
Matches: 92, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
118 23 0.25
119 64 0.70
120 5 0.05
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.50
Consensus pattern (118 bp):
AATTTTATTAAATCATATATTTAATTAAATCATATTTAATAATAATTATGTTAATTTATATTTTA
CAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATTTTATTATTAAG
Found at i:51676399 original size:16 final size:16
Alignment explanation
Indices: 51676378--51676419 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
51676368 ATATTAAATT
*
51676378 ATATATTTTAATTATA
1 ATATATTTTAATAATA
51676394 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
51676409 AT-TATGTTTAA
1 ATATAT-TTTAA
51676420 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:51676531 original size:154 final size:156
Alignment explanation
Indices: 51676369--51676666 Score: 546
Period size: 154 Copynumber: 1.9 Consensus size: 156
51676359 AGTAAATTCA
*
51676369 TATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
1 TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
51676434 TTTATTATTGAT-AT-TAATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAAC
66 TTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAAC
51676497 AAATTTATGCTAATTATTAAGAATTT
131 AAATTTATGCTAATTATTAAGAATTT
51676523 TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
1 TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
*
51676588 TTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATAATCATTTACCAAAA
66 TTTATTATTGATAAT-ATAATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAA
*
51676653 CAAATTTCTGCTAA
130 CAAATTTATGCTAA
51676667 GGGTATTCTA
Statistics
Matches: 138, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
154 76 0.55
155 2 0.01
157 60 0.43
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.44
Consensus pattern (156 bp):
TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
TTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAAC
AAATTTATGCTAATTATTAAGAATTT
Found at i:51676547 original size:18 final size:17
Alignment explanation
Indices: 51676519--51676553 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
51676509 ATTATTAAGA
*
51676519 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
51676536 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
51676554 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:51676817 original size:16 final size:16
Alignment explanation
Indices: 51676799--51676855 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
51676789 ACACAGTTTT
* *
51676799 TCCATTACACCTCTAT
1 TCCAATACACCTCTAA
*
51676815 TCCATTACACCTCTAA
1 TCCAATACACCTCTAA
51676831 TCCAATACACCTCTAA
1 TCCAATACACCTCTAA
51676847 TCCAATACA
1 TCCAATACA
51676856 GCGAACCAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.33, C:0.37, G:0.00, T:0.30
Consensus pattern (16 bp):
TCCAATACACCTCTAA
Found at i:51677277 original size:15 final size:15
Alignment explanation
Indices: 51677257--51677290 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
51677247 GTCTTTAAAA
51677257 ATAATTTAAAAAATC
1 ATAATTTAAAAAATC
*
51677272 ATAATTTAAAAAATT
1 ATAATTTAAAAAATC
51677287 ATAA
1 ATAA
51677291 ATCAAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (15 bp):
ATAATTTAAAAAATC
Found at i:51677303 original size:21 final size:22
Alignment explanation
Indices: 51677267--51677332 Score: 86
Period size: 20 Copynumber: 3.1 Consensus size: 22
51677257 ATAATTTAAA
51677267 AAATCATAATTTAAAAAATTAT
1 AAATCATAATTTAAAAAATTAT
51677289 AAATCA-AA-TTAAAAAATTA-
1 AAATCATAATTTAAAAAATTAT
*
51677308 AAAT-ATACATTTAAAATATTAT
1 AAATCATA-ATTTAAAAAATTAT
51677330 AAA
1 AAA
51677333 ACAAATAATA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
18 1 0.03
19 5 0.13
20 12 0.31
21 12 0.31
22 9 0.23
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (22 bp):
AAATCATAATTTAAAAAATTAT
Found at i:51677321 original size:41 final size:40
Alignment explanation
Indices: 51677266--51677346 Score: 110
Period size: 41 Copynumber: 2.0 Consensus size: 40
51677256 AATAATTTAA
*
51677266 AAAATCATAATTTAAAAAATTATAAATCAAATTAAAAAATT
1 AAAATCATAATTTAAAAAATTATAAAACAAA-TAAAAAATT
* *
51677307 AAAAT-ATACATTTAAAATATTATAAAACAAATAATAAATT
1 AAAATCATA-ATTTAAAAAATTATAAAACAAATAAAAAATT
51677347 TGAAAAGTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
40 11 0.31
41 25 0.69
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (40 bp):
AAAATCATAATTTAAAAAATTATAAAACAAATAAAAAATT
Found at i:51677421 original size:22 final size:21
Alignment explanation
Indices: 51677387--51677460 Score: 76
Period size: 21 Copynumber: 3.4 Consensus size: 21
51677377 ATTTTATTTA
51677387 TTAAAAAATATATTTAAAATT
1 TTAAAAAATATATTTAAAATT
*
51677408 TTAAAAAATAATATTATAAAACAT
1 TTAAAAAAT-ATATT-TAAAA-TT
* * *
51677432 TTCAAATATACATTTAAAATT
1 TTAAAAAATATATTTAAAATT
*
51677453 TTATAAAA
1 TTAAAAAA
51677461 CAAATAATAA
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
21 15 0.36
22 10 0.24
23 9 0.21
24 8 0.19
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (21 bp):
TTAAAAAATATATTTAAAATT
Found at i:51677493 original size:12 final size:12
Alignment explanation
Indices: 51677455--51677500 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
51677445 TTAAAATTTT
51677455 ATAAAACAAATA
1 ATAAAACAAATA
51677467 AT-AAACAAATAA
1 ATAAAACAAAT-A
*
51677479 ATAAAATAAATA
1 ATAAAACAAATA
*
51677491 ATAAATCAAA
1 ATAAAACAAA
51677501 CGTGTATGGA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 8 0.28
12 14 0.48
13 7 0.24
ACGTcount: A:0.74, C:0.07, G:0.00, T:0.20
Consensus pattern (12 bp):
ATAAAACAAATA
Found at i:51693959 original size:11 final size:11
Alignment explanation
Indices: 51693944--51694058 Score: 67
Period size: 11 Copynumber: 11.4 Consensus size: 11
51693934 AAAAATTAAA
51693944 AAAAAGTATTTT
1 AAAAA-TATTTT
51693956 AAAAATATTTT
1 AAAAATATTTT
51693967 --AAA-A-TTT
1 AAAAATATTTT
* *
51693974 AAAAA-AATTA
1 AAAAATATTTT
51693984 AAAAAGTATTTT
1 AAAAA-TATTTT
*
51693996 AAAAAAATTTT
1 AAAAATATTTT
51694007 -AAAA-A--TT
1 AAAAATATTTT
51694014 AAAAA-A--TT
1 AAAAATATTTT
*
51694022 AAAAA-ATTTA
1 AAAAATATTTT
51694032 AAAAAGTATTTT
1 AAAAA-TATTTT
*
51694044 AAAAGTATTTT
1 AAAAATATTTT
51694055 AAAA
1 AAAA
51694059 TTAAAAAAAT
Statistics
Matches: 86, Mismatches: 7, Indels: 21
0.75 0.06 0.18
Matches are distributed among these distances:
7 5 0.06
8 14 0.16
9 8 0.09
10 17 0.20
11 21 0.24
12 21 0.24
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:51694018 original size:8 final size:9
Alignment explanation
Indices: 51693953--51694036 Score: 66
Period size: 9 Copynumber: 9.0 Consensus size: 9
51693943 AAAAAAGTAT
51693953 TTTAAAAATA
1 TTTAAAAA-A
*
51693963 TTT-TAAAA
1 TTTAAAAAA
51693971 TTTAAAAAAA
1 TTT-AAAAAA
*
51693981 TTAAAAAAGTA
1 TTTAAAAA--A
51693992 TTTTAAAAAAA
1 -TTT-AAAAAA
*
51694003 TTTTAAAAA
1 TTTAAAAAA
51694012 -TTAAAAAA
1 TTTAAAAAA
51694020 -TTAAAAAA
1 TTTAAAAAA
51694028 TTTAAAAAA
1 TTTAAAAAA
51694037 GTATTTTAAA
Statistics
Matches: 61, Mismatches: 6, Indels: 15
0.74 0.07 0.18
Matches are distributed among these distances:
8 19 0.31
9 21 0.34
10 12 0.20
11 2 0.03
12 2 0.03
13 5 0.08
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.35
Consensus pattern (9 bp):
TTTAAAAAA
Found at i:51694026 original size:47 final size:46
Alignment explanation
Indices: 51693975--51694088 Score: 158
Period size: 47 Copynumber: 2.4 Consensus size: 46
51693965 TTAAAATTTA
*
51693975 AAAAAATTAAAAAAGTATTTTAAAAAAATTTTAAAAATTAAAAAATT
1 AAAAAATTAAAAAAGTATTTTAAAAAAATTTT-AAAATTAAAAAAAT
**
51694022 AAAAAATTTAAAAAAGTATTTTAAAAGTATTTTAAAATTAAAAAAAT
1 AAAAAA-TTAAAAAAGTATTTTAAAAAAATTTTAAAATTAAAAAAAT
*
51694069 AAAAAA-TAATAAAAATATTT
1 AAAAAATTAA-AAAAGTATTT
51694089 AATATATTAG
Statistics
Matches: 61, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
45 3 0.05
46 9 0.15
47 25 0.41
48 24 0.39
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (46 bp):
AAAAAATTAAAAAAGTATTTTAAAAAAATTTTAAAATTAAAAAAAT
Found at i:51694082 original size:48 final size:49
Alignment explanation
Indices: 51693973--51694083 Score: 165
Period size: 48 Copynumber: 2.3 Consensus size: 49
51693963 TTTTAAAATT
*
51693973 TAAAAAA-ATTAAAAAAGTATTTTAAAAAAATTTTAAAAATTAAAAAAT
1 TAAAAAATATTAAAAAAGTATTTTAAAAAAATTTTAAAAATTAAAAAAA
**
51694021 TAAAAAAT-TTAAAAAAGTATTTTAAAAGTATTTT-AAAATTAAAAAAA
1 TAAAAAATATTAAAAAAGTATTTTAAAAAAATTTTAAAAATTAAAAAAA
*
51694068 TAAAAAATAATAAAAA
1 TAAAAAATATTAAAAA
51694084 TATTTAATAT
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
47 20 0.35
48 37 0.65
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (49 bp):
TAAAAAATATTAAAAAAGTATTTTAAAAAAATTTTAAAAATTAAAAAAA
Found at i:51696028 original size:23 final size:22
Alignment explanation
Indices: 51696002--51696056 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
51695992 CCAATCTATT
* *
51696002 ATTCAAATTATTCAAATTGTAAA
1 ATTCAAATTATTCAAACT-CAAA
* *
51696025 ATTCAACTCGATTCAAACTCAAA
1 ATTCAAAT-TATTCAAACTCAAA
51696048 ATTCAAATT
1 ATTCAAATT
51696057 GTAAAATTTT
Statistics
Matches: 25, Mismatches: 6, Indels: 3
0.74 0.18 0.09
Matches are distributed among these distances:
23 17 0.68
24 8 0.32
ACGTcount: A:0.45, C:0.16, G:0.04, T:0.35
Consensus pattern (22 bp):
ATTCAAATTATTCAAACTCAAA
Found at i:51698761 original size:21 final size:22
Alignment explanation
Indices: 51698724--51698776 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
51698714 CCGGCCCATT
**
51698724 TTTTAATAAA-TACAAAAATTTA
1 TTTTAA-AAATTACAAAAAAGTA
51698746 TTTTAAAAATTA-AAAAAAGTA
1 TTTTAAAAATTACAAAAAAGTA
51698767 TTTTAAAAAT
1 TTTTAAAAAT
51698777 ATTTTAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 20 0.71
22 8 0.29
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (22 bp):
TTTTAAAAATTACAAAAAAGTA
Found at i:51721631 original size:42 final size:43
Alignment explanation
Indices: 51721575--51721697 Score: 142
Period size: 42 Copynumber: 2.9 Consensus size: 43
51721565 AAGCTCATAG
* * * * *
51721575 GAGCTGAACGGAAACCCATAAGGGTTAATCTGAAGCTCAGAAA
1 GAGCTAAACTGAAACCAATAAGGGTTAAACTGAAACTCAGAAA
* * *
51721618 -AGCTAAACTGAAACCTATTAGGGTTAAAATGAAACTC-GAAA
1 GAGCTAAACTGAAACCAATAAGGGTTAAACTGAAACTCAGAAA
* *
51721659 GAGCTAAACTTAAACCAAGAAGGGTTAAACTGAAACTCA
1 GAGCTAAACTGAAACCAATAAGGGTTAAACTGAAACTCA
51721698 TATGAGTTGA
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
41 4 0.06
42 62 0.94
ACGTcount: A:0.44, C:0.17, G:0.20, T:0.19
Consensus pattern (43 bp):
GAGCTAAACTGAAACCAATAAGGGTTAAACTGAAACTCAGAAA
Found at i:51723819 original size:16 final size:15
Alignment explanation
Indices: 51723794--51723826 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
51723784 TTGGGTTGAG
51723794 AAAATAATTTAATTA
1 AAAATAATTTAATTA
51723809 AAAATTAATTTAATTA
1 AAAA-TAATTTAATTA
51723825 AA
1 AA
51723827 CTAAATAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
AAAATAATTTAATTA
Found at i:51724051 original size:18 final size:17
Alignment explanation
Indices: 51724007--51724052 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
51723997 CTTCAAGTGG
51724007 AATTTGTATTTTTTAATA
1 AATTT-TATTTTTTAATA
*
51724025 AATTATATTTTTTAATTA
1 AATTTTATTTTTTAA-TA
*
51724043 TATTTTATTT
1 AATTTTATTT
51724053 GAATAGAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 10 0.42
18 14 0.58
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (17 bp):
AATTTTATTTTTTAATA
Found at i:51725161 original size:25 final size:25
Alignment explanation
Indices: 51725124--51725174 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
51725114 GTGCTGCTAT
* * *
51725124 CACAGACGTCGCTAAAGATCATGAC
1 CACAAACGCCGCTAAAGAACATGAC
*
51725149 CACAAACGCCGCTGAAGAACATGAC
1 CACAAACGCCGCTAAAGAACATGAC
51725174 C
1 C
51725175 TTTAACGACG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.37, C:0.31, G:0.20, T:0.12
Consensus pattern (25 bp):
CACAAACGCCGCTAAAGAACATGAC
Found at i:51725195 original size:68 final size:68
Alignment explanation
Indices: 51725084--51725217 Score: 164
Period size: 68 Copynumber: 2.0 Consensus size: 68
51725074 TCTTTCGCAT
* ** * *
51725084 AAACGCCGCTAAAGAACATGACCTTTAGCGGTGCTGCTATCACAGACG-TCGCTAAAGATCATGA
1 AAACGCCGCTAAAGAACATGACCTTTAACGACGCTGCTATCACAAACGCT-GCTAAAGAACATGA
51725148 CCAC
65 CCAC
* * *
51725152 AAACGCCGCTGAAGAACATGACCTTTAACGACGCCT-TTTTCACAAACGCTGCTAAAGAACATGA
1 AAACGCCGCTAAAGAACATGACCTTTAACGACG-CTGCTATCACAAACGCTGCTAAAGAACATGA
51725216 CC
65 CC
51725218 TTTAGCGACG
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
68 53 0.95
69 3 0.05
ACGTcount: A:0.34, C:0.28, G:0.19, T:0.19
Consensus pattern (68 bp):
AAACGCCGCTAAAGAACATGACCTTTAACGACGCTGCTATCACAAACGCTGCTAAAGAACATGAC
CAC
Found at i:51725210 original size:43 final size:43
Alignment explanation
Indices: 51725149--51725250 Score: 143
Period size: 43 Copynumber: 2.4 Consensus size: 43
51725139 AGATCATGAC
* *
51725149 CACAAACGCCGCTGAAGAACATGACCTTTAACGACGCCTT-TTT
1 CACAAACGCTGCTAAAGAACATGACCTTTAACGACG-CTTATTT
*
51725192 CACAAACGCTGCTAAAGAACATGACCTTTAGCGACGCTTATTT
1 CACAAACGCTGCTAAAGAACATGACCTTTAACGACGCTTATTT
**
51725235 CACAAACATTGCTAAA
1 CACAAACGCTGCTAAA
51725251 AGTACCGTTT
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
42 3 0.06
43 50 0.94
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (43 bp):
CACAAACGCTGCTAAAGAACATGACCTTTAACGACGCTTATTT
Found at i:51726920 original size:26 final size:26
Alignment explanation
Indices: 51726891--51726953 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 26
51726881 CAAAGCTTCT
*
51726891 AGTAATAGTAT-TGCAGCAAAGCTGGC
1 AGTAATAGTATCT-AAGCAAAGCTGGC
*
51726917 AGT-ATCAGTATCTAAGCAAAGCTGTC
1 AGTAAT-AGTATCTAAGCAAAGCTGGC
*
51726943 AGTAACAGTAT
1 AGTAATAGTAT
51726954 ACTTCCTCCA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
25 2 0.06
26 27 0.87
27 2 0.06
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (26 bp):
AGTAATAGTATCTAAGCAAAGCTGGC
Found at i:51734704 original size:26 final size:26
Alignment explanation
Indices: 51734657--51734731 Score: 91
Period size: 26 Copynumber: 2.9 Consensus size: 26
51734647 ACCAACATCG
51734657 CAGCAAAGCTG-CAGTAAT-AGTATCA
1 CAGCAAAGCTGCCAGT-ATCAGTATCA
*
51734682 CAGTAAAGCTGCCAGTATCAGTATCA
1 CAGCAAAGCTGCCAGTATCAGTATCA
* * *
51734708 CAGCAAAACTACCAGTAACAGTAT
1 CAGCAAAGCTGCCAGTATCAGTAT
51734732 ACTTCCTCCA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
25 12 0.28
26 31 0.72
ACGTcount: A:0.40, C:0.23, G:0.17, T:0.20
Consensus pattern (26 bp):
CAGCAAAGCTGCCAGTATCAGTATCA
Found at i:51742003 original size:66 final size:66
Alignment explanation
Indices: 51741929--51742053 Score: 189
Period size: 66 Copynumber: 1.9 Consensus size: 66
51741919 TCGCTGCCGC
*
51741929 ATCTGCTTTAAGCTATTGCTGGAGTTCTTCATA-CTTTCGTTGAACCTCAGCTTCTCTCGCTGCT
1 ATCTGCTTTAAGCTATAGCTGGAGTTCTTCATATCTTT-GTTGAACCTCAGCTTCTCTCGCTGCT
51741993 AT
65 AT
* * * *
51741995 ATCTGCTTTAAGTTGTAGCTGGAGTTCTTCATATCTTTTTTGAACCTTAGCTTCTCTCG
1 ATCTGCTTTAAGCTATAGCTGGAGTTCTTCATATCTTTGTTGAACCTCAGCTTCTCTCG
51742054 ATGTTGCCTC
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
66 49 0.92
67 4 0.08
ACGTcount: A:0.17, C:0.23, G:0.17, T:0.43
Consensus pattern (66 bp):
ATCTGCTTTAAGCTATAGCTGGAGTTCTTCATATCTTTGTTGAACCTCAGCTTCTCTCGCTGCTA
T
Found at i:51742069 original size:66 final size:66
Alignment explanation
Indices: 51741928--51742076 Score: 174
Period size: 66 Copynumber: 2.3 Consensus size: 66
51741918 CTCGCTGCCG
* * * * *
51741928 CATCTGCTTTAAGCTATTGCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGCTGCT
1 CATCCGCTTTAAGTTGTAGCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGATGCT
51741993 A
66 A
* * * * *
51741994 TATCTGCTTTAAGTTGTAGCTGGAGTTCTTCATATCTTT-TTTGAACCTTAGCTTCTCTCGATGT
1 CATCCGCTTTAAGTTGTAGCTGGAGTTCTTCATA-CTTTCGTTGAACCTCAGCTTCTCTCGATGC
*
51742058 TG
65 TA
*
51742060 CCTCCGCTTTAAGTTGT
1 CATCCGCTTTAAGTTGT
51742077 GTAATTTGCT
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
66 66 0.94
67 4 0.06
ACGTcount: A:0.16, C:0.23, G:0.17, T:0.43
Consensus pattern (66 bp):
CATCCGCTTTAAGTTGTAGCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGATGCT
A
Found at i:51747530 original size:9 final size:9
Alignment explanation
Indices: 51747513--51747749 Score: 146
Period size: 9 Copynumber: 27.9 Consensus size: 9
51747503 TAAGTATAAT
*
51747513 TAAGCTATG
1 TAAGTTATG
51747522 TAAGTTATG
1 TAAGTTATG
*
51747531 TAAGTTATA
1 TAAGTTATG
*
51747540 TAAGTTGTG
1 TAAGTTATG
*
51747549 T-A-TAATG
1 TAAGTTATG
51747556 TAAGTTATG
1 TAAGTTATG
*
51747565 AAAGTTATG
1 TAAGTTATG
51747574 T-A-TTATG
1 TAAGTTATG
*
51747581 TAAGTTATT
1 TAAGTTATG
*
51747590 TAAGTTGTG
1 TAAGTTATG
51747599 T-A-TTATG
1 TAAGTTATG
*
51747606 TAAGTCATG
1 TAAGTTATG
* *
51747615 TAGGCTATG
1 TAAGTTATG
51747624 T-A-TTATG
1 TAAGTTATG
51747631 TAAGTTATG
1 TAAGTTATG
* *
51747640 AAAGTTTTATA
1 TAAG--TTATG
*
51747651 TAAGTGAT-
1 TAAGTTATG
*
51747659 TAA-ATATG
1 TAAGTTATG
51747667 T-A-TTATG
1 TAAGTTATG
* *
51747674 TAATTTATT
1 TAAGTTATG
51747683 TAAGTTATG
1 TAAGTTATG
*
51747692 TAAGTTGTG
1 TAAGTTATG
51747701 T-A-TTATG
1 TAAGTTATG
* *
51747708 CAAGTCATG
1 TAAGTTATG
* *
51747717 TAGGCTATG
1 TAAGTTATG
51747726 T-A-TTATG
1 TAAGTTATG
51747733 TAAGTTATG
1 TAAGTTATG
*
51747742 AAAGTTAT
1 TAAGTTAT
51747750 ATATAAGTTA
Statistics
Matches: 171, Mismatches: 40, Indels: 34
0.70 0.16 0.14
Matches are distributed among these distances:
7 37 0.22
8 15 0.09
9 112 0.65
11 7 0.04
ACGTcount: A:0.33, C:0.03, G:0.20, T:0.44
Consensus pattern (9 bp):
TAAGTTATG
Found at i:51747639 original size:16 final size:18
Alignment explanation
Indices: 51747513--51747749 Score: 146
Period size: 16 Copynumber: 13.9 Consensus size: 18
51747503 TAAGTATAAT
*
51747513 TAAGCTATGTAAGTTATG
1 TAAGTTATGTAAGTTATG
* *
51747531 TAAGTTATATAAGTTGTG
1 TAAGTTATGTAAGTTATG
*
51747549 T-A-TAATGTAAGTTATG
1 TAAGTTATGTAAGTTATG
*
51747565 AAAGTTATGT-A-TTATG
1 TAAGTTATGTAAGTTATG
* *
51747581 TAAGTTATTTAAGTTGTG
1 TAAGTTATGTAAGTTATG
*
51747599 T-A-TTATGTAAGTCATG
1 TAAGTTATGTAAGTTATG
* *
51747615 TAGGCTATGT-A-TTATG
1 TAAGTTATGTAAGTTATG
* *
51747631 TAAGTTATGAAAGTTTTATA
1 TAAGTTATGTAAG--TTATG
* *
51747651 TAAGTGAT-TAA-ATATG
1 TAAGTTATGTAAGTTATG
* *
51747667 T-A-TTATGTAATTTATT
1 TAAGTTATGTAAGTTATG
*
51747683 TAAGTTATGTAAGTTGTG
1 TAAGTTATGTAAGTTATG
* *
51747701 T-A-TTATGCAAGTCATG
1 TAAGTTATGTAAGTTATG
* *
51747717 TAGGCTATGT-A-TTATG
1 TAAGTTATGTAAGTTATG
*
51747733 TAAGTTATGAAAGTTAT
1 TAAGTTATGTAAGTTAT
51747750 ATATAAGTTA
Statistics
Matches: 160, Mismatches: 41, Indels: 36
0.68 0.17 0.15
Matches are distributed among these distances:
14 3 0.02
15 4 0.03
16 78 0.49
17 11 0.07
18 51 0.32
19 2 0.01
20 11 0.07
ACGTcount: A:0.33, C:0.03, G:0.20, T:0.44
Consensus pattern (18 bp):
TAAGTTATGTAAGTTATG
Found at i:51747705 original size:102 final size:100
Alignment explanation
Indices: 51747569--51747764 Score: 329
Period size: 102 Copynumber: 1.9 Consensus size: 100
51747559 GTTATGAAAG
* *
51747569 TTATGTATTATGTAAGTTATTTAAGTTGTGTATTATGTAAGTCATGTAGGCTATGTATTATGTAA
1 TTATGTATTATGTAAGTTATGTAAGTTGTGTATTATGCAAGTCATGTAGGCTATGTATTATGTAA
*
51747634 GTTATGAAAGTTTTATATAAGTGATTAAATATGTA
66 GTTATGAAAGTTATATATAAGTGATTAAATATGTA
*
51747669 TTATGTAATTTATTTAAGTTATGTAAGTTGTGTATTATGCAAGTCATGTAGGCTATGTATTATGT
1 TTATGT-A-TTATGTAAGTTATGTAAGTTGTGTATTATGCAAGTCATGTAGGCTATGTATTATGT
*
51747734 AAGTTATGAAAGTTATATATAAGTTATTAAA
64 AAGTTATGAAAGTTATATATAAGTGATTAAA
51747765 AATATATATA
Statistics
Matches: 89, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
100 6 0.07
101 1 0.01
102 82 0.92
ACGTcount: A:0.34, C:0.03, G:0.18, T:0.45
Consensus pattern (100 bp):
TTATGTATTATGTAAGTTATGTAAGTTGTGTATTATGCAAGTCATGTAGGCTATGTATTATGTAA
GTTATGAAAGTTATATATAAGTGATTAAATATGTA
Found at i:51747706 original size:25 final size:25
Alignment explanation
Indices: 51747526--51747693 Score: 161
Period size: 25 Copynumber: 7.0 Consensus size: 25
51747516 GCTATGTAAG
* *
51747526 TTATGTAAGTTATATAAGTTGTGTA
1 TTATGTAAGTTATGTAAGTTATGTA
* *
51747551 TAATGTAAGTTATGAAAGTTATGTA
1 TTATGTAAGTTATGTAAGTTATGTA
* *
51747576 TTATGTAAGTTATTTAAGTTGTGTA
1 TTATGTAAGTTATGTAAGTTATGTA
* * *
51747601 TTATGTAAGTCATGTAGGCTATGTA
1 TTATGTAAGTTATGTAAGTTATGTA
*
51747626 TTATGTAAGTTATGAAAGTT-T-TA
1 TTATGTAAGTTATGTAAGTTATGTA
* *
51747649 -TA--TAAGTGAT-TAA-ATATGTA
1 TTATGTAAGTTATGTAAGTTATGTA
* *
51747669 TTATGTAATTTATTTAAGTTATGTA
1 TTATGTAAGTTATGTAAGTTATGTA
51747694 AGTTGTGTAT
Statistics
Matches: 113, Mismatches: 23, Indels: 14
0.75 0.15 0.09
Matches are distributed among these distances:
18 1 0.01
19 3 0.03
20 9 0.08
21 2 0.02
22 2 0.02
23 8 0.07
24 4 0.04
25 84 0.74
ACGTcount: A:0.34, C:0.01, G:0.18, T:0.46
Consensus pattern (25 bp):
TTATGTAAGTTATGTAAGTTATGTA
Found at i:51747712 original size:25 final size:25
Alignment explanation
Indices: 51747684--51747749 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
51747674 TAATTTATTT
*
51747684 AAGTTATGTAAGTTGTGTATTATGC
1 AAGTTATGTAAGTTATGTATTATGC
* * * *
51747709 AAGTCATGTAGGCTATGTATTATGT
1 AAGTTATGTAAGTTATGTATTATGC
*
51747734 AAGTTATGAAAGTTAT
1 AAGTTATGTAAGTTAT
51747750 ATATAAGTTA
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.32, C:0.05, G:0.23, T:0.41
Consensus pattern (25 bp):
AAGTTATGTAAGTTATGTATTATGC
Found at i:51747747 original size:50 final size:50
Alignment explanation
Indices: 51747516--51747747 Score: 229
Period size: 50 Copynumber: 4.6 Consensus size: 50
51747506 GTATAATTAA
* * *
51747516 GCTATGTAAGTTATGTAAGTTAT-ATAAGTTGTGTATAATGTAAGTTATGAAA
1 GCTATGT-A-TTATGTAAGTTATGA-AAGTTGTGTATAATGTAAGTCATGTAG
* ** *
51747568 GTTATGTATTATGTAAGTTATTTAAGTTGTGTATTATGTAAGTCATGTAG
1 GCTATGTATTATGTAAGTTATGAAAGTTGTGTATAATGTAAGTCATGTAG
* * *
51747618 GCTATGTATTATGTAAGTTATGAAAGTTTTATATAAGTGATTAAAT-ATGTA-
1 GCTATGTATTATGTAAGTTATGAAAGTTGTGTATAA-TG--TAAGTCATGTAG
* * * * *
51747669 -TTATGTAATTTATTTAAGTTATGTAAGTTGTGTATTATGCAAGTCATGTAG
1 GCTATGT-A-TTATGTAAGTTATGAAAGTTGTGTATAATGTAAGTCATGTAG
51747720 GCTATGTATTATGTAAGTTATGAAAGTT
1 GCTATGTATTATGTAAGTTATGAAAGTT
51747748 ATATATAAGT
Statistics
Matches: 147, Mismatches: 24, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
49 3 0.02
50 94 0.64
51 7 0.05
52 39 0.27
53 4 0.03
ACGTcount: A:0.33, C:0.03, G:0.20, T:0.44
Consensus pattern (50 bp):
GCTATGTATTATGTAAGTTATGAAAGTTGTGTATAATGTAAGTCATGTAG
Found at i:51747758 original size:20 final size:20
Alignment explanation
Indices: 51747733--51747775 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
51747723 ATGTATTATG
**
51747733 TAAGTTATGAAAGTTATATA
1 TAAGTTATGAAAAATATATA
*
51747753 TAAGTTATTAAAAATATATA
1 TAAGTTATGAAAAATATATA
51747773 TAA
1 TAA
51747776 ATTTTTAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (20 bp):
TAAGTTATGAAAAATATATA
Found at i:51747783 original size:20 final size:19
Alignment explanation
Indices: 51747747--51747792 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
51747737 TTATGAAAGT
*
51747747 TATATATAAGTTATTAAAAA
1 TATATATAAATTATT-AAAA
* *
51747767 TATATATAAATTTTTAATA
1 TATATATAAATTATTAAAA
51747786 TATATAT
1 TATATAT
51747793 TAAAAATGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (19 bp):
TATATATAAATTATTAAAA
Found at i:51747836 original size:23 final size:22
Alignment explanation
Indices: 51747808--51747852 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
51747798 ATGTATATAA
*
51747808 ATATTAATAAGTTATTAAGTTAT
1 ATATTAAAAAGTTA-TAAGTTAT
*
51747831 ATATTAAAAATTTATAAGTTAT
1 ATATTAAAAAGTTATAAGTTAT
51747853 GTAAATTATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (22 bp):
ATATTAAAAAGTTATAAGTTAT
Found at i:51747848 original size:30 final size:30
Alignment explanation
Indices: 51747801--51747861 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
51747791 ATTAAAAATG
* *
51747801 TATATAAATATTAATAAGTTAT-TAAGTTA
1 TATATAAAAATTAATAAGTTATGTAAATTA
*
51747830 TATATTAAAAATTTATAAGTTATGTAAATTA
1 TATA-TAAAAATTAATAAGTTATGTAAATTA
51747861 T
1 T
51747862 GAACTCATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 4 0.15
30 16 0.59
31 7 0.26
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.46
Consensus pattern (30 bp):
TATATAAAAATTAATAAGTTATGTAAATTA
Found at i:51749219 original size:21 final size:22
Alignment explanation
Indices: 51749188--51749234 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
51749178 TAGAAGGACA
*
51749188 AAAAAAGGTTCAAAGTTGTCCT
1 AAAAAAGGTTCAAAGTTGCCCT
51749210 AAAAAA-GTTCAAAGTTGCCCT
1 AAAAAAGGTTCAAAGTTGCCCT
51749231 AAAA
1 AAAA
51749235 TAAATTTACA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 18 0.75
22 6 0.25
ACGTcount: A:0.47, C:0.15, G:0.15, T:0.23
Consensus pattern (22 bp):
AAAAAAGGTTCAAAGTTGCCCT
Found at i:51750069 original size:104 final size:102
Alignment explanation
Indices: 51749929--51750140 Score: 282
Period size: 102 Copynumber: 2.1 Consensus size: 102
51749919 CGCAAAATAT
* * * * * *
51749929 TATTTCATTTTGAACAAAATGACGTCGTTTTGCTATGCACAA-ACTTTTTTATTTTGTTTTTTAA
1 TATTTCATTTTGAACAAAATGACGCCATTTTCCTATGCA-AATAATTTTTT-TATT-TTTTATAA
* * * *
51749993 ATTGATTTATTTTTTGCGGCGTTTTTATGGAAAATGCCGC
63 ATTGATTTATATTTTGCGGCATTTTTATAGAAAACGCCGC
*
51750033 TATTTCATTTTGAACAAAATGACGCCATTTTCCTATGCAAATAATTTTTTTATTTTTTATAATTT
1 TATTTCATTTTGAACAAAATGACGCCATTTTCCTATGCAAATAATTTTTTTATTTTTTATAAATT
*
51750098 TATTTATATTTTGCGGCATTTTTATAGAAAACGCCGC
66 GATTTATATTTTGCGGCATTTTTATAGAAAACGCCGC
51750135 TATTTC
1 TATTTC
51750141 TTATCTTTTG
Statistics
Matches: 95, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
102 47 0.49
103 5 0.05
104 43 0.45
ACGTcount: A:0.26, C:0.13, G:0.12, T:0.48
Consensus pattern (102 bp):
TATTTCATTTTGAACAAAATGACGCCATTTTCCTATGCAAATAATTTTTTTATTTTTTATAAATT
GATTTATATTTTGCGGCATTTTTATAGAAAACGCCGC
Found at i:51750094 original size:18 final size:20
Alignment explanation
Indices: 51750073--51750109 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
51750063 TCCTATGCAA
51750073 ATAATTTT-TTTAT-TTTTT
1 ATAATTTTATTTATATTTTT
51750091 ATAATTTTATTTATATTTT
1 ATAATTTTATTTATATTTT
51750110 GCGGCATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
19 5 0.29
20 4 0.24
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (20 bp):
ATAATTTTATTTATATTTTT
Found at i:51750109 original size:19 final size:18
Alignment explanation
Indices: 51750073--51750109 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
51750063 TCCTATGCAA
*
51750073 ATAATTTTTTTATTTTTT
1 ATAATTTTTTTATATTTT
51750091 ATAATTTTATTTATATTTT
1 ATAATTTT-TTTATATTTT
51750110 GCGGCATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (18 bp):
ATAATTTTTTTATATTTT
Found at i:51750185 original size:253 final size:255
Alignment explanation
Indices: 51749729--51750217 Score: 795
Period size: 253 Copynumber: 1.9 Consensus size: 255
51749719 TTGCGGCGTT
*
51749729 TTTTTATAAATTGATTTACTTTTTGCGGCGTTTTTCTGAAAAACGCCGCTATTTCATTTTGAACA
1 TTTTTATAAATTGATTTACTTTTTGCGGCGTTTTTATGAAAAACGCCGCTATTTCATTTTGAACA
* * * * *
51749794 AAATGGCGCCGTTTTGCTATGCAAATATTTTTTTCCTATTTTTTATAATTTTATTTATTTTTTGC
66 AAATGACGCCATTTTCCTATGCAAATAATTTTTT-CTATTTTTTATAATTTTATTTATATTTTGC
** * *
51749859 GGTGTTTTTATAGAAAACGCCGCTATTGCTTATTTCTCGCGGCGTTTTTTACAAAATCGCCGCAA
130 GGCATTTTTATAGAAAACGCCGCTATTGCTTATTTCTCGCGGCGTTTTTCACAAAAACGCCGCAA
*
51749924 AATATTATTTCATTTTGAACAAAATGACGTCGTTTTGCTATGCACAAACTTTTTTATTTTG
195 AATATTATTTCATTTTGAACAAAATGACGCCGTTTTGCTATGCACAAACTTTTTTATTTTG
* * *
51749985 TTTTT-TAAATTGATTTATTTTTTGCGGCGTTTTTATGGAAAATGCCGCTATTTCATTTTGAACA
1 TTTTTATAAATTGATTTACTTTTTGCGGCGTTTTTATGAAAAACGCCGCTATTTCATTTTGAACA
51750049 AAATGACGCCATTTTCCTATGCAAATAATTTTTT-TATTTTTTATAATTTTATTTATATTTTGCG
66 AAATGACGCCATTTTCCTATGCAAATAATTTTTTCTATTTTTTATAATTTTATTTATATTTTGCG
* *
51750113 GCATTTTTATAGAAAACGCCGCTATTTCTTATCTT-TTGCGGCGTTTTTCACAAAAACGCCGCAA
131 GCATTTTTATAGAAAACGCCGCTATTGCTTAT-TTCTCGCGGCGTTTTTCACAAAAACGCCGCAA
51750177 AATATTATTTCATTTTGAACAAAATGACGCCGTTTTGCTAT
195 AATATTATTTCATTTTGAACAAAATGACGCCGTTTTGCTAT
51750218 TTTGTTTCTA
Statistics
Matches: 216, Mismatches: 16, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
253 124 0.57
254 2 0.01
255 85 0.39
256 5 0.02
ACGTcount: A:0.26, C:0.15, G:0.13, T:0.45
Consensus pattern (255 bp):
TTTTTATAAATTGATTTACTTTTTGCGGCGTTTTTATGAAAAACGCCGCTATTTCATTTTGAACA
AAATGACGCCATTTTCCTATGCAAATAATTTTTTCTATTTTTTATAATTTTATTTATATTTTGCG
GCATTTTTATAGAAAACGCCGCTATTGCTTATTTCTCGCGGCGTTTTTCACAAAAACGCCGCAAA
ATATTATTTCATTTTGAACAAAATGACGCCGTTTTGCTATGCACAAACTTTTTTATTTTG
Found at i:51750669 original size:22 final size:22
Alignment explanation
Indices: 51750644--51750686 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
51750634 ACCTTAAATC
51750644 TCTAAAACCTAAACCCCTAACG
1 TCTAAAACCTAAACCCCTAACG
**
51750666 TCTAACCCCTAAACCCCTAAC
1 TCTAAAACCTAAACCCCTAAC
51750687 CCCTAAACCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.37, C:0.42, G:0.02, T:0.19
Consensus pattern (22 bp):
TCTAAAACCTAAACCCCTAACG
Found at i:51750692 original size:22 final size:22
Alignment explanation
Indices: 51750651--51750692 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
51750641 ATCTCTAAAA
**
51750651 CCTAAACCCCTAACGTCTAACC
1 CCTAAACCCCTAACCCCTAACC
51750673 CCTAAACCCCTAACCCCTAA
1 CCTAAACCCCTAACCCCTAA
51750693 ACCTTAAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.48, G:0.02, T:0.17
Consensus pattern (22 bp):
CCTAAACCCCTAACCCCTAACC
Found at i:51750694 original size:15 final size:15
Alignment explanation
Indices: 51750667--51750695 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
51750657 CCCCTAACGT
51750667 CTAACCCCTAAACCC
1 CTAACCCCTAAACCC
51750682 CTAACCCCTAAACC
1 CTAACCCCTAAACC
51750696 TTAAATCTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.52, G:0.00, T:0.14
Consensus pattern (15 bp):
CTAACCCCTAAACCC
Found at i:51750700 original size:22 final size:21
Alignment explanation
Indices: 51750648--51750696 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
51750638 TAAATCTCTA
**
51750648 AAACCTAAACCCCTAACGTCT
1 AAACCTAAACCCCTAACCCCT
*
51750669 AACCCCTAAACCCCTAACCCCT
1 AA-ACCTAAACCCCTAACCCCT
51750691 AAACCT
1 AAACCT
51750697 TAAATCTCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 5 0.22
22 18 0.78
ACGTcount: A:0.37, C:0.45, G:0.02, T:0.16
Consensus pattern (21 bp):
AAACCTAAACCCCTAACCCCT
Found at i:51750732 original size:14 final size:14
Alignment explanation
Indices: 51750715--51750756 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
51750705 AACCCTTAAA
*
51750715 CCATAATCCCTAAT
1 CCATAATCCCTAAC
51750729 CCATAATCCCTAGAC
1 CCATAATCCCTA-AC
*
51750744 CCATACTCCCTAA
1 CCATAATCCCTAA
51750757 ACCTTAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 13 0.52
15 12 0.48
ACGTcount: A:0.33, C:0.40, G:0.02, T:0.24
Consensus pattern (14 bp):
CCATAATCCCTAAC
Found at i:51750976 original size:14 final size:14
Alignment explanation
Indices: 51750957--51750991 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
51750947 TCCTAACTCT
**
51750957 TAACCCTAAACGTC
1 TAACCCTAAACCCC
51750971 TAACCCTAAACCCC
1 TAACCCTAAACCCC
51750985 TAACCCT
1 TAACCCT
51750992 CTAACCCTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.34, C:0.43, G:0.03, T:0.20
Consensus pattern (14 bp):
TAACCCTAAACCCC
Found at i:51750994 original size:22 final size:23
Alignment explanation
Indices: 51750932--51751026 Score: 78
Period size: 22 Copynumber: 4.4 Consensus size: 23
51750922 ACCCTTGAAT
*
51750932 CCTTAAA-CCCTAAA-TTCCTAAC
1 CCTTAAACCCCTAAACCT-CTAAC
* *
51750954 TCTT-AA-CCCTAAACGTCTAAC
1 CCTTAAACCCCTAAACCTCTAAC
*
51750975 CC-TAAACCCCTAACCCTCTAAC
1 CCTTAAACCCCTAAACCTCTAAC
* *
51750997 CCTTAAA-CCTTAAATCTC-AAC
1 CCTTAAACCCCTAAACCTCTAAC
51751018 CCTTAAACC
1 CCTTAAACC
51751027 ATAATCCCTA
Statistics
Matches: 60, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
20 1 0.02
21 27 0.45
22 28 0.47
23 4 0.07
ACGTcount: A:0.35, C:0.39, G:0.01, T:0.25
Consensus pattern (23 bp):
CCTTAAACCCCTAAACCTCTAAC
Found at i:51751042 original size:14 final size:14
Alignment explanation
Indices: 51751025--51751051 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
51751015 AACCCTTAAA
51751025 CCATAATCCCTAAT
1 CCATAATCCCTAAT
51751039 CCATAATCCCTAA
1 CCATAATCCCTAA
51751052 ACCCATACTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.37, G:0.00, T:0.26
Consensus pattern (14 bp):
CCATAATCCCTAAT
Found at i:51751045 original size:310 final size:304
Alignment explanation
Indices: 51750528--51751137 Score: 885
Period size: 310 Copynumber: 2.0 Consensus size: 304
51750518 AATATATTTG
51750528 ATTTATTATTATCTCTTTTACAACTATATAAGAACATATTTAAAATATAAATTAAAAAAATAATT
1 ATTTATTATTATCTCTTTTACAACTATATAAGAACATATTTAAAATATAAATT-AAAAAATAATT
* *
51750593 AATCTAAACTCAAAACCTTAACTCGACCCCTGAATCTCTAAACCTTAAATCTCTAAAACCTAAAC
65 AATCTAAACCCAAAACCTTAACTCGACCCCTGAATCTCTAAACCCTAAATCTCTAAAACCTAAAC
*
51750658 CCCTAACGTCTAACCCCTAAACCCCTAACCCCTAAACCTTAAATCTCAACCCTTAAACCATAATC
130 CCCTAACGCCTAACCCCTAAACCCCTAACCCCTAAACCTTAAATCTCAACCCTTAAACCATAATC
* * *
51750723 CCTAATCCATAATCCCTAGACCCATACTCCCTAAACCTTAAAATATG-AACTCCTAAACCGGCCT
195 CCTAATCCATAATCCCTAAACCCATACTCCATAAACCTTAAAA-ACGTAACTCCTAAACCGGCCT
* *
51750787 TAAATCTTAAATAAATCATATACCCTAAACCAAAAACCCTAAACAA
259 TAAATCTTAAATAAATCATAGACCCAAAACCAAAAACCCTAAACAA
* *
51750833 ATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTCAAATATAAATT-AAAAA-AATTA
1 ATTTATTATTATCTCTTTTACAACTATATAAGAACATATTTAAAATATAAATTAAAAAATAATTA
*
51750896 ATCTAAACGCCCAAAATCC-TAACTCGACCCTTGAATC-CTTAAACCCTAAAT-TCCTAACTCTT
66 ATCTAAA--CCCAAAA-CCTTAACTCGACCCCTGAATCTC-TAAACCCTAAATCT-CTAA-----
** *
51750958 AACCCTAAACGTCTAAC-CCTAAACCCCT-AACCCTCTAACCCTTAAACCTTAAATCTCAACCCT
121 AA-CCTAAACCCCTAACGCCT-AACCCCTAAACCC-CTAACCCCTAAACCTTAAATCTCAACCCT
*
51751021 TAAACCATAATCCCTAATCCATAATCCCTAAACCCATACTCCATATACCTTAAAAACGTAACTCC
183 TAAACCATAATCCCTAATCCATAATCCCTAAACCCATACTCCATAAACCTTAAAAACGTAACTCC
*
51751086 TAAACTGGCCTTAAATCTTAAATAAATCATAGACCCAAAACCAAAAACCCTA
248 TAAACCGGCCTTAAATCTTAAATAAATCATAGACCCAAAACCAAAAACCCTA
51751138 TGTTTTTTTT
Statistics
Matches: 275, Mismatches: 16, Indels: 23
0.88 0.05 0.07
Matches are distributed among these distances:
302 12 0.04
303 7 0.03
304 38 0.14
305 53 0.19
309 11 0.04
310 154 0.56
ACGTcount: A:0.41, C:0.28, G:0.03, T:0.27
Consensus pattern (304 bp):
ATTTATTATTATCTCTTTTACAACTATATAAGAACATATTTAAAATATAAATTAAAAAATAATTA
ATCTAAACCCAAAACCTTAACTCGACCCCTGAATCTCTAAACCCTAAATCTCTAAAACCTAAACC
CCTAACGCCTAACCCCTAAACCCCTAACCCCTAAACCTTAAATCTCAACCCTTAAACCATAATCC
CTAATCCATAATCCCTAAACCCATACTCCATAAACCTTAAAAACGTAACTCCTAAACCGGCCTTA
AATCTTAAATAAATCATAGACCCAAAACCAAAAACCCTAAACAA
Found at i:51751511 original size:115 final size:115
Alignment explanation
Indices: 51751161--51751590 Score: 482
Period size: 114 Copynumber: 3.8 Consensus size: 115
51751151 GCGCTTTACC
* * * *
51751161 AAAAACGCCGTTAAATCCCCGAAAGCTCAGACAACGGCGTCGTTGGGCTTA-TGTCTTTTTGCGG
1 AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGTTTTTTTTTGCGG
* *
51751225 CGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGC-TTCCTA
66 CGCTTTCTCAAAAACGCTGCTAAAGCCCTGA-AATTAGCGGCGCTTTCCTA
* ** ** * * * * *
51751275 AAAAACGCCACTAAATCAGCGAAAGCTCAGAAAATAGCATCGTTAGGCTTAG-TTTATTTAGCAG
1 AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGTTTTTTTTTGCGG
* * * * *
51751339 CGCTTCCCCAAAAACG-TCGCTAAAGCCCTGAACATTAACAGCGCTTT-TTA
66 CGCTTTCTCAAAAACGCT-GCTAAAGCCCTGAA-ATTAGCGGCGCTTTCCTA
* * *
51751389 AAAAACGCCGCTACATCCCCGAAAGCCCAGAAAACGGGGTCGTTGGGCTTAGGTTTTTTTTTGCG
1 AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTA-GTTTTTTTTTGCG
* *
51751454 GCGCTTTATC-AAAACGCTGTTAAAGCCCTGGAAATTAGCGGCGCTTTCCT-
65 GCGCTTTCTCAAAAACGCTGCTAAAGCCCT-GAAATTAGCGGCGCTTTCCTA
* *
51751504 AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCATTGGGCTTAG-GTTTTTTTGCGG
1 AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGTTTTTTTTTGCGG
*
51751568 CACTTTC-CGAAAAACGCTGCTAA
66 CGCTTTCTC-AAAAACGCTGCTAA
51751591 TATGCTTATT
Statistics
Matches: 256, Mismatches: 49, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
112 1 0.00
113 16 0.06
114 141 0.55
115 78 0.30
116 20 0.08
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.24
Consensus pattern (115 bp):
AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGTTTTTTTTTGCGG
CGCTTTCTCAAAAACGCTGCTAAAGCCCTGAAATTAGCGGCGCTTTCCTA
Found at i:51751583 original size:229 final size:228
Alignment explanation
Indices: 51751161--51751583 Score: 557
Period size: 229 Copynumber: 1.9 Consensus size: 228
51751151 GCGCTTTACC
* * *
51751161 AAAAACGCCGTTAAATCCCCGAAAGCTCAGACAACGGCGTCGTTGGGCTTATGTCTTTTTGCGGC
1 AAAAACGCCGCTAAATCCCCGAAAGCCCAGAAAACGGCGTCGTTGGGCTTATGTCTTTTTGCGGC
* *
51751226 GCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCTAAAAAACGCCACTAAAT
66 GCTTTATCAAAAACGCCGCTAAAGCCCTGAGAATTAGCGGCGCTTCCTAAAAAACGCCACTAAAT
* * * *
51751291 CAGCGAAAGCTCAGAAAATAGCATCGTTAGGCTTAGTTTATTTAGCAGCGCTTCCCCAAAAACGT
131 CACCGAAAGCTCAGAAAACAGCATCATTAGGCTTAGTTTATTTAGCAGCACTTCCCCAAAAACGT
51751356 CGCTAAAGCCCTGAACATTAACAGCGCTTTTTA
196 CGCTAAAGCCCTGAACATTAACAGCGCTTTTTA
* * * *
51751389 AAAAACGCCGCTACATCCCCGAAAGCCCAGAAAACGGGGTCGTTGGGCTTAGGTTTTTTTTTGCG
1 AAAAACGCCGCTAAATCCCCGAAAGCCCAGAAAACGGCGTCGTTGGGCTTA--TGTCTTTTTGCG
* * *
51751454 GCGCTTTATC-AAAACGCTGTTAAAGCCCTG-GAAATTAGCGGCGCTTTCCT-AAAAACGCCGCT
64 GCGCTTTATCAAAAACGCCGCTAAAGCCCTGAG-AATTAGCGGCGC-TTCCTAAAAAACGCCACT
* * * * * * * *
51751516 AAATCCCCGAAAGCTCAGAAAACGGCGTCATTGGGCTTAGGTTT-TTTTGCGGCACTTTCCGAAA
127 AAATCACCGAAAGCTCAGAAAACAGCATCATTAGGCTTA-GTTTATTTAGCAGCACTTCCCCAAA
51751580 AACG
191 AACG
51751584 CTGCTAATAT
Statistics
Matches: 166, Mismatches: 24, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
228 47 0.28
229 91 0.55
230 28 0.17
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (228 bp):
AAAAACGCCGCTAAATCCCCGAAAGCCCAGAAAACGGCGTCGTTGGGCTTATGTCTTTTTGCGGC
GCTTTATCAAAAACGCCGCTAAAGCCCTGAGAATTAGCGGCGCTTCCTAAAAAACGCCACTAAAT
CACCGAAAGCTCAGAAAACAGCATCATTAGGCTTAGTTTATTTAGCAGCACTTCCCCAAAAACGT
CGCTAAAGCCCTGAACATTAACAGCGCTTTTTA
Found at i:51751865 original size:27 final size:26
Alignment explanation
Indices: 51751822--51751877 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 26
51751812 GATTTCGAGG
*
51751822 GGGGAAAAGAATAAGGAGAAAAGGTT
1 GGGGAAAAGAATAAGGAAAAAAGGTT
51751848 GGGGAAAA-AAGTAGAGGAAAAAAGGTT
1 GGGGAAAAGAA-TA-AGGAAAAAAGGTT
51751875 GGG
1 GGG
51751878 CTACAAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 2 0.07
26 10 0.37
27 15 0.56
ACGTcount: A:0.48, C:0.00, G:0.41, T:0.11
Consensus pattern (26 bp):
GGGGAAAAGAATAAGGAAAAAAGGTT
Found at i:51752335 original size:115 final size:113
Alignment explanation
Indices: 51752054--51752485 Score: 364
Period size: 115 Copynumber: 3.8 Consensus size: 113
51752044 TTTATCAACA
* * * * *
51752054 AGCGCCGCTAAATCCCTACATATTGCGGCGTTTGACCAAAAATACCACTTAAAACCTACAAA-AA
1 AGCGCCGCTAAATCCCAACCTATTGCGGCGTTTTACCAAAAACACCAC-TAAAA-AT-CAAATAA
***
51752118 CGAC-G-T-CGTTTTGATT-AAAACAAAATAACATTTTGCGGCGTTTTTTGGT
63 C-ACGGCTCCGTTTTGATTAAAAAC-AAATAACATTTTGCGGCGTTTTTACCT
* *
51752167 AGCGCCACTAAATCCCAACCTATT-CGGCGTTTTGA-CAAAAACGCCACTAAAAAATCAAATAAC
1 AGCGCCGCTAAATCCCAACCTATTGCGGCGTTTT-ACCAAAAACACCACT-AAAAATCAAATAAC
* *
51752230 ACGGCTCCGTTTTGATTAAAAACAAATTAACCTTTTGCGGTGTTTTTCACCT
64 ACGGCTCCGTTTTGATTAAAAACAAA-TAACATTTTGCGGCGTTTTT-ACCT
* * *
51752282 TGCGCCGCTAAATCCCGACCTATTGCGGCGTTTTACCAAAAACACCACTAAAAACTCAAATAAAA
1 AGCGCCGCTAAATCCCAACCTATTGCGGCGTTTTACCAAAAACACCACTAAAAA-TCAAATAACA
* * * * **
51752347 AGGCGCCGTTTTGA-TAAAAACAGAATAACTTTTTGCAGCGTTTTT-GGT
65 CGGCTCCGTTTTGATTAAAAACA-AATAACATTTTGCGGCGTTTTTACCT
* * * * * * * * *
51752395 GAAACGCCGCTACAGCCCAACATATTGCGGCATTTCACTAAAAACGCCACTAAGAAATCCAATAA
1 --AGCGCCGCTAAATCCCAACCTATTGCGGCGTTTTACCAAAAACACCACTAA-AAATCAAATAA
* *
51752460 AACGGCCCCGTTTTTG-TT-AAAACAAA
63 CACGGCTCCG-TTTTGATTAAAAACAAA
51752486 ATGATTTTTG
Statistics
Matches: 264, Mismatches: 37, Indels: 35
0.79 0.11 0.10
Matches are distributed among these distances:
110 6 0.02
111 6 0.02
112 23 0.09
113 36 0.14
114 25 0.09
115 115 0.44
116 53 0.20
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (113 bp):
AGCGCCGCTAAATCCCAACCTATTGCGGCGTTTTACCAAAAACACCACTAAAAATCAAATAACAC
GGCTCCGTTTTGATTAAAAACAAATAACATTTTGCGGCGTTTTTACCT
Found at i:51752865 original size:171 final size:171
Alignment explanation
Indices: 51752580--51752919 Score: 680
Period size: 171 Copynumber: 2.0 Consensus size: 171
51752570 GATACTACTA
51752580 AATATTTAAAGATTCAATCCAATTTTCTTCTTTGTTTCTATATTTGAAAGGTTTAATTATTTCTT
1 AATATTTAAAGATTCAATCCAATTTTCTTCTTTGTTTCTATATTTGAAAGGTTTAATTATTTCTT
51752645 AAATTCCTTTAAATTAAATTTGTTTTGTTCCACACTATATATTTAATTTGTAAAATTTTATAATT
66 AAATTCCTTTAAATTAAATTTGTTTTGTTCCACACTATATATTTAATTTGTAAAATTTTATAATT
51752710 GTGTATGAAAATAATTTTTAAATAATATGAAAACTCGATTC
131 GTGTATGAAAATAATTTTTAAATAATATGAAAACTCGATTC
51752751 AATATTTAAAGATTCAATCCAATTTTCTTCTTTGTTTCTATATTTGAAAGGTTTAATTATTTCTT
1 AATATTTAAAGATTCAATCCAATTTTCTTCTTTGTTTCTATATTTGAAAGGTTTAATTATTTCTT
51752816 AAATTCCTTTAAATTAAATTTGTTTTGTTCCACACTATATATTTAATTTGTAAAATTTTATAATT
66 AAATTCCTTTAAATTAAATTTGTTTTGTTCCACACTATATATTTAATTTGTAAAATTTTATAATT
51752881 GTGTATGAAAATAATTTTTAAATAATATGAAAACTCGAT
131 GTGTATGAAAATAATTTTTAAATAATATGAAAACTCGAT
51752920 CTAGATATGA
Statistics
Matches: 169, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
171 169 1.00
ACGTcount: A:0.35, C:0.09, G:0.08, T:0.48
Consensus pattern (171 bp):
AATATTTAAAGATTCAATCCAATTTTCTTCTTTGTTTCTATATTTGAAAGGTTTAATTATTTCTT
AAATTCCTTTAAATTAAATTTGTTTTGTTCCACACTATATATTTAATTTGTAAAATTTTATAATT
GTGTATGAAAATAATTTTTAAATAATATGAAAACTCGATTC
Found at i:51753275 original size:7 final size:7
Alignment explanation
Indices: 51753173--51753403 Score: 51
Period size: 7 Copynumber: 32.4 Consensus size: 7
51753163 TCATATCCCT
*
51753173 TAAACCC
1 TAAACCA
*
51753180 TAAATCA
1 TAAACCA
51753187 TTAAA-CA
1 -TAAACCA
51753194 TAAATCC-
1 TAAA-CCA
*
51753201 TGAACCA
1 TAAACCA
*
51753208 TAAACCCT
1 TAAA-CCA
*
51753216 TAAACCC
1 TAAACCA
* * *
51753223 CAACCCT
1 TAAACCA
*
51753230 TAAACCC
1 TAAACCA
**
51753237 TAAACTG
1 TAAACCA
51753244 TAAACCA
1 TAAACCA
*
51753251 TAATCCA
1 TAAACCA
*
51753258 TAATCCA
1 TAAACCA
*
51753265 TAAACCT
1 TAAACCA
51753272 TAAA--A
1 TAAACCA
*
51753277 TAGTAACTCC
1 TA--AAC-CA
*
51753287 TAAACCT
1 TAAACCA
*
51753294 TAAACCC
1 TAAACCA
51753301 TAAACCA
1 TAAACCA
* *
51753308 TAATCCC
1 TAAACCA
51753315 TAAACCCA
1 TAAA-CCA
*
51753323 TAATCCA
1 TAAACCA
* *
51753330 TGAACCT
1 TAAACCA
51753337 TAAA--A
1 TAAACCA
*
51753342 TAGTAACTCC
1 TA--AAC-CA
*
51753352 TAAACCT
1 TAAACCA
*
51753359 TAAACCC
1 TAAACCA
*
51753366 TAAACTA
1 TAAACCA
* *
51753373 TATACCC
1 TAAACCA
*
51753380 TAAACCC
1 TAAACCA
*
51753387 TAAACCC
1 TAAACCA
*
51753394 TAAACTA
1 TAAACCA
51753401 TAA
1 TAA
51753404 TGATAATTAA
Statistics
Matches: 163, Mismatches: 45, Indels: 32
0.68 0.19 0.13
Matches are distributed among these distances:
5 4 0.02
6 6 0.04
7 127 0.78
8 22 0.13
10 4 0.02
ACGTcount: A:0.45, C:0.30, G:0.02, T:0.23
Consensus pattern (7 bp):
TAAACCA
Found at i:51753304 original size:14 final size:14
Alignment explanation
Indices: 51753188--51753403 Score: 89
Period size: 14 Copynumber: 14.7 Consensus size: 14
51753178 CCTAAATCAT
*
51753188 TAAA-CATAAATCC
1 TAAACCATAAACCC
*
51753201 TGAACCATAAACCC
1 TAAACCATAAACCC
**
51753215 TTAAACC-CCAACCC
1 -TAAACCATAAACCC
* **
51753229 TTAAACCCTAAACTG
1 -TAAACCATAAACCC
* *
51753244 TAAACCATAATCCA
1 TAAACCATAAACCC
* *
51753258 TAATCCATAAACCT
1 TAAACCATAAACCC
51753272 TAAA--ATAGTAACTCC
1 TAAACCATA--AAC-CC
*
51753287 TAAACCTTAAACCC
1 TAAACCATAAACCC
*
51753301 TAAACCATAATCCC
1 TAAACCATAAACCC
* *
51753315 TAAACCCATAATCCA
1 TAAA-CCATAAACCC
*
51753330 TGAACCTTAAAATAGTAACTCC
1 TAAACC-----ATA--AAC-CC
*
51753352 TAAACCTTAAACCC
1 TAAACCATAAACCC
* *
51753366 TAAACTATATACCC
1 TAAACCATAAACCC
*
51753380 TAAACCCTAAACCC
1 TAAACCATAAACCC
*
51753394 TAAACTATAA
1 TAAACCATAA
51753404 TGATAATTAA
Statistics
Matches: 151, Mismatches: 35, Indels: 33
0.69 0.16 0.15
Matches are distributed among these distances:
12 3 0.02
13 3 0.02
14 99 0.66
15 31 0.21
17 4 0.03
19 3 0.02
21 2 0.01
22 6 0.04
ACGTcount: A:0.44, C:0.31, G:0.02, T:0.23
Consensus pattern (14 bp):
TAAACCATAAACCC
Found at i:51753336 original size:65 final size:65
Alignment explanation
Indices: 51753227--51753386 Score: 243
Period size: 65 Copynumber: 2.5 Consensus size: 65
51753217 AAACCCCAAC
* * * *
51753227 CCTTAAACCCTAAACTGTAAACCAT-AATCCATAATCCATAAACCTTAAAATAGTAACTCCTAAA
1 CCTTAAACCCTAAACTATAATCCCTAAACCCATAATCCATAAACCTTAAAATAGTAACTCCTAAA
* *
51753291 CCTTAAACCCTAAACCATAATCCCTAAACCCATAATCCATGAACCTTAAAATAGTAACTCCTAAA
1 CCTTAAACCCTAAACTATAATCCCTAAACCCATAATCCATAAACCTTAAAATAGTAACTCCTAAA
51753356 CCTTAAACCCTAAACTAT-ATACCCTAAACCC
1 CCTTAAACCCTAAACTATAAT-CCCTAAACCC
51753387 TAAACCCTAA
Statistics
Matches: 87, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
64 23 0.26
65 64 0.74
ACGTcount: A:0.43, C:0.31, G:0.03, T:0.24
Consensus pattern (65 bp):
CCTTAAACCCTAAACTATAATCCCTAAACCCATAATCCATAAACCTTAAAATAGTAACTCCTAAA
Found at i:51753340 original size:22 final size:22
Alignment explanation
Indices: 51753255--51753365 Score: 79
Period size: 22 Copynumber: 5.1 Consensus size: 22
51753245 AAACCATAAT
51753255 CCATAATCCATAAACCTTAAA-
1 CCATAATCCATAAACCTTAAAC
**
51753276 ATAGTAACTCC-TAAACCTTAAAC
1 CCA-TAA-TCCATAAACCTTAAAC
* * *
51753299 CC-TAAACCATAATCCCTAAAC
1 CCATAATCCATAAACCTTAAAC
*
51753320 CCATAATCCATGAACCTTAAA-
1 CCATAATCCATAAACCTTAAAC
**
51753341 ATAGTAACTCC-TAAACCTTAAAC
1 CCA-TAA-TCCATAAACCTTAAAC
51753364 CC
1 CC
51753366 TAAACTATAT
Statistics
Matches: 66, Mismatches: 16, Indels: 14
0.69 0.17 0.15
Matches are distributed among these distances:
20 2 0.03
21 17 0.26
22 41 0.62
23 6 0.09
ACGTcount: A:0.43, C:0.31, G:0.03, T:0.23
Consensus pattern (22 bp):
CCATAATCCATAAACCTTAAAC
Found at i:51756508 original size:20 final size:19
Alignment explanation
Indices: 51756485--51756533 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
51756475 TTTTACATTA
*
51756485 ATTTCTTTTTCTTTTTTTCT
1 ATTTCTTTTT-TTTCTTTCT
51756505 ATTTGCTTTTTTTTCTTTCT
1 ATTT-CTTTTTTTTCTTTCT
51756525 -TCTTCTTTT
1 AT-TTCTTTT
51756534 ATAATGTATG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 6 0.23
20 14 0.54
21 6 0.23
ACGTcount: A:0.04, C:0.16, G:0.02, T:0.78
Consensus pattern (19 bp):
ATTTCTTTTTTTTCTTTCT
Found at i:51768825 original size:9 final size:9
Alignment explanation
Indices: 51768811--51768847 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
51768801 TATAGTTTGA
51768811 TATTCGAAT
1 TATTCGAAT
51768820 TATTCGAAT
1 TATTCGAAT
*
51768829 TATTCGAGT
1 TATTCGAAT
51768838 TATTCGAAT
1 TATTCGAAT
51768847 T
1 T
51768848 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:51768918 original size:9 final size:9
Alignment explanation
Indices: 51768901--51768931 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
51768891 TCGAGTTGAT
51768901 TCGAATAAC
1 TCGAATAAC
*
51768910 TCGATTAAC
1 TCGAATAAC
51768919 TCGAATAAC
1 TCGAATAAC
51768928 TCGA
1 TCGA
51768932 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:51774596 original size:30 final size:30
Alignment explanation
Indices: 51774560--51774626 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
51774550 TCATCGCTAA
*
51774560 CCATTTTCTGTTAAAGACGTAACTA-AGTTG
1 CCATTTTCCGTTAAAGACGTAAC-AGAGTTG
** *
51774590 CCATTTTCCGTTGTAGACTTAACAGAGTTG
1 CCATTTTCCGTTAAAGACGTAACAGAGTTG
51774620 CCATTTT
1 CCATTTT
51774627 TCATCCTTCT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 1 0.03
30 31 0.97
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.39
Consensus pattern (30 bp):
CCATTTTCCGTTAAAGACGTAACAGAGTTG
Found at i:51775514 original size:30 final size:30
Alignment explanation
Indices: 51775478--51775545 Score: 91
Period size: 30 Copynumber: 2.3 Consensus size: 30
51775468 GAGAAGGATG
*
51775478 GAAAATGGAAACTTCGTTAAGTCTGTAACA
1 GAAAATGGAAACTCCGTTAAGTCTGTAACA
* * *
51775508 GAAAATGGCAACTCCGTTACGTTTGTAACA
1 GAAAATGGAAACTCCGTTAAGTCTGTAACA
*
51775538 GGAAATGG
1 GAAAATGG
51775546 TTAGTGGTGA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.25
Consensus pattern (30 bp):
GAAAATGGAAACTCCGTTAAGTCTGTAACA
Found at i:51780205 original size:76 final size:76
Alignment explanation
Indices: 51780113--51780277 Score: 258
Period size: 76 Copynumber: 2.2 Consensus size: 76
51780103 TATCTCCCGT
* * *
51780113 ACATAAAGGTATCGTCGATTTGTACCAGTGGCTTGTAGTATTGGAATGCCTGTCGACATTGCATC
1 ACATAAAGGTACCGTCGATTTGTACCAGGGGCTTGTAGTATTGGAATGCCTATCGACATTGCATC
51780178 AGATATCCCAC
66 AGATATCCCAC
* * *
51780189 ATATAAAGGTACCGTCGATTTGTACCAGGGGCTTGTAGTATTGGGATGCCTATCGACATTGCATT
1 ACATAAAGGTACCGTCGATTTGTACCAGGGGCTTGTAGTATTGGAATGCCTATCGACATTGCATC
**
51780254 AGATATCCCGT
66 AGATATCCCAC
51780265 ACATAAAGGTACC
1 ACATAAAGGTACC
51780278 ATCCTACGTG
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
76 80 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (76 bp):
ACATAAAGGTACCGTCGATTTGTACCAGGGGCTTGTAGTATTGGAATGCCTATCGACATTGCATC
AGATATCCCAC
Found at i:51780558 original size:17 final size:16
Alignment explanation
Indices: 51780536--51780577 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 16
51780526 TAAATAATTC
51780536 AAATATACGATTGGTT-T
1 AAATAT-CGATT-GTTGT
51780553 AAATAT-GATTGTTGT
1 AAATATCGATTGTTGT
51780568 AAATATCGAT
1 AAATATCGAT
51780578 GTAAGTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 3 0.13
15 11 0.48
16 3 0.13
17 6 0.26
ACGTcount: A:0.38, C:0.05, G:0.17, T:0.40
Consensus pattern (16 bp):
AAATATCGATTGTTGT
Found at i:51782823 original size:9 final size:9
Alignment explanation
Indices: 51782809--51782838 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
51782799 TCTATTAATG
*
51782809 AGATATTGA
1 AGATATTAA
51782818 AGATATTAA
1 AGATATTAA
51782827 AGATATTAA
1 AGATATTAA
51782836 AGA
1 AGA
51782839 ATCGTTCCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.17, T:0.30
Consensus pattern (9 bp):
AGATATTAA
Found at i:51788568 original size:27 final size:27
Alignment explanation
Indices: 51788538--51788591 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
51788528 TTAATTTATC
51788538 TTAATCTAATTCTAACATAATATAAAT
1 TTAATCTAATTCTAACATAATATAAAT
* *
51788565 TTAATTTAATTTTAACATAATATAAAT
1 TTAATCTAATTCTAACATAATATAAAT
51788592 CTGTCATAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.44
Consensus pattern (27 bp):
TTAATCTAATTCTAACATAATATAAAT
Found at i:51792270 original size:43 final size:43
Alignment explanation
Indices: 51792171--51792326 Score: 149
Period size: 43 Copynumber: 3.7 Consensus size: 43
51792161 TAGGGTTATC
* * *
51792171 GAGATTACGTGTAAGAACATATCTGGGATA-TGGAATCAATAT
1 GAGATTACGTGTAAGACCATATCTGGGACATTGGAATCGATAT
* *
51792213 GAGAATT-CGTGTAAGACCATGTCTGGGACATTGGGATCGATAT
1 GAG-ATTACGTGTAAGACCATATCTGGGACATTGGAATCGATAT
* * * * * *
51792256 GTGATTTCGTGTAAGACCA-AGGCCGGG-CTATTGGCATCGATAC
1 GAGATTACGTGTAAGACCATA-TCTGGGAC-ATTGGAATCGATAT
*
51792299 GAGATTACATGTAAGACCATATCTGGGA
1 GAGATTACGTGTAAGACCATATCTGGGA
51792327 TATGGCATTG
Statistics
Matches: 91, Mismatches: 16, Indels: 12
0.76 0.13 0.10
Matches are distributed among these distances:
42 27 0.30
43 63 0.69
44 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.27
Consensus pattern (43 bp):
GAGATTACGTGTAAGACCATATCTGGGACATTGGAATCGATAT
Found at i:51797428 original size:12 final size:12
Alignment explanation
Indices: 51797400--51797435 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
51797390 GCAAATAAGT
*
51797400 CATTTCTCATTTT
1 CATTTC-CATTTC
51797413 CATTTCCATTTC
1 CATTTCCATTTC
51797425 CATTTCCATTT
1 CATTTCCATTT
51797436 TGAGAAAATC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 16 0.73
13 6 0.27
ACGTcount: A:0.17, C:0.28, G:0.00, T:0.56
Consensus pattern (12 bp):
CATTTCCATTTC
Found at i:51797434 original size:18 final size:19
Alignment explanation
Indices: 51797400--51797435 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
51797390 GCAAATAAGT
*
51797400 CATTTCTCATTTTCATTTC
1 CATTTCTCATTTCCATTTC
51797419 CATTTC-CATTTCCATTT
1 CATTTCTCATTTCCATTT
51797436 TGAGAAAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.17, C:0.28, G:0.00, T:0.56
Consensus pattern (19 bp):
CATTTCTCATTTCCATTTC
Found at i:51809295 original size:188 final size:188
Alignment explanation
Indices: 51808977--51809351 Score: 633
Period size: 188 Copynumber: 2.0 Consensus size: 188
51808967 ACAGATTTTA
*
51808977 TTAACTATCTAGTGTGTAGAAAACTCCCATTGGGTGTCACAAGCCATAAAAAAGAAAGATTTATT
1 TTAACTATATAGTGTGTAGAAAACTCCCATTGGGTGTCACAAGCCATAAAAAAGAAAGATTTATT
* *
51809042 CATGACATAATGAAGTATCATTGGATCGAGCCGTATTTATTCAAAGTATGCAATGACAGTATCAT
66 CATGACATAATGAAGTATCATTGGAACGAGCCGTATTTATTCAAAGTATGCAATGACAATATCAT
51809107 TCAACTCTGTGTTCCGGAAGAAGAGATACTTTCAATCCTAAAGCATTGTCATGATGCG
131 TCAACTCTGTGTTCCGGAAGAAGAGATACTTTCAATCCTAAAGCATTGTCATGATGCG
* * *
51809165 TTAACTATATAGTGTGTAGAAAACTCCCATTGGGTGTCACAGGCCATAAAAAAGAAAGGTTTCTT
1 TTAACTATATAGTGTGTAGAAAACTCCCATTGGGTGTCACAAGCCATAAAAAAGAAAGATTTATT
* * *
51809230 TATGACATAATGAAGTATCATTGGAACGAGCTGTATTTATTCAAAGTATGCGATGACAATATCAT
66 CATGACATAATGAAGTATCATTGGAACGAGCCGTATTTATTCAAAGTATGCAATGACAATATCAT
* * * *
51809295 TCGACTTTGTGTTCCGGAAGAAGAGATGCTTTCAATCCTGAAGCATTGTCATGATGC
131 TCAACTCTGTGTTCCGGAAGAAGAGATACTTTCAATCCTAAAGCATTGTCATGATGC
51809352 TCCTTATAGA
Statistics
Matches: 174, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
188 174 1.00
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (188 bp):
TTAACTATATAGTGTGTAGAAAACTCCCATTGGGTGTCACAAGCCATAAAAAAGAAAGATTTATT
CATGACATAATGAAGTATCATTGGAACGAGCCGTATTTATTCAAAGTATGCAATGACAATATCAT
TCAACTCTGTGTTCCGGAAGAAGAGATACTTTCAATCCTAAAGCATTGTCATGATGCG
Found at i:51812252 original size:18 final size:18
Alignment explanation
Indices: 51812229--51812276 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
51812219 GTTGGTGCTA
*
51812229 CAGAAGAAGAAGTTGTTG
1 CAGAAGAAGAAGTTATTG
* *
51812247 CAGAAGAGGAAATTATTG
1 CAGAAGAAGAAGTTATTG
*
51812265 CTGAAGAAGAAG
1 CAGAAGAAGAAG
51812277 AAATTGCTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.44, C:0.06, G:0.31, T:0.19
Consensus pattern (18 bp):
CAGAAGAAGAAGTTATTG
Found at i:51812753 original size:17 final size:17
Alignment explanation
Indices: 51812728--51812764 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
51812718 AATAAGTATA
*
51812728 CATTGTCATTGCATTTT
1 CATTGTCATTACATTTT
*
51812745 CATTTTCATTACATTTT
1 CATTGTCATTACATTTT
51812762 CAT
1 CAT
51812765 GTTAGTGCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.22, C:0.19, G:0.05, T:0.54
Consensus pattern (17 bp):
CATTGTCATTACATTTT
Found at i:51816598 original size:47 final size:48
Alignment explanation
Indices: 51816547--51816645 Score: 146
Period size: 47 Copynumber: 2.1 Consensus size: 48
51816537 AACTAACATT
* * *
51816547 TGTTCTGGCAGCTTGACTGCAATTCTGGTGGC-TTGACCACGTATATC
1 TGTTCTGACAGCTTGACTACAATTCTGGTGGCTTTGACCACATATATC
* *
51816594 TGTTCTGACAGCTTGACTACAATTTTGGTGGCTTTGTCCACATATATC
1 TGTTCTGACAGCTTGACTACAATTCTGGTGGCTTTGACCACATATATC
51816642 TGTT
1 TGTT
51816646 GGTGTGTTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
47 29 0.63
48 17 0.37
ACGTcount: A:0.18, C:0.21, G:0.22, T:0.38
Consensus pattern (48 bp):
TGTTCTGACAGCTTGACTACAATTCTGGTGGCTTTGACCACATATATC
Found at i:51817673 original size:94 final size:94
Alignment explanation
Indices: 51817481--51817654 Score: 251
Period size: 94 Copynumber: 1.9 Consensus size: 94
51817471 GGGGGTTACA
* * * *
51817481 ACAACCTAAGTTTATTGATTTATGATCATGAACAATCTTCTTTGAGTTAGCTGATTTACAACCAC
1 ACAACCTAAGTTAATTGATTTACGATCATGAACAATCTTCTCTAAGTTAGCTGATTTACAACCAC
51817546 AACTCCAAATAGCTCTCTAATTTACAATC
66 AACTCCAAATAGCTCTCTAATTTACAATC
* * * * *
51817575 ACAACCTAAGTTAATTGATTTACGATCATGAACAATCTT-TCCTAAGTTAGTTGGTTTACGATCG
1 ACAACCTAAGTTAATTGATTTACGATCATGAACAATCTTCT-CTAAGTTAGCTGATTTACAACCA
51817639 CAACTCCAAATAGCTC
65 CAACTCCAAATAGCTC
51817655 ATTGATTTAT
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
93 1 0.01
94 69 0.99
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (94 bp):
ACAACCTAAGTTAATTGATTTACGATCATGAACAATCTTCTCTAAGTTAGCTGATTTACAACCAC
AACTCCAAATAGCTCTCTAATTTACAATC
Found at i:51817722 original size:130 final size:130
Alignment explanation
Indices: 51817565--51817835 Score: 346
Period size: 130 Copynumber: 2.1 Consensus size: 130
51817555 TAGCTCTCTA
* **
51817565 ATTTACAATCACAACCTAAGTTAATTGATTTACGATCATGAACAATCTT-TCCTAAGTTAGTTGG
1 ATTTACAATCACAACCTAAGTTAATTGATTTACGATCATGAACAATCTTCTCC-AAGTTAGCTAA
* * * * *
51817629 TTTACGATCGCAACTCCAAATAGCTCATTGATTTATGATCACAACTGATATTATTAAGACTTGTT
65 CTTACAATCGCAACTCCAAACAGCTCACTAATTTATGATCACAACTGATATTATTAAGACTTGTT
51817694 G
130 G
* * * * *
51817695 ATTTACGATCACAACCTAAGTTCATTGATTTACGATCATGAATAGTCTTCTCCGAGTTAGCTAAC
1 ATTTACAATCACAACCTAAGTTAATTGATTTACGATCATGAACAATCTTCTCCAAGTTAGCTAAC
** * * * *
51817760 TTACAATCGCAACTCCAAACAGCTTGCTAATTTATGATCACAATTGATATTATTAAGGCTCGCTG
66 TTACAATCGCAACTCCAAACAGCTCACTAATTTATGATCACAACTGATATTATTAAGACTTGTTG
*
51817825 ATTTATAATCA
1 ATTTACAATCA
51817836 TGAATAATCT
Statistics
Matches: 119, Mismatches: 21, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
130 116 0.97
131 3 0.03
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (130 bp):
ATTTACAATCACAACCTAAGTTAATTGATTTACGATCATGAACAATCTTCTCCAAGTTAGCTAAC
TTACAATCGCAACTCCAAACAGCTCACTAATTTATGATCACAACTGATATTATTAAGACTTGTTG
Found at i:51818804 original size:21 final size:20
Alignment explanation
Indices: 51818758--51818804 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 20
51818748 CCTCTAGCCA
51818758 TTTATTTTGATTCACCAATT
1 TTTATTTTGATTCACCAATT
*
51818778 TCTTATTTT-CTTCAACCAATT
1 T-TTATTTTGATTC-ACCAATT
51818799 GTTTAT
1 -TTTAT
51818805 ACAGTTCACG
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
20 4 0.17
21 18 0.78
22 1 0.04
ACGTcount: A:0.23, C:0.17, G:0.04, T:0.55
Consensus pattern (20 bp):
TTTATTTTGATTCACCAATT
Found at i:51819846 original size:20 final size:20
Alignment explanation
Indices: 51819783--51819846 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
51819773 TCGAGCCACT
* *
51819783 AGTATCGTAGATAAACTGCC
1 AGTATTGTAGATAAACTACC
* * * *
51819803 AATAATGCAGA-AAAGCTACT
1 AGTATTGTAGATAAA-CTACC
51819823 AGTATTGTAGATAAACTACC
1 AGTATTGTAGATAAACTACC
51819843 AGTA
1 AGTA
51819847 ATATGGTCAA
Statistics
Matches: 32, Mismatches: 10, Indels: 4
0.70 0.22 0.09
Matches are distributed among these distances:
19 3 0.09
20 26 0.81
21 3 0.09
ACGTcount: A:0.42, C:0.16, G:0.17, T:0.25
Consensus pattern (20 bp):
AGTATTGTAGATAAACTACC
Found at i:51839391 original size:23 final size:23
Alignment explanation
Indices: 51839365--51839418 Score: 76
Period size: 22 Copynumber: 2.4 Consensus size: 23
51839355 CAAACTAATC
*
51839365 CTCTCAAATTTCCTTTC-AATTT
1 CTCTCAAATTTCCTTCCAAATTT
51839387 GCTCTCAAA-TTCCTTCCAAATTT
1 -CTCTCAAATTTCCTTCCAAATTT
51839410 CTCTCAAAT
1 CTCTCAAAT
51839419 CTATATTTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 15 0.54
23 13 0.46
ACGTcount: A:0.26, C:0.30, G:0.02, T:0.43
Consensus pattern (23 bp):
CTCTCAAATTTCCTTCCAAATTT
Found at i:51839417 original size:11 final size:12
Alignment explanation
Indices: 51839363--51839418 Score: 57
Period size: 11 Copynumber: 4.9 Consensus size: 12
51839353 CACAAACTAA
51839363 TCCTCTCAAATT
1 TCCTCTCAAATT
*
51839375 TCCTTTC-AATT
1 TCCTCTCAAATT
*
51839386 TGCTCTCAAA-T
1 TCCTCTCAAATT
51839397 TCCT-TCCAAATT
1 TCCTCT-CAAATT
51839409 T-CTCTCAAAT
1 TCCTCTCAAAT
51839419 CTATATTTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
10 1 0.03
11 24 0.67
12 11 0.31
ACGTcount: A:0.25, C:0.30, G:0.02, T:0.43
Consensus pattern (12 bp):
TCCTCTCAAATT
Found at i:51841308 original size:18 final size:18
Alignment explanation
Indices: 51841281--51841315 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
51841271 CAGGTGCGTT
* *
51841281 TCCTAGCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
51841299 TCCTAACCCTTATATGT
1 TCCTAACCCTTATATGT
51841316 TTTCTTTTCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.29, G:0.09, T:0.43
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:51841925 original size:22 final size:21
Alignment explanation
Indices: 51841887--51842336 Score: 456
Period size: 22 Copynumber: 21.0 Consensus size: 21
51841877 TAAAACCCCT
*
51841887 AACCCTAA-CCTTTAATTGAAA
1 AACCCTAACCCTTAAATT-AAA
51841908 AACCCTAACCCTTAAATTAAA
1 AACCCTAACCCTTAAATTAAA
* *
51841929 AACACTAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAAATTAAA
*
51841951 AACCATAAACCCTTAAATTAAA
1 AACCCT-AACCCTTAAATTAAA
51841973 AACCCTAAACCCTTAAATTAAA
1 AACCCT-AACCCTTAAATTAAA
* * *
51841995 AACACTAAACCTTTAACTTAAA
1 AACCCT-AACCCTTAAATTAAA
* ** * *
51842017 AACCATAGTCCTTAACTTTAA
1 AACCCTAACCCTTAAATTAAA
*
51842038 AACCCTAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAAATTAAA
**
51842060 AACTATAACCCTTAAATT-AA
1 AACCCTAACCCTTAAATTAAA
* *
51842080 AACCCTAAACCCTTAACTTTAA
1 AACCCT-AACCCTTAAATTAAA
* *
51842102 AACCGTAACCCTTAAATAAAA
1 AACCCTAACCCTTAAATTAAA
*
51842123 AACCCTAATCCCTTAACTTAAA
1 AACCCTAA-CCCTTAAATTAAA
*
51842145 AACCCAAACCCTTAAATTAAA
1 AACCCTAACCCTTAAATTAAA
*
51842166 AACCCTAAACCATTAAATTAAA
1 AACCCT-AACCCTTAAATTAAA
*
51842188 AATCCTAAGCCCTTAAATTAAA
1 AACCCTAA-CCCTTAAATTAAA
* *
51842210 AATCCTAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAAATTAAA
*
51842232 AACCATAACCCTTAAATT-AA
1 AACCCTAACCCTTAAATTAAA
* * *
51842252 AACCCTAAACCTTTAACTTTAA
1 AACCCT-AACCCTTAAATTAAA
* * *
51842274 AATCGTAACCCTTAAATAAAA
1 AACCCTAACCCTTAAATTAAA
* *
51842295 AACCCTAACACTTAACTTAAA
1 AACCCTAACCCTTAAATTAAA
*
51842316 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAAATTAAA
51842337 TATAGTTTGA
Statistics
Matches: 360, Mismatches: 58, Indels: 22
0.82 0.13 0.05
Matches are distributed among these distances:
20 13 0.04
21 160 0.44
22 185 0.51
23 2 0.01
ACGTcount: A:0.47, C:0.26, G:0.01, T:0.25
Consensus pattern (21 bp):
AACCCTAACCCTTAAATTAAA
Found at i:51841954 original size:43 final size:43
Alignment explanation
Indices: 51841895--51842336 Score: 499
Period size: 43 Copynumber: 10.3 Consensus size: 43
51841885 CTAACCCTAA
* *
51841895 CCTTTAATTGAAAAACCCT-AACCCTTAAATTAAAAACACTAAAC
1 CCTTAAATT-AAAAACCCTAAACCCTTAACTTAAAAAC-CTAAAC
* * *
51841939 CCTTAACTTAAAAACCATAAACCCTTAAATTAAAAACCCTAAAC
1 CCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAA-CCTAAAC
* * **
51841983 CCTTAAATTAAAAACACTAAACCTTTAACTTAAAAACC-ATAGT
1 CCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAACCTA-AAC
* *
51842026 CCTTAACTTTAAAACCCTAAACCCTTAACTTAAAAA-CTATAAC
1 CCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAACCTA-AAC
*
51842069 CCTTAAATT-AAAACCCTAAACCCTTAACTTTAAAACCGT-AAC
1 CCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAACC-TAAAC
* * *
51842111 CCTTAAATAAAAAACCCTAATCCCTTAACTTAAAAACCCAAAC
1 CCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAACCTAAAC
* * *
51842154 CCTTAAATTAAAAACCCTAAACCATTAAATTAAAAATCCTAAGC
1 CCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAA-CCTAAAC
*
51842198 CCTTAAATTAAAAATCCTAAACCCTTAACTTAAAAACC-ATAAC
1 CCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAACCTA-AAC
* * *
51842241 CCTTAAATT-AAAACCCTAAACCTTTAACTTTAAAATCGT-AAC
1 CCTTAAATTAAAAACCCTAAACCCTTAAC-TTAAAAACCTAAAC
* *
51842283 CCTTAAATAAAAAACCCT-AACACTTAACTTAAAAACCCT-AAC
1 CCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAA-CCTAAAC
*
51842325 CCTTAACTTAAA
1 CCTTAAATTAAA
51842337 TATAGTTTGA
Statistics
Matches: 341, Mismatches: 43, Indels: 30
0.82 0.10 0.07
Matches are distributed among these distances:
41 6 0.02
42 90 0.26
43 144 0.42
44 100 0.29
45 1 0.00
ACGTcount: A:0.47, C:0.26, G:0.01, T:0.26
Consensus pattern (43 bp):
CCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAACCTAAAC
Found at i:51842313 original size:26 final size:26
Alignment explanation
Indices: 51842284--51842338 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 26
51842274 AATCGTAACC
51842284 CTTAAATAAAAAACCCTAACACTTAA
1 CTTAAATAAAAAACCCTAACACTTAA
*
51842310 C-T---T-AAAAACCCTAACCCTTAA
1 CTTAAATAAAAAACCCTAACACTTAA
51842331 CTTAAATA
1 CTTAAATA
51842339 TAGTTTGATA
Statistics
Matches: 23, Mismatches: 1, Indels: 10
0.68 0.03 0.29
Matches are distributed among these distances:
21 18 0.78
22 2 0.09
25 2 0.09
26 1 0.04
ACGTcount: A:0.49, C:0.25, G:0.00, T:0.25
Consensus pattern (26 bp):
CTTAAATAAAAAACCCTAACACTTAA
Found at i:51844321 original size:18 final size:18
Alignment explanation
Indices: 51844298--51844337 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
51844288 ACTTTTTTCT
51844298 CTAAAAACCCTAAAAATC
1 CTAAAAACCCTAAAAATC
*
51844316 CTAAAAACCTTAAAAATC
1 CTAAAAACCCTAAAAATC
51844334 CTAA
1 CTAA
51844338 CGTAGGAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.55, C:0.25, G:0.00, T:0.20
Consensus pattern (18 bp):
CTAAAAACCCTAAAAATC
Found at i:51844322 original size:10 final size:9
Alignment explanation
Indices: 51844298--51844337 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
51844288 ACTTTTTTCT
*
51844298 CTAAAAACC
1 CTAAAAATC
51844307 CTAAAAATC
1 CTAAAAATC
51844316 CTAAAAA-C
1 CTAAAAATC
51844324 CTTAAAAATC
1 C-TAAAAATC
51844334 CTAA
1 CTAA
51844338 CGTAGGAAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
8 2 0.07
9 24 0.86
10 2 0.07
ACGTcount: A:0.55, C:0.25, G:0.00, T:0.20
Consensus pattern (9 bp):
CTAAAAATC
Found at i:51844470 original size:40 final size:40
Alignment explanation
Indices: 51844392--51844470 Score: 104
Period size: 40 Copynumber: 2.0 Consensus size: 40
51844382 TGATGTGGAC
* * *
51844392 ACAAACCGCGCTTACGTAGACGCGATTTGCTGCCACATCA
1 ACAAACCACGCTGACGTAGACGCGATTTGCTGACACATCA
* * *
51844432 ACAAACCACGCTGACGTGGACGTGATTTGCTGATACATC
1 ACAAACCACGCTGACGTAGACGCGATTTGCTGACACATC
51844471 CCTTGACATC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
ACAAACCACGCTGACGTAGACGCGATTTGCTGACACATCA
Found at i:51856813 original size:15 final size:16
Alignment explanation
Indices: 51856785--51856814 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
51856775 GTTGGACTAA
51856785 ATTGAATGTGAGTTAT
1 ATTGAATGTGAGTTAT
51856801 ATTGAAT-TGAGTTA
1 ATTGAATGTGAGTTA
51856815 AATTTATTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.33, C:0.00, G:0.23, T:0.43
Consensus pattern (16 bp):
ATTGAATGTGAGTTAT
Found at i:51856839 original size:23 final size:23
Alignment explanation
Indices: 51856813--51856859 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
51856803 TGAATTGAGT
*
51856813 TAAATTTATTCGTAAAGATTCAG
1 TAAATTCATTCGTAAAGATTCAG
*
51856836 TAAATTCATTCGTACAGATTCAG
1 TAAATTCATTCGTAAAGATTCAG
51856859 T
1 T
51856860 TAGACATCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (23 bp):
TAAATTCATTCGTAAAGATTCAG
Found at i:51857151 original size:25 final size:24
Alignment explanation
Indices: 51857123--51857213 Score: 76
Period size: 25 Copynumber: 3.6 Consensus size: 24
51857113 TACCGATTTT
* *
51857123 AGCTCGTATGAGCTTACTGATATTG
1 AGCTCG-AGGAGCTTACTGATATTC
* * * *
51857148 AGCTCGCATGAGCTTACCGTTATTT
1 AGCTCG-AGGAGCTTACTGATATTC
51857173 AGCTCAGAGGAGCTTACT-ATTATTC
1 AGCTC-GAGGAGCTTACTGA-TATTC
51857198 AGCTCGGAGGAGCTTA
1 AGCTC-GAGGAGCTTA
51857214 TCGTTTATAC
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
25 54 0.98
26 1 0.02
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (24 bp):
AGCTCGAGGAGCTTACTGATATTC
Done.