Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 174 of 207
Found at i:53691432 original size:30 final size:31
Alignment explanation
Indices: 53691373--53691435 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
53691363 TTCCCTTGTG
53691373 AAAGTTTTATTAGTCCATTAATCATTATTCT
1 AAAGTTTTATTAGTCCATTAATCATTATTCT
53691404 AAAGTTTTATTAGTCCATTAAT-ATTATTCT
1 AAAGTTTTATTAGTCCATTAATCATTATTCT
53691434 AA
1 AA
53691436 TGCAACATGC
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 10 0.31
31 22 0.69
ACGTcount: A:0.35, C:0.11, G:0.06, T:0.48
Consensus pattern (31 bp):
AAAGTTTTATTAGTCCATTAATCATTATTCT
Found at i:53691968 original size:15 final size:14
Alignment explanation
Indices: 53691923--53691982 Score: 63
Period size: 15 Copynumber: 4.3 Consensus size: 14
53691913 CCTTTCCCTT
53691923 TTTTTC-TTTTTC-
1 TTTTTCTTTTTTCA
53691935 TTTTTCTTTTTCATCA
1 TTTTTCTTTTT--TCA
53691951 TTTTTCTTTTTTCGA
1 TTTTTCTTTTTTC-A
*
53691966 TTTTGCTTTTTT-A
1 TTTTTCTTTTTTCA
53691979 TTTT
1 TTTT
53691983 GATTCTAATT
Statistics
Matches: 42, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
12 6 0.14
13 9 0.21
14 2 0.05
15 14 0.33
16 11 0.26
ACGTcount: A:0.07, C:0.13, G:0.03, T:0.77
Consensus pattern (14 bp):
TTTTTCTTTTTTCA
Found at i:53696895 original size:18 final size:18
Alignment explanation
Indices: 53696872--53696934 Score: 58
Period size: 18 Copynumber: 3.4 Consensus size: 18
53696862 ATGTAAGTAT
53696872 AATAATAAATAATATAAG
1 AATAATAAATAATATAAG
* * *
53696890 AATAATTATTAATATGAAT
1 AATAATAAATAATAT-AAG
53696909 AATAAT-AATAA-ATAATG
1 AATAATAAATAATATAA-G
53696926 CAATAATAA
1 -AATAATAA
53696935 TGATGCAATA
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
16 2 0.06
17 2 0.06
18 23 0.64
19 9 0.25
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.32
Consensus pattern (18 bp):
AATAATAAATAATATAAG
Found at i:53696942 original size:14 final size:15
Alignment explanation
Indices: 53696912--53696945 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
53696902 TATGAATAAT
53696912 AATAATAAATAATGC
1 AATAATAAATAATGC
*
53696927 AATAAT-AATGATGC
1 AATAATAAATAATGC
53696941 AATAA
1 AATAA
53696946 CAATATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.59, C:0.06, G:0.09, T:0.26
Consensus pattern (15 bp):
AATAATAAATAATGC
Found at i:53705431 original size:12 final size:12
Alignment explanation
Indices: 53705414--53705438 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
53705404 AAATTGAGAC
53705414 TATCCCTTCAGA
1 TATCCCTTCAGA
53705426 TATCCCTTCAGA
1 TATCCCTTCAGA
53705438 T
1 T
53705439 TTTCTTGTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.32, G:0.08, T:0.36
Consensus pattern (12 bp):
TATCCCTTCAGA
Found at i:53706671 original size:122 final size:122
Alignment explanation
Indices: 53706454--53706831 Score: 418
Period size: 122 Copynumber: 3.0 Consensus size: 122
53706444 GTTGAAGAAT
* * * *
53706454 GTAGATTTGGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACAGTGAATCCTATCTTCCCAAGG
1 GTAGATCTAGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCCCAAGG
* * *
53706519 TAGTAGGGAAGCAGATTTAGGCTACTAATCTCATCTCCCTGAGCAGTAGTGGAGTAG
66 TAGTAGGGAAGCAGATTTAAGCCACTAATCTCATCTCCCTGAGCAGCAGTGGAGTAG
* *
53706576 GTAGATCTAGTCTCCCTAAGTAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCTCAAGG
1 GTAGATCTAGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCCCAAGG
* * *
53706641 TAGTAGGGAAACAGATTTAGGCTACTAATCTCATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAG
66 TAGTAGGGAAGCAGATTTAAGCCACTAATCTCATCTCCCTGAGCAGCAGT-G-G-A-G-T--AG
* * * ** * * *
53706705 AATGTAGATCTTGTCTCCCTAAGCAGTAGTGGAGTA-ATAAAAAAATGGCGAATCTTATCTTCCC
1 ---GTAGATCTAGTCTCCCTAAGCAGTAGCGGAGCAGAT-CGAAGACGGTGAATCTTATCTTCCC
* * * *
53706769 AAGGTAGTAGAGAAGCAGATTTAAGTCACTAATC-CTATCTCCCTAAGCAGCTGTGGAGTAG
62 AAGGTAGTAGGGAAGCAGATTTAAGCCACTAATCTC-ATCTCCCTGAGCAGCAGTGGAGTAG
53706830 GT
1 GT
53706832 TGAAGATTGC
Statistics
Matches: 219, Mismatches: 25, Indels: 24
0.82 0.09 0.09
Matches are distributed among these distances:
122 109 0.50
123 1 0.00
124 1 0.00
125 3 0.01
126 1 0.00
127 2 0.01
128 1 0.00
129 3 0.01
130 1 0.00
131 4 0.02
132 93 0.42
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (122 bp):
GTAGATCTAGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCCCAAGG
TAGTAGGGAAGCAGATTTAAGCCACTAATCTCATCTCCCTGAGCAGCAGTGGAGTAG
Found at i:53706723 original size:254 final size:253
Alignment explanation
Indices: 53706056--53706831 Score: 1017
Period size: 254 Copynumber: 3.0 Consensus size: 253
53706046 GTTGAATATT
* * * *
53706056 GTAGATCCTGTCTCTCTAAGCAGTAGCGGAGCAGATCGAAGATGTTGAGTCTTATCTTCCCAAAG
1 GTAGAT-CTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGG
* *
53706121 TAGTAGGGAAGCAGATTTAAGCCACCAATCCTATCTCCCTGAGCAGCAGCGGAGAGTAGGTTGAA
65 TAGTAGGGAAGCAGATTTAAGCCACTAATCCTATCTCCCTGAGCAGCAG-TG-GAGTAGGTTGAA
* * * *
53706186 GAATGTAGATCTTGTTTCCCTAAGTATTAGTGGAGCAGATCGAAGACGGTGAATCTTATCTTCCC
128 GAATGTAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGTGAATCTTATCTTCCC
* * *
53706251 AAGGTAGTAGGGAAGCAGATTTAAGCCACTAATCTTATCTCCCTGATCAGTAGTGGAGTAGGTTG
193 AAGGTAGTAGGGAAGCAGATTTAAGCTACTAATCTCATCTCCCTGAGCAGTAGT-G-G-A-G-T-
53706316 AAG
252 -AG
* * *
53706319 AATGTAGATCTGGTCTCCCTAAGCAGTAGCGGAGCAGATCAAAGATGGAGAATCTTATTTTCCCA
1 ---GTAGATCT-GTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCA
53706384 AGGTAGTAGGGAAGCAGATTTAAGCCACTAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGA
62 AGGTAGTAGGGAAGCAGATTTAAGCCACTAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGA
* *
53706449 AGAATGTAGAT-TTGGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACAGTGAATCCTATCTTC
127 AGAATGTAGATCTT-GTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGTGAATCTTATCTTC
*
53706513 CCAAGGTAGTAGGGAAGCAGATTTAGGCTACTAATCTCATCTCCCTGAGCAGTAGTGGAGTAG
191 CCAAGGTAGTAGGGAAGCAGATTTAAGCTACTAATCTCATCTCCCTGAGCAGTAGTGGAGTAG
* * *
53706576 GTAGATCTAGTCTCCCTAAGTAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCTCAAGG
1 GTAGATCT-GTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGG
* * *
53706641 TAGTAGGGAAACAGATTTAGGCTACTAAT-CTCATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAG
65 TAGTAGGGAAGCAGATTTAAGCCACTAATCCT-ATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAG
* * * * *
53706705 AATGTAGATCTTGTCTCCCTAAGCAGTAGTGGAGTA-AT-AAAAAAATGGCGAATCTTATCTTCC
129 AATGTAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACA--GTGAATCTTATCTTCC
* *
53706768 CAAGGTAGTAGAGAAGCAGATTTAAG-TCACTAATC-CTATCTCCCTAAGCAGCT-GTGGAGTAG
192 CAAGGTAGTAGGGAAGCAGATTTAAGCT-ACTAATCTC-ATCTCCCTGAGCAG-TAGTGGAGTAG
53706830 GT
1 GT
53706832 TGAAGATTGC
Statistics
Matches: 462, Mismatches: 39, Indels: 30
0.87 0.07 0.06
Matches are distributed among these distances:
252 4 0.01
253 6 0.01
254 216 0.47
255 3 0.01
257 2 0.00
259 1 0.00
260 1 0.00
261 1 0.00
262 1 0.00
263 3 0.01
264 118 0.26
265 3 0.01
266 103 0.22
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (253 bp):
GTAGATCTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGGT
AGTAGGGAAGCAGATTTAAGCCACTAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGAA
TGTAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGTGAATCTTATCTTCCCAAG
GTAGTAGGGAAGCAGATTTAAGCTACTAATCTCATCTCCCTGAGCAGTAGTGGAGTAG
Found at i:53706881 original size:386 final size:393
Alignment explanation
Indices: 53706033--53706865 Score: 1159
Period size: 386 Copynumber: 2.1 Consensus size: 393
53706023 CCCCTTGATT
* *
53706033 AGCAGTGGAGTAGGTTGAATATTGTAGATCCTGTCT-CTCTAAGCAGTAGCGGAGCAGATCGAAG
1 AGCAGTGGAGTAGGTTGAAGATTGTAGATCATGTCTCCT-TAAGCAGTAGCGGAGCAGATCGAAG
* * *
53706097 ATGTTGAGTCTTATCTTCCCAAAGTAGTAGGGAAGCAGATTTAAGCCACCAATCCTATCTCCCTG
65 AAGTTGAATCCTATCTTCCCAAAGTAGTAGGGAAGCAGATTTAAGCCACCAATCCTATCTCCCTG
* * *
53706162 AGCAGCAGCGGAGAGTAGGTTGAAGAATGTAGATCTTGTTTCCCTAAGTATTAGTGGAGCAGATC
130 AGCAGCAGCGGAGAGTAGGTT-AAGAATCTAGATC----TTCCCTAAGTAGTAGCGGAGCAGATC
* *
53706227 GAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAATCTTATCTC
190 GAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAACAGATTTAAGCCACTAATCTCATCTC
* *
53706292 CCTGATCAGTAGTGGAGTAGGTTGAAGAATGTAGATCTGGTCTCCCTAAGCAGTAGCGGAGCAGA
255 CCTGAGCAGCAGTGGAGTAGGTTGAAGAATGTAGATCTGGTCTCCCTAAGCAGTAGCGGAGCAGA
* * * *
53706357 TCAAAGATGGAGAATCTTATTTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAATCCTATC
320 TAAAAAATGGAGAATCTTATCTTCCCAAGGTAGTAGAGAAGCAGATTTAAGCCACTAATCCTATC
*
53706422 TCCCTGAGC
385 TCCCTAAGC
* * *
53706431 AGCAGTGGAGTAGGTTGAAGAATGTAGAT-TTGGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAG
1 AGCAGTGGAGTAGGTTGAAGATTGTAGATCAT-GTCTCCTTAAGCAGTAGCGGAGCAGATCGAAG
* * * *
53706495 ACAG-TGAATCCTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAGGCTACTAAT-CTCATCTCCC
65 A-AGTTGAATCCTATCTTCCCAAAGTAGTAGGGAAGCAGATTTAAGCCACCAATCCT-ATCTCCC
* *
53706558 TGAGCAGTAG-TG-GAGTAGG-T-AG-ATCTAG-TC-TCCCTAAGTAGTAGCGGAGCAGATCGAA
128 TGAGCAGCAGCGGAGAGTAGGTTAAGAATCTAGATCTTCCCTAAGTAGTAGCGGAGCAGATCGAA
* * *
53706616 GACGGTGAATCTTATCTTCTCAAGGTAGTAGGGAAACAGATTTAGGCTACTAATCTCATCTCCCT
193 GACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAACAGATTTAAGCCACTAATCTCATCTCCCT
* * *
53706681 GAGCAGCAGTGGAGTAGGTTGAAGAATGTAGATCTTGTCTCCCTAAGCAGTAGTGGAGTA-ATAA
258 GAGCAGCAGTGGAGTAGGTTGAAGAATGTAGATCTGGTCTCCCTAAGCAGTAGCGGAGCAGAT-A
* *
53706745 AAAAATGGCGAATCTTATCTTCCCAAGGTAGTAGAGAAGCAGATTTAAGTCACTAATCCTATCTC
322 AAAAATGGAGAATCTTATCTTCCCAAGGTAGTAGAGAAGCAGATTTAAGCCACTAATCCTATCTC
53706810 CCTAAGC
387 CCTAAGC
* * *
53706817 AGCTGTGGAGTAGGTTGAAGATTGCAGATCATGTCTCCTTGAGCAGTAG
1 AGCAGTGGAGTAGGTTGAAGATTGTAGATCATGTCTCCTTAAGCAGTAG
53706866 TAGAGCGGGT
Statistics
Matches: 390, Mismatches: 39, Indels: 24
0.86 0.09 0.05
Matches are distributed among these distances:
385 2 0.01
386 248 0.64
387 1 0.00
391 2 0.01
392 5 0.01
393 2 0.01
395 1 0.00
396 7 0.02
397 4 0.01
398 116 0.30
399 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.26
Consensus pattern (393 bp):
AGCAGTGGAGTAGGTTGAAGATTGTAGATCATGTCTCCTTAAGCAGTAGCGGAGCAGATCGAAGA
AGTTGAATCCTATCTTCCCAAAGTAGTAGGGAAGCAGATTTAAGCCACCAATCCTATCTCCCTGA
GCAGCAGCGGAGAGTAGGTTAAGAATCTAGATCTTCCCTAAGTAGTAGCGGAGCAGATCGAAGAC
GGTGAATCTTATCTTCCCAAGGTAGTAGGGAAACAGATTTAAGCCACTAATCTCATCTCCCTGAG
CAGCAGTGGAGTAGGTTGAAGAATGTAGATCTGGTCTCCCTAAGCAGTAGCGGAGCAGATAAAAA
ATGGAGAATCTTATCTTCCCAAGGTAGTAGAGAAGCAGATTTAAGCCACTAATCCTATCTCCCTA
AGC
Found at i:53706889 original size:132 final size:132
Alignment explanation
Indices: 53706033--53706865 Score: 1073
Period size: 132 Copynumber: 6.4 Consensus size: 132
53706023 CCCCTTGATT
* * * *
53706033 AGCAGTGGAGTAGGTTGAATATTGTAGATCCTGTCTCTCTAAGCAGTAGCGGAGCAGATCGAAGA
1 AGCAGTGGAGTAGGTTGAAGAATGTAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGA
* * * *
53706098 TGTTGAGTCTTATCTTCCCAAAGTAGTAGGGAAGCAGATTTAAGCCACCAATCCTATCTCCCTGA
66 TGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAATCCTATCTCCCTGA
53706163 GC
131 GC
* * * * *
53706165 AGCAGCGGAGAGTAGGTTGAAGAATGTAGATCTTGTTTCCCTAAGTATTAGTGGAGCAGATCGAA
1 AGCAG-TG-GAGTAGGTTGAAGAATGTAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAA
* *
53706230 GACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAATCTTATCTCCCT
64 GATGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAATCCTATCTCCCT
*
53706295 GATC
129 GAGC
* * *
53706299 AGTAGTGGAGTAGGTTGAAGAATGTAGATCTGGTCTCCCTAAGCAGTAGCGGAGCAGATCAAAGA
1 AGCAGTGGAGTAGGTTGAAGAATGTAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGA
* *
53706364 TGGAGAATCTTATTTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAATCCTATCTCCCTGA
66 TGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAATCCTATCTCCCTGA
53706429 GC
131 GC
53706431 AGCAGTGGAGTAGGTTGAAGAATGTAGAT-TTGGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAG
1 AGCAGTGGAGTAGGTTGAAGAATGTAGATCTT-GTCTCCCTAAGCAGTAGCGGAGCAGATCGAAG
** * * *
53706495 ACAGTGAATCCTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAGGCTACTAAT-CTCATCTCCCT
65 ATGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAATCCT-ATCTCCCT
53706559 GAGC
129 GAGC
* * *
53706563 AGTAGT-G-G-A-G-T--AG---GTAGATCTAGTCTCCCTAAGTAGTAGCGGAGCAGATCGAAGA
1 AGCAGTGGAGTAGGTTGAAGAATGTAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGA
* * * * *
53706618 CGGTGAATCTTATCTTCTCAAGGTAGTAGGGAAACAGATTTAGGCTACTAAT-CTCATCTCCCTG
66 TGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAATCCT-ATCTCCCTG
53706682 AGC
130 AGC
* * ** *
53706685 AGCAGTGGAGTAGGTTGAAGAATGTAGATCTTGTCTCCCTAAGCAGTAGTGGAGTA-ATAAAAAA
1 AGCAGTGGAGTAGGTTGAAGAATGTAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGAT-CGAAG
* * * *
53706749 ATGGCGAATCTTATCTTCCCAAGGTAGTAGAGAAGCAGATTTAAGTCACTAATCCTATCTCCCTA
65 ATGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAATCCTATCTCCCTG
53706814 AGC
130 AGC
* * * * * *
53706817 AGCTGTGGAGTAGGTTGAAGATTGCAGATCATGTCTCCTTGAGCAGTAG
1 AGCAGTGGAGTAGGTTGAAGAATGTAGATCTTGTCTCCCTAAGCAGTAG
53706866 TAGAGCGGGT
Statistics
Matches: 615, Mismatches: 69, Indels: 34
0.86 0.10 0.05
Matches are distributed among these distances:
122 106 0.17
123 2 0.00
124 1 0.00
125 3 0.00
126 1 0.00
127 2 0.00
128 1 0.00
129 3 0.00
130 1 0.00
131 6 0.01
132 371 0.60
133 4 0.01
134 114 0.19
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.26
Consensus pattern (132 bp):
AGCAGTGGAGTAGGTTGAAGAATGTAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGA
TGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAATCCTATCTCCCTGA
GC
Found at i:53706967 original size:51 final size:51
Alignment explanation
Indices: 53706891--53707005 Score: 133
Period size: 51 Copynumber: 2.3 Consensus size: 51
53706881 ATAGCGAATT
* * ** *
53706891 TTATTTCCCTGACGTTTCAATGGAACGGATTAAAGCTGAAGGCAGCAAATC
1 TTATTTCCCTGGCGTTTCAACGGAACAAATTAAAGCTGAAGGCAACAAATC
* *
53706942 TTATTTCCCTGGCGTTGT-AACGGAACAAATTAAAGTTGAAGGCAACGAATC
1 TTATTTCCCTGGCGTT-TCAACGGAACAAATTAAAGCTGAAGGCAACAAATC
* *
53706993 TCATCTCCCTGGC
1 TTATTTCCCTGGC
53707006 ATTTAAAATT
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
51 53 0.98
52 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.28
Consensus pattern (51 bp):
TTATTTCCCTGGCGTTTCAACGGAACAAATTAAAGCTGAAGGCAACAAATC
Found at i:53707718 original size:5 final size:5
Alignment explanation
Indices: 53707703--53707735 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
53707693 TATCTACTTA
53707703 TTTATT TTTAT TTTAT TTTA- TTTAT TTTAT TTT
1 TTTA-T TTTAT TTTAT TTTAT TTTAT TTTAT TTT
53707736 TGTTTGTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 4 0.15
5 18 0.69
6 4 0.15
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:53707728 original size:14 final size:14
Alignment explanation
Indices: 53707709--53707735 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
53707699 CTTATTTATT
53707709 TTTATTTTATTTTA
1 TTTATTTTATTTTA
53707723 TTTATTTTATTTT
1 TTTATTTTATTTT
53707736 TGTTTGTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTATTTTATTTTA
Found at i:53708502 original size:17 final size:16
Alignment explanation
Indices: 53708437--53708503 Score: 59
Period size: 16 Copynumber: 4.1 Consensus size: 16
53708427 CAAGGCATTT
*
53708437 TTTTATTTATCTATTA
1 TTTTATTTATTTATTA
53708453 TTTTATTTATTTACCTTA
1 TTTTATTTATTTA--TTA
*
53708471 CTTATT-TTCATTTATTA
1 -TT-TTATTTATTTATTA
53708488 -TTTATTTA-TTATTA
1 TTTTATTTATTTATTA
53708502 TT
1 TT
53708504 CCTTCATTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 13
0.72 0.05 0.22
Matches are distributed among these distances:
14 8 0.19
15 5 0.12
16 12 0.29
17 3 0.07
18 3 0.07
19 9 0.21
20 2 0.05
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTTATTTATTTATTA
Found at i:53708707 original size:3 final size:3
Alignment explanation
Indices: 53708699--53708787 Score: 74
Period size: 3 Copynumber: 30.0 Consensus size: 3
53708689 ATATCCGTTG
* * * * *
53708699 TTA TTA TTA TCA TTC TTA TCT- TCA TTA TTA CTA TTA CTA TTA TTA
1 TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
53708744 ATA TTA TTA TTA TTA TTA TTA CTA TTG TTA TTA -TA TTT TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
53708788 CAATTTATCT
Statistics
Matches: 65, Mismatches: 18, Indels: 6
0.73 0.20 0.07
Matches are distributed among these distances:
2 2 0.03
3 62 0.95
4 1 0.02
ACGTcount: A:0.30, C:0.08, G:0.01, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:53711538 original size:59 final size:59
Alignment explanation
Indices: 53711446--53712577 Score: 1674
Period size: 59 Copynumber: 19.2 Consensus size: 59
53711436 AAAGATGGGC
* * * **
53711446 CATATTTCATAATAATTATATGAGTAATTAATTAATTTTCAATTAATTAAATAAATAAT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* * * *
53711505 CATATTTTATAATAATTTTAGGAATAATTAATTAATTTTTGATTAATTAAATAAATAAT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* **
53711564 CAAATTTCATAATAATTCTACAAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* **
53711623 CAAATTTCATAATAATTCTACAAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* *
53711682 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTAGATTAATTAAATAAATATT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* * * *
53711741 CATATTTCATAATAATTATACGAATAATTAATTAATTTTTTATTAATTAAATAAATAAT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* * * * * *
53711800 CATATTTTATAATAGTTTTATGAATAATTAATTCATTTTAGATCAATTAAATAAATAAT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* *
53711859 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTAGATTAATTAAATAAATATT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* *
53711918 CATATTTCATAATAATTATATGAATAATTAATTAATTTTTGATTAATTAAATAAATAAT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* * * * *
53711977 CAT-TTTTATAATAATTTTAAGAATAATTAATTTATTTTAGATTAATTAAATAAGTAAT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* **
53712035 CATATTTCATAATAATTATATGAATAATTAATTTATTTTCAATTAATTAAATAAATAAT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* * * * *
53712094 CATATTTTATAATAATTTTATGAATAATTGATTTATTTTAGATTAGTTAAATAAATAAT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* *
53712153 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTAGATTAATTAAATAAATATT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* * * *
53712212 CATAATTCATAATAATTATACGAATAATTAA-TTATTTTTTATTAATTAAATAAATAAT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* * * *
53712270 CATATTTTATAATAATTTTATGAATAATTAATTTATTTTTGATTAATTAATTAAATAAC
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
*
53712329 CATATCTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* * *
53712388 CATATTTTATAATAATTGTAGGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
* * * * *
53712447 CATATTTAATAATAATTCTATGAATAATTAATTAATTGTCGATTAATTAAATAAATATT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
*
53712506 CATATTTCATAATAATTCTATGAATAATTTATTTATTTTTGATTAATTAAATAAATAAT
1 CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
53712565 CATATTTCATAAT
1 CATATTTCATAAT
53712578 GATTATCATA
Statistics
Matches: 972, Mismatches: 99, Indels: 4
0.90 0.09 0.00
Matches are distributed among these distances:
58 103 0.11
59 869 0.89
ACGTcount: A:0.45, C:0.05, G:0.04, T:0.47
Consensus pattern (59 bp):
CATATTTCATAATAATTCTATGAATAATTAATTTATTTTTGATTAATTAAATAAATAAT
Found at i:53712316 original size:19 final size:20
Alignment explanation
Indices: 53712284--53712321 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
53712274 TTTTATAATA
53712284 ATTTTATGAATAATTAATTT
1 ATTTTATGAATAATTAATTT
*
53712304 ATTTT-TGATTAATTAATT
1 ATTTTATGAATAATTAATT
53712322 AAATAACCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (20 bp):
ATTTTATGAATAATTAATTT
Found at i:53712435 original size:31 final size:29
Alignment explanation
Indices: 53711470--53712553 Score: 246
Period size: 32 Copynumber: 36.8 Consensus size: 29
53711460 ATTATATGAG
* **
53711470 TAATTAATTAATTTTCAATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* * *
53711497 TAAATAATCATATTTTAT-AATAATTTTAGGAA
1 TAATTAAT-TTATTTT-TGATTAA-TTTA-GAA
*
53711529 TAATTAATTAATTTTTGATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* ** * * *
53711556 TAAATAATCAAATTTCAT-AATAATTCTACAAA
1 TAATTAAT-TTATTT-TTGATTAATT-TA-GAA
53711588 TAATTAATTTATTTTTGATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* ** * * *
53711615 TAAATAATCAAATTTCAT-AATAATTCTACAAA
1 TAATTAAT-TTATTT-TTGATTAATT-TA-GAA
53711647 TAATTAATTTATTTTTGATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* * * *
53711674 TAAATAATCATATTTCAT-AATAATTCTATGAA
1 TAATTAAT-TTATTT-TTGATTAATT-TA-GAA
*
53711706 TAATTAATTTATTTTAGATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* * * *
53711733 TAAAT-ATTCATATTTCATAATAATTATACGAA
1 TAATTAATTTATTTTTGAT--TAATT-TA-GAA
* *
53711765 TAATTAATTAATTTTTTATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* * * *
53711792 TAAATAATCATATTTTAT-AATAGTTTTATGAA
1 TAATTAAT-TTATTTT-TGATTA-ATTTA-GAA
* * *
53711824 TAATTAATTCATTTTAGATCAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* * * *
53711851 TAAATAATCATATTTCAT-AATAATTCTATGAA
1 TAATTAAT-TTATTT-TTGATTAATT-TA-GAA
*
53711883 TAATTAATTTATTTTAGATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* * * *
53711910 TAAAT-ATTCATATTTCATAATAATTATATGAA
1 TAATTAATTTATTTTTGAT--TAATT-TA-GAA
*
53711942 TAATTAATTAATTTTTGATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* *
53711969 TAAATAA-TCATTTTT-ATAATAATTTTAAGAA
1 TAATTAATTTATTTTTGAT--TAA-TTT-AGAA
*
53712000 TAATTAATTTATTTTAGATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* * * *
53712027 TAAGTAATCATATTTCAT-AATAATTATATGAA
1 TAATTAAT-TTATTT-TTGATTAATT-TA-GAA
**
53712059 TAATTAATTTATTTTCAATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* * *
53712086 TAAATAATCATATTTTAT-AATAATTTTATGAA
1 TAATTAAT-TTATTTT-TGATTAA-TTTA-GAA
* * *
53712118 TAATTGATTTATTTTAGATT-AGTTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* * * *
53712145 TAAATAATCATATTTCAT-AATAATTCTATGAA
1 TAATTAAT-TTATTT-TTGATTAATT-TA-GAA
*
53712177 TAATTAATTTATTTTAGATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* * ** *
53712204 TAAAT-ATTCATAATTCATAATAATTATACGAA
1 TAATTAATTTATTTTTGAT--TAATT-TA-GAA
*
53712236 TAATTAA-TTATTTTTTATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* * *
53712262 TAAATAATCATATTTTAT-AATAATTTTATGAA
1 TAATTAAT-TTATTTT-TGATTAA-TTTA-GAA
*
53712294 TAATTAATTTATTTTTGATTAA-TTA-AT
1 TAATTAATTTATTTTTGATTAATTTAGAA
* ** ** *
53712321 TAAATAACCATATCTCAT-AATAATTCTATGAA
1 TAATTAA-TTTAT-TTTTGATTAATT-TA-GAA
53712353 TAATTAATTTATTTTTGATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* * *
53712380 TAAATAATCATATTTTAT-AATAATTGTAGGAA
1 TAATTAAT-TTATTTT-TGATTAATT-TA-GAA
53712412 TAATTAATTTATTTTTGATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* * * *
53712439 TAAATAATCATATTTAAT-AATAATTCTATGAA
1 TAATTAAT-TTATTT-TTGATTAATT-TA-GAA
* * *
53712471 TAATTAATTAATTGTCGATTAA-TTA-AA
1 TAATTAATTTATTTTTGATTAATTTAGAA
* * * *
53712498 TAAAT-ATTCATATTTCATAATAATTCTATGAA
1 TAATTAATTTATTTTTGAT--TAATT-TA-GAA
*
53712530 TAATTTATTTATTTTTGATTAATT
1 TAATTAATTTATTTTTGATTAATT
53712554 AAATAAATAA
Statistics
Matches: 755, Mismatches: 174, Indels: 252
0.64 0.15 0.21
Matches are distributed among these distances:
25 2 0.00
26 49 0.06
27 138 0.18
28 127 0.17
29 62 0.08
30 61 0.08
31 132 0.17
32 151 0.20
33 33 0.04
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (29 bp):
TAATTAATTTATTTTTGATTAATTTAGAA
Found at i:53718392 original size:66 final size:65
Alignment explanation
Indices: 53718278--53718415 Score: 161
Period size: 66 Copynumber: 2.1 Consensus size: 65
53718268 GCAAATTGCT
* * * *
53718278 CAACTTAAAGCGGAGGCAGCATCGAGAGAAGCAGAGGCTCAAACAAAATATAAAGAACTTCAGCT
1 CAACTTAAAACGGAGGCAGCAGCGAGAGAAGCAGAGGC-CAAACAAAATATAAAGAACTCCAACT
53718343 A
65 A
* * * * *
53718344 CAACTTAAAACGGAGGCAGCAGCTAGGGAAGCAGAGG-CAAGCAGAAAATATGACGAACTCCAAC
1 CAACTTAAAACGGAGGCAGCAGCGAGAGAAGCAGAGGCCAA--ACAAAATATAAAGAACTCCAAC
53718408 TA
64 TA
53718410 CAACTT
1 CAACTT
53718416 CAGAATATGA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
64 3 0.05
66 58 0.95
ACGTcount: A:0.43, C:0.21, G:0.23, T:0.13
Consensus pattern (65 bp):
CAACTTAAAACGGAGGCAGCAGCGAGAGAAGCAGAGGCCAAACAAAATATAAAGAACTCCAACTA
Found at i:53718819 original size:43 final size:43
Alignment explanation
Indices: 53718755--53718836 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
53718745 CAAAAACGCA
** *
53718755 TTTGTGGGAAAAGTGCCGCTAAAGGTCATGTTCTATAGCGACG
1 TTTGTGGGAAAAGCACAGCTAAAGGTCATGTTCTATAGCGACG
53718798 TTTGTGGGAAAAGCACAGCTAAAGGTCATGTTCTATAGC
1 TTTGTGGGAAAAGCACAGCTAAAGGTCATGTTCTATAGC
53718837 AGTGTTTTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (43 bp):
TTTGTGGGAAAAGCACAGCTAAAGGTCATGTTCTATAGCGACG
Found at i:53721616 original size:23 final size:22
Alignment explanation
Indices: 53721573--53721630 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
53721563 TAAGGGTATC
* *
53721573 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
53721594 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
53721617 TGCATATCATATCT
1 TACAAATCATATCT
53721631 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:53722200 original size:132 final size:132
Alignment explanation
Indices: 53721957--53725089 Score: 5055
Period size: 132 Copynumber: 23.9 Consensus size: 132
53721947 GCAACTTCAC
* * * **
53721957 GGAGATAAGA-CTTACAATTTTCAACCTATTCCACTACTGTCCAGGG-AGATATG-ATTACTGGC
1 GGAGATAAGATCTGA-AATCTTCAATCTATTCCACTGTTGTCCAGGGAAG-TA-GAATTACTGGC
* **
53722019 TTCAATGTACTCCACTTTAACCACAGGGAGGTAAAATCTACCATCTTCGATCTGCTCCACTACTG
63 TTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTG
53722084 CTTAG
128 CTTAG
* *
53722089 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTATTGTCCAAGGAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* *
53722154 AATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATTTTCGATCTGCTCCACTACTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
53722219 AG
131 AG
*
53722221 GGAGATAAGACCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* * *
53722286 AATGTACTCCACTGTAACCACAGCGAGGTAAAATCCGCCATCTTCCATCTGCTCCACTACTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
53722351 AG
131 AG
* *
53722353 GGAGATAAGACCTGAAATCTTCAATCTATTCCAATGTTGTCCAGGGAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* * *
53722418 AATATACTCCACTATAACCACAGGGAGGTAAAATCCTCTATCTTCGATCTGCTCCACTACTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
53722483 AG
131 AG
53722485 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCTA-GGAAGTAGAATTACTGGCTT
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCC-AGGGAAGTAGAATTACTGGCTT
*
53722549 CAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTTCACTACTGCT
65 CAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCT
53722614 TAG
130 TAG
* * *
53722617 GGAGATAAGCTCTGAAATCTTCAATCTATTCTATTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* * *
53722682 AATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATTTTCGATCTGCTCCACTACTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
53722747 AG
131 AG
* * *
53722749 GGAGATAAGACCTAAAATCTTCAATCTATTCCACTGTTGTCTAGGGAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* **
53722814 AATGTACTCCACTATAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTAATCCACTACTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
53722879 AG
131 AG
* * *
53722881 GGAGATAAGATCTAAAATCTTCAATCTATTCCACTGTTGTTCAGGGAAGTAGAATTACTGGCTTT
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
*
53722946 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACAGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
53723011 AG
131 AG
* *
53723013 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTATTGCCCAGGGAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* *
53723078 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCACCATCTTCGATCTGTTCCACTACTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
53723143 AG
131 AG
*
53723145 GGAGATAAGACCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* * * *
53723210 AATGTACTCCACAATAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGATCCACTACAGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
53723275 AG
131 AG
* *
53723277 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTATTGCCCAGGGAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* *
53723342 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCACCATCTTCGATCTGTTCCACTACTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
53723407 AG
131 AG
*
53723409 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTATTG-CCA-GGAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* * *
53723472 AATGTACTCCACTA-CA-CACAGGGAGGTAAAATCCACCATCTTCGATCTGTTCCACTACTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
53723535 AG
131 AG
* * *
53723537 GGAGATAAAATCTGAAATTTTCAATCTATTCCACTATTGTCCAGGGAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* *
53723602 AATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATTTTCGATCTGCTCCACTACTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
53723667 AG
131 AG
* *
53723669 GGAGATAAGACCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGACTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* * * *
53723734 AATGTACTCCACTGTAACCACAGCGAGGTAAAATCCACCATCTTCCATCTGCTCCACTACTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
53723799 AG
131 AG
*
53723801 GGAGATAAGA-CATGAAATCTTCAATCTATTCCACTGTTGTCCAGGAAAGTAGAATTACTGGCTT
1 GGAGATAAGATC-TGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTT
* * *
53723865 CAATATACTCCACTATAACCACAGGGAGGTAAAATCCTCTATCTTCGATCTGCTCCACTACTGCT
65 CAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCT
53723930 TAG
130 TAG
53723933 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCTA-GGAAGTAGAATTACTGGCTT
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCC-AGGGAAGTAGAATTACTGGCTT
* *
53723997 CAATGTACTCCACTATAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCACTACTGCT
65 CAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCT
53724062 TAG
130 TAG
* * * * *
53724065 GGAGATAAGCTCTGAAATCTTCAATCTATTCTATTGTTGTCCAAGAAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* *
53724130 AATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
53724195 AG
131 AG
53724197 GGA-ATAAGA-CTGAAATCTTCAATCTATTCCA-TGTTGT-CA-GGAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* *
53724257 AATGTACTCCACTATAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGATCCACTACTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
53724322 AG
131 AG
* * *
53724324 GGAGATAAGATCTAAAATCTTCAATCTATTCCACTGTTGTTCAGGGAAGTAGAATTACTGGCTTT
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* *
53724389 AATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACAGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
53724454 AG
131 AG
*
53724456 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTATTGTCCAGGGAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* *
53724521 AATGTACTCCACTATAACCACAGGGAGGT-AAAT-C-TCATCTTCGATCTGTTCCACTACTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
53724583 AG
131 AG
*
53724585 GGAG-TAAGACCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACT-GC-TC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* *
53724647 AATGTACTCCACTAATAACCACA-GGAGGTAAAATCCGCCATCTTCGATCTGATCCACTATTGCT
66 AATGTACTCCACT-ATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCT
53724711 TA-
130 TAG
53724713 GGAGATAAGATCTGAAATCTTCAAT-TATTCCACTGTGTGT-CA-GGAAGTAGAATTACTGGCTT
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGT-TGTCCAGGGAAGTAGAATTACTGGCTT
* * * * *
53724775 TAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACAGTT
65 CAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCT
53724840 TAG
130 TAG
*
53724843 GGAGATAAGATCTGAAATCTTCAATCTATT-CACTGTTGCCCAGGGAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* *
53724907 AATGTACTCCACTATAACCATA-GGAGGTAAAATCTGCCATCTTCGATCTGC-CCACTACTGCTT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
53724970 AG
131 AG
53724972 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
1 GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
* * **
53725037 AATGTACTCCATTGTAACCACAGGGAGGTAAAATTTGCCATCTTCGATCTGCT
66 AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCT
53725090 TCGTTGTCAA
Statistics
Matches: 2802, Mismatches: 165, Indels: 68
0.92 0.05 0.02
Matches are distributed among these distances:
126 21 0.01
127 116 0.04
128 174 0.06
129 206 0.07
130 209 0.07
131 91 0.03
132 1977 0.71
133 8 0.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (132 bp):
GGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTC
AATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTT
AG
Found at i:53722782 original size:44 final size:44
Alignment explanation
Indices: 53722734--53722915 Score: 113
Period size: 44 Copynumber: 4.1 Consensus size: 44
53722724 TTCGATCTGC
*
53722734 TCCACTACTGCTTAGGGAGATAAGACCTAAAATCTTCAATCTAT
1 TCCACTACTGCTTAGGGAGATAAGATCTAAAATCTTCAATCTAT
** **** * *
53722778 TCCACTGTTG-TCTAGGGA-AGT-AGAAT-TACTGGCTTCAATGTAC
1 TCCACTACTGCT-TAGGGAGA-TAAG-ATCTAAAATCTTCAATCTAT
* ** * * *** * *
53722821 TCCACTA-TAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTAA
1 TCCACTACT--GCTTAGGGAGATAAGATCTAAAATCTTCAATCTAT
53722866 TCCACTACTGCTTAGGGAGATAAGATCTAAAATCTTCAATCTAT
1 TCCACTACTGCTTAGGGAGATAAGATCTAAAATCTTCAATCTAT
53722910 TCCACT
1 TCCACT
53722916 GTTGTTCAGG
Statistics
Matches: 96, Mismatches: 32, Indels: 20
0.65 0.22 0.14
Matches are distributed among these distances:
42 1 0.01
43 21 0.22
44 55 0.57
45 18 0.19
46 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (44 bp):
TCCACTACTGCTTAGGGAGATAAGATCTAAAATCTTCAATCTAT
Found at i:53723059 original size:44 final size:44
Alignment explanation
Indices: 53723011--53723583 Score: 181
Period size: 44 Copynumber: 13.1 Consensus size: 44
53723001 ACTACAGCTT
53723011 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTATTGCCC
1 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTATTGCCC
* * * **
53723055 AGGGA-AGT-AGAATTACTG---GCTTCAATGTACTCCACTATAACCAC
1 AGGGAGA-TAAG-A-T-CTGAAATCTTCAATCTATTCCACTATTGCC-C
* * * * * * * **
53723099 AGGGAGGTAAAATC-CACCATCTTCGATCTGTTCCACTACTGCTT
1 AGGGAGATAAGATCTGA-AATCTTCAATCTATTCCACTATTGCCC
* * *
53723143 AGGGAGATAAGACCTGAAATCTTCAATCTATTCCACTGTTGTCC
1 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTATTGCCC
* * * * **
53723187 AGGGA-AGT-AGAATTACTG---GCTTCAATGTACTCCACAATAACCAC
1 AGGGAGA-TAAG-A-T-CTGAAATCTTCAATCTATTCCACTATTGCC-C
* * ** * ** **
53723231 AGGGAGGTAAAATCTGCCATCTTCGATCTGA-TCCACTACAGCTT
1 AGGGAGATAAGATCTGAAATCTTCAATCT-ATTCCACTATTGCCC
53723275 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTATTGCCC
1 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTATTGCCC
* * * **
53723319 AGGGA-AGT-AGAATTACTG---GCTTCAATGTACTCCACTATAACCAC
1 AGGGAGA-TAAG-A-T-CTGAAATCTTCAATCTATTCCACTATTGCC-C
* * * * * * * **
53723363 AGGGAGGTAAAATC-CACCATCTTCGATCTGTTCCACTACTGCTT
1 AGGGAGATAAGATCTGA-AATCTTCAATCTATTCCACTATTGCCC
53723407 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTATTG-CC
1 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTATTGCCC
* * * * ** *
53723450 AGGAAG-T-AGAATTACTG---GCTTCAATGTACTCCACTA-CACAC
1 AGGGAGATAAG-A-T-CTGAAATCTTCAATCTATTCCACTATTGCCC
* * * * * * * **
53723491 AGGGAGGTAAAATC-CACCATCTTCGATCTGTTCCACTACTGCTT
1 AGGGAGATAAGATCTGA-AATCTTCAATCTATTCCACTATTGCCC
* * *
53723535 AGGGAGATAAAATCTGAAATTTTCAATCTATTCCACTATTGTCC
1 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTATTGCCC
53723579 AGGGA
1 AGGGA
53723584 AGTAGAATTA
Statistics
Matches: 367, Mismatches: 114, Indels: 96
0.64 0.20 0.17
Matches are distributed among these distances:
40 1 0.00
41 25 0.07
42 9 0.02
43 88 0.24
44 181 0.49
45 53 0.14
46 10 0.03
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (44 bp):
AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTATTGCCC
Found at i:53723385 original size:88 final size:88
Alignment explanation
Indices: 53723029--53723400 Score: 229
Period size: 88 Copynumber: 4.2 Consensus size: 88
53723019 AAGATCTGAA
*
53723029 ATCTTCAATCTATTCCACTATTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATA
1 ATCTTCAATCTATTCCACTATTGCCCAGGGAAGTAGAATTACTGGCTTCAATCTACTCCACTATA
53723094 ACCACAGGGAGGTAAAATCCACC
66 ACCACAGGGAGGTAAAATCCACC
* * * ** * * * *
53723117 ATCTTCGATCTGTTCCACTACTGCTTAGGG-AG-ATAA-GACCTGAAATCTTCAATCTATTCCAC
1 ATCTTCAATCTATTCCACTATTGCCCAGGGAAGTAGAATTA-CTG---GCTTCAATCTACTCCAC
* *** * * * *
53723179 TGTTGTC-CAGGGAAGTAGAAT-TACT
62 TATAACCACAGGGAGGTAAAATCCACC
** * * * ** * * * *** *
53723204 GGCTTCAATGTACTCCACAATAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGA-TCCACT
1 ATCTTCAATCTATTCCACTATTGCC-CAGGGAAGTAGAAT-TACTGGCTTCAATCT-ACTCCACT
* * ** * * * *
53723268 A-CAGCTTAGGGAGATAAGATCTGA-A
63 ATAACCACAGGGAGGTAAAATC-CACC
*
53723293 ATCTTCAATCTATTCCACTATTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATA
1 ATCTTCAATCTATTCCACTATTGCCCAGGGAAGTAGAATTACTGGCTTCAATCTACTCCACTATA
53723358 ACCACAGGGAGGTAAAATCCACC
66 ACCACAGGGAGGTAAAATCCACC
* *
53723381 ATCTTCGATCTGTTCCACTA
1 ATCTTCAATCTATTCCACTA
53723401 CTGCTTAGGG
Statistics
Matches: 195, Mismatches: 73, Indels: 32
0.65 0.24 0.11
Matches are distributed among these distances:
85 1 0.01
86 7 0.04
87 36 0.18
88 109 0.56
89 37 0.19
90 4 0.02
91 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (88 bp):
ATCTTCAATCTATTCCACTATTGCCCAGGGAAGTAGAATTACTGGCTTCAATCTACTCCACTATA
ACCACAGGGAGGTAAAATCCACC
Found at i:53727926 original size:267 final size:262
Alignment explanation
Indices: 53727426--53727929 Score: 727
Period size: 267 Copynumber: 1.9 Consensus size: 262
53727416 CACATGGGCC
*
53727426 GGTAAAATCCGCCATCTCGATCTGCTCCACTACAGCTTAGGGAGTAAGTCTGAAATTCTTAAATC
1 GGTAAAATCCGCCATCTCGATCTGATCCACTACAGCTTAGGGAGTAAGTCTGAAATTCTTAAATC
53727491 TATTCCACTATTGTCCAGGGAAGTAGAATTAGCTGGCTTCAATGTACTCCACTATACCACAGGGA
66 TATTCCACTATTGTCCAGGGAAGTAGAATTAGCTGGCTTCAATGTACTCCACTATACCACAGGGA
* * * *
53727556 GGTAAATCTACCATCTTCGATCTGTTCCACTACTGCTTAGGGAGCTAAGACCTGAAATCTTCAAT
131 GGTAAATCCACCATCTTCGATCTGCTCCACTACAGCTTAGGGAGATAAGACCTGAAATCTTCAAT
*
53727621 CTATTCCACTGTTGTCCAGGGAGTAGAATTACTGGCTTCAATGTACTCCACTATAGAACCACAGG
196 CTATTCCACTATTGTCCAGGGAGTAGAATTACTGGCTTCAATGTACTCCACTATAGAACCACAGG
53727686 GA
261 GA
*
53727688 GGTAAAATCCGCCATCTTCGATCTGATCCACTATATTGCTTAGGGAGATTAAGATCTGAAA-TCT
1 GGTAAAATCCGCCATC-TCGATCTGATCCACTACA--GCTTAGGGAG--TAAG-TCTGAAATTCT
* * * *
53727752 TCAATTTATTCCACTGTTGT-CA-GGAAGTAAGAATTA-CTGGCTT-AATGTACTCCACTGTAAC
60 TAAATCTATTCCACTATTGTCCAGGGAAGT-AGAATTAGCTGGCTTCAATGTACTCCACTAT-AC
*
53727813 CACAGGGAGGTAAAATCCACCATCTTCGATCTTGCTCCACTACAG-TTAGGG-GATAACGATCTG
123 CACAGGGAGGT-AAATCCACCATCTTCGATC-TGCTCCACTACAGCTTAGGGAGATAA-GACCTG
53727876 AAATCTTCAATCTTATTCCACTATTG-CCAGGGAAGTAGAATTACTGGCTTCAAT
185 AAATCTTCAATC-TATTCCACTATTGTCCAGGG-AGTAGAATTACTGGCTTCAAT
53727930 AACCTCCACT
Statistics
Matches: 217, Mismatches: 12, Indels: 21
0.87 0.05 0.08
Matches are distributed among these distances:
262 16 0.07
263 16 0.07
264 14 0.06
265 40 0.18
266 56 0.26
267 68 0.31
268 7 0.03
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (262 bp):
GGTAAAATCCGCCATCTCGATCTGATCCACTACAGCTTAGGGAGTAAGTCTGAAATTCTTAAATC
TATTCCACTATTGTCCAGGGAAGTAGAATTAGCTGGCTTCAATGTACTCCACTATACCACAGGGA
GGTAAATCCACCATCTTCGATCTGCTCCACTACAGCTTAGGGAGATAAGACCTGAAATCTTCAAT
CTATTCCACTATTGTCCAGGGAGTAGAATTACTGGCTTCAATGTACTCCACTATAGAACCACAGG
GA
Found at i:53728492 original size:257 final size:263
Alignment explanation
Indices: 53727945--53730399 Score: 4120
Period size: 257 Copynumber: 9.5 Consensus size: 263
53727935 CCACTAATAA
* *
53727945 TGCTTCACTACTGCTTAGGGAGATAAGCTCTGAAATCTTCAATCTA----ACTGTTGTCCA-GGA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
*
53728005 AGTAGAATTACTGGC-TCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCCCAT-TTCGAT
66 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCGCCATCTTCGAT
53728068 CTGCTCCACTACTGCTTA-GGAGATAAGA-CTGAAATCTTCAATCTATTCCACTGTTGTCCCAGG
131 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGT-CCAGG
*
53728131 GAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCTG-CATCTTC
195 GAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTC
53728195 GATC
260 GATC
* *
53728199 TGCTCCACTACTGCTTA-GGAGAT-AGATCTAAAATCTTCAATCTATTCCACT-TTGTTCAGGGA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
*
53728261 AGTAGAATTACTGGCTTTAATGTACTCCACTATAACCACAGGGAGGTAAAATCGCCATC-TCGAT
66 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCGCCATCTTCGAT
53728325 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTG-CCAGGG
131 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGG
*
53728389 AAGTAGAATTACT-GCTTCAATGTACTCCACTATAACCACAGGGAGGT-AAATCCACCA-CTTCG
196 AAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCG
53728451 ATC
261 ATC
*
53728454 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTGCA-GGA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
53728518 AGTAGAATTA-TGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCTGCCATCTTCGA
66 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATC-GCCATCTTCGA
53728582 TCTG-TCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGG
130 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGG
*
53728646 GAAGTAGAATTACTGGCTT-AATGTACTCCACTATAACCACAGGGAGGTAAAATCCACCATCTTC
195 GAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTC
53728710 GATC
260 GATC
53728714 TG-TCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGT-CA-GGA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
*
53728776 AGTAGAATTACTGGCTTCAATGTACTCCACTAT-ACCACA-GGAGGTAAAATCCACCATCTTCGA
66 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAAT-CGCCATCTTCGA
53728839 TCTG-TCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCA-G
130 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGG
53728902 GAAGTAGAATTACTGGCTTCAATGTACTCCACT-TAACCACAGGGAGGTAAAATCCCGCCATCTT
195 GAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAAT-CCGCCATCTT
53728966 CGATC
259 CGATC
53728971 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTG-CCAGGGA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
*
53729035 AGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGT-AAATC-CCATC-TCGAT
66 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCGCCATCTTCGAT
53729097 CTGCTCCACTACTGCTTAGGGAGATAAGA-CTGAAATCTTCAATCTATTCCACTGTTGTCCAGGG
131 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGG
*
53729161 AAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAAATCC-TCATCTTC
196 AAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGT-AAAATCCGCCATCTTC
53729225 GATC
260 GATC
53729229 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTG-CCA--GA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
53729291 AGTAGAATTACTGGCTTCAATGTACTCC-CTATAACCACAGGGAGGTAAAATCTGCCATCTTCGA
66 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATC-GCCATCTTCGA
53729355 TCTGCT--ACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGT-CA--
130 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGG
*
53729415 GAAG-AGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCC-ACATCTTC
195 GAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTC
53729478 GATC
260 GATC
*
53729482 TGCTCCACTACTGCTTAGGGAGATAAGA-CTG-AATCTTCAATCTATTCCACT-TTG-CTAGGGA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
53729543 AGTA-AATTACT-GCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCGCCATCTTCGAT
66 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCGCCATCTTCGAT
53729606 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGG
131 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGG
*
53729671 AAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCG
196 AAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCG
53729736 ATC
261 ATC
*
53729739 TGCTCCACTACAGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
*
53729804 AGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATC-CCATCTTCGAT
66 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCGCCATCTTCGAT
*
53729868 CTGCTCCACTACTGCTTAGGGAG-TAAGACCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGG
131 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGG
53729932 AAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCG
196 AAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCG
53729997 ATC
261 ATC
* * * * *
53730000 TGATCCACTATTGCTTAGGGAGATAAGATCTGAAATCTTCAATTTATTCCACTGTTGTTCAGGAA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
* * *
53730065 AGTAGAATTACTGGCTTTAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGA
66 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAAT-CGCCATCTTCGA
* * * *
53730130 TCTGCTCCACTACAGTTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTATTGCCCAGG
130 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGG
* *
53730195 GAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCATAGGGAGGTAAAATCTGCCATCTTC
195 GAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTC
53730260 GATC
260 GATC
*
53730264 TGCTCCACTACTGCTTAGGGAGATAAGATATGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
* * *
53730329 AGTAGAATTACTGGCTTCAATGTACTCCATTGTAACCACAGGGAGGTAAAATTTGCCATCTTCGA
66 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAA-TCGCCATCTTCGA
53730394 TCTGCT
130 TCTGCT
53730400 TCGTTGTCAA
Statistics
Matches: 2095, Mismatches: 49, Indels: 104
0.93 0.02 0.05
Matches are distributed among these distances:
250 37 0.02
251 51 0.02
252 80 0.04
253 54 0.03
254 60 0.03
255 61 0.03
256 229 0.11
257 396 0.19
258 322 0.15
259 202 0.10
260 28 0.01
261 233 0.11
262 42 0.02
263 71 0.03
264 228 0.11
265 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (263 bp):
TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCGCCATCTTCGAT
CTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGG
AAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCG
ATC
Found at i:53729645 original size:44 final size:43
Alignment explanation
Indices: 53729472--53729659 Score: 124
Period size: 44 Copynumber: 4.4 Consensus size: 43
53729462 TAAAATCCAC
* *
53729472 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA-CTGA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGA
* *
53729514 ATCTTCAATCTATTCCACT-TTGC-TAGGGA-AGTAA-AT-T-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGA-TAAGATCTGA
* * * ** * * *
53729552 CTGCTTCAATGTACTCCACTA-TAACCACAGGGAGGTAAAATC-GCC
1 AT-CTTCAATCTACTCCACTACT--GCTTAGGGAGATAAGATCTG-A
* *
53729597 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTG-A
*
53729641 ATCTTCAATCTATTCCACT
1 ATCTTCAATCTACTCCACT
53729660 GTTGTCCAGG
Statistics
Matches: 107, Mismatches: 25, Indels: 26
0.68 0.16 0.16
Matches are distributed among these distances:
38 2 0.02
39 19 0.18
40 9 0.08
41 4 0.04
42 24 0.22
43 15 0.14
44 32 0.30
45 2 0.02
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.30
Consensus pattern (43 bp):
ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGA
Found at i:53729671 original size:44 final size:45
Alignment explanation
Indices: 53729623--53729803 Score: 99
Period size: 44 Copynumber: 4.1 Consensus size: 45
53729613 ACTACTGCTT
* *
53729623 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTC-C
1 AGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTGTAGTCAC
* * **
53729667 AGGGA-AGT-AGAATTACTG---GCTTCAATGTACTCCACTGTAACCAC
1 AGGGAGA-TAAG-A-T-CTGAAATCTTCAATCTACTCCACTGTAGTCAC
* * * ** * * ** **
53729711 AGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACAG-CTT
1 AGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTGTAGTCAC
* *
53729755 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTC-C
1 AGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTGTAGTCAC
53729799 AGGGA
1 AGGGA
53729804 AGTAGAATTA
Statistics
Matches: 96, Mismatches: 30, Indels: 22
0.65 0.20 0.15
Matches are distributed among these distances:
42 2 0.02
43 22 0.23
44 51 0.53
45 18 0.19
46 3 0.03
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (45 bp):
AGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTGTAGTCAC
Found at i:53729759 original size:132 final size:132
Alignment explanation
Indices: 53727945--53730399 Score: 4112
Period size: 132 Copynumber: 19.0 Consensus size: 132
53727935 CCACTAATAA
* *
53727945 TGCTTCACTACTGCTTAGGGAGATAAGCTCTGAAATCTTCAATCTA----ACTGTTGTCCA-GGA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
53728005 AGTAGAATTACTGGC-TCAATGTACTCCACTATAACCACAGGGAGGTAAAATCC-CCAT-TTCGA
66 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGA
53728067 TC
131 TC
53728069 TGCTCCACTACTGCTTA-GGAGATAAGA-CTGAAATCTTCAATCTATTCCACTGTTGTCCCAGGG
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGT-CCAGGG
*
53728132 AAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCTG-CATCTTCG
65 AAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCG
53728196 ATC
130 ATC
* *
53728199 TGCTCCACTACTGCTTA-GGAGAT-AGATCTAAAATCTTCAATCTATTCCACT-TTGTTCAGGGA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
*
53728261 AGTAGAATTACTGGCTTTAATGTACTCCACTATAACCACAGGGAGGTAAAAT-CGCCATC-TCGA
66 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGA
53728324 TC
131 TC
53728326 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTG-CCAGGGA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
*
53728390 AGTAGAATTACT-GCTTCAATGTACTCCACTATAACCACAGGGAGGT-AAATCCACCA-CTTCGA
66 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGA
53728452 TC
131 TC
*
53728454 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTGCA-GGA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
*
53728518 AGTAGAATTA-TGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCTGCCATCTTCGA
66 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGA
53728582 TC
131 TC
53728584 TG-TCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
*
53728648 AGTAGAATTACTGGCTT-AATGTACTCCACTATAACCACAGGGAGGTAAAATCCACCATCTTCGA
66 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGA
53728712 TC
131 TC
53728714 TG-TCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGT-CA-GGA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
*
53728776 AGTAGAATTACTGGCTTCAATGTACTCCACTAT-ACCACA-GGAGGTAAAATCCACCATCTTCGA
66 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGA
53728839 TC
131 TC
53728841 TG-TCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCA-GGA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
53728904 AGTAGAATTACTGGCTTCAATGTACTCCACT-TAACCACAGGGAGGTAAAATCCCGCCATCTTCG
66 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAAT-CCGCCATCTTCG
53728968 ATC
130 ATC
53728971 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTG-CCAGGGA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
*
53729035 AGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGT-AAAT-C-CCATC-TCGA
66 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGA
53729096 TC
131 TC
53729098 TGCTCCACTACTGCTTAGGGAGATAAGA-CTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
*
53729162 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAAATCC-TCATCTTCG
66 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGT-AAAATCCGCCATCTTCG
53729226 ATC
130 ATC
53729229 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTG-CCA--GA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
*
53729291 AGTAGAATTACTGGCTTCAATGTACTCC-CTATAACCACAGGGAGGTAAAATCTGCCATCTTCGA
66 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGA
53729355 TC
131 TC
53729357 TGCT--ACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGT-CA--GA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
*
53729417 AG-AGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCC-ACATCTTCGA
66 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGA
53729480 TC
131 TC
*
53729482 TGCTCCACTACTGCTTAGGGAGATAAGA-CTG-AATCTTCAATCTATTCCACT-TTG-CTAGGGA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
53729543 AGTA-AATTACT-GCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAAT-CGCCATCTTCGA
66 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGA
53729605 TC
131 TC
53729607 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
*
53729672 AGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGA
66 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGA
53729737 TC
131 TC
*
53729739 TGCTCCACTACAGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
*
53729804 AGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAAT-C-CCATCTTCGA
66 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGA
53729867 TC
131 TC
*
53729869 TGCTCCACTACTGCTTAGGGAG-TAAGACCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
53729933 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGA
66 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGA
53729998 TC
131 TC
* * * * *
53730000 TGATCCACTATTGCTTAGGGAGATAAGATCTGAAATCTTCAATTTATTCCACTGTTGTTCAGGAA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
* * *
53730065 AGTAGAATTACTGGCTTTAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGA
66 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGA
53730130 TC
131 TC
* * * *
53730132 TGCTCCACTACAGTTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTATTGCCCAGGGA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
* *
53730197 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCATAGGGAGGTAAAATCTGCCATCTTCGA
66 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGA
53730262 TC
131 TC
*
53730264 TGCTCCACTACTGCTTAGGGAGATAAGATATGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
* * **
53730329 AGTAGAATTACTGGCTTCAATGTACTCCATTGTAACCACAGGGAGGTAAAATTTGCCATCTTCGA
66 AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGA
53730394 TC
131 TC
53730396 TGCT
1 TGCT
53730400 TCGTTGTCAA
Statistics
Matches: 2211, Mismatches: 64, Indels: 104
0.93 0.03 0.04
Matches are distributed among these distances:
122 17 0.01
123 9 0.00
124 21 0.01
125 138 0.06
126 134 0.06
127 253 0.11
128 341 0.15
129 324 0.15
130 248 0.11
131 206 0.09
132 520 0.24
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (132 bp):
TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGA
AGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGA
TC
Found at i:53730196 original size:44 final size:44
Alignment explanation
Indices: 53730148--53730328 Score: 111
Period size: 44 Copynumber: 4.1 Consensus size: 44
53730138 ACTACAGTTT
*
53730148 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTATTGCCC
1 AGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTATTGCCC
* * ** *
53730192 AGGGA-AGT-AGAATTACTG---GCTTCAATGTACTCCACTATAACCAT
1 AGGGAGA-TAAG-A-T-CTGAAATCTTCAATCTACTCCACTATTGCC-C
* * ** * * * **
53730236 AGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTGCTT
1 AGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTATTGCCC
* * * *
53730280 AGGGAGATAAGATATGAAATCTTCAATCTATTCCACTGTTGTCC
1 AGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTATTGCCC
53730324 AGGGA
1 AGGGA
53730329 AGTAGAATTA
Statistics
Matches: 98, Mismatches: 29, Indels: 20
0.67 0.20 0.14
Matches are distributed among these distances:
42 3 0.03
43 23 0.23
44 51 0.52
45 18 0.18
46 3 0.03
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (44 bp):
AGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTATTGCCC
Found at i:53734355 original size:24 final size:24
Alignment explanation
Indices: 53734327--53734372 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
53734317 ATCATTTTTT
* *
53734327 GCTGCTCATTCATTTGCTTTTGAA
1 GCTGCTCATGCATTTCCTTTTGAA
*
53734351 GCTGCTCCTGCATTTCCTTTTG
1 GCTGCTCATGCATTTCCTTTTG
53734373 GGATTGTTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.11, C:0.26, G:0.17, T:0.46
Consensus pattern (24 bp):
GCTGCTCATGCATTTCCTTTTGAA
Found at i:53737268 original size:23 final size:22
Alignment explanation
Indices: 53737225--53737282 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
53737215 AACGGGTATC
* *
53737225 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
53737246 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
53737269 TGCATATCATATCT
1 TACAAATCATATCT
53737283 AAGATTATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:53737285 original size:19 final size:19
Alignment explanation
Indices: 53737238--53737371 Score: 160
Period size: 19 Copynumber: 6.8 Consensus size: 19
53737228 AAATTAAATC
*
53737238 TCTAAGATTACAAAATCATA
1 TCTAAGATTAC-ATATCATA
*
53737258 TCTTCTAAGATTGCATATCATA
1 ---TCTAAGATTACATATCATA
*
53737280 TCTAAGATTATATATCATA
1 TCTAAGATTACATATCATA
*
53737299 TCTAAGATTATATATCATA
1 TCTAAGATTACATATCATA
* *
53737318 TCTAAGATTATATATTATA
1 TCTAAGATTACATATCATA
*
53737337 TCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATA
*
53737356 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
53737372 CCTGAAGATT
Statistics
Matches: 103, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
19 86 0.83
22 7 0.07
23 10 0.10
ACGTcount: A:0.40, C:0.13, G:0.07, T:0.40
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:53737314 original size:38 final size:38
Alignment explanation
Indices: 53737261--53737364 Score: 181
Period size: 38 Copynumber: 2.7 Consensus size: 38
53737251 AATCATATCT
53737261 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
** *
53737299 TCTAAGATTATATATCATATCTAAGATTATATATTATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
53737337 TCTAAGATTGCATATCATATCTAAGATT
1 TCTAAGATTGCATATCATATCTAAGATT
53737365 GCATATCCCT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 61 1.00
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.41
Consensus pattern (38 bp):
TCTAAGATTGCATATCATATCTAAGATTATATATCATA
Found at i:53738483 original size:19 final size:20
Alignment explanation
Indices: 53738461--53738513 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
53738451 TAATTATTTC
53738461 AAATATCATTATTTTTA-GT-
1 AAATAT-ATTATTTTTATGTG
53738480 AAATATATT-TTTTATATGTG
1 AAATATATTATTTT-TATGTG
53738500 AAATAT-TTATTTTT
1 AAATATATTATTTTT
53738514 CTTCCATATC
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
17 4 0.13
18 5 0.17
19 11 0.37
20 10 0.33
ACGTcount: A:0.36, C:0.02, G:0.06, T:0.57
Consensus pattern (20 bp):
AAATATATTATTTTTATGTG
Found at i:53738729 original size:103 final size:103
Alignment explanation
Indices: 53738581--53738773 Score: 275
Period size: 106 Copynumber: 1.9 Consensus size: 103
53738571 GAAATAATTA
* *
53738581 TTTGAAATATTTCACATATAAAAATAATAATATTTGAAATTATTA-TT-TTTTATAATATTAGAA
1 TTTGAAATATTTCACATATAAAAATAATAATATTTGAAATAATTATTTATTTTATAATATTAAAA
* *
53738644 TTTATCATACCCGCAATATAGGTGAAAATATAATGATC
66 TTTAACATACCCACAATATAGGTGAAAATATAATGATC
*
53738682 TTTGAAATAATTT-ACATATAAAATAATAATGATATTTGAAATAATTATTTGATTTTATAATATT
1 TTTGAAAT-ATTTCACATAT-AAA-AATAATAATATTTGAAATAATTATTT-ATTTTATAATATT
*
53738746 AAAATTTAACATACCCACAATGTAGGTG
62 AAAATTTAACATACCCACAATATAGGTG
53738774 GAAAGAATAA
Statistics
Matches: 80, Mismatches: 6, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
101 14 0.17
102 7 0.09
103 21 0.26
104 2 0.03
106 36 0.45
ACGTcount: A:0.44, C:0.07, G:0.08, T:0.40
Consensus pattern (103 bp):
TTTGAAATATTTCACATATAAAAATAATAATATTTGAAATAATTATTTATTTTATAATATTAAAA
TTTAACATACCCACAATATAGGTGAAAATATAATGATC
Found at i:53764697 original size:68 final size:67
Alignment explanation
Indices: 53764585--53764716 Score: 221
Period size: 68 Copynumber: 2.0 Consensus size: 67
53764575 AAGCATATAT
53764585 TTAGCCAATTTGTTTTAGGGTTCATAAGAAATTAGGGATCTTTTTAGTTTGTTTGATTTTTGTGT
1 TTAGCCAATTTGTTTTAGGGTTCATAAGAAATTAGGGATCTTTTTAGTTTGTTTGA-TTTTGTGT
53764650 CAG
65 CAG
* *
53764653 TTAGCCAATTTGTTTTTGGGTTCATAAGAAATT-GGAGATTTTTTTAGTTTGTTTGATTTTGTGT
1 TTAGCCAATTTGTTTTAGGGTTCATAAGAAATTAGG-GATCTTTTTAGTTTGTTTGATTTTGTGT
53764717 TGGCTGGAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
67 10 0.16
68 51 0.84
ACGTcount: A:0.21, C:0.06, G:0.22, T:0.51
Consensus pattern (67 bp):
TTAGCCAATTTGTTTTAGGGTTCATAAGAAATTAGGGATCTTTTTAGTTTGTTTGATTTTGTGTC
AG
Found at i:53771803 original size:23 final size:24
Alignment explanation
Indices: 53771777--53771831 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
53771767 TTTAAGTATA
*
53771777 AATTTTTTTAAAAATATAT-TTTT
1 AATTTTTTGAAAAATATATATTTT
* *
53771800 AATTTATTGAAAAATATTTATTTT
1 AATTTTTTGAAAAATATATATTTT
*
53771824 AATGTTTT
1 AATTTTTT
53771832 AAGTGTATTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 16 0.62
24 10 0.38
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (24 bp):
AATTTTTTGAAAAATATATATTTT
Found at i:53772558 original size:96 final size:96
Alignment explanation
Indices: 53772450--53772679 Score: 286
Period size: 96 Copynumber: 2.4 Consensus size: 96
53772440 TGTTTATTGT
*
53772450 TTTTTAA-TAAAAAT-AAATTAAATTAGGGTTTAGGGTTACTTGAGTAATTTAATTAAAAATTAT
1 TTTTTAAGTAAAAATCAAA-TAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAAAAATT-T
**
53772513 TTA-AAAATTAGATAAGGGTTTAGAGTTAAGGG
64 TTATAAAATTAGATAAGGGTTTAGAGTTAAGAA
* * * **
53772545 TTTTTAAGGAAAAATCAAATAAACTAGGGTTCAGGGTTACTTGAGTAAATTAATTATCAATTTTT
1 TTTTTAAGTAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAAAAATTTTT
* * * *
53772610 ATAAAATTTGATTAGGGTTTAGGGTTTAGAA
66 ATAAAATTAGATAAGGGTTTAGAGTTAAGAA
* *
53772641 TTTTTAAGTAAAAACTCAAATAAATTAGAGTTTGGGGTT
1 TTTTTAAGTAAAAA-TCAAATAAATTAGGGTTTAGGGTT
53772680 TAGGGTTACT
Statistics
Matches: 114, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
95 11 0.10
96 80 0.70
97 23 0.20
ACGTcount: A:0.40, C:0.03, G:0.18, T:0.39
Consensus pattern (96 bp):
TTTTTAAGTAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAAAAATTTTT
ATAAAATTAGATAAGGGTTTAGAGTTAAGAA
Found at i:53772710 original size:16 final size:16
Alignment explanation
Indices: 53772689--53772741 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
53772679 TTAGGGTTAC
53772689 TTAATTAAATTATTTG
1 TTAATTAAATTATTTG
*
53772705 TTAATTTAAAGTTA---C
1 TTAA-TTAAA-TTATTTG
53772720 TTAATTAAATTATTTG
1 TTAATTAAATTATTTG
53772736 TTAATT
1 TTAATT
53772742 TAAAGAAGCT
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
13 3 0.10
14 5 0.17
15 4 0.13
16 10 0.33
17 5 0.17
18 3 0.10
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.55
Consensus pattern (16 bp):
TTAATTAAATTATTTG
Found at i:53772721 original size:31 final size:31
Alignment explanation
Indices: 53772684--53772746 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
53772674 GGGGTTTAGG
53772684 GTTACTTAATTAAATTATTTGTTAATTTAAA
1 GTTACTTAATTAAATTATTTGTTAATTTAAA
53772715 GTTACTTAATTAAATTATTTGTTAATTTAAA
1 GTTACTTAATTAAATTATTTGTTAATTTAAA
53772746 G
1 G
53772747 AAGCTCTCAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.38, C:0.03, G:0.08, T:0.51
Consensus pattern (31 bp):
GTTACTTAATTAAATTATTTGTTAATTTAAA
Found at i:53772979 original size:126 final size:126
Alignment explanation
Indices: 53772743--53773159 Score: 710
Period size: 126 Copynumber: 3.3 Consensus size: 126
53772733 TTGTTAATTT
*
53772743 AAAGAAGCTCTCACGTGGACGCGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGAC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGAC
** * *
53772808 GTTTCTGAGCAAATAGTGTCAAAAACACTTTAAACAGGATTCTTTGTCAGCAGAAGTACTG
66 GTTTCTGAGCAAATAGTGTCAAAAACGTTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
* *
53772869 AAAGAAGCTCCCACGTGGACGTGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCAAGTAGAC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGAC
*
53772934 GTTTCTGAGCAAATAGTGTCAAAAACGTTTTAAGCAAGG-TGCTTTGTCAGTAGAAGTACTG
66 GTTTCTGAGCAAATAGTGTCAAAAACGTTTTAAGC-AGGATGCTTTGTCAGCAGAAGTACTG
* *
53772995 AAAGAAGCTCCCACGTGGACACGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGAT
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGAC
53773060 GTTTCTGAGCAAATAGTGTCAAAAACGTTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
66 GTTTCTGAGCAAATAGTGTCAAAAACGTTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
* *
53773121 GAAGAAGCTCCCACGTGGACGCGCTTTTTCTACAGTAGC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGC
53773160 GCATGTTTGT
Statistics
Matches: 273, Mismatches: 16, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
125 3 0.01
126 267 0.98
127 3 0.01
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (126 bp):
AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGAC
GTTTCTGAGCAAATAGTGTCAAAAACGTTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
Found at i:53775644 original size:17 final size:17
Alignment explanation
Indices: 53775622--53775659 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
53775612 TAAGGTAGTG
53775622 CAAGAAATTAACAAGTC
1 CAAGAAATTAACAAGTC
53775639 CAAGAAATTAACAAGTC
1 CAAGAAATTAACAAGTC
53775656 CAAG
1 CAAG
53775660 GTGCGAGTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.53, C:0.18, G:0.13, T:0.16
Consensus pattern (17 bp):
CAAGAAATTAACAAGTC
Found at i:53776895 original size:18 final size:18
Alignment explanation
Indices: 53776854--53776896 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
53776844 GGCTAGAAAA
* * *
53776854 AGGAGACATATAAGGGTT
1 AGGATACATAAAAGGGCT
*
53776872 ATGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
53776890 AGGATAC
1 AGGATAC
53776897 GCACCTGGCA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.09, G:0.28, T:0.21
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:53778555 original size:22 final size:22
Alignment explanation
Indices: 53778530--53778580 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
53778520 AGCACTAAAA
*
53778530 TGCTATACAGAGACCACAGATG
1 TGCTATACAGAGACCACAGACG
* * *
53778552 TGCTAAACAGAGAGCACTGACG
1 TGCTATACAGAGACCACAGACG
53778574 TGCTATA
1 TGCTATA
53778581 TATCAGAGAG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.20
Consensus pattern (22 bp):
TGCTATACAGAGACCACAGACG
Found at i:53778589 original size:25 final size:25
Alignment explanation
Indices: 53778559--53778616 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
53778549 ATGTGCTAAA
** *
53778559 CAGAGAGCACTGACGTGCT-ATATAT
1 CAGAGAGCACCAACATGCTAATA-AT
53778584 CAGAGAGCACCAACATGCTAATAAT
1 CAGAGAGCACCAACATGCTAATAAT
53778609 CAGAGAGC
1 CAGAGAGC
53778617 GCGCTAAAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 26 0.90
26 3 0.10
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.17
Consensus pattern (25 bp):
CAGAGAGCACCAACATGCTAATAAT
Found at i:53778983 original size:15 final size:15
Alignment explanation
Indices: 53778963--53778992 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
53778953 AATATAGACA
*
53778963 TTTAAATAAAATAAT
1 TTTAAAAAAAATAAT
53778978 TTTAAAAAAAATAAT
1 TTTAAAAAAAATAAT
53778993 CTTGTAGTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
TTTAAAAAAAATAAT
Found at i:53779657 original size:11 final size:11
Alignment explanation
Indices: 53779641--53779666 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
53779631 TCTTTCTTTC
53779641 TTTCTCCCCTG
1 TTTCTCCCCTG
53779652 TTTCTCCCCTG
1 TTTCTCCCCTG
53779663 TTTC
1 TTTC
53779667 GATTATGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.42, G:0.08, T:0.50
Consensus pattern (11 bp):
TTTCTCCCCTG
Found at i:53785240 original size:25 final size:25
Alignment explanation
Indices: 53785212--53785294 Score: 114
Period size: 25 Copynumber: 3.3 Consensus size: 25
53785202 TTATACAGAA
**
53785212 CAGAGAGCACTGACGTGCT-ATATAT
1 CAGAGAGCACCAACGTGCTAATA-AT
53785237 CAGAGAGCACCAACGTGCTAATAAT
1 CAGAGAGCACCAACGTGCTAATAAT
* *
53785262 TAGAGAGCACCAATGTGCTAATAAT
1 CAGAGAGCACCAACGTGCTAATAAT
53785287 CAGAGAGC
1 CAGAGAGC
53785295 GCGCTAAAGT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
25 49 0.94
26 3 0.06
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.19
Consensus pattern (25 bp):
CAGAGAGCACCAACGTGCTAATAAT
Found at i:53785598 original size:5 final size:5
Alignment explanation
Indices: 53785584--53785616 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
53785574 TTCCATAATC
*
53785584 TTTTA TTTTA CTTTA TTTTA TTTTA TTTTA TTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTT
53785617 CTAAATAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:53788909 original size:41 final size:41
Alignment explanation
Indices: 53788852--53788957 Score: 185
Period size: 41 Copynumber: 2.6 Consensus size: 41
53788842 AATGAGATAA
* *
53788852 TTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAATGT
1 TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
53788893 TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
1 TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
*
53788934 TTCGGACTTTACGTCTAGCAGGCT
1 TTCAGACTTTACGTCTAGCAGGCT
53788958 AATTGCCAGT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 62 1.00
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (41 bp):
TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
Found at i:53792697 original size:20 final size:21
Alignment explanation
Indices: 53792674--53792712 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
53792664 CCATTTTCTC
*
53792674 TTCTCTTCTCTTT-CTTTCGT
1 TTCTCCTCTCTTTCCTTTCGT
*
53792694 TTCTCCTGTCTTTCCTTTC
1 TTCTCCTCTCTTTCCTTTC
53792713 TTCTTCTTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.00, C:0.33, G:0.05, T:0.62
Consensus pattern (21 bp):
TTCTCCTCTCTTTCCTTTCGT
Found at i:53795740 original size:126 final size:126
Alignment explanation
Indices: 53795554--53795841 Score: 459
Period size: 126 Copynumber: 2.3 Consensus size: 126
53795544 AATTTAAAAT
* * * *
53795554 AGCTCCCACATGGACGCTCTTTTGTTACAGTAACTCTTGAAAAAATAATTTCGAGAAGACGTTTC
1 AGCTCCCACGTGGACGCGCTTTTGTTACAGTAGCTCTTGAAAAAATAATTTCAAGAAGACGTTTC
*
53795619 TGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTACTGAAAGA
66 TGAGCAAACAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTACTGAAAGA
* *
53795680 AGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCAAGTAGACGTTTC
1 AGCTCCCACGTGGACGCGCTTTTGTTACAGTAGCTCTTGAAAAAATAATTTCAAGAAGACGTTTC
* * *
53795745 TGAGCAAACAGTGTCAAAAATGCTTTACGCAGGATGCTTTGTCAGTAAAAGTACTGAAAGA
66 TGAGCAAACAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTACTGAAAGA
** *
53795806 AGCTCCTTCGTGGACGCGCTTTGGTTACAGTAGCTC
1 AGCTCCCACGTGGACGCGCTTTTGTTACAGTAGCTC
53795842 CTGTTTGGCC
Statistics
Matches: 148, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
126 148 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (126 bp):
AGCTCCCACGTGGACGCGCTTTTGTTACAGTAGCTCTTGAAAAAATAATTTCAAGAAGACGTTTC
TGAGCAAACAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTACTGAAAGA
Found at i:53799164 original size:21 final size:21
Alignment explanation
Indices: 53799131--53799187 Score: 53
Period size: 21 Copynumber: 2.7 Consensus size: 21
53799121 CAGCTTCTGA
* *
53799131 CGGGGGTTATGGTTGCTCCGG
1 CGGGGATTCTGGTTGCTCCGG
* **
53799152 CGGGGATTCTGGTTCCTTTGG
1 CGGGGATTCTGGTTGCTCCGG
53799173 CAGGGGA-TCTGGTTG
1 C-GGGGATTCTGGTTG
53799188 TCGATGTTGG
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
21 24 0.83
22 5 0.17
ACGTcount: A:0.07, C:0.18, G:0.44, T:0.32
Consensus pattern (21 bp):
CGGGGATTCTGGTTGCTCCGG
Found at i:53799454 original size:18 final size:18
Alignment explanation
Indices: 53799428--53799470 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
53799418 GAGTAGAAAA
* * *
53799428 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
53799446 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
53799464 AGGATAC
1 AGGATAC
53799471 GCACCTGACA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:53801262 original size:35 final size:31
Alignment explanation
Indices: 53801210--53801280 Score: 74
Period size: 30 Copynumber: 2.2 Consensus size: 31
53801200 ATTTTTATGA
53801210 TTTAAAAAAATTCTAAAAAATAAAATTAAAGCTTTT
1 TTTAAAAAAATTCT--AAAAT---ATTAAAGCTTTT
53801246 TTTAAAAATAA-T-TAAAATATTAAAGCTTTT
1 TTTAAAAA-AATTCTAAAATATTAAAGCTTTT
53801276 TTTAA
1 TTTAA
53801281 GAGGAACTTG
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
30 17 0.50
33 5 0.15
35 1 0.03
36 9 0.26
37 2 0.06
ACGTcount: A:0.52, C:0.04, G:0.03, T:0.41
Consensus pattern (31 bp):
TTTAAAAAAATTCTAAAATATTAAAGCTTTT
Found at i:53801326 original size:10 final size:10
Alignment explanation
Indices: 53801288--53801330 Score: 50
Period size: 10 Copynumber: 4.0 Consensus size: 10
53801278 TAAGAGGAAC
*
53801288 TTGAGAGGAAT
1 TTGAGA-GAAA
53801299 TTGAGAGAATA
1 TTGAGAGAA-A
53801310 TTGGAGAGAAA
1 TT-GAGAGAAA
53801321 TTGAGAGAAA
1 TTGAGAGAAA
53801331 GGATTTAGGT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
10 11 0.38
11 11 0.38
12 7 0.24
ACGTcount: A:0.44, C:0.00, G:0.33, T:0.23
Consensus pattern (10 bp):
TTGAGAGAAA
Found at i:53823745 original size:29 final size:30
Alignment explanation
Indices: 53823710--53823790 Score: 85
Period size: 31 Copynumber: 2.7 Consensus size: 30
53823700 TAATTCAAGT
*
53823710 TTCATGTAT-ATAATTG-TATTAAATCAAAA
1 TTCATGTATCAT-ATTGATATTAAAACAAAA
53823739 TTCATGTATCATATTGCATATTAAAACAAAA
1 TTCATGTATCATATTG-ATATTAAAACAAAA
* * * *
53823770 TTTATATATAATTTTGATATT
1 TTCATGTATCATATTGATATT
53823791 TATCCTTATA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
29 13 0.30
30 7 0.16
31 24 0.55
ACGTcount: A:0.42, C:0.07, G:0.06, T:0.44
Consensus pattern (30 bp):
TTCATGTATCATATTGATATTAAAACAAAA
Found at i:53825709 original size:15 final size:15
Alignment explanation
Indices: 53825689--53825796 Score: 53
Period size: 15 Copynumber: 7.2 Consensus size: 15
53825679 TTTATGGAAA
53825689 ATCAAAGATATAGGT
1 ATCAAAGATATAGGT
* **
53825704 ATCAAATA-ATAGAA
1 ATCAAAGATATAGGT
*
53825718 AGTCAAAGATATGGGT
1 A-TCAAAGATATAGGT
* *
53825734 ATC-AA-ATATTGGAA
1 ATCAAAGATATAGG-T
*
53825748 AGTCAAAGATATGGGT
1 A-TCAAAGATATAGGT
* **
53825764 ATCAAATAT-TAGAA
1 ATCAAAGATATAGGT
*
53825778 AGTCAAAGATATGGGT
1 A-TCAAAGATATAGGT
53825794 ATC
1 ATC
53825797 GAGATATTGG
Statistics
Matches: 66, Mismatches: 19, Indels: 16
0.65 0.19 0.16
Matches are distributed among these distances:
13 6 0.09
14 11 0.17
15 33 0.50
16 10 0.15
17 6 0.09
ACGTcount: A:0.46, C:0.07, G:0.20, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATAGGT
Found at i:53825726 original size:30 final size:30
Alignment explanation
Indices: 53825685--53825796 Score: 188
Period size: 30 Copynumber: 3.7 Consensus size: 30
53825675 CATATTTATG
* * *
53825685 GAAAATCAAAGATATAGGTATCAAATAATA
1 GAAAGTCAAAGATATGGGTATCAAATATTA
*
53825715 GAAAGTCAAAGATATGGGTATCAAATATTG
1 GAAAGTCAAAGATATGGGTATCAAATATTA
53825745 GAAAGTCAAAGATATGGGTATCAAATATTA
1 GAAAGTCAAAGATATGGGTATCAAATATTA
53825775 GAAAGTCAAAGATATGGGTATC
1 GAAAGTCAAAGATATGGGTATC
53825797 GAGATATTGG
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 77 1.00
ACGTcount: A:0.47, C:0.07, G:0.21, T:0.25
Consensus pattern (30 bp):
GAAAGTCAAAGATATGGGTATCAAATATTA
Found at i:53830400 original size:15 final size:15
Alignment explanation
Indices: 53830380--53830487 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
53830370 TTTATGGAAA
53830380 ATCAAATATATGGGT
1 ATCAAATATATGGGT
* **
53830395 ATCAAATA-ATAGAA
1 ATCAAATATATGGGT
*
53830409 AGTCAAAGATATGGGT
1 A-TCAAATATATGGGT
**
53830425 ATCAAATAT-TGGAA
1 ATCAAATATATGGGT
*
53830439 AGTCAAAGATATGGGT
1 A-TCAAATATATGGGT
**
53830455 ATCAAATAT-TGGAA
1 ATCAAATATATGGGT
*
53830469 AGTCAAAGATATGGGT
1 A-TCAAATATATGGGT
53830485 ATC
1 ATC
53830488 GAGATATTGG
Statistics
Matches: 68, Mismatches: 19, Indels: 12
0.69 0.19 0.12
Matches are distributed among these distances:
14 12 0.18
15 44 0.65
16 12 0.18
ACGTcount: A:0.44, C:0.07, G:0.21, T:0.27
Consensus pattern (15 bp):
ATCAAATATATGGGT
Found at i:53830421 original size:30 final size:30
Alignment explanation
Indices: 53830374--53830497 Score: 194
Period size: 30 Copynumber: 4.1 Consensus size: 30
53830364 TCCATATTTA
* * *
53830374 TGGAAAATCAAATATATGGGTATCAAATAA
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
53830404 TAGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
53830434 TGGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
53830464 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
53830495 TGG
1 TGG
53830498 CATAATAAAA
Statistics
Matches: 87, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
30 79 0.91
31 8 0.09
ACGTcount: A:0.44, C:0.06, G:0.23, T:0.27
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:53842349 original size:34 final size:34
Alignment explanation
Indices: 53842289--53842354 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 34
53842279 CAAACACCAG
*
53842289 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTAC-GAAAAGT
* *
53842324 AAAACATTTTCCCG-AAATTATTTTACGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACGAAAA
53842355 ATATTTTACT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 5 0.18
34 11 0.39
35 12 0.43
ACGTcount: A:0.45, C:0.14, G:0.08, T:0.33
Consensus pattern (34 bp):
AAAACATTTTCCAGTAAATCATTTTACGAAAAGT
Found at i:53847660 original size:21 final size:22
Alignment explanation
Indices: 53847631--53847671 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
53847621 TTTTATTTTA
*
53847631 TTTTATTTTATGAATCTTATAG
1 TTTTATTTTAAGAATCTTATAG
*
53847653 TTTT-TTTTAAGAATTTTAT
1 TTTTATTTTAAGAATCTTAT
53847672 GAAAATTTGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.63
Consensus pattern (22 bp):
TTTTATTTTAAGAATCTTATAG
Found at i:53848126 original size:13 final size:13
Alignment explanation
Indices: 53848108--53848171 Score: 60
Period size: 13 Copynumber: 4.9 Consensus size: 13
53848098 AGTTCTTCAT
53848108 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
53848121 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
*
53848134 TGC-TGTGAAAAAG
1 TGCTTTTG-AAAAG
*
53848147 TACTTTT-AAGAAG
1 TGCTTTTGAA-AAG
*
53848160 TACTTTTGAAAA
1 TGCTTTTGAAAA
53848172 TTTTGAGTGT
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
12 5 0.12
13 33 0.79
14 4 0.10
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:53848171 original size:26 final size:26
Alignment explanation
Indices: 53848110--53848171 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
53848100 TTCTTCATTG
* * *
53848110 CTTTTGAAAAGTGCTTTTGAGAAGTG
1 CTTTTGAAAAGTACTTTTAAGAAGTA
*
53848136 C-TGTGAAAAAGTACTTTTAAGAAGTA
1 CTTTTG-AAAAGTACTTTTAAGAAGTA
53848162 CTTTTGAAAA
1 CTTTTGAAAA
53848172 TTTTGAGTGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
25 3 0.10
26 23 0.79
27 3 0.10
ACGTcount: A:0.35, C:0.08, G:0.21, T:0.35
Consensus pattern (26 bp):
CTTTTGAAAAGTACTTTTAAGAAGTA
Found at i:53850467 original size:27 final size:27
Alignment explanation
Indices: 53850437--53850488 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
53850427 AAGACAAGGA
* *
53850437 GAGAAAGAAATATTGAAACAAGAAAGC
1 GAGAAAGAAAGATTAAAACAAGAAAGC
*
53850464 GAGAAAGGAAGATTAAAACAAGAAA
1 GAGAAAGAAAGATTAAAACAAGAAA
53850489 AGAAACCATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.62, C:0.06, G:0.23, T:0.10
Consensus pattern (27 bp):
GAGAAAGAAAGATTAAAACAAGAAAGC
Found at i:53855663 original size:19 final size:19
Alignment explanation
Indices: 53855641--53855691 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
53855631 TTTTTTCATC
*
53855641 AAAATAATTAAAAAATCT-T
1 AAAAT-ATTAAAAAAACTAT
53855660 AAAAT-TATAAAAAAACTAT
1 AAAATAT-TAAAAAAACTAT
*
53855679 TAAATATTAAAAA
1 AAAATATTAAAAA
53855692 TATGAAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
17 1 0.04
18 9 0.33
19 16 0.59
20 1 0.04
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (19 bp):
AAAATATTAAAAAAACTAT
Found at i:53855802 original size:21 final size:19
Alignment explanation
Indices: 53855778--53855824 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 19
53855768 CATAAAATTA
*
53855778 ATAAAACATATTTAGAATTTT
1 ATAAAACATA-TTA-AATTCT
53855799 ATAAAAACATATTAAATTCT
1 AT-AAAACATATTAAATTCT
53855819 ATAAAA
1 ATAAAA
53855825 ATCATAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 4 0.17
20 7 0.29
21 5 0.21
22 8 0.33
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.36
Consensus pattern (19 bp):
ATAAAACATATTAAATTCT
Found at i:53855830 original size:21 final size:22
Alignment explanation
Indices: 53855780--53855830 Score: 70
Period size: 20 Copynumber: 2.4 Consensus size: 22
53855770 TAAAATTAAT
*
53855780 AAAACATATTTAGAATTTTATA
1 AAAACATATTTAGAATTCTATA
53855802 AAAACATA-TTA-AATTCTATA
1 AAAACATATTTAGAATTCTATA
53855822 AAAATCATA
1 AAAA-CATA
53855831 AAAAGTATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 12 0.44
21 7 0.26
22 8 0.30
ACGTcount: A:0.55, C:0.08, G:0.02, T:0.35
Consensus pattern (22 bp):
AAAACATATTTAGAATTCTATA
Found at i:53857169 original size:2 final size:2
Alignment explanation
Indices: 53857162--53857203 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
53857152 CATGTAATAA
*
53857162 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC GC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
53857204 GCAGACACTC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.48, C:0.50, G:0.02, T:0.00
Consensus pattern (2 bp):
AC
Found at i:53857211 original size:8 final size:8
Alignment explanation
Indices: 53857165--53857211 Score: 58
Period size: 8 Copynumber: 5.9 Consensus size: 8
53857155 GTAATAAACA
*
53857165 CACACACA
1 CACACACG
*
53857173 CACACACA
1 CACACACG
*
53857181 CACACACA
1 CACACACG
53857189 CACACACG
1 CACACACG
53857197 CACACACG
1 CACACACG
*
53857205 CAGACAC
1 CACACAC
53857212 TCTCTCTTCA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 37 1.00
ACGTcount: A:0.45, C:0.49, G:0.06, T:0.00
Consensus pattern (8 bp):
CACACACG
Found at i:53867884 original size:13 final size:13
Alignment explanation
Indices: 53867866--53867891 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
53867856 TAACTTCCTT
53867866 AACTGTTAACTGC
1 AACTGTTAACTGC
53867879 AACTGTTAACTGC
1 AACTGTTAACTGC
53867892 TATTATTCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
AACTGTTAACTGC
Found at i:53872398 original size:16 final size:15
Alignment explanation
Indices: 53872379--53872410 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
53872369 TGAATTAAAT
53872379 ATAACAACATTTATTA
1 ATAACAACATTT-TTA
53872395 ATAACAACATTTTTA
1 ATAACAACATTTTTA
53872410 A
1 A
53872411 GCTAAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (15 bp):
ATAACAACATTTTTA
Found at i:53872782 original size:16 final size:16
Alignment explanation
Indices: 53872754--53872799 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
53872744 AATAATAGCC
53872754 TTATATATAAAATATA
1 TTATATATAAAATATA
53872770 TTATCATAT-AAATAT-
1 TTAT-ATATAAAATATA
53872785 TTGATATA-AAAATAT
1 TT-ATATATAAAATAT
53872800 TCAAAAGGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
15 11 0.41
16 12 0.44
17 4 0.15
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (16 bp):
TTATATATAAAATATA
Found at i:53880752 original size:104 final size:104
Alignment explanation
Indices: 53880630--53880853 Score: 369
Period size: 104 Copynumber: 2.2 Consensus size: 104
53880620 AATGGATATC
53880630 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
53880695 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
53880734 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
53880799 GGATCACGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
* **
53880838 GAACACAGCAACCCCT
1 GCACTTAGCAACCCCT
53880854 TTTATATACA
Statistics
Matches: 112, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
104 111 0.99
105 1 0.01
ACGTcount: A:0.32, C:0.31, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:53881215 original size:29 final size:29
Alignment explanation
Indices: 53881182--53881245 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
53881172 TAATCCACCA
53881182 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
53881211 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
53881241 CCCAA
1 CCCAA
53881246 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:53881219 original size:30 final size:30
Alignment explanation
Indices: 53881189--53881245 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
53881179 CCACCCAACT
53881189 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
53881218 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
53881246 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:53892044 original size:2 final size:2
Alignment explanation
Indices: 53892037--53892067 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
53892027 AGACAAAGGC
53892037 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
53892068 GTTATCACCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:53896744 original size:17 final size:17
Alignment explanation
Indices: 53896722--53896757 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
53896712 ATTTTTTTTC
53896722 ATTTT-AAAAATACAATT
1 ATTTTAAAAAATA-AATT
53896739 ATTTTAAAAAATAAATT
1 ATTTTAAAAAATAAATT
53896756 AT
1 AT
53896758 AATATATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.42
Consensus pattern (17 bp):
ATTTTAAAAAATAAATT
Found at i:53898787 original size:29 final size:29
Alignment explanation
Indices: 53898753--53898810 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
53898743 ACCAAAAATT
53898753 TATTTTAAAA-ATAAAAAATATTTTAAAAA
1 TATTTTAAAATATAAAAAAT-TTTTAAAAA
* *
53898782 TATTTTAAAATTTTAAAAATTTTTAAAAA
1 TATTTTAAAATATAAAAAATTTTTAAAAA
53898811 ATATATATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 19 0.73
30 7 0.27
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (29 bp):
TATTTTAAAATATAAAAAATTTTTAAAAA
Found at i:53898791 original size:10 final size:9
Alignment explanation
Indices: 53898767--53898809 Score: 50
Period size: 9 Copynumber: 4.4 Consensus size: 9
53898757 TTAAAAATAA
53898767 AAAATATTTT
1 AAAAT-TTTT
53898777 AAAAATATTTT
1 -AAAAT-TTTT
*
53898788 AAAATTTTA
1 AAAATTTTT
53898797 AAAATTTTT
1 AAAATTTTT
53898806 AAAA
1 AAAA
53898810 AATATATATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
9 15 0.50
10 5 0.17
11 10 0.33
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
AAAATTTTT
Found at i:53898794 original size:19 final size:18
Alignment explanation
Indices: 53898772--53898809 Score: 67
Period size: 19 Copynumber: 2.1 Consensus size: 18
53898762 AATAAAAAAT
53898772 ATTTTAAAAATATTTTAAA
1 ATTTTAAAAAT-TTTTAAA
53898791 ATTTTAAAAATTTTTAAA
1 ATTTTAAAAATTTTTAAA
53898809 A
1 A
53898810 AATATATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
ATTTTAAAAATTTTTAAA
Found at i:53898812 original size:11 final size:11
Alignment explanation
Indices: 53898766--53898810 Score: 62
Period size: 10 Copynumber: 4.5 Consensus size: 11
53898756 TTTAAAAATA
53898766 AAAAATATTTT
1 AAAAATATTTT
53898777 AAAAATATTTT
1 AAAAATATTTT
53898788 --AAA-ATTTT
1 AAAAATATTTT
53898796 AAAAAT-TTTT
1 AAAAATATTTT
53898806 AAAAA
1 AAAAA
53898811 ATATATATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
8 5 0.16
9 3 0.10
10 12 0.39
11 11 0.35
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:53899754 original size:55 final size:55
Alignment explanation
Indices: 53899688--53899795 Score: 162
Period size: 55 Copynumber: 2.0 Consensus size: 55
53899678 AATGCGAAAG
* *
53899688 TCACATAATTGGGTGCTCAACCACCGGAATGAAATATACGAATTAGTGCATTGAA
1 TCACATAATTGGGTGCTCAACCACCAGAATGAAATATACGAATGAGTGCATTGAA
* * * *
53899743 TCACATCATTGGGTGCTCAACTACTAGAATGAAATATACGAATGGGTGCATTG
1 TCACATAATTGGGTGCTCAACCACCAGAATGAAATATACGAATGAGTGCATTG
53899796 GATCTGTCAT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 47 1.00
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (55 bp):
TCACATAATTGGGTGCTCAACCACCAGAATGAAATATACGAATGAGTGCATTGAA
Found at i:53904191 original size:28 final size:31
Alignment explanation
Indices: 53904114--53904191 Score: 72
Period size: 28 Copynumber: 2.6 Consensus size: 31
53904104 GGATAATATA
*
53904114 ATTTTTATTCTCTAAATTTAATAAATTAGTTT
1 ATTTTTATACT-TAAATTTAATAAATTAGTTT
* * * *
53904146 ATTTTAATATTTATATTT-AT-ATTTA-TTT
1 ATTTTTATACTTAAATTTAATAAATTAGTTT
*
53904174 ATTTTTATCCTTAAATTT
1 ATTTTTATACTTAAATTT
53904192 GACGAATAGA
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
28 17 0.46
29 4 0.11
30 2 0.05
31 6 0.16
32 8 0.22
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.62
Consensus pattern (31 bp):
ATTTTTATACTTAAATTTAATAAATTAGTTT
Found at i:53910003 original size:20 final size:23
Alignment explanation
Indices: 53909968--53910008 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
53909958 GTGATGGAGC
53909968 GATCATCTTGCTTGAA-AGCATT
1 GATCATCTTGCTTGAAGAGCATT
53909990 GATC-TCTT-CTTGAAGAGCA
1 GATCATCTTGCTTGAAGAGCA
53910009 GAAATGCGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 8 0.44
22 4 0.22
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (23 bp):
GATCATCTTGCTTGAAGAGCATT
Found at i:53913789 original size:28 final size:28
Alignment explanation
Indices: 53913736--53913789 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
53913726 CAACTTCCCT
**
53913736 TTGAGTTTTTCTTTTTTAAGAATTTTTC
1 TTGAGTTTTTCTTTTAGAAGAATTTTTC
*
53913764 TTGAG-TTTTCTTTTAGAAGAGTTTTT
1 TTGAGTTTTTCTTTTAGAAGAATTTTT
53913790 ACAATCTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 18 0.78
28 5 0.22
ACGTcount: A:0.19, C:0.06, G:0.15, T:0.61
Consensus pattern (28 bp):
TTGAGTTTTTCTTTTAGAAGAATTTTTC
Found at i:53915756 original size:45 final size:45
Alignment explanation
Indices: 53915701--53915790 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
53915691 ATTTAGACCT
*
53915701 TAATTATCCTCTTAAATAGTTGTATTACGATGAATTCAATTTACA
1 TAATTATCCTCTTAAAGAGTTGTATTACGATGAATTCAATTTACA
*
53915746 TAATTATCCTCTTAAAGAGTTGTATTATGATGAATTCAATTTACA
1 TAATTATCCTCTTAAAGAGTTGTATTACGATGAATTCAATTTACA
53915791 AACTTTTTGT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.42
Consensus pattern (45 bp):
TAATTATCCTCTTAAAGAGTTGTATTACGATGAATTCAATTTACA
Found at i:53915965 original size:14 final size:14
Alignment explanation
Indices: 53915946--53915975 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
53915936 ACATTGAAAA
*
53915946 AAAGAATCTATTTG
1 AAAGAATCTACTTG
53915960 AAAGAATCTACTTG
1 AAAGAATCTACTTG
53915974 AA
1 AA
53915976 TTTGTCTAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.10, G:0.13, T:0.30
Consensus pattern (14 bp):
AAAGAATCTACTTG
Found at i:53917208 original size:21 final size:21
Alignment explanation
Indices: 53917179--53917219 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
53917169 TCTATTCTAC
*
53917179 TTCCCTCGCTGCTGCCTCTGT
1 TTCCCTCGCTGCTGCATCTGT
*
53917200 TTCCTTCGCTGCTGCATCTG
1 TTCCCTCGCTGCTGCATCTG
53917220 CTTTAAGTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.02, C:0.39, G:0.20, T:0.39
Consensus pattern (21 bp):
TTCCCTCGCTGCTGCATCTGT
Found at i:53920663 original size:17 final size:17
Alignment explanation
Indices: 53920641--53920675 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
53920631 CTTTATATCC
53920641 TTCAAATACGAAATTGA
1 TTCAAATACGAAATTGA
* *
53920658 TTCAAATATGAACTTGA
1 TTCAAATACGAAATTGA
53920675 T
1 T
53920676 AAGAAAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.34
Consensus pattern (17 bp):
TTCAAATACGAAATTGA
Found at i:53921960 original size:18 final size:18
Alignment explanation
Indices: 53921931--53921988 Score: 66
Period size: 18 Copynumber: 3.2 Consensus size: 18
53921921 TTGACTTTTA
*
53921931 ATATTAATATATGATATG
1 ATATAAATATATGATATG
*
53921949 ATATAAGA-ATATGGTATTG
1 ATATAA-ATATATGATA-TG
53921968 A-ATAAATATATGATATG
1 ATATAAATATATGATATG
53921985 ATAT
1 ATAT
53921989 TGAATAAATC
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
17 4 0.12
18 25 0.76
19 4 0.12
ACGTcount: A:0.47, C:0.00, G:0.14, T:0.40
Consensus pattern (18 bp):
ATATAAATATATGATATG
Found at i:53922640 original size:7 final size:7
Alignment explanation
Indices: 53922630--53922801 Score: 57
Period size: 7 Copynumber: 24.7 Consensus size: 7
53922620 CTTTTTCCTG
*
53922630 TAAACCT
1 TAAACCC
53922637 TAAACCC
1 TAAACCC
53922644 TAAACCC
1 TAAACCC
*
53922651 TAAGCCAC
1 TAAACC-C
* *
53922659 TGACCCC
1 TAAACCC
53922666 TAAACCC
1 TAAACCC
*
53922673 TAAACCT
1 TAAACCC
* *
53922680 TAAGCCAT
1 TAAACC-C
* *
53922688 TGACCCC
1 TAAACCC
*
53922695 TAAACCT
1 TAAACCC
53922702 TAAACCC
1 TAAACCC
*
53922709 TTAA--C
1 TAAACCC
*
53922714 AAACACCC
1 TAA-ACCC
* *
53922722 TAATCCG
1 TAAACCC
*
53922729 TAAACAC
1 TAAACCC
*
53922736 TAAACTC
1 TAAACCC
* *
53922743 TTAACAC
1 TAAACCC
*
53922750 TAAA--T
1 TAAACCC
53922755 TATAACCC
1 TA-AACCC
*
53922763 TAAACCT
1 TAAACCC
53922770 TAAACCC
1 TAAACCC
* *
53922777 CAAACCA
1 TAAACCC
*
53922784 TAGA-CC
1 TAAACCC
*
53922790 TACACCC
1 TAAACCC
53922797 TAAAC
1 TAAAC
53922802 TCTACAAATA
Statistics
Matches: 117, Mismatches: 39, Indels: 18
0.67 0.22 0.10
Matches are distributed among these distances:
5 4 0.03
6 7 0.06
7 91 0.78
8 15 0.13
ACGTcount: A:0.41, C:0.36, G:0.03, T:0.20
Consensus pattern (7 bp):
TAAACCC
Found at i:53922649 original size:14 final size:14
Alignment explanation
Indices: 53922630--53922782 Score: 64
Period size: 14 Copynumber: 10.9 Consensus size: 14
53922620 CTTTTTCCTG
* *
53922630 TAAACCTTAAACCC
1 TAAACCCTAAACCT
* *
53922644 TAAACCCTAAGCCAC
1 TAAACCCTAAACC-T
* * *
53922659 TGACCCCTAAACCC
1 TAAACCCTAAACCT
* *
53922673 TAAACCTTAAGCCAT
1 TAAACCCTAAACC-T
* *
53922688 TGACCCCTAAACCT
1 TAAACCCTAAACCT
*
53922702 TAAACCCTTAA-C-
1 TAAACCCTAAACCT
* * *
53922714 AAACACCCTAATCCG
1 TAA-ACCCTAAACCT
*
53922729 TAAACACTAAACTCT
1 TAAACCCTAAAC-CT
*
53922744 T-AACACTAAA--T
1 TAAACCCTAAACCT
53922755 TATAACCCTAAACCT
1 TA-AACCCTAAACCT
*
53922770 TAAACCCCAAACC
1 TAAACCCTAAACC
53922783 ATAGACCTAC
Statistics
Matches: 103, Mismatches: 26, Indels: 20
0.69 0.17 0.13
Matches are distributed among these distances:
11 2 0.02
12 2 0.02
13 15 0.15
14 57 0.55
15 27 0.26
ACGTcount: A:0.41, C:0.36, G:0.03, T:0.20
Consensus pattern (14 bp):
TAAACCCTAAACCT
Found at i:53922669 original size:29 final size:29
Alignment explanation
Indices: 53922637--53922709 Score: 119
Period size: 29 Copynumber: 2.5 Consensus size: 29
53922627 CTGTAAACCT
53922637 TAAACCCTAAACCCTAAGCCACTGACCCC
1 TAAACCCTAAACCCTAAGCCACTGACCCC
* *
53922666 TAAACCCTAAACCTTAAGCCATTGACCCC
1 TAAACCCTAAACCCTAAGCCACTGACCCC
*
53922695 TAAACCTTAAACCCT
1 TAAACCCTAAACCCT
53922710 TAACAAACAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.36, C:0.40, G:0.05, T:0.19
Consensus pattern (29 bp):
TAAACCCTAAACCCTAAGCCACTGACCCC
Found at i:53922873 original size:7 final size:7
Alignment explanation
Indices: 53922863--53922936 Score: 67
Period size: 7 Copynumber: 10.6 Consensus size: 7
53922853 TATTAAACTT
53922863 TAAACCC
1 TAAACCC
53922870 TAAACCC
1 TAAACCC
53922877 TAAACCC
1 TAAACCC
**
53922884 TAAACAT
1 TAAACCC
*
53922891 TAAACTC
1 TAAACCC
53922898 TAAACCC
1 TAAACCC
**
53922905 TAAATAC
1 TAAACCC
* *
53922912 TAAATCA
1 TAAACCC
*
53922919 TAAACCT
1 TAAACCC
*
53922926 TAAACAC
1 TAAACCC
53922933 TAAA
1 TAAA
53922937 AGTAATTAAA
Statistics
Matches: 54, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
7 54 1.00
ACGTcount: A:0.50, C:0.28, G:0.00, T:0.22
Consensus pattern (7 bp):
TAAACCC
Found at i:53922915 original size:21 final size:21
Alignment explanation
Indices: 53922863--53922936 Score: 87
Period size: 21 Copynumber: 3.5 Consensus size: 21
53922853 TATTAAACTT
* *
53922863 TAAACCCTAAACCCTAAACCC
1 TAAACACTAAACTCTAAACCC
*
53922884 TAAACATTAAACTCTAAACCC
1 TAAACACTAAACTCTAAACCC
* *
53922905 TAAATACTAAA-TCATAAACCT
1 TAAACACTAAACTC-TAAACCC
53922926 TAAACACTAAA
1 TAAACACTAAA
53922937 AGTAATTAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
20 2 0.04
21 43 0.96
ACGTcount: A:0.50, C:0.28, G:0.00, T:0.22
Consensus pattern (21 bp):
TAAACACTAAACTCTAAACCC
Found at i:53923049 original size:21 final size:21
Alignment explanation
Indices: 53923032--53923071 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
53923022 ATTCTAAACA
53923032 CTAAACCAAAAACCCTAAATC
1 CTAAACCAAAAACCCTAAATC
*
53923053 CTAAACCATAAACCCTAAA
1 CTAAACCAAAAACCCTAAA
53923072 ATAAAACTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.53, C:0.33, G:0.00, T:0.15
Consensus pattern (21 bp):
CTAAACCAAAAACCCTAAATC
Found at i:53925545 original size:91 final size:90
Alignment explanation
Indices: 53925397--53925605 Score: 249
Period size: 91 Copynumber: 2.3 Consensus size: 90
53925387 GGTTCTGGCA
* * * * *
53925397 TGTTATCAGTTGAAAAGCTTTTATGAGTAATTTGGCGTGTTATTAGGAGAGAATATTTAGCCTAC
1 TGTTATCAGTTG-AAAGCTCTTATGAGCAATTTGACATGTTATTAGCAGAGAATATTTAGCCTAC
* * *
53925462 GAGCTTTGTACTATGTGCATCTGGTG
65 GAGCTTTGGACTATGTGCATCTAGCG
* *
53925488 TGTTATCGGTTAGAAAGCTCTTATGAGCAATTTGACATGTTA-TCGCAGGAGAATATTTAGCCTA
1 TGTTATCAGTT-GAAAGCTCTTATGAGCAATTTGACATGTTATTAGCA-GAGAATATTTAGCCTA
* *
53925552 TGGGCTTTGGACTATGTGCATCTAGCG
64 CGAGCTTTGGACTATGTGCATCTAGCG
*
53925579 TGTTATCAGTTGGAATAACTCTTATGA
1 TGTTATCAGTT-GAA-AGCTCTTATGA
53925606 TCAAACTGGT
Statistics
Matches: 100, Mismatches: 15, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
90 3 0.03
91 86 0.86
92 11 0.11
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.37
Consensus pattern (90 bp):
TGTTATCAGTTGAAAGCTCTTATGAGCAATTTGACATGTTATTAGCAGAGAATATTTAGCCTACG
AGCTTTGGACTATGTGCATCTAGCG
Found at i:53929840 original size:18 final size:17
Alignment explanation
Indices: 53929801--53929842 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
53929791 TAATTTTAAA
*
53929801 ATATATT-TACAAATTC
1 ATATATTATAAAAATTC
*
53929817 AAATATTATAAAAATTAC
1 ATATATTATAAAAATT-C
53929835 ATATATTA
1 ATATATTA
53929843 AACCCCATCA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 6 0.29
17 7 0.33
18 8 0.38
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.40
Consensus pattern (17 bp):
ATATATTATAAAAATTC
Found at i:53930336 original size:18 final size:18
Alignment explanation
Indices: 53930270--53930336 Score: 61
Period size: 16 Copynumber: 3.9 Consensus size: 18
53930260 AAATTATAAA
* *
53930270 AATAAAAATACCAAAATA
1 AATAAAAATATCAAAATT
*
53930288 AAT-CAAA-ATCAAAATT
1 AATAAAAATATCAAAATT
*
53930304 AA-AAAAATATAAAAAGTT
1 AATAAAAATATCAAAA-TT
53930322 AATAAAAAT-TCAAAA
1 AATAAAAATATCAAAA
53930337 AAAAAATAGC
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
16 12 0.31
17 9 0.23
18 12 0.31
19 6 0.15
ACGTcount: A:0.70, C:0.07, G:0.01, T:0.21
Consensus pattern (18 bp):
AATAAAAATATCAAAATT
Found at i:53931788 original size:25 final size:25
Alignment explanation
Indices: 53931741--53931793 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
53931731 TACATTAATC
*
53931741 AAAGTTTAAGTGGGAAACTAAAAAT
1 AAAGTTTAAGTGGGAAACGAAAAAT
* *
53931766 AAAGTTTAATTGGGAGAA-GAAAAGT
1 AAAGTTTAAGTGGGA-AACGAAAAAT
53931791 AAA
1 AAA
53931794 AAAATACGAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.53, C:0.02, G:0.23, T:0.23
Consensus pattern (25 bp):
AAAGTTTAAGTGGGAAACGAAAAAT
Found at i:53939902 original size:21 final size:22
Alignment explanation
Indices: 53939861--53939902 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
53939851 AGACATGCTT
*
53939861 AACATGTAATCAATAAGACAGA
1 AACATGTAATCAATAAAACAGA
53939883 AACA-GTAAT-AATAATAACAG
1 AACATGTAATCAATAA-AACAG
53939903 TTTATCGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
20 5 0.28
21 9 0.50
22 4 0.22
ACGTcount: A:0.57, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
AACATGTAATCAATAAAACAGA
Found at i:53941523 original size:20 final size:21
Alignment explanation
Indices: 53941495--53941533 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
53941485 TTAGGTCAGT
53941495 AAGCGACTTCT-GTCTATCTG
1 AAGCGACTTCTAGTCTATCTG
* *
53941515 AAGCTACTTTTAGTCTATC
1 AAGCGACTTCTAGTCTATC
53941534 CCGAGTTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (21 bp):
AAGCGACTTCTAGTCTATCTG
Found at i:53976302 original size:18 final size:18
Alignment explanation
Indices: 53976279--53976314 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
53976269 ATCCCAAGGA
53976279 GAAAACATTGTTAATCAC
1 GAAAACATTGTTAATCAC
53976297 GAAAACATTGTTAATCAC
1 GAAAACATTGTTAATCAC
53976315 CAAATGACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.17, G:0.11, T:0.28
Consensus pattern (18 bp):
GAAAACATTGTTAATCAC
Found at i:53977592 original size:18 final size:18
Alignment explanation
Indices: 53977571--53977605 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
53977561 ATTAAAAAGA
*
53977571 AAAATATTTTTAATAATG
1 AAAATATATTTAATAATG
*
53977589 AAAATATATTTGATAAT
1 AAAATATATTTAATAAT
53977606 TATTATTCTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (18 bp):
AAAATATATTTAATAATG
Found at i:53978658 original size:27 final size:27
Alignment explanation
Indices: 53978620--53978671 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
53978610 GGCTAATCAC
*
53978620 ATTGGCTGCACCAAAGGTGCCAAAGAG
1 ATTGGCGGCACCAAAGGTGCCAAAGAG
*
53978647 ATTGGCGGCACCAATGGTGCCAAAG
1 ATTGGCGGCACCAAAGGTGCCAAAG
53978672 GACTAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.31, C:0.23, G:0.31, T:0.15
Consensus pattern (27 bp):
ATTGGCGGCACCAAAGGTGCCAAAGAG
Found at i:53979267 original size:19 final size:19
Alignment explanation
Indices: 53979243--53979338 Score: 115
Period size: 19 Copynumber: 5.2 Consensus size: 19
53979233 TCTAATTAAG
*
53979243 TAATAACTCTATTTTAATT
1 TAATAACTCTATTTTCATT
* *
53979262 TAATAAAT-TATTCTCATT
1 TAATAACTCTATTTTCATT
* *
53979280 TAACAACTCTATTTTAATT
1 TAATAACTCTATTTTCATT
* *
53979299 TAATAA-ACTATTCTCATT
1 TAATAACTCTATTTTCATT
53979317 TAATAACTCTATTTTCATT
1 TAATAACTCTATTTTCATT
53979336 TAA
1 TAA
53979339 AATATAAAAT
Statistics
Matches: 62, Mismatches: 13, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
18 29 0.47
19 33 0.53
ACGTcount: A:0.38, C:0.14, G:0.00, T:0.49
Consensus pattern (19 bp):
TAATAACTCTATTTTCATT
Found at i:53979288 original size:37 final size:37
Alignment explanation
Indices: 53979247--53979338 Score: 157
Period size: 37 Copynumber: 2.5 Consensus size: 37
53979237 ATTAAGTAAT
*
53979247 AACTCTATTTTAATTTAATAAATTATTCTCATTTAAC
1 AACTCTATTTTAATTTAATAAACTATTCTCATTTAAC
*
53979284 AACTCTATTTTAATTTAATAAACTATTCTCATTTAAT
1 AACTCTATTTTAATTTAATAAACTATTCTCATTTAAC
*
53979321 AACTCTATTTTCATTTAA
1 AACTCTATTTTAATTTAA
53979339 AATATAAAAT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 52 1.00
ACGTcount: A:0.37, C:0.14, G:0.00, T:0.49
Consensus pattern (37 bp):
AACTCTATTTTAATTTAATAAACTATTCTCATTTAAC
Found at i:53979587 original size:19 final size:19
Alignment explanation
Indices: 53979563--53979628 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
53979553 ATTTAATTTT
53979563 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
* * *
53979582 TTAAATGAGAATAG-TTTA
1 TTAAATTAAAATAGAGTTA
*
53979600 TTACATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
53979619 TTAAATTAAA
1 TTAAATTAAA
53979629 CTATTTTAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
18 14 0.37
19 24 0.63
ACGTcount: A:0.50, C:0.02, G:0.11, T:0.38
Consensus pattern (19 bp):
TTAAATTAAAATAGAGTTA
Found at i:53979978 original size:27 final size:27
Alignment explanation
Indices: 53979940--53980016 Score: 109
Period size: 27 Copynumber: 2.9 Consensus size: 27
53979930 TTTTAGTCCT
53979940 TTGGCACCATTGGTGCCGCCAATCACA
1 TTGGCACCATTGGTGCCGCCAATCACA
* * *
53979967 TTGGCACCATTGATGCCGCCAATCTCT
1 TTGGCACCATTGGTGCCGCCAATCACA
* *
53979994 TTGGCACCTTTAGTGCCGCCAAT
1 TTGGCACCATTGGTGCCGCCAAT
53980017 GTGATTGGCC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.19, C:0.32, G:0.21, T:0.27
Consensus pattern (27 bp):
TTGGCACCATTGGTGCCGCCAATCACA
Found at i:53980024 original size:27 final size:26
Alignment explanation
Indices: 53979940--53980025 Score: 100
Period size: 27 Copynumber: 3.2 Consensus size: 26
53979930 TTTTAGTCCT
*
53979940 TTGGCACCATTGGTGCCGCCAATCACA
1 TTGGCACCATT-GTGCCGCCAATCTCA
*
53979967 TTGGCACCATTGATGCCGCCAATCTCT
1 TTGGCACCATTG-TGCCGCCAATCTCA
* * *
53979994 TTGGCACCTTTAGTGCCGCCAATGTGA
1 TTGGCACCATT-GTGCCGCCAATCTCA
53980021 TTGGC
1 TTGGC
53980026 CTGATCAGGC
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
26 1 0.02
27 49 0.96
28 1 0.02
ACGTcount: A:0.19, C:0.30, G:0.23, T:0.28
Consensus pattern (26 bp):
TTGGCACCATTGTGCCGCCAATCTCA
Found at i:53980129 original size:20 final size:20
Alignment explanation
Indices: 53980085--53980122 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
53980075 GCGATTCAAT
53980085 ATATATAATAATTATTTAAC
1 ATATATAATAATTATTTAAC
53980105 ATATATAATTAATT-TTTA
1 ATATATAA-TAATTATTTA
53980123 TAATATAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (20 bp):
ATATATAATAATTATTTAAC
Found at i:53986629 original size:10 final size:10
Alignment explanation
Indices: 53986614--53986649 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
53986604 TGAAATGAAA
53986614 TAGAAAATTT
1 TAGAAAATTT
*
53986624 TAGAAAAATT
1 TAGAAAATTT
53986634 TA-AAAATTT
1 TAGAAAATTT
53986643 TAGAAAA
1 TAGAAAA
53986650 AAAGGTCACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.33
Consensus pattern (10 bp):
TAGAAAATTT
Found at i:53991006 original size:37 final size:37
Alignment explanation
Indices: 53990949--53991150 Score: 237
Period size: 37 Copynumber: 5.2 Consensus size: 37
53990939 TATGATCACT
*
53990949 TATCAC-TTGTC-CCTGATCAGATAAGTGTAGCCACC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
* *
53990984 TATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACT
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
* *
53991021 TATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACT
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
53991058 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCAC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGC-----C-A-C-C
*
53991103 TTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAACC
1 -TATCACTTTGTCTCTTGATCAGATAAGTGTAGCC--ACC
53991143 TATCACTT
1 TATCACTT
53991151 ATCACTTTTC
Statistics
Matches: 148, Mismatches: 7, Indels: 20
0.85 0.04 0.11
Matches are distributed among these distances:
35 6 0.04
36 4 0.03
37 91 0.61
39 8 0.05
40 1 0.01
41 2 0.01
42 2 0.01
43 1 0.01
44 1 0.01
46 32 0.22
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (37 bp):
TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
Found at i:53991107 original size:46 final size:46
Alignment explanation
Indices: 53991054--53991420 Score: 437
Period size: 46 Copynumber: 7.6 Consensus size: 46
53991044 TAAGTGTAGC
* **
53991054 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* * *
53991100 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAACCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
53991146 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
53991198 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
53991250 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
53991296 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
53991342 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
53991394 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
53991421 AGTACTCAAA
Statistics
Matches: 289, Mismatches: 19, Indels: 26
0.87 0.06 0.08
Matches are distributed among these distances:
46 154 0.53
48 1 0.00
49 1 0.00
50 2 0.01
51 3 0.01
52 128 0.44
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:53991177 original size:52 final size:52
Alignment explanation
Indices: 53991097--53991414 Score: 417
Period size: 52 Copynumber: 6.3 Consensus size: 52
53991087 TAGCTAAAGC
* * *
53991097 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAACCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
53991150 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * *
53991202 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
53991254 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
53991300 TATCAC-TTT-A----TCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
53991346 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
53991398 TATCACTTTATCACTTG
1 TATCACTTT-TCACTTG
53991415 ATCAGAAGTA
Statistics
Matches: 238, Mismatches: 17, Indels: 20
0.87 0.06 0.07
Matches are distributed among these distances:
46 84 0.35
47 2 0.01
48 2 0.01
52 132 0.55
53 18 0.08
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:53991295 original size:196 final size:196
Alignment explanation
Indices: 53991054--53991406 Score: 598
Period size: 196 Copynumber: 1.8 Consensus size: 196
53991044 TAAGTGTAGC
* * * * *
53991054 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCACT
*
53991119 TGATCAGATAAGTATAGCCGAACCTATCACTTATCACTTTTCACTTGTCACTTGATCAGATAAGT
66 TGATCAGATAAGTATAGCCGAACCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
* *
53991184 GTAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
131 GTAGCCAAAGCTACCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
53991249 T
196 T
*
53991250 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTATCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCACT
* *
53991315 TGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
66 TGATCAGATAAGTATAGCCGAACCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
*
53991380 GTAGCTAAAGCTACCACTTATCACTTT
131 GTAGCCAAAGCTACCACTTATCACTTT
53991407 ATCACTTGAT
Statistics
Matches: 145, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
196 145 1.00
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (196 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCACT
TGATCAGATAAGTATAGCCGAACCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
GTAGCCAAAGCTACCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
T
Found at i:53991409 original size:98 final size:97
Alignment explanation
Indices: 53991054--53991420 Score: 492
Period size: 98 Copynumber: 3.7 Consensus size: 97
53991044 TAAGTGTAGC
* * * *
53991054 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTT-TCAC-TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACT
*
53991119 TGATCAGATAAGTATAGCCGAACCTATCACTTAT
64 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
53991153 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCACTTG
1 CAC-TTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTT--A----
* *
53991218 TCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTAT
59 TCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
53991257 CAC--T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTATCACTTG
1 CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTTG
*
53991317 ATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 ATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
53991349 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACTT
1 CACTTT-CACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTT
53991414 GATCAGA
65 GATCAGA
53991421 AGTACTCAAA
Statistics
Matches: 239, Mismatches: 16, Indels: 27
0.85 0.06 0.10
Matches are distributed among these distances:
92 39 0.16
94 1 0.00
96 1 0.00
98 150 0.63
99 7 0.03
100 2 0.01
101 1 0.00
104 38 0.16
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (97 bp):
CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTTG
ATCAGATAAGTATAGCCGAAGCTATCACTTAT
Done.