Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 180 of 207
Found at i:55202370 original size:9 final size:9
Alignment explanation
Indices: 55202356--55202413 Score: 50
Period size: 9 Copynumber: 6.6 Consensus size: 9
55202346 CAAAATTTAT
55202356 ATTTTAAAA
1 ATTTTAAAA
55202365 ATTTTATAAA
1 ATTTTA-AAA
*
55202375 ATTCTAAAA
1 ATTTTAAAA
* *
55202384 A-TATATATA
1 ATTTTA-AAA
55202393 A-TTT-AAA
1 ATTTTAAAA
55202400 ATTTTAAAA
1 ATTTTAAAA
55202409 ATTTT
1 ATTTT
55202414 CTAAAATAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
7 3 0.08
8 6 0.15
9 23 0.57
10 8 0.20
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (9 bp):
ATTTTAAAA
Found at i:55202391 original size:34 final size:33
Alignment explanation
Indices: 55202347--55202411 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 33
55202337 AAATTTTTTC
*
55202347 AAAATTTATAT-TTTAAAAATTTTATAAAATTCTA
1 AAAATATATATATTT-AAAATTTTA-AAAATTCTA
55202381 AAAATATATATAATTTAAAATTTTAAAAATT
1 AAAATATATAT-ATTTAAAATTTTAAAAATT
55202412 TTCTAAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
34 16 0.57
35 9 0.32
36 3 0.11
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.45
Consensus pattern (33 bp):
AAAATATATATATTTAAAATTTTAAAAATTCTA
Found at i:55202416 original size:36 final size:36
Alignment explanation
Indices: 55202335--55202419 Score: 97
Period size: 36 Copynumber: 2.4 Consensus size: 36
55202325 TCAATATATT
* * *
55202335 TAAAATTTTTTCAAAATTTATATTTTAAAAATTTTA
1 TAAAATTTTCTAAAAATTTATAATTTAAAAATTTTA
55202371 TAAAA--TTCTAAAAATATATATAATTT-AAAATTTTA
1 TAAAATTTTCTAAAAAT-T-TATAATTTAAAAATTTTA
55202406 -AAAATTTTCTAAAA
1 TAAAATTTTCTAAAA
55202420 TAATAATTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
34 12 0.29
35 10 0.24
36 20 0.48
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.46
Consensus pattern (36 bp):
TAAAATTTTCTAAAAATTTATAATTTAAAAATTTTA
Found at i:55202827 original size:26 final size:27
Alignment explanation
Indices: 55202771--55202836 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 27
55202761 TTTAACGGGT
* * *
55202771 TTAAAAATAATTATAATTAACTTATTT
1 TTAAAAATAAATATAATTAACTAATTA
55202798 TTAAAAATAAATATTAATT-A-TAATTA
1 TTAAAAATAAATA-TAATTAACTAATTA
*
55202824 TTAAACATAAATA
1 TTAAAAATAAATA
55202837 AATACAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 16 0.47
27 13 0.38
28 5 0.15
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (27 bp):
TTAAAAATAAATATAATTAACTAATTA
Found at i:55203236 original size:16 final size:16
Alignment explanation
Indices: 55203215--55203262 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
55203205 AAAAAAATTA
55203215 TATTTTTCTATCTTTT
1 TATTTTTCTATCTTTT
*
55203231 TATTTTTTTTATCCTTTT
1 TA-TTTTTCTAT-CTTTT
*
55203249 AATTTTTC-ATCTTT
1 TATTTTTCTATCTTT
55203263 CTAACTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
15 4 0.15
16 4 0.15
17 13 0.48
18 6 0.22
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.73
Consensus pattern (16 bp):
TATTTTTCTATCTTTT
Found at i:55203243 original size:17 final size:18
Alignment explanation
Indices: 55203212--55203255 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
55203202 ATCAAAAAAA
55203212 TTATATTTTTCTAT-CTTT
1 TTAT-TTTTTCTATCCTTT
*
55203230 TTATTTTTTTTATCCTTT
1 TTATTTTTTCTATCCTTT
*
55203248 TAATTTTT
1 TTATTTTT
55203256 CATCTTTCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 8 0.35
18 15 0.65
ACGTcount: A:0.16, C:0.09, G:0.00, T:0.75
Consensus pattern (18 bp):
TTATTTTTTCTATCCTTT
Found at i:55203859 original size:31 final size:31
Alignment explanation
Indices: 55203824--55203886 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
55203814 CAATTTGATC
* *
55203824 ACTGAATTATTCGAAAGTTTTCATTTAAGTT
1 ACTGAACTATTCAAAAGTTTTCATTTAAGTT
*
55203855 ACTGAACTATTCAAAAGTTTTTATTTAAGTT
1 ACTGAACTATTCAAAAGTTTTCATTTAAGTT
55203886 A
1 A
55203887 TTGTCTATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.35, C:0.10, G:0.11, T:0.44
Consensus pattern (31 bp):
ACTGAACTATTCAAAAGTTTTCATTTAAGTT
Found at i:55206843 original size:5 final size:5
Alignment explanation
Indices: 55206835--55206870 Score: 63
Period size: 5 Copynumber: 7.0 Consensus size: 5
55206825 AACTAAAAAT
55206835 ATAAA ATAAA ATAAA CATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA -ATAAA ATAAA ATAAA ATAAA
55206871 TTTCAAAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 25 0.83
6 5 0.17
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (5 bp):
ATAAA
Found at i:55206856 original size:16 final size:15
Alignment explanation
Indices: 55206835--55206870 Score: 63
Period size: 16 Copynumber: 2.3 Consensus size: 15
55206825 AACTAAAAAT
55206835 ATAAAATAAAATAAA
1 ATAAAATAAAATAAA
55206850 CATAAAATAAAATAAA
1 -ATAAAATAAAATAAA
55206866 ATAAA
1 ATAAA
55206871 TTTCAAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 5 0.25
16 15 0.75
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (15 bp):
ATAAAATAAAATAAA
Found at i:55209186 original size:46 final size:44
Alignment explanation
Indices: 55209134--55209627 Score: 553
Period size: 46 Copynumber: 11.6 Consensus size: 44
55209124 TTTGAGTACT
55209134 TCTGATCAAGTGACAAAGTGATAAGTGGTAGTTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAG--TTAGCTACACTTA
55209180 TCTGATCAAGTGACAAAGTGATAA---GT-G---GCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGTTAGCTACACTTA
**
55209217 TCTGATCAAGAAACAAAGTGATAAGT-G--G-T---TACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGTTAGCTACACTTA
**
55209254 TCTGATCAAGAAACAAAGTGATAAGT-G--G-T---TACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGTTAGCTACACTTA
*
55209291 TCTGATCAAGAGACAAAGTGAT-A-----AG-TAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGTTAGCTACACTTA
*
55209328 TCTGATCAAGTGAGAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAG--TTAGCTACACTTA
55209374 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAG--TTAGCTACACTTA
*
55209420 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAG--TTAGCTACACTTA
* *
55209466 TCTGATCAAGTGAGAAAGTGATAAATGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAG--TTAGCTACACTTA
*
55209512 TCTGATCAAGTGAGAAAGTGATAAGTGGTAGCATTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAG--TTAGCTACACTTA
*
55209558 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAG-TTAGCTACACTTA
*
55209603 TCTGATC-AGGGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
55209628 ATCATACGTA
Statistics
Matches: 415, Mismatches: 17, Indels: 35
0.89 0.04 0.07
Matches are distributed among these distances:
34 2 0.00
36 1 0.00
37 126 0.30
38 2 0.00
39 1 0.00
42 1 0.00
43 16 0.04
44 5 0.01
45 19 0.05
46 242 0.58
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (44 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGTTAGCTACACTTA
Found at i:55209261 original size:74 final size:74
Alignment explanation
Indices: 55209168--55209355 Score: 313
Period size: 74 Copynumber: 2.5 Consensus size: 74
55209158 GTGGTAGTTT
55209168 TAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGCTACACTTATCTGATCAAGAAACAA
1 TAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGCTACACTTATCTGATCAAGAAACAA
55209233 AGTGATAAG
66 AGTGATAAG
* * ** * *
55209242 TGGTTACACTTATCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTATCTGATCAAGAGACAA
1 TAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGCTACACTTATCTGATCAAGAAACAA
55209307 AGTGATAAG
66 AGTGATAAG
*
55209316 TAGCTACACTTATCTGATCAAGTGAGAAAGTGATAAGTGG
1 TAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGG
55209356 TAGCCTTAGC
Statistics
Matches: 103, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
74 103 1.00
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.27
Consensus pattern (74 bp):
TAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGCTACACTTATCTGATCAAGAAACAA
AGTGATAAG
Found at i:55211866 original size:15 final size:17
Alignment explanation
Indices: 55211832--55211871 Score: 57
Period size: 15 Copynumber: 2.5 Consensus size: 17
55211822 AATAACAAGA
*
55211832 AAAATAATATAGATACT
1 AAAATAAAATAGATACT
55211849 AAAATAAAATA-A-ACT
1 AAAATAAAATAGATACT
55211864 AAAATAAA
1 AAAATAAA
55211872 GTAATAAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 11 0.50
16 1 0.05
17 10 0.45
ACGTcount: A:0.70, C:0.05, G:0.03, T:0.23
Consensus pattern (17 bp):
AAAATAAAATAGATACT
Found at i:55214667 original size:44 final size:44
Alignment explanation
Indices: 55214460--55215078 Score: 193
Period size: 44 Copynumber: 14.1 Consensus size: 44
55214450 CCAAGCCTTG
* * * * *
55214460 TCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGACTGTAGATCTTA
** * * **
55214504 TCTCCCTAAGCAGTAGTGGAGCGGATCGAAGACGGCGGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGACTGTAGATCTTA
* * * ** * * *
55214548 TCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCAC-CAAG-CCGTG
1 TC-TCCCTAAGCAGTAGT-GG-AGAAGATTGAAG--ACTGTAGATCTTA
* * * * *
55214592 TCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGACTGTAGATCTTA
* * * *
55214636 TCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGCAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGACTGTAGATCTTA
* * * * *
55214680 TCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCACT-AAG-CCTTA
1 TC-TCCCTAAGCAGTAGT-GG-AGAAGATTGAAG--ACTGTAGATCTTA
* * * * *
55214724 TCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGACTGTAGATCTTA
* *
55214768 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAC-G-ACGGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGACTGTA--GATCTTA
* * * *** * *
55214812 TCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAA-ACCACCA-AGCCTTG
1 TC-TCCCTAAGCAGTAGT-GG-AGAAGATTGAAGA-CTGTAGA-TCTTA
* * * * * *
55214856 TCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTG
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGACTGTAGATCTTA
* * * **
55214900 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGACTGTAGATCTTA
* * * ** * *
55214944 TCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCAC-CAAG-CCTTG
1 TC-TCCCTAAGCAGTAGT-GG-AGAAGATTGAAG--ACTGTAGATCTTA
* * * * *
55214988 TCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGACTGTAGATCTTA
* * * * * *
55215032 TCCCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGTGGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGACTGTAGATCTTA
55215076 TCT
1 TCT
55215079 TTCCAAGATA
Statistics
Matches: 403, Mismatches: 128, Indels: 88
0.65 0.21 0.14
Matches are distributed among these distances:
42 21 0.05
43 33 0.08
44 304 0.75
45 30 0.07
46 15 0.04
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (44 bp):
TCTCCCTAAGCAGTAGTGGAGAAGATTGAAGACTGTAGATCTTA
Found at i:55215210 original size:132 final size:132
Alignment explanation
Indices: 55214386--55215172 Score: 1430
Period size: 132 Copynumber: 6.0 Consensus size: 132
55214376 CTGCATTGAC
*
55214386 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
55214451 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
55214516 GT
131 GT
*
55214518 AGTGGAGCGGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
*
55214583 CAAGCCGTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
55214648 GT
131 GT
* *
55214650 AGTGGAGTAGATCGAAGACGGCAGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* *
55214715 TAAGCCTTATCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
55214780 GT
131 GT
* *
55214782 AGTGGAGCAGATCGAAGACGACGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAACCAC
1 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
*
55214847 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTGTCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
55214912 GT
131 GT
55214914 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
*
55214979 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCCCCCTAAGCA
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
55215044 GT
131 GT
* *
55215046 AGTAGAGCAGATCGAAGACGGTGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * *
55215111 CAAGCCTTGTCTCCCTCAGCAGTAGCGAAGAAGGTTGAAGATTGTAGATCCTATCTCCCTAA
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAA
55215173 AGTTGCAGTG
Statistics
Matches: 629, Mismatches: 26, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 629 1.00
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.24
Consensus pattern (132 bp):
AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
GT
Found at i:55215291 original size:44 final size:42
Alignment explanation
Indices: 55215241--55215669 Score: 336
Period size: 44 Copynumber: 9.8 Consensus size: 42
55215231 GATCGCATCT
*
55215241 AGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTAAGTAAGCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA--AAGCA
* *
55215285 AGTCTTATC-CTCTTGAAGTTGCAGTGG-GACAGACTGAAGATGGCA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGAG-CAGACT-AA-A-AGCA
*
55215330 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAAAGCCGA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAG-C-A
* *
55215373 TAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
1 -AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA--AAGCA
* *
55215418 AGTCTTATC-CTCCTGAAGTTGCAGTGGGGCAGACTGAATATGGCA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGAGCAGACT-AA-A-AGCA
* *
55215463 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCA-AATTAAAGCCGA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAG-C-A
* * * * * *
55215506 TAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTT
1 -AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGC-A
* * * *** * *
55215550 AGATCTTATCTCTCTGAAGTTGCAG-AGAGTAGA-TCGCATCT
1 AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGCA
* *
55215591 AGTCTTATCTCTCTGAAGTTGCAGTGAAGCAGACTAAATAAGCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AA-AAGCA
55215635 AGTCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACT
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT
55215670 GAAGATGGCA
Statistics
Matches: 312, Mismatches: 46, Indels: 54
0.76 0.11 0.13
Matches are distributed among these distances:
40 22 0.07
41 10 0.03
42 8 0.03
43 15 0.05
44 176 0.56
45 74 0.24
46 4 0.01
47 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (42 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGCA
Found at i:55215350 original size:89 final size:87
Alignment explanation
Indices: 55215241--55215679 Score: 343
Period size: 89 Copynumber: 5.0 Consensus size: 87
55215231 GATCGCATCT
* *
55215241 AGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTAAGTAAGCAAGTCTTATCCTCTTGAAGTTG
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA-TAAGCAAGTCTTAT-CTCCTGAAGTTG
55215306 CAGTGGGACAGACTGAAGATGGCA
64 CAGTGGGACAGACTGAAGATGGCA
* * *
55215330 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA-AAGCCGATAATCCTATCTCCCTGAAGT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAATAAG-C-A-AGTCTTATCT-CCTGAAGT
*
55215393 TGCAGT-GGAGCAGACT-AAG-TAAGCA
62 TGCAGTGGGA-CAGACTGAAGAT-GGCA
* *
55215418 AGTCTTATC-CTCCTGAAGTTGCAGTGGGGCAGACTGAATATGGCAAGTCTTATCTCCCTGAAGT
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGAGCAGACT-AATA-AGCAAGTCTTATCT-CCTGAAGT
* * * ** **
55215482 TGCAGT-GGAGCAAATTAAAGCCGATA
62 TGCAGTGGGA-CAGACTGAAGATGGCA
* * * * *
55215508 A-TCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAA-AACCTTAGATCTTATCTCTCTGAAGTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAATAAGC-AAG-TCTTATCTC-CTGAAGTT
* * * * *
55215571 GCAGAGAG-TAGA-TCG--CAT--CT
63 GCAGTGGGACAGACT-GAAGATGGCA
* *
55215591 AGTCTTATCTCTCTGAAGTTGCAGTGAAGCAGACTAAATAAGCAAGTCTTATCCTCCTGAAGTTG
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AATAAGCAAGTCTTAT-CTCCTGAAGTTG
55215656 CAGTGAGG-CAGACTGAAGATGGCA
64 CAGTG-GGACAGACTGAAGATGGCA
55215680 CTAATTCCTA
Statistics
Matches: 275, Mismatches: 46, Indels: 58
0.73 0.12 0.15
Matches are distributed among these distances:
83 1 0.00
84 47 0.17
85 12 0.04
86 9 0.03
87 11 0.04
88 66 0.24
89 118 0.43
90 8 0.03
91 2 0.01
92 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (87 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAATAAGCAAGTCTTATCTCCTGAAGTTGCA
GTGGGACAGACTGAAGATGGCA
Found at i:55215395 original size:133 final size:133
Alignment explanation
Indices: 55215246--55215536 Score: 537
Period size: 133 Copynumber: 2.2 Consensus size: 133
55215236 CATCTAGTCT
* *
55215246 TATCTCCCTGAAGTTGCAGTAGAGCAGACTAAGTAAGCAAGTCTTATCCTCTTGAAGTTGCAGTG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTG
*
55215311 GGACAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAA
66 GGACAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGCCGATAA
55215376 TCC
131 TCC
55215379 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTG
* *
55215444 GGGCAGACTGAATATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGCCGATAA
66 GGACAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGCCGATAA
55215509 TCC
131 TCC
55215512 TATCTCCCTGAAGTTGCAGTGGAGC
1 TATCTCCCTGAAGTTGCAGTGGAGC
55215537 GGATTAAAAC
Statistics
Matches: 153, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
133 153 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (133 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTG
GGACAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGCCGATAA
TCC
Found at i:55215567 original size:133 final size:131
Alignment explanation
Indices: 55215246--55215574 Score: 516
Period size: 133 Copynumber: 2.5 Consensus size: 131
55215236 CATCTAGTCT
*
55215246 TATCTCCCTGAAGTTGCAGTAGAGCAGACTAAGTAAGCAAGTCTTATCCTCTTGAAGTTGCAGTG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCTTATCCTC-TGAAGTTGCAGTG
*
55215311 GGACAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAA
64 GGACAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGCCGATAA
55215376 TCC
129 TCC
55215379 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCTTATCCT-CTGAAGTTGCAGTG
* *
55215444 GGGCAGACTGAATATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGCCGATAA
64 GGACAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGCCGATAA
55215509 TCC
129 TCC
* * * *
55215512 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAA-AACCTTAGATCTTATCTCTCTGAAGTTGCAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCTTATC-CTCTGAAGTTGCAG
55215575 AGAGTAGATC
Statistics
Matches: 184, Mismatches: 8, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
131 3 0.02
132 2 0.01
133 176 0.96
134 3 0.02
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (131 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTATCCTCTGAAGTTGCAGTGGG
ACAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGCCGATAATC
C
Found at i:55215869 original size:19 final size:19
Alignment explanation
Indices: 55215845--55215957 Score: 145
Period size: 19 Copynumber: 5.8 Consensus size: 19
55215835 AATTTTTGAG
55215845 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
** *
55215864 GATATGCAATCCAATATAT
1 GATATGCAATCTTAGATAT
55215883 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
55215904 GATATGCAATCTTAGAGAT
1 GATATGCAATCTTAGATAT
**
55215923 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
55215942 GATATGCAATATTAGA
1 GATATGCAATCTTAGA
55215958 ATATATGATT
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
19 63 0.80
21 16 0.20
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:55215890 original size:40 final size:40
Alignment explanation
Indices: 55215846--55215951 Score: 162
Period size: 40 Copynumber: 2.7 Consensus size: 40
55215836 ATTTTTGAGG
* *
55215846 ATATGCAATCTTAGATATGATATGCAATCCAATATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCCAAGAGATGAT
**
55215886 ATATGCAATCTTAGATATGATATGCAATCTTAGAGATGAT
1 ATATGCAATCTTAGATATGATATGCAATCCAAGAGATGAT
55215926 ATAT--AATCTTAGATATGATATGCAAT
1 ATATGCAATCTTAGATATGATATGCAAT
55215952 ATTAGAATAT
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
38 22 0.35
40 40 0.65
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.36
Consensus pattern (40 bp):
ATATGCAATCTTAGATATGATATGCAATCCAAGAGATGAT
Found at i:55216511 original size:18 final size:17
Alignment explanation
Indices: 55216468--55216511 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
55216458 TTGCAATTCA
*
55216468 ATTTAGTTTTTCTTTTC
1 ATTTATTTTTTCTTTTC
* *
55216485 TTTTTTTTTGTTCTTTTC
1 ATTTATTTT-TTCTTTTC
55216503 ATTTATTTT
1 ATTTATTTT
55216512 ATTAATTAAT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.09, C:0.09, G:0.05, T:0.77
Consensus pattern (17 bp):
ATTTATTTTTTCTTTTC
Found at i:55216760 original size:24 final size:25
Alignment explanation
Indices: 55216718--55216766 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
55216708 TACATGTATA
55216718 TATATTTTTTAAAACGAATATTTTCC
1 TATATTTTTT-AAACGAATATTTTCC
*
55216744 TATATTTTTT-AATGAATATTTTC
1 TATATTTTTTAAACGAATATTTTC
55216767 ATATTTATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 12 0.55
26 10 0.45
ACGTcount: A:0.33, C:0.08, G:0.04, T:0.55
Consensus pattern (25 bp):
TATATTTTTTAAACGAATATTTTCC
Found at i:55217556 original size:98 final size:98
Alignment explanation
Indices: 55217440--55217632 Score: 314
Period size: 98 Copynumber: 2.0 Consensus size: 98
55217430 AAAAATCATG
*
55217440 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
*
55217505 AAATCTTGGATAAGTGGACGTTCTTTTAAAGTA
66 AAATCTCGGATAAGTGGACGTTCTTTTAAAGTA
** **
55217538 AAGGAAATATTTTGAGTTTGAGATTCTAAAGGGGTCGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
* *
55217603 AAATCTCGGATGAGTGGATGTTCTTTTAAA
66 AAATCTCGGATAAGTGGACGTTCTTTTAAA
55217633 ATTTTATTGT
Statistics
Matches: 87, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
98 87 1.00
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.36
Consensus pattern (98 bp):
AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
AAATCTCGGATAAGTGGACGTTCTTTTAAAGTA
Found at i:55220971 original size:29 final size:27
Alignment explanation
Indices: 55220909--55220974 Score: 82
Period size: 29 Copynumber: 2.4 Consensus size: 27
55220899 ATAGAAAATA
55220909 ATCAAAATATTATAACTTTTTTTATTT
1 ATCAAAATATTATAACTTTTTTTATTT
55220936 A-CTAAAATATTATACAAAC-TTTTTTATTT
1 ATC-AAAATATTAT---AACTTTTTTTATTT
55220965 ATCAAAATAT
1 ATCAAAATAT
55220975 ATTAAAAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
26 1 0.03
27 11 0.32
29 18 0.53
30 4 0.12
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (27 bp):
ATCAAAATATTATAACTTTTTTTATTT
Found at i:55221058 original size:27 final size:27
Alignment explanation
Indices: 55221028--55221079 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
55221018 GGCCAATCAC
*
55221028 ATTGGCAGCACCAAAGGTGCTAAAGAG
1 ATTGGCAGCACCAAAGGTGCCAAAGAG
*
55221055 ATTGGCAGCACCAATGGTGCCAAAG
1 ATTGGCAGCACCAAAGGTGCCAAAG
55221080 GACTAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.35, C:0.21, G:0.29, T:0.15
Consensus pattern (27 bp):
ATTGGCAGCACCAAAGGTGCCAAAGAG
Found at i:55221413 original size:19 final size:19
Alignment explanation
Indices: 55221389--55221448 Score: 77
Period size: 19 Copynumber: 3.2 Consensus size: 19
55221379 ATTAAAATAG
55221389 TTTAATTTAATAACTCTAT
1 TTTAATTTAATAACTCTAT
* *
55221408 TTTAATATAATAA-ACTAT
1 TTTAATTTAATAACTCTAT
* *
55221426 TCTCATTTAATAACTCTAT
1 TTTAATTTAATAACTCTAT
55221445 TTTA
1 TTTA
55221449 GATTAAAAAA
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
18 14 0.44
19 18 0.56
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (19 bp):
TTTAATTTAATAACTCTAT
Found at i:55221719 original size:18 final size:19
Alignment explanation
Indices: 55221680--55221738 Score: 84
Period size: 19 Copynumber: 3.2 Consensus size: 19
55221670 ATTTTATATT
55221680 TTAAATGAAAATAGAGTTA
1 TTAAATGAAAATAGAGTTA
* *
55221699 TTAAATGAGAATAG-TTTA
1 TTAAATGAAAATAGAGTTA
*
55221717 TTAAATTAAAATAGAGTTA
1 TTAAATGAAAATAGAGTTA
55221736 TTA
1 TTA
55221739 CTTAATTAGA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
18 15 0.44
19 19 0.56
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (19 bp):
TTAAATGAAAATAGAGTTA
Found at i:55222398 original size:27 final size:27
Alignment explanation
Indices: 55222314--55222399 Score: 118
Period size: 27 Copynumber: 3.2 Consensus size: 27
55222304 TTTTAGTCCT
* *
55222314 TTGGCACCATTGGTGCTGCCAATCACA
1 TTGGCACCATTGGTGCCGCCAATCTCA
*
55222341 TTGGCACCATTGGTGCCGCCAATCTCT
1 TTGGCACCATTGGTGCCGCCAATCTCA
* * *
55222368 TTGGCACCTTTGGTGCCGCCAATGTGA
1 TTGGCACCATTGGTGCCGCCAATCTCA
55222395 TTGGC
1 TTGGC
55222400 CTGATCAGGC
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.16, C:0.29, G:0.26, T:0.29
Consensus pattern (27 bp):
TTGGCACCATTGGTGCCGCCAATCTCA
Found at i:55222486 original size:26 final size:27
Alignment explanation
Indices: 55222454--55222516 Score: 119
Period size: 26 Copynumber: 2.4 Consensus size: 27
55222444 TTTTTTTGGT
55222454 ATATTTTGGTAAATAAAAAAA-TTATA
1 ATATTTTGGTAAATAAAAAAAGTTATA
55222480 ATATTTTGGTAAATAAAAAAAGTTATA
1 ATATTTTGGTAAATAAAAAAAGTTATA
55222507 ATATTTTGGT
1 ATATTTTGGT
55222517 TATTTTTTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 21 0.58
27 15 0.42
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (27 bp):
ATATTTTGGTAAATAAAAAAAGTTATA
Found at i:55223184 original size:20 final size:19
Alignment explanation
Indices: 55223142--55223184 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
55223132 AATTCTATGG
* * *
55223142 TTTATTTTTTAAATTTTTT
1 TTTATTTTTGAAATATTTC
55223161 TTTATTTCTTGAAATATTTC
1 TTTATTT-TTGAAATATTTC
55223181 TTTA
1 TTTA
55223185 CTTAGTTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.70
Consensus pattern (19 bp):
TTTATTTTTGAAATATTTC
Found at i:55223242 original size:20 final size:21
Alignment explanation
Indices: 55223214--55223252 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
55223204 TATTTTTAAT
*
55223214 TAAATTTTATTCTTTTAAACG
1 TAAATTTTATTCATTTAAACG
55223235 TAAA-TTTATTCATTTAAA
1 TAAATTTTATTCATTTAAA
55223253 TTAATTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.38, C:0.08, G:0.03, T:0.51
Consensus pattern (21 bp):
TAAATTTTATTCATTTAAACG
Found at i:55223263 original size:136 final size:138
Alignment explanation
Indices: 55223008--55223271 Score: 374
Period size: 136 Copynumber: 1.9 Consensus size: 138
55222998 GCCAATCAAG
* * * *
55223008 TTTTTAATTTTTTTTTGTTTCTTTAAATATTTCTTTATTTAGTTTTATTCTTTAATCATTCTTTT
1 TTTTTAATTTTTTTTTATTTCTTGAAATATTTCTTTACTTAGTTTTATTCTTTAA-CATTCATTT
** * *
55223073 TTAATTAAATTTTAATCTTTTAAATTTAAATTAATTCCTTTATATTAATATTTTAATTAAATTCT
65 TTAATTAAATTTTAATCTTTTAAACGTAAATTAATTCATTTAAATTAATATTTTAATTAAATTCT
55223138 ATGGTTTAT
130 ATGGTTTAT
55223147 TTTTTAAATTTTTTTTTATTTCTTGAAATATTTCTTTACTTAG-TTTATTTCTTT-A-ATT-ATT
1 TTTTT-AATTTTTTTTTATTTCTTGAAATATTTCTTTACTTAGTTTTA-TTCTTTAACATTCATT
* * *
55223208 TTTAATTAAATTTTATTCTTTTAAACGTAAATTTATTCATTTAAATTAATTTTTTAATTAAATT
64 TTTAATTAAATTTTAATCTTTTAAACGTAAATTAATTCATTTAAATTAATATTTTAATTAAATT
55223272 TGATTATCGA
Statistics
Matches: 112, Mismatches: 11, Indels: 7
0.86 0.08 0.05
Matches are distributed among these distances:
136 59 0.53
137 3 0.03
139 10 0.09
140 40 0.36
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.62
Consensus pattern (138 bp):
TTTTTAATTTTTTTTTATTTCTTGAAATATTTCTTTACTTAGTTTTATTCTTTAACATTCATTTT
TAATTAAATTTTAATCTTTTAAACGTAAATTAATTCATTTAAATTAATATTTTAATTAAATTCTA
TGGTTTAT
Found at i:55246798 original size:19 final size:19
Alignment explanation
Indices: 55246776--55246817 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
55246766 TTTAAAGCTA
*
55246776 GTTT-TTTTTCTCTTCTTTT
1 GTTTATTTTTC-CTTATTTT
55246795 GTTTATTTTTCCTTATTTT
1 GTTTATTTTTCCTTATTTT
55246814 GTTT
1 GTTT
55246818 CCTTCCTTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.05, C:0.12, G:0.07, T:0.76
Consensus pattern (19 bp):
GTTTATTTTTCCTTATTTT
Found at i:55246927 original size:6 final size:6
Alignment explanation
Indices: 55246846--55246919 Score: 51
Period size: 6 Copynumber: 11.5 Consensus size: 6
55246836 AGTGATTTCA
* * *
55246846 TTTAGT TTTATTT TTTATT TTTACT TTTATTT TTCTGATT TATATGT TTTA-T
1 TTTATT TTTA-TT TTTATT TTTATT TTTA-TT TT-T-ATT TTTAT-T TTTATT
*
55246898 TTTATT TTTATT CTGTATT TTT
1 TTTATT TTTATT -TTTATT TTT
55246920 TTTATTTTGT
Statistics
Matches: 54, Mismatches: 7, Indels: 14
0.72 0.09 0.19
Matches are distributed among these distances:
5 5 0.09
6 26 0.48
7 18 0.33
8 4 0.07
9 1 0.02
ACGTcount: A:0.16, C:0.04, G:0.05, T:0.74
Consensus pattern (6 bp):
TTTATT
Found at i:55246940 original size:22 final size:21
Alignment explanation
Indices: 55246890--55246943 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
55246880 CTGATTTATA
* *
55246890 TGTTTTATTTTATTTTTATTC
1 TGTTTTTTTTTATTTTTAGTC
55246911 TGTATTTTTTTTATTTTGTCAGT-
1 TGT-TTTTTTTTATTTT-T-AGTC
55246934 TGTTTTTTTT
1 TGTTTTTTTT
55246944 CTAGTTGTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
21 3 0.11
22 19 0.68
23 4 0.14
24 2 0.07
ACGTcount: A:0.11, C:0.04, G:0.09, T:0.76
Consensus pattern (21 bp):
TGTTTTTTTTTATTTTTAGTC
Found at i:55247588 original size:29 final size:29
Alignment explanation
Indices: 55247544--55247600 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 29
55247534 GAATATAAAC
55247544 TATATTTTTTATTTTTAAAATACACTACA
1 TATATTTTTTATTTTTAAAATACACTACA
55247573 TATATTTTTTTATTTTTAAAATACACTA
1 TATA-TTTTTTATTTTTAAAATACACTA
55247601 ATAGTAATTC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
29 4 0.15
30 23 0.85
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.54
Consensus pattern (29 bp):
TATATTTTTTATTTTTAAAATACACTACA
Found at i:55251951 original size:88 final size:88
Alignment explanation
Indices: 55251787--55251990 Score: 291
Period size: 88 Copynumber: 2.3 Consensus size: 88
55251777 CTTGTCTTAC
* * * *
55251787 TCGCTGTCGGTGCAGGAATGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCCAAGGAGGT
1 TCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAAGGAAGC
*
55251852 AAGGCTAGTGTCTTTGATTTGCT
66 AAGGCTAGTGTCTTCGATTTGCT
** * *
55251875 TCGCTGTTTGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCTGCTACAACCCAGGGAAGC
1 TCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAAGGAAGC
* * *
55251940 AAGGTTGGTGTCTTCGATTTGTT
66 AAGGCTAGTGTCTTCGATTTGCT
*
55251963 TTGCTGTCGGTGCAGGAAGGCAAGATCT
1 TCGCTGTCGGTGCAGGAAGGCAAGATCT
55251991 ATTATCTTCA
Statistics
Matches: 101, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
88 101 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (88 bp):
TCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAAGGAAGC
AAGGCTAGTGTCTTCGATTTGCT
Found at i:55253335 original size:14 final size:15
Alignment explanation
Indices: 55253312--55253344 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
55253302 ATCGACGCTT
55253312 TTCCAAATAAGG-CC
1 TTCCAAATAAGGTCC
*
55253326 TTCCACATAAGGTCC
1 TTCCAAATAAGGTCC
55253341 TTCC
1 TTCC
55253345 TAGCTTGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.27, C:0.33, G:0.12, T:0.27
Consensus pattern (15 bp):
TTCCAAATAAGGTCC
Found at i:55254221 original size:25 final size:26
Alignment explanation
Indices: 55254170--55254224 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
55254160 AAGAAAATCC
* **
55254170 AAAAGAATGAAAGAATAATTATTTCA
1 AAAAGAATGAAAAAATAATTAGCTCA
*
55254196 AAAAGAATGAAAAAAT-ATTGGCTCA
1 AAAAGAATGAAAAAATAATTAGCTCA
55254221 AAAA
1 AAAA
55254225 TAAATGCAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.60, C:0.05, G:0.13, T:0.22
Consensus pattern (26 bp):
AAAAGAATGAAAAAATAATTAGCTCA
Found at i:55256956 original size:43 final size:44
Alignment explanation
Indices: 55256844--55256956 Score: 108
Period size: 43 Copynumber: 2.6 Consensus size: 44
55256834 TGTGTTGTAG
* * *
55256844 TGTAAGACCACGTCTGGGACG-TCGACATCAACTTGTGATTTACG
1 TGTAAGACCACGTCTAGGACGAT-GGCATCAACTTGTGATTTACA
* ** *
55256888 TGTAAGACC-CTTTCTAGGATAATGGCATCGA-TATGTGA-TTACA
1 TGTAAGACCAC-GTCTAGGACGATGGCATCAACT-TGTGATTTACA
55256931 TGTAAGACCACGTCTAGGACGATGGC
1 TGTAAGACCACGTCTAGGACGATGGC
55256957 GTTGTACGAA
Statistics
Matches: 55, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
43 27 0.49
44 27 0.49
45 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (44 bp):
TGTAAGACCACGTCTAGGACGATGGCATCAACTTGTGATTTACA
Found at i:55257821 original size:23 final size:23
Alignment explanation
Indices: 55257745--55258563 Score: 275
Period size: 23 Copynumber: 35.3 Consensus size: 23
55257735 TTCGGTTCAA
* * *
55257745 GTCCAATTCAGTGTCTATATGCT
1 GTCCAATTTAGTATATATATGCT
* * * * * *
55257768 ATCCAATTTTGGTGTAAAAATGTT
1 GTCCAA-TTTAGTATATATATGCT
55257792 GTCCAATTTTA-TATATATATGCT
1 GTCCAA-TTTAGTATATATATGCT
* *
55257815 GTCCAATTTAGTGTTTATATGCT
1 GTCCAATTTAGTATATATATGCT
* * * * *
55257838 GTCAAAATTTGGTGTGA-AAATGCA
1 GTC-CAATTTAGTAT-ATATATGCT
* *
55257862 GTCAAATTTGGTATATATATGCT
1 GTCCAATTTAGTATATATATGCT
* * *
55257885 G-CCTAATTTGGTGTCTATATGCT
1 GTCC-AATTTAGTATATATATGCT
* * * * * *
55257908 GTTCAATTTTGGTGTAAAAAATGTT
1 GTCCAA-TTTAGTAT-ATATATGCT
*
55257933 GTCCAATTTGGTATATATATGCT
1 GTCCAATTTAGTATATATATGCT
* ** * *
55257956 GCCCAATTCGGTGTCTATA---T
1 GTCCAATTTAGTATATATATGCT
* * * * * *
55257976 ATCCAATTTTGGTGTAAAAATGTT
1 GTCCAA-TTTAGTATATATATGCT
*
55258000 GTCCAATTTGGTATATATATGCT
1 GTCCAATTTAGTATATATATGCT
** * * * *
55258023 ACCCAATTTGGTGTCTATATGTT
1 GTCCAATTTAGTATATATATGCT
* * * *
55258046 GTCCAATTTTGGTGTAAAAATGCT
1 GTCCAA-TTTAGTATATATATGCT
55258070 GTCCAATTT-GCTATATATATGCT
1 GTCCAATTTAG-TATATATATGCT
* * *
55258093 GCCCAATTTGGTGTATATATGCT
1 GTCCAATTTAGTATATATATGCT
* * * * *
55258116 GTCAAATTTTGGTGTA-AGAATGTT
1 GTCCAA-TTTAGTATATA-TATGCT
55258140 GTCCAATTTAGTATATATATGCT
1 GTCCAATTTAGTATATATATGCT
** * * *
55258163 GTCCAATTCGGTGTCTATATGCA
1 GTCCAATTTAGTATATATATGCT
* * * * *
55258186 ATCCAATTTTGGTGTAAAAATGCT
1 GTCCAA-TTTAGTATATATATGCT
55258210 GTCCAATTT-GCTATATATATGCT
1 GTCCAATTTAG-TATATATATGCT
* * *
55258233 GCCCAATTTGGTGTATATATGCT
1 GTCCAATTTAGTATATATATGCT
* * * * *
55258256 GTCAAATTTTGGTGTA-AGAATGTT
1 GTCCAA-TTTAGTATATA-TATGCT
55258280 GTCCAATTTAGTATATATATGCT
1 GTCCAATTTAGTATATATATGCT
* * *
55258303 GCCCAATTTGGTGTATATATGCT
1 GTCCAATTTAGTATATATATGCT
* * * * *
55258326 GTCAAATTTTGGTGTA-AGAATGTT
1 GTCCAA-TTTAGTATATA-TATGCT
*
55258350 GTCCAATTTAGTATATTTATGCT
1 GTCCAATTTAGTATATATATGCT
** * * *
55258373 GTCCAATTCGGTGTCTATATGCA
1 GTCCAATTTAGTATATATATGCT
* * * * * *
55258396 ATCCAATTTTGGTGTAAAAATGTT
1 GTCCAA-TTTAGTATATATATGCT
55258420 GTCCAATTT-GATATATATAT--T
1 GTCCAATTTAG-TATATATATGCT
* * * *
55258441 GCCCAATTTGGTGTATAAATGCT
1 GTCCAATTTAGTATATATATGCT
* * * * * *
55258464 ATCCAATTTTTGTGTAAAAATGTT
1 GTCCAA-TTTAGTATATATATGCT
*
55258488 GTCCAATTT-GATATATATAT-AT
1 GTCCAATTTAG-TATATATATGCT
* * * *
55258510 TTCCCAATTTGGTGTATAAATGCT
1 GT-CCAATTTAGTATATATATGCT
* * * *
55258534 ATCCAATTTTGGTGTATAAATGCT
1 GTCCAA-TTTAGTATATATATGCT
55258558 GTCCAA
1 GTCCAA
55258564 ACAGGGTAAT
Statistics
Matches: 606, Mismatches: 151, Indels: 77
0.73 0.18 0.09
Matches are distributed among these distances:
20 5 0.01
21 25 0.04
22 13 0.02
23 340 0.56
24 213 0.35
25 10 0.02
ACGTcount: A:0.28, C:0.13, G:0.18, T:0.41
Consensus pattern (23 bp):
GTCCAATTTAGTATATATATGCT
Found at i:55257828 original size:70 final size:70
Alignment explanation
Indices: 55257755--55258563 Score: 1040
Period size: 70 Copynumber: 11.6 Consensus size: 70
55257745 GTCCAATTCA
* *
55257755 GTGTCTATATGCTATCCAATTTTGGTGTAAAAATGTTGTCCAATTTTATATATATATGCTGTCCA
1 GTGTCTATATGCTATCCAATTTTGGTGTAAAAATGTTGTCCAATTTGATATATATATGCTGCCCA
*
55257820 ATTTA
66 ATTTG
* * * * * ** * * *
55257825 GTGTTTATATGCTGTCAAAATTTGGTGTGAAAATGCAGTCAAATTTGGTATATATATGCTGCCTA
1 GTGTCTATATGCTATCCAATTTTGGTGTAAAAATGTTGTCCAATTTGATATATATATGCTGCCCA
55257890 ATTTG
66 ATTTG
* * *
55257895 GTGTCTATATGCTGTTCAATTTTGGTGTAAAAAATGTTGTCCAATTTGGTATATATATGCTGCCC
1 GTGTCTATATGCTATCCAATTTTGGTGT-AAAAATGTTGTCCAATTTGATATATATATGCTGCCC
*
55257960 AATTCG
65 AATTTG
* *
55257966 GTGTCTATA---TATCCAATTTTGGTGTAAAAATGTTGTCCAATTTGGTATATATATGCTACCCA
1 GTGTCTATATGCTATCCAATTTTGGTGTAAAAATGTTGTCCAATTTGATATATATATGCTGCCCA
55258028 ATTTG
66 ATTTG
* * * *
55258033 GTGTCTATATGTTGTCCAATTTTGGTGTAAAAATGCTGTCCAATTTGCTATATATATGCTGCCCA
1 GTGTCTATATGCTATCCAATTTTGGTGTAAAAATGTTGTCCAATTTGATATATATATGCTGCCCA
55258098 ATTTG
66 ATTTG
* * * * *
55258103 GTGTATATATGCTGTCAAATTTTGGTGTAAGAATGTTGTCCAATTT-AGTATATATATGCTGTCC
1 GTGTCTATATGCTATCCAATTTTGGTGTAAAAATGTTGTCCAATTTGA-TATATATATGCTGCCC
*
55258167 AATTCG
65 AATTTG
* * *
55258173 GTGTCTATATGCAATCCAATTTTGGTGTAAAAATGCTGTCCAATTTGCTATATATATGCTGCCCA
1 GTGTCTATATGCTATCCAATTTTGGTGTAAAAATGTTGTCCAATTTGATATATATATGCTGCCCA
55258238 ATTTG
66 ATTTG
* * * *
55258243 GTGTATATATGCTGTCAAATTTTGGTGTAAGAATGTTGTCCAATTT-AGTATATATATGCTGCCC
1 GTGTCTATATGCTATCCAATTTTGGTGTAAAAATGTTGTCCAATTTGA-TATATATATGCTGCCC
55258307 AATTTG
65 AATTTG
* * * * * *
55258313 GTGTATATATGCTGTCAAATTTTGGTGTAAGAATGTTGTCCAATTT-AGTATATTTATGCTGTCC
1 GTGTCTATATGCTATCCAATTTTGGTGTAAAAATGTTGTCCAATTTGA-TATATATATGCTGCCC
*
55258377 AATTCG
65 AATTTG
*
55258383 GTGTCTATATGCAATCCAATTTTGGTGTAAAAATGTTGTCCAATTTGATATATATAT--TGCCCA
1 GTGTCTATATGCTATCCAATTTTGGTGTAAAAATGTTGTCCAATTTGATATATATATGCTGCCCA
55258446 ATTTG
66 ATTTG
* * * ** *
55258451 GTGTATAAATGCTATCCAATTTTTGTGTAAAAATGTTGTCCAATTTGATATATATATATTTCCCA
1 GTGTCTATATGCTATCCAATTTTGGTGTAAAAATGTTGTCCAATTTGATATATATATGCTGCCCA
55258516 ATTTG
66 ATTTG
* * * *
55258521 GTGTATAAATGCTATCCAATTTTGGTGTATAAATGCTGTCCAA
1 GTGTCTATATGCTATCCAATTTTGGTGTAAAAATGTTGTCCAA
55258564 ACAGGGTAAT
Statistics
Matches: 655, Mismatches: 74, Indels: 20
0.87 0.10 0.03
Matches are distributed among these distances:
67 49 0.07
68 76 0.12
70 484 0.74
71 46 0.07
ACGTcount: A:0.28, C:0.13, G:0.18, T:0.41
Consensus pattern (70 bp):
GTGTCTATATGCTATCCAATTTTGGTGTAAAAATGTTGTCCAATTTGATATATATATGCTGCCCA
ATTTG
Found at i:55258242 original size:210 final size:209
Alignment explanation
Indices: 55257745--55258563 Score: 1193
Period size: 208 Copynumber: 3.9 Consensus size: 209
55257735 TTCGGTTCAA
* * *
55257745 GTCCAATTCAGTGTCTATATGCTATCCAATTTTGGTGTAAAAATGTTGTCCAATTTTATATATAT
1 GTCCAATTCGGTGTCTATATGCAATCCAATTTTGGTGTAAAAATGTTGTCCAATTTGATATATAT
* * * * * * *
55257810 ATGCTGTCCAATTTAGTGTTTATATGCTGTCAAAATTTGGTGTGAAAATGCAGTCAAATTTGGTA
66 ATGCTGCCCAATTTGGTGTATATATGCTGTCAAATTTTGGTGTAAAAATGCTGTCCAATTT-GTA
* * *
55257875 TATATATGCTGCCTAATTTGGTGTCTATATGCTGTTC-AATTTTGGTGTAAAAAATGTTGTCCAA
130 TATATATGCTGCCCAATTTGGTGTATATATGCTG-TCAAATTTTGGTGT-AAGAATGTTGTCCAA
*
55257939 TTTGGTATATATATGCT
193 TTTAGTATATATATGCT
* *
55257956 GCCCAATTCGGTGTCTATAT---ATCCAATTTTGGTGTAAAAATGTTGTCCAATTTGGTATATAT
1 GTCCAATTCGGTGTCTATATGCAATCCAATTTTGGTGTAAAAATGTTGTCCAATTTGATATATAT
* * * *
55258018 ATGCTACCCAATTTGGTGTCTATATGTTGTCCAATTTTGGTGTAAAAATGCTGTCCAATTTGCTA
66 ATGCTGCCCAATTTGGTGTATATATGCTGTCAAATTTTGGTGTAAAAATGCTGTCCAATTTG-TA
55258083 TATATATGCTGCCCAATTTGGTGTATATATGCTGTCAAATTTTGGTGTAAGAATGTTGTCCAATT
130 TATATATGCTGCCCAATTTGGTGTATATATGCTGTCAAATTTTGGTGTAAGAATGTTGTCCAATT
55258148 TAGTATATATATGCT
195 TAGTATATATATGCT
* *
55258163 GTCCAATTCGGTGTCTATATGCAATCCAATTTTGGTGTAAAAATGCTGTCCAATTTGCTATATAT
1 GTCCAATTCGGTGTCTATATGCAATCCAATTTTGGTGTAAAAATGTTGTCCAATTTGATATATAT
* *
55258228 ATGCTGCCCAATTTGGTGTATATATGCTGTCAAATTTTGGTGTAAGAATGTTGTCCAATTTAGTA
66 ATGCTGCCCAATTTGGTGTATATATGCTGTCAAATTTTGGTGTAAAAATGCTGTCCAATTT-GTA
55258293 TATATATGCTGCCCAATTTGGTGTATATATGCTGTCAAATTTTGGTGTAAGAATGTTGTCCAATT
130 TATATATGCTGCCCAATTTGGTGTATATATGCTGTCAAATTTTGGTGTAAGAATGTTGTCCAATT
*
55258358 TAGTATATTTATGCT
195 TAGTATATATATGCT
55258373 GTCCAATTCGGTGTCTATATGCAATCCAATTTTGGTGTAAAAATGTTGTCCAATTTGATATATAT
1 GTCCAATTCGGTGTCTATATGCAATCCAATTTTGGTGTAAAAATGTTGTCCAATTTGATATATAT
* * * * *
55258438 AT--TGCCCAATTTGGTGTATAAATGCTATCCAATTTTTGTGTAAAAATGTTGTCCAATTTGATA
66 ATGCTGCCCAATTTGGTGTATATATGCTGTCAAATTTTGGTGTAAAAATGCTGTCCAATTTG-TA
** * * * * *
55258501 TATATATATTTCCCAATTTGGTGTATAAATGCTATCCAATTTTGGTGTATA-AATGCTGTCCAA
130 TATATATGCTGCCCAATTTGGTGTATATATGCTGTCAAATTTTGGTGTA-AGAATGTTGTCCAA
55258564 ACAGGGTAAT
Statistics
Matches: 558, Mismatches: 42, Indels: 19
0.90 0.07 0.03
Matches are distributed among these distances:
207 53 0.09
208 244 0.44
209 1 0.00
210 241 0.43
211 19 0.03
ACGTcount: A:0.28, C:0.13, G:0.18, T:0.41
Consensus pattern (209 bp):
GTCCAATTCGGTGTCTATATGCAATCCAATTTTGGTGTAAAAATGTTGTCCAATTTGATATATAT
ATGCTGCCCAATTTGGTGTATATATGCTGTCAAATTTTGGTGTAAAAATGCTGTCCAATTTGTAT
ATATATGCTGCCCAATTTGGTGTATATATGCTGTCAAATTTTGGTGTAAGAATGTTGTCCAATTT
AGTATATATATGCT
Found at i:55265077 original size:44 final size:43
Alignment explanation
Indices: 55265027--55265135 Score: 123
Period size: 44 Copynumber: 2.5 Consensus size: 43
55265017 TATGTATTGT
* * *
55265027 CGTGTAAGACCACGTCTGGGACATTGGCATCGACT-TGTGATTTA
1 CGTGTAAGACCACGTCTGGGACAGTGACATCGA-TATGTG-CTTA
*
55265071 CGTGTAAGACC-CTGTTTGGGACAGTGACATCGATATGTGCTTA
1 CGTGTAAGACCAC-GTCTGGGACAGTGACATCGATATGTGCTTA
* *
55265114 CATGTAAGACCACATCTGGGAC
1 CGTGTAAGACCACGTCTGGGAC
55265136 GATAGCGTTG
Statistics
Matches: 55, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
43 22 0.40
44 33 0.60
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACAGTGACATCGATATGTGCTTA
Found at i:55266009 original size:23 final size:23
Alignment explanation
Indices: 55265983--55266035 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
55265973 AAAATTCTAT
* *
55265983 CCAATTTGGTATTTATATGCTGC
1 CCAATTTGGTATATAAATGCTGC
* *
55266006 CCAATTTGGTGTATAAATGCTGT
1 CCAATTTGGTATATAAATGCTGC
55266029 CCAATTT
1 CCAATTT
55266036 TTGTGTATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.42
Consensus pattern (23 bp):
CCAATTTGGTATATAAATGCTGC
Found at i:55267019 original size:77 final size:81
Alignment explanation
Indices: 55266938--55267117 Score: 208
Period size: 83 Copynumber: 2.3 Consensus size: 81
55266928 ATGACAATAT
*
55266938 TAAATCCTGAAACAGAATTATTTAATTAAATATT-GTCTGGAAACAAAATC-A-A-AATAAAACC
1 TAAATCCTGAAACAGAATTATTTAATTAAATATTCGTCTAGAAACAAAATCAATAGAATAAAACC
* *
55266999 TGTTAAGCGGCGGGAA
66 TATTAAACGGCGGGAA
* * * * *
55267015 TAAATCCCGAAACAGAATTATTTGATTAAGTATTCTTTTAGAAACAAAATCAAGATAGAATAAAA
1 TAAATCCTGAAACAGAATTATTTAATTAAATATTCGTCTAGAAACAAAATC-A-ATAGAATAAAA
*
55267080 TCTATTAAACGGCGGGAA
64 CCTATTAAACGGCGGGAA
* *
55267098 TAAATCTTAAAACA-AATTAT
1 TAAATCCTGAAACAGAATTAT
55267118 ACAATTTAAT
Statistics
Matches: 85, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
77 31 0.36
78 13 0.15
81 1 0.01
82 7 0.08
83 33 0.39
ACGTcount: A:0.47, C:0.12, G:0.13, T:0.28
Consensus pattern (81 bp):
TAAATCCTGAAACAGAATTATTTAATTAAATATTCGTCTAGAAACAAAATCAATAGAATAAAACC
TATTAAACGGCGGGAA
Found at i:55267101 original size:83 final size:82
Alignment explanation
Indices: 55266938--55267295 Score: 268
Period size: 82 Copynumber: 4.3 Consensus size: 82
55266928 ATGACAATAT
* *
55266938 TAAATCCTGAAACAGAATTATTTAATTAA-ATATTGTCTGGAAACAAAATC---A-A-AATAAAA
1 TAAATCCTGAAACAGAATTATTTAATTAATAT-TTATTTGGAAACAAAATCAAAATAGAATAAAA
* * *
55266997 CCTGTTAAGCGGCGGGAA
65 TCTATTAAACGGCGGGAA
* * * *
55267015 TAAATCCCGAAACAGAATTATTTGATTAAGTATTCT-TTTAGAAACAAAATCAAGATAGAATAAA
1 TAAATCCTGAAACAGAATTATTTAATTAA-TATT-TATTTGGAAACAAAATCAAAATAGAATAAA
55267079 ATCTATTAAACGGCGGGAA
64 ATCTATTAAACGGCGGGAA
* * ** * * * *
55267098 TAAATCTTAAAACA-AATTATACAATTTAAT-TCTAATTTGGAAACCAAATTAAAATCGAATAAA
1 TAAATCCTGAAACAGAATTATTTAA-TTAATAT-TTATTTGGAAACAAAATCAAAATAGAATAAA
* * **
55267161 ATCTTTTAAACTGCAAGAA
64 ATCTATTAAACGGCGGGAA
* * *
55267180 TAAATCCTGAAACA-AATTCTATTTAATTTTAATATTTGTTTGGAAATAAAAACAAAATAGAGAA
1 TAAATCCTGAAACAGAA-T-TATTTAA--TTAATATTTATTTGGAAACAAAATCAAAAT--AGAA
*
55267244 TAAAATCTATTGAACGGCGGGGAA
60 TAAAATCTATTAAACGGC-GGGAA
* ** *
55267268 AAAATCCCAAAACAGATTTTATTTAATT
1 TAAATCCTGAAACAGA-ATTATTTAATT
55267296 TAAAATTTTA
Statistics
Matches: 218, Mismatches: 43, Indels: 31
0.75 0.15 0.11
Matches are distributed among these distances:
77 27 0.12
78 14 0.06
79 3 0.01
81 2 0.01
82 62 0.28
83 38 0.17
84 5 0.02
85 23 0.11
86 3 0.01
87 18 0.08
88 21 0.10
89 2 0.01
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.30
Consensus pattern (82 bp):
TAAATCCTGAAACAGAATTATTTAATTAATATTTATTTGGAAACAAAATCAAAATAGAATAAAAT
CTATTAAACGGCGGGAA
Found at i:55267457 original size:22 final size:21
Alignment explanation
Indices: 55267432--55267473 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
55267422 AGCGAACAAA
55267432 AATATATAAATATAAATAAAAG
1 AATATATAAATAT-AATAAAAG
* *
55267454 AATATTTATATATAATAAAA
1 AATATATAAATATAATAAAA
55267474 TAAATTGAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (21 bp):
AATATATAAATATAATAAAAG
Found at i:55267488 original size:28 final size:28
Alignment explanation
Indices: 55267433--55267498 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
55267423 GCGAACAAAA
55267433 ATATATAAATATAAATAAAAGAATATTT
1 ATATATAAATATAAATAAAAGAATATTT
*
55267461 ATATAT-AATA-AAATAAATTGAATAATTT
1 ATATATAAATATAAATAAA-AGAAT-ATTT
*
55267489 ATATTTAAAT
1 ATATATAAAT
55267499 TATCGGATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
26 7 0.21
27 8 0.24
28 15 0.45
29 3 0.09
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (28 bp):
ATATATAAATATAAATAAAAGAATATTT
Found at i:55272683 original size:16 final size:16
Alignment explanation
Indices: 55272659--55272705 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
55272649 TTTGGTTCGC
*
55272659 TGTATTGGAATAGAGG
1 TGTAATGGAATAGAGG
*
55272675 TGTAATGGAATAGATG
1 TGTAATGGAATAGAGG
*
55272691 CGTAATGGAATAGAG
1 TGTAATGGAATAGAG
55272706 ACATAATAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.36, C:0.02, G:0.34, T:0.28
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:55272774 original size:44 final size:46
Alignment explanation
Indices: 55272694--55272782 Score: 137
Period size: 44 Copynumber: 2.0 Consensus size: 46
55272684 ATAGATGCGT
*
55272694 AATGGAATAGAGACATAATAGGTAATTCTTTTGTTTGGTTGAATGG
1 AATGGAATAGAGACATAATAGGTAATTCTTGTGTTTGGTTGAATGG
* *
55272740 AATGGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTGGTTGAATG
1 AATGGAATAGAGACATAATAGGTAATTCTTGTGTTTGGTTGAATG
55272783 TAATAGAGGT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 20 0.50
45 3 0.08
46 17 0.43
ACGTcount: A:0.29, C:0.04, G:0.29, T:0.37
Consensus pattern (46 bp):
AATGGAATAGAGACATAATAGGTAATTCTTGTGTTTGGTTGAATGG
Found at i:55272782 original size:39 final size:44
Alignment explanation
Indices: 55272694--55272799 Score: 114
Period size: 39 Copynumber: 2.5 Consensus size: 44
55272684 ATAGATGCGT
* * *
55272694 AATGGAATAGAGACATAATAGGTAATTCTTTTGTTTGGTTGAATGG
1 AATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTT--ATGG
55272740 AATGGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTGG-T-T-G
1 AATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTATGG
* *
55272779 AATGTAATAGAGGTGTAATAG
1 AATGGAATAGAGGCGTAATAG
55272800 CATAAGGAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
39 18 0.33
40 2 0.04
43 1 0.02
44 13 0.24
45 3 0.06
46 17 0.31
ACGTcount: A:0.31, C:0.04, G:0.29, T:0.36
Consensus pattern (44 bp):
AATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTATGG
Found at i:55272998 original size:18 final size:17
Alignment explanation
Indices: 55272946--55273080 Score: 86
Period size: 18 Copynumber: 8.0 Consensus size: 17
55272936 TTATTATTAA
55272946 ATATAATTTAATAAAAAT
1 ATATAATTTAAT-AAAAT
55272964 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
*
55272981 ATATGAATTTACTAAAAT
1 ATAT-AATTTAATAAAAT
* * * *
55272999 -CATAATAT-ATGATACT
1 ATATAATTTAAT-AAAAT
* *
55273015 ATATAATATAATTTGAAAT
1 ATATAATTTAA--TAAAAT
* *
55273034 A-ATTA-TT-ATTAAAT
1 ATATAATTTAATAAAAT
55273048 ATAT--TTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
55273064 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
55273081 TCTTAATAAT
Statistics
Matches: 91, Mismatches: 14, Indels: 25
0.70 0.11 0.19
Matches are distributed among these distances:
14 8 0.09
15 4 0.04
16 17 0.19
17 25 0.27
18 33 0.36
19 3 0.03
20 1 0.01
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:55277008 original size:82 final size:82
Alignment explanation
Indices: 55276788--55277010 Score: 279
Period size: 84 Copynumber: 2.7 Consensus size: 82
55276778 TCTTCGTTTA
* * * *
55276788 GAAACAAAATCAAGATCGAATAAAATATGTTAATCGACGGGAATAAATCTCGAAACAGATTATTC
1 GAAACAAAATCAAAATCGAATAAAATATGTTAAACG-CGGGAATAAATCTCGAAACAAATTATAC
55276853 AATTTAATTCTAATTTGG
65 AATTTAATTCTAATTTGG
* * * * *
55276871 G-AACAATAAAACAAAATCGAATAGAATCTGTTAAATGGCGGGAATAAATCCCGAAACAAATTAT
1 GAAAC-A-AAATCAAAATCGAATAAAATATGTTAAA-CGCGGGAATAAATCTCGAAACAAATTAT
55276935 ACAATTTAATTCTAATTT-G
63 ACAATTTAATTCTAATTTGG
* * *
55276954 GAAACCAAATTAAAATCGAATAAAATTTGTTAAACAGCGGGAATAAATCTCGAAACA
1 GAAACAAAATCAAAATCGAATAAAATATGTTAAAC-GCGGGAATAAATCTCGAAACA
55277011 TATATTAGTT
Statistics
Matches: 119, Mismatches: 16, Indels: 11
0.82 0.11 0.08
Matches are distributed among these distances:
82 47 0.39
83 4 0.03
84 67 0.56
85 1 0.01
ACGTcount: A:0.47, C:0.13, G:0.14, T:0.26
Consensus pattern (82 bp):
GAAACAAAATCAAAATCGAATAAAATATGTTAAACGCGGGAATAAATCTCGAAACAAATTATACA
ATTTAATTCTAATTTGG
Found at i:55282634 original size:25 final size:25
Alignment explanation
Indices: 55282606--55282653 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
55282596 AAAATTACAT
*
55282606 TAAAAATATTTTTTAAAAGAAAAGG
1 TAAAAATAATTTTTAAAAGAAAAGG
*
55282631 TAAAAATAATTTTTAACAGAAAA
1 TAAAAATAATTTTTAAAAGAAAA
55282654 TACGAAGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.58, C:0.02, G:0.08, T:0.31
Consensus pattern (25 bp):
TAAAAATAATTTTTAAAAGAAAAGG
Found at i:55289378 original size:44 final size:44
Alignment explanation
Indices: 55289315--55289495 Score: 124
Period size: 44 Copynumber: 4.2 Consensus size: 44
55289305 GTTTGATGCG
* * *
55289315 ATCTGCT-CTCTGTAACTTCAGAGAGATAAGATCTGTGGCTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGATTTA
* ** ** *
55289358 ATCCGCTCCACTGCAACTTCA-AGGAGATGGGAT-TGGTTTATTTT
1 ATCTGCTCCACTGCAACTTCAGA-GAGATAAGATCT-GTGGATTTA
* * ***
55289402 GTCTGCTCCACTGCAACTTCAGGGAGATAAGA-C-G-GGATGCG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGATTTA
* *** *
55289443 ATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTAAAGTTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGATTTA
55289486 ATCTGCTCCA
1 ATCTGCTCCA
55289496 TAGGATTGAT
Statistics
Matches: 100, Mismatches: 29, Indels: 17
0.68 0.20 0.12
Matches are distributed among these distances:
40 22 0.22
41 9 0.09
42 1 0.01
43 17 0.17
44 51 0.51
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (44 bp):
ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGATTTA
Found at i:55289715 original size:45 final size:46
Alignment explanation
Indices: 55289600--55289715 Score: 128
Period size: 46 Copynumber: 2.5 Consensus size: 46
55289590 ATTTTGATCC
* * *
55289600 CTTCCACTGCAACTTCAGGGAGATAGGATTTACTATCTTCAGTCTA
1 CTTCCACTGCAACTTCAGGGAGATAAGACTTACTATCCTCAGTCTA
** * * *
55289646 CTTCTGCTGCAACCTCAGGGAGATAAGACTTGCTATCCTCAAT-TCA
1 CTTCCACTGCAACTTCAGGGAGATAAGACTTACTATCCTCAGTCT-A
*
55289692 C-TCCACTGCAACTTTAGGGAGATA
1 CTTCCACTGCAACTTCAGGGAGATA
55289716 GGATTATTGG
Statistics
Matches: 57, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
45 20 0.35
46 37 0.65
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (46 bp):
CTTCCACTGCAACTTCAGGGAGATAAGACTTACTATCCTCAGTCTA
Found at i:55289992 original size:100 final size:100
Alignment explanation
Indices: 55289772--55290193 Score: 488
Period size: 100 Copynumber: 4.2 Consensus size: 100
55289762 ATTCGCCATC
* * * * * * * *
55289772 TTCAATCTGTTTGACTGTAATGTCGGGGAAACAAGATTCACCGTCGTAGCTTCAATATGTTCCAC
1 TTCAATCTTTTTAATTGCAATGTCGGGGAAACCAGATCCACCGTCGTGGCTTCAATCTGTTCCAC
** * *
55289837 TACA-CTTCAGGGAAGTAAAATTCGCCGTTGT-GA
66 TACACCGCCAAGGAAGTAAGATTCGCCGTTGTGGA
* ** * ** *** *
55289870 CTTCAATCTTTTTAATTGCAATGTCAGGGAAATTAGATTCGTCGTCGCACCTTCAATCTGCTCCA
1 -TTCAATCTTTTTAATTGCAATGTCGGGGAAACCAGATCCACCGTCGTGGCTTCAATCTGTTCCA
* * *
55289935 CTGCACAGCTAAGGAAGTAAGATTCGCCGTTGTGGA
65 CTACACCGCCAAGGAAGTAAGATTCGCCGTTGTGGA
* ** *
55289971 TTCAACCTTTTTAATCACAATGTCGGGGAAACCAGATCCACCATCGTGGCTTCAATCTGTTCCTA
1 TTCAATCTTTTTAATTGCAATGTCGGGGAAACCAGATCCACCGTCGTGGCTTCAATCTGTTCC-A
* *
55290036 CTACACCGCCAAGGAAGTAAGATTCGCCCTTGTGGC
65 CTACACCGCCAAGGAAGTAAGATTCGCCGTTGTGGA
* *
55290072 TTCAATCTTTTTAATTGCAATATCGGGGAAACCAGATCCACCGTCGTGGCTTCAATCTATTCCAC
1 TTCAATCTTTTTAATTGCAATGTCGGGGAAACCAGATCCACCGTCGTGGCTTCAATCTGTTCCAC
* *
55290137 TACACCGCCAAGGAAGTAAGATTCGCCTTTGTGGC
66 TACACCGCCAAGGAAGTAAGATTCGCCGTTGTGGA
*
55290172 TTCAATCTTTTTAATTGTAATG
1 TTCAATCTTTTTAATTGCAATG
55290194 CCAAAGAGAT
Statistics
Matches: 272, Mismatches: 48, Indels: 5
0.84 0.15 0.02
Matches are distributed among these distances:
99 55 0.20
100 126 0.46
101 91 0.33
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (100 bp):
TTCAATCTTTTTAATTGCAATGTCGGGGAAACCAGATCCACCGTCGTGGCTTCAATCTGTTCCAC
TACACCGCCAAGGAAGTAAGATTCGCCGTTGTGGA
Found at i:55290078 original size:201 final size:199
Alignment explanation
Indices: 55289790--55290186 Score: 515
Period size: 201 Copynumber: 2.0 Consensus size: 199
55289780 GTTTGACTGT
* * ** *
55289790 AATGTCGGGGAAACAAGATTCACCGTCGTAGCTTCAATATGTTCCACTACACTTCAGGGAAGTAA
1 AATGTCGGGGAAACAAGATCCACCATCGTAGCTTCAATATGTTCCACTACACGCCAAGGAAGTAA
* * ** * **
55289855 AATTCGCCGTTGTGACTTCAATCTTTTTAATTGCAATGTCAGGGAAATTAGATTCGTCGTCGCAC
66 AATTCGCCCTTGTGACTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCACCGTCGCAC
* * *
55289920 CTTCAATCTGCTCCACTGCACAGCTAAGGAAGTAAGATTCGCCGTTGTGGATTCAACCTTTTTAA
131 CTTCAATCTACTCCACTACACAGCCAAGGAAGTAAGATTCGCCGTTGTGGATTCAACCTTTTTAA
55289985 TCAC
196 TCAC
* * *
55289989 AATGTCGGGGAAACCAGATCCACCATCGTGGCTTCAATCTGTTCCTACTACACCGCCAAGGAAGT
1 AATGTCGGGGAAACAAGATCCACCATCGTAGCTTCAATATGTTCC-ACTACA-CGCCAAGGAAGT
* * * *
55290054 AAGATTCGCCCTTGTGGCTTCAATCTTTTTAATTGCAATATCGGGGAAACCAGATCCACCGTCGT
64 AAAATTCGCCCTTGTGACTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCACCGTCGC
** * * * * *
55290119 GGCTTCAATCTATTCCACTACACCGCCAAGGAAGTAAGATTCGCCTTTGTGGCTTCAATCTTTTT
129 ACCTTCAATCTACTCCACTACACAGCCAAGGAAGTAAGATTCGCCGTTGTGGATTCAACCTTTTT
55290184 AAT
194 AAT
55290187 TGTAATGCCA
Statistics
Matches: 167, Mismatches: 29, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
199 40 0.24
200 6 0.04
201 121 0.72
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.29
Consensus pattern (199 bp):
AATGTCGGGGAAACAAGATCCACCATCGTAGCTTCAATATGTTCCACTACACGCCAAGGAAGTAA
AATTCGCCCTTGTGACTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCACCGTCGCAC
CTTCAATCTACTCCACTACACAGCCAAGGAAGTAAGATTCGCCGTTGTGGATTCAACCTTTTTAA
TCAC
Found at i:55290171 original size:50 final size:50
Alignment explanation
Indices: 55290016--55290179 Score: 139
Period size: 50 Copynumber: 3.3 Consensus size: 50
55290006 ATCCACCATC
*
55290016 GTGGCTTCAATCTGTTCCTACTACACCGCCAAGGAAGTAAGATTCGCCCTT
1 GTGGCTTCAATCTATTCC-ACTACACCGCCAAGGAAGTAAGATTCGCCCTT
* ** * * **** ** *** * * * *
55290067 GTGGCTTCAATCTTTTTAATTGCAATATCGGGGAAACCAGATCCACCGTC
1 GTGGCTTCAATCTATTCCACTACACCGCCAAGGAAGTAAGATTCGCCCTT
*
55290117 GTGGCTTCAATCTATTCCACTACACCGCCAAGGAAGTAAGATTCGCCTTT
1 GTGGCTTCAATCTATTCCACTACACCGCCAAGGAAGTAAGATTCGCCCTT
55290167 GTGGCTTCAATCT
1 GTGGCTTCAATCT
55290180 TTTTAATTGT
Statistics
Matches: 77, Mismatches: 36, Indels: 1
0.68 0.32 0.01
Matches are distributed among these distances:
50 62 0.81
51 15 0.19
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (50 bp):
GTGGCTTCAATCTATTCCACTACACCGCCAAGGAAGTAAGATTCGCCCTT
Found at i:55290197 original size:50 final size:50
Alignment explanation
Indices: 55289847--55290197 Score: 130
Period size: 50 Copynumber: 7.0 Consensus size: 50
55289837 TACACTTCAG
* * * * *
55289847 GGAAGTAAAATTCGCCGTTGTGACTTCAATCTTTTTAATTGCAATGTCAG
1 GGAAGTAAGATTCGCCCTTGTGGCTTCAATCTTTTTAATTGCAATGCCAA
* * * * * *** ** ** * *
55289897 GGAAATTAGATTCGTCGTCGCACCTTCAATCTGCTCCACTGCACA-GCTAA
1 GGAAGTAAGATTCGCCCTTGTGGCTTCAATCTTTTTAATTGCA-ATGCCAA
* * * ** * **
55289947 GGAAGTAAGATTCGCCGTTGTGGATTCAACCTTTTTAATCACAATGTCGG
1 GGAAGTAAGATTCGCCCTTGTGGCTTCAATCTTTTTAATTGCAATGCCAA
*** * * * * * * * **
55289997 GGAAACCAGATCCACCATCGTGGCTTCAATCTGTTCCT-ACTACACCGCCAA
1 GGAAGTAAGATTCGCCCTTGTGGCTTCAATCT-TT-TTAATTGCAATGCCAA
** **
55290048 GGAAGTAAGATTCGCCCTTGTGGCTTCAATCTTTTTAATTGCAATATCGG
1 GGAAGTAAGATTCGCCCTTGTGGCTTCAATCTTTTTAATTGCAATGCCAA
*** * * * * * ** * * **
55290098 GGAAACCAGATCCACCGTCGTGGCTTCAATCTATTCCACTACACCGCCAA
1 GGAAGTAAGATTCGCCCTTGTGGCTTCAATCTTTTTAATTGCAATGCCAA
* *
55290148 GGAAGTAAGATTCGCCTTTGTGGCTTCAATCTTTTTAATTGTAATGCCAA
1 GGAAGTAAGATTCGCCCTTGTGGCTTCAATCTTTTTAATTGCAATGCCAA
55290198 AGAGATAGGA
Statistics
Matches: 194, Mismatches: 102, Indels: 10
0.63 0.33 0.03
Matches are distributed among these distances:
49 2 0.01
50 157 0.81
51 34 0.18
52 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.30
Consensus pattern (50 bp):
GGAAGTAAGATTCGCCCTTGTGGCTTCAATCTTTTTAATTGCAATGCCAA
Found at i:55290358 original size:50 final size:50
Alignment explanation
Indices: 55290257--55290360 Score: 129
Period size: 50 Copynumber: 2.1 Consensus size: 50
55290247 TCCAAGTCTT
* *
55290257 AACGCCAGGGAGATAAGATTCACCGTCGTGGCTTCAATCTGCTCCGCTGC
1 AACGCCAGGGAGATAAGATTCACCGTCGTGGCTTCAATCTACTCCACTGC
* * * * *
55290307 AACGCCAGGGA-AGTAAGATTCGCTGTTGTGGCTTCAATCTATTCCATTGC
1 AACGCCAGGGAGA-TAAGATTCACCGTCGTGGCTTCAATCTACTCCACTGC
55290357 AACG
1 AACG
55290361 TCAAGGCGAT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
49 1 0.02
50 45 0.98
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (50 bp):
AACGCCAGGGAGATAAGATTCACCGTCGTGGCTTCAATCTACTCCACTGC
Found at i:55290484 original size:88 final size:88
Alignment explanation
Indices: 55290381--55290641 Score: 360
Period size: 88 Copynumber: 3.0 Consensus size: 88
55290371 AAAACTGATG
* * * * * * *
55290381 TCTTCGATCTGCTTCGCTGCCAGTACAGGAAGGCAAAATCTGTTATTTTCAACTTACTCCACTAC
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGC
* *
55290446 TGCTCAGGGAGACAAAGCTGGTA
66 TGCTCAGGGAGATAAAGCTGGGA
*
55290469 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCAACCTACTCCACTGC
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGC
* *
55290534 TGCTCAGGGAGATAAGGCTGGGG
66 TGCTCAGGGAGATAAAGCTGGGA
* * * * * *
55290557 TTTTCAATCTACTTCGCTGCCAATACAGGAAGACAAGATTTGCCATTTTCAACCTACTCCAATGT
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGC
55290622 TGCTCAGGGAGATAAAGCTG
66 TGCTCAGGGAGATAAAGCTG
55290642 AGGTTTCACT
Statistics
Matches: 153, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
88 153 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (88 bp):
TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGC
TGCTCAGGGAGATAAAGCTGGGA
Found at i:55290608 original size:45 final size:45
Alignment explanation
Indices: 55290477--55290614 Score: 127
Period size: 45 Copynumber: 3.1 Consensus size: 45
55290467 TATCTTCGAT
* *
55290477 CTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCAAC
1 CTACTTCGCTGCCAATACAGGAAGACAAGATCTGCCATTTTCAAC
* * *** * * * *** *
55290522 CTACTCCACTGCTGCT-CAGGGAGATAAG-GCTGGGGTTTTCAAT
1 CTACTTCGCTGCCAATACAGGAAGACAAGATCTGCCATTTTCAAC
*
55290565 CTACTTCGCTGCCAATACAGGAAGACAAGATTTGCCATTTTCAAC
1 CTACTTCGCTGCCAATACAGGAAGACAAGATCTGCCATTTTCAAC
55290610 CTACT
1 CTACT
55290615 CCAATGTTGC
Statistics
Matches: 65, Mismatches: 26, Indels: 4
0.68 0.27 0.04
Matches are distributed among these distances:
43 20 0.31
44 20 0.31
45 25 0.38
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (45 bp):
CTACTTCGCTGCCAATACAGGAAGACAAGATCTGCCATTTTCAAC
Found at i:55296961 original size:12 final size:12
Alignment explanation
Indices: 55296940--55296973 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
55296930 CCCAAATGCT
*
55296940 TATTTGAACAAA
1 TATTTAAACAAA
*
55296952 TATTTAAACAAC
1 TATTTAAACAAA
55296964 TATTTAAACA
1 TATTTAAACA
55296974 CGTTGTGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.50, C:0.12, G:0.03, T:0.35
Consensus pattern (12 bp):
TATTTAAACAAA
Found at i:55303982 original size:16 final size:17
Alignment explanation
Indices: 55303961--55303994 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
55303951 ACAAAATTAT
*
55303961 TAGTAA-AAGGTTAATA
1 TAGTAATAAGGTAAATA
55303977 TAGTAATAAGGTAAATA
1 TAGTAATAAGGTAAATA
55303994 T
1 T
55303995 TAACTTTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.50, C:0.00, G:0.18, T:0.32
Consensus pattern (17 bp):
TAGTAATAAGGTAAATA
Found at i:55304926 original size:42 final size:42
Alignment explanation
Indices: 55304872--55304968 Score: 158
Period size: 42 Copynumber: 2.3 Consensus size: 42
55304862 TATGAACGGA
* *
55304872 ACTAAGTGTGCGAAATTAAAATAATGATGTTGGATAATGGGT
1 ACTAAGTGTGCGAAATTAAAATAATGATATTGGATAATGGGC
* *
55304914 ACTAAGTGTGCGAAATTAAAATGATGATATTGTATAATGGGC
1 ACTAAGTGTGCGAAATTAAAATAATGATATTGGATAATGGGC
55304956 ACTAAGTGTGCGA
1 ACTAAGTGTGCGA
55304969 TACCGAGAGC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.37, C:0.07, G:0.26, T:0.30
Consensus pattern (42 bp):
ACTAAGTGTGCGAAATTAAAATAATGATATTGGATAATGGGC
Found at i:55313965 original size:27 final size:27
Alignment explanation
Indices: 55313935--55314012 Score: 79
Period size: 26 Copynumber: 2.9 Consensus size: 27
55313925 AATTTCCCCA
*
55313935 TGTTTACTATCTTGACGGACTATCTCG
1 TGTTTATTATCTTGACGGACTATCTCG
* *
55313962 TGTTTATTTTCTGGTA--GACTATCTCG
1 TGTTTATTATCTTG-ACGGACTATCTCG
* * *
55313988 TGTTTATTGTCCTGACGAACTATCT
1 TGTTTATTATCTTGACGGACTATCT
55314013 ACGATGTCAT
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
25 1 0.02
26 21 0.51
27 18 0.44
28 1 0.02
ACGTcount: A:0.18, C:0.19, G:0.18, T:0.45
Consensus pattern (27 bp):
TGTTTATTATCTTGACGGACTATCTCG
Found at i:55316557 original size:45 final size:45
Alignment explanation
Indices: 55316385--55316580 Score: 198
Period size: 45 Copynumber: 4.4 Consensus size: 45
55316375 ATGTCATAGT
* ** * * *
55316385 GTCTTTCAA-TAATGGTCTTATTCGTTTGATTCATGATGCTATAACA
1 GTCTTTCAACT-ATGGTCTTACTCGTTAAAATCATGATACCATAA-A
* * * * *
55316431 -TCTTTCAACTATGGTCTTACTTGTTAGAATCGTGATGCCATAAC
1 GTCTTTCAACTATGGTCTTACTCGTTAAAATCATGATACCATAAA
** * *
55316475 GTCTTTCAGTTATCGTCTTACTCGTTAAAATCGTGATACCATAAA
1 GTCTTTCAACTATGGTCTTACTCGTTAAAATCATGATACCATAAA
* *
55316520 GTCTTTCAACTATGGTCTTACTCGTTAAAATCATGATACCTTAAT
1 GTCTTTCAACTATGGTCTTACTCGTTAAAATCATGATACCATAAA
*
55316565 GTCTTTCAGCTATGGT
1 GTCTTTCAACTATGGT
55316581 ATGATACCTT
Statistics
Matches: 127, Mismatches: 21, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
45 126 0.99
46 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.40
Consensus pattern (45 bp):
GTCTTTCAACTATGGTCTTACTCGTTAAAATCATGATACCATAAA
Found at i:55316630 original size:74 final size:74
Alignment explanation
Indices: 55316508--55316654 Score: 172
Period size: 74 Copynumber: 2.0 Consensus size: 74
55316498 GTTAAAATCG
* *
55316508 TGATACCATAAAGTCTTTCAACTATGGTCTTACTCGTTAAAATCATGATACCTTAATGTCTTTCA
1 TGATACCATAAAGTCTTTCAACTATAGTCTTACTCGTTAAAATCATGATACCATAATGTCTTTCA
*
55316573 GCTATGGTA
66 ACTATGGTA
* * ** * * *
55316582 TGATACCTTAACA-TCTTTCAGCTATAGTCTTACTCGTTTCCAAT-ATGATGCCATAGTTTCTTT
1 TGATACCATAA-AGTCTTTCAACTATAGTCTTACTCG-TTAAAATCATGATACCATAATGTCTTT
55316645 CAACTATGGT
64 CAACTATGGT
55316655 CTTATTCAAT
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
74 55 0.90
75 6 0.10
ACGTcount: A:0.27, C:0.20, G:0.13, T:0.39
Consensus pattern (74 bp):
TGATACCATAAAGTCTTTCAACTATAGTCTTACTCGTTAAAATCATGATACCATAATGTCTTTCA
ACTATGGTA
Found at i:55317308 original size:16 final size:16
Alignment explanation
Indices: 55317287--55317321 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
55317277 AGTCCTTGTA
55317287 ATTTTA-TCACTTTAAC
1 ATTTTAGTC-CTTTAAC
55317303 ATTTTAGTCCTTTAAC
1 ATTTTAGTCCTTTAAC
55317319 ATT
1 ATT
55317322 AAAATTACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.29, C:0.17, G:0.03, T:0.51
Consensus pattern (16 bp):
ATTTTAGTCCTTTAAC
Found at i:55322108 original size:21 final size:21
Alignment explanation
Indices: 55322082--55322124 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
55322072 TTTTGCCTAA
* *
55322082 AATATGAATTTGATTGAATTG
1 AATATGAATTTCATTAAATTG
55322103 AATATGAATTTCATTAAATTG
1 AATATGAATTTCATTAAATTG
55322124 A
1 A
55322125 GTTAAATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.42, C:0.02, G:0.14, T:0.42
Consensus pattern (21 bp):
AATATGAATTTCATTAAATTG
Found at i:55327941 original size:27 final size:27
Alignment explanation
Indices: 55327906--55327959 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
55327896 ATCAGGTTAT
*
55327906 AATCATGCATTTTAAACACTGTACATA
1 AATCATGCATTTCAAACACTGTACATA
*
55327933 AATCATGCATTTCAAACATTGTACATA
1 AATCATGCATTTCAAACACTGTACATA
55327960 TCAATCATAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.41, C:0.19, G:0.07, T:0.33
Consensus pattern (27 bp):
AATCATGCATTTCAAACACTGTACATA
Found at i:55330668 original size:35 final size:35
Alignment explanation
Indices: 55330608--55330726 Score: 179
Period size: 34 Copynumber: 3.4 Consensus size: 35
55330598 GATAATTAAA
* *
55330608 CCGAAACACACCAGATGCTCATAAGACCTAATCCAT
1 CCGAAACACACCA-ATGCTCATAAGAGCTAGTCCAT
55330644 CCGAAACACACCAATGCTCATAAGAGCTAGTCCAAT
1 CCGAAACACACCAATGCTCATAAGAGCTAGTCC-AT
*
55330680 -CG-AACACACCAATGCTCATAAGAGCTAGTCCAA
1 CCGAAACACACCAATGCTCATAAGAGCTAGTCCAT
55330713 CCGAAACACACCAA
1 CCGAAACACACCAA
55330727 AACAGTGAGT
Statistics
Matches: 77, Mismatches: 3, Indels: 7
0.89 0.03 0.08
Matches are distributed among these distances:
33 1 0.01
34 31 0.40
35 30 0.39
36 15 0.19
ACGTcount: A:0.40, C:0.33, G:0.13, T:0.14
Consensus pattern (35 bp):
CCGAAACACACCAATGCTCATAAGAGCTAGTCCAT
Found at i:55340381 original size:33 final size:33
Alignment explanation
Indices: 55340343--55340406 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
55340333 AGGCCATCAG
* *
55340343 AATTAGAATGAGGC-AGATGAGATCCAGCCCAAC
1 AATTAGAATGAGGCGA-ATGAGACCCAACCCAAC
*
55340376 AATTAGAATTAGGCGAATGAGACCCAACCCA
1 AATTAGAATGAGGCGAATGAGACCCAACCCA
55340407 TGTACAATTG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
33 26 0.96
34 1 0.04
ACGTcount: A:0.41, C:0.22, G:0.22, T:0.16
Consensus pattern (33 bp):
AATTAGAATGAGGCGAATGAGACCCAACCCAAC
Found at i:55353447 original size:24 final size:24
Alignment explanation
Indices: 55353432--55353483 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
55353422 AATCAAAGTC
55353432 AAATATATTATGCTAATAAATGCT
1 AAATATATTATGCTAATAAATGCT
* * *
55353456 AAATATATTATACTCATAAATACT
1 AAATATATTATGCTAATAAATGCT
55353480 AAAT
1 AAAT
55353484 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATGCTAATAAATGCT
Found at i:55356886 original size:512 final size:512
Alignment explanation
Indices: 55355922--55356948 Score: 1784
Period size: 512 Copynumber: 2.0 Consensus size: 512
55355912 TATTTTTATT
* *
55355922 TGTTTTCCCATATGTTTTTCAATAATAGTTTTCCAAGACTTAAATGCGGAAAACATATCTCTTTT
1 TGTTTTCCCATATATTTTTCAATAATAGTTTTCCAAGACTTAAATACGGAAAACATATCTCTTTT
* * **
55355987 TTGTTTCAGGAAGAACACCCAAACTTTTCTAAAAAAATCATCAATAAAAGTTAGGATATAATTAG
66 CTATTTCAGGAAGAACACCCAAACTTTTCTAAAAAAATCATCAATAAAAGTTAACATATAATTAG
*
55356052 CTCCACTTCTCAAAGCCACTCTAGACGACCCCCACAGATCAGAATGAATATACTCCAACATTCCC
131 CTCCACTTCTCAAAGCCACTCTAGACGACCCCCACAGATCAGAATGAATAAACTCCAACATTCCC
* *
55356117 TTCGTGTTATGGATTCCTCTGGTGAATCGAACTCTCTTTTCCTTCCCAAAAACGCAGTGCTCATA
196 TTCGTGTTATGGATTCCTCTAGTGAATCGAACTCTCTTTTCCTTCCCAAAAACGCAGTGCTCACA
* * *
55356182 GAATTTTAGTTTGCAAATTCCTTGCCCATCAAGAAGTCTTCTTTTGCTCAATTCTATTATGTCAT
261 GAACTTTAGTTTGCAAATTCCTTGCCCATCAAGAAGTCCTCTTTTGCTCAATTCTATCATGTCAT
55356247 TCTCACTCATATGCCCTAGGCACATATGCCAAAGTTTAGTAATATCATCATCTGACAAGGAAGAG
326 TCTCACTCATATGCCCTAGGCACATATGCCAAAGTTTAGTAATATCATCATCTGACAAGGAAGAG
* * *
55356312 GAAGCGACAGCTGCATCACCAGTAACAGTAGAACCTTGTAAAACATATACCTTGACAGTCTTTCT
391 GAAACGACAGCTGCATCACCAGTAACAGTAGAACCATGTAAAACATATAACTTGACAGTCTTTCT
*
55356377 CTACCTTTTCATCACAACGAGGGAACCCTTGGAAAGCTTCAAAACCTCACTTTCAGC
456 CTACCCTTTCATCACAACGAGGGAACCCTTGGAAAGCTTCAAAACCTCACTTTCAGC
*
55356434 TGTTTTCCCATCTATTTTTCAATAATAGTTTTCCAAGACTTAAATACGGAAAACATATCTCTTTT
1 TGTTTTCCCATATATTTTTCAATAATAGTTTTCCAAGACTTAAATACGGAAAACATATCTCTTTT
** *
55356499 CTATTTTTGGAAGAATACCCAAACTTTTCTAAAAAAATCATCAATAAAAGTTAACATATAATTAG
66 CTATTTCAGGAAGAACACCCAAACTTTTCTAAAAAAATCATCAATAAAAGTTAACATATAATTAG
* * *
55356564 CTCCACTTCTCGAAGGCACTCTGGACGACCCCCACAGATCAGAATGAATAAACTCCAACATTCCC
131 CTCCACTTCTCAAAGCCACTCTAGACGACCCCCACAGATCAGAATGAATAAACTCCAACATTCCC
*
55356629 TTCGTGTTATGGATTCCTCTAGTGAATCGAACTCTCTTTTGCTTCCCAAAAACGCAGTGCTCACA
196 TTCGTGTTATGGATTCCTCTAGTGAATCGAACTCTCTTTTCCTTCCCAAAAACGCAGTGCTCACA
*
55356694 GAACTTTAGTTTGCAAATTCCTTGCCCATCAAGAAGTCCTCTTTTGCTCAATTCTGTCATGTCAT
261 GAACTTTAGTTTGCAAATTCCTTGCCCATCAAGAAGTCCTCTTTTGCTCAATTCTATCATGTCAT
**
55356759 TCTCACTCATATGCCCTAGGTGCATATGCCAAAGTTTAGTAATATCATCATCTGACAAGGAAGAG
326 TCTCACTCATATGCCCTAGGCACATATGCCAAAGTTTAGTAATATCATCATCTGACAAGGAAGAG
* *
55356824 GAAATGACAGCTGCATCACCAGTAACAGTAGAACCATGTAAAACATATAACTTGGCAGTCTTTCT
391 GAAACGACAGCTGCATCACCAGTAACAGTAGAACCATGTAAAACATATAACTTGACAGTCTTTCT
*
55356889 CTACCCTTTCATCACAACGAGGGAACCCTTGGAAAGCTTCAAAACCTCACTTTTAGC
456 CTACCCTTTCATCACAACGAGGGAACCCTTGGAAAGCTTCAAAACCTCACTTTCAGC
55356946 TGT
1 TGT
55356949 GTATCTGTAC
Statistics
Matches: 485, Mismatches: 30, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
512 485 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (512 bp):
TGTTTTCCCATATATTTTTCAATAATAGTTTTCCAAGACTTAAATACGGAAAACATATCTCTTTT
CTATTTCAGGAAGAACACCCAAACTTTTCTAAAAAAATCATCAATAAAAGTTAACATATAATTAG
CTCCACTTCTCAAAGCCACTCTAGACGACCCCCACAGATCAGAATGAATAAACTCCAACATTCCC
TTCGTGTTATGGATTCCTCTAGTGAATCGAACTCTCTTTTCCTTCCCAAAAACGCAGTGCTCACA
GAACTTTAGTTTGCAAATTCCTTGCCCATCAAGAAGTCCTCTTTTGCTCAATTCTATCATGTCAT
TCTCACTCATATGCCCTAGGCACATATGCCAAAGTTTAGTAATATCATCATCTGACAAGGAAGAG
GAAACGACAGCTGCATCACCAGTAACAGTAGAACCATGTAAAACATATAACTTGACAGTCTTTCT
CTACCCTTTCATCACAACGAGGGAACCCTTGGAAAGCTTCAAAACCTCACTTTCAGC
Found at i:55358366 original size:24 final size:24
Alignment explanation
Indices: 55358339--55358395 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
55358329 AAACCTAATT
55358339 CTAATCAAA-GTCAAATATATTATG
1 CTAAT-AAATGTCAAATATATTATG
* *
55358363 CTAATAAATGTTAAATATATTATA
1 CTAATAAATGTCAAATATATTATG
*
55358387 CTCATAAAT
1 CTAATAAAT
55358396 ACTAAATCTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 3 0.10
24 26 0.90
ACGTcount: A:0.47, C:0.11, G:0.05, T:0.37
Consensus pattern (24 bp):
CTAATAAATGTCAAATATATTATG
Found at i:55358401 original size:24 final size:24
Alignment explanation
Indices: 55358351--55358402 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
55358341 AATCAAAGTC
* **
55358351 AAATATATTATGCTAATAAATGTT
1 AAATATATTATACTAATAAATACT
*
55358375 AAATATATTATACTCATAAATACT
1 AAATATATTATACTAATAAATACT
55358399 AAAT
1 AAAT
55358403 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:55360367 original size:63 final size:65
Alignment explanation
Indices: 55360292--55360431 Score: 189
Period size: 64 Copynumber: 2.2 Consensus size: 65
55360282 CCCAGCCGTG
* *
55360292 CACACGAC-CGTGTTTTCTG-CCCGTGTGGTC-CTAAATCACAAACAATGAGTCACACGGCCTGG
1 CACACG-CTCGTGTTCTCTGACCCGTGTGATCTCTAAATCACAAACAATGAGTCACACGGCCTGG
55360354 A
65 A
* *
55360355 CACACGCTCGTG-TCTCTGACCCGTGTGATCTCTAAATCACAAACAGTGAGTCACATGGCCTGGA
1 CACACGCTCGTGTTCTCTGACCCGTGTGATCTCTAAATCACAAACAATGAGTCACACGGCCTGGA
* *
55360419 CACATGCTTGTGT
1 CACACGCTCGTGT
55360432 CATTGGCCCG
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
62 6 0.09
63 20 0.30
64 41 0.61
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (65 bp):
CACACGCTCGTGTTCTCTGACCCGTGTGATCTCTAAATCACAAACAATGAGTCACACGGCCTGGA
Found at i:55362824 original size:41 final size:38
Alignment explanation
Indices: 55362780--55362914 Score: 119
Period size: 40 Copynumber: 3.4 Consensus size: 38
55362770 GACTTTGAGT
*
55362780 CGATGAGACACTGGGTGTCAATTTACTACTTCGGATTAATT
1 CGATGAGACACTGGGTGTCAA-TTA-TACTTCGGATT-ATC
* * * * * * *
55362821 CGATAAGGCACTGGGAGCCAATT-TACTTCTGTTTAGC
1 CGATGAGACACTGGGTGTCAATTATACTTCGGATTATC
* *
55362858 CGATGAGACACTGAGTGTCAAATTATTACTTCGAATTATC
1 CGATGAGACACTGGGTGTC-AATTA-TACTTCGGATTATC
*
55362898 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
55362915 CCAAACTGGT
Statistics
Matches: 72, Mismatches: 19, Indels: 7
0.73 0.19 0.07
Matches are distributed among these distances:
37 15 0.21
38 13 0.18
40 27 0.38
41 17 0.24
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (38 bp):
CGATGAGACACTGGGTGTCAATTATACTTCGGATTATC
Found at i:55364961 original size:20 final size:21
Alignment explanation
Indices: 55364936--55364985 Score: 57
Period size: 22 Copynumber: 2.4 Consensus size: 21
55364926 GAAAGGAGTA
*
55364936 AAAAGAAATAA-ACGAAAAAG
1 AAAAGAAAGAACACGAAAAAG
*
55364956 AAAAGAGAAGAACATGAAAAAG
1 AAAAGA-AAGAACACGAAAAAG
*
55364978 GAAAGAAA
1 AAAAGAAA
55364986 AAAAAAGATA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 6 0.24
21 6 0.24
22 13 0.52
ACGTcount: A:0.72, C:0.04, G:0.20, T:0.04
Consensus pattern (21 bp):
AAAAGAAAGAACACGAAAAAG
Found at i:55370891 original size:21 final size:21
Alignment explanation
Indices: 55370867--55370909 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
55370857 CATTCTTCCT
* *
55370867 TCTTAAATTCTCAATTTTCAA
1 TCTTAAATCCTCAATCTTCAA
*
55370888 TCTTCAATCCTCAATCTTCAA
1 TCTTAAATCCTCAATCTTCAA
55370909 T
1 T
55370910 ATCCATTTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.26, G:0.00, T:0.44
Consensus pattern (21 bp):
TCTTAAATCCTCAATCTTCAA
Found at i:55370955 original size:21 final size:20
Alignment explanation
Indices: 55370916--55370972 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 20
55370906 CAATATCCAT
*
55370916 TTTCCAATTTTATATTTTCAA
1 TTTCAAATTTTA-ATTTTCAA
*
55370937 TCTTGAAATTTTAATTTTCAA
1 T-TTCAAATTTTAATTTTCAA
55370958 TTTCAAATTTATAAT
1 TTTCAAATTT-TAAT
55370973 CCTTAGTCCA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
20 8 0.26
21 14 0.45
22 9 0.29
ACGTcount: A:0.33, C:0.11, G:0.02, T:0.54
Consensus pattern (20 bp):
TTTCAAATTTTAATTTTCAA
Found at i:55379526 original size:43 final size:43
Alignment explanation
Indices: 55379479--55379645 Score: 271
Period size: 43 Copynumber: 3.9 Consensus size: 43
55379469 AATCAATTAT
* * * * *
55379479 CGATGCCACTATCCCAGACAGGGTCTTATACGTAAATCATATA
1 CGATGCCAATGTCCCAGACATGATCTTACACGTAAATCATATA
55379522 CGATGCCAATGTCCCAGACATGATCTTACACGTAAATCATATA
1 CGATGCCAATGTCCCAGACATGATCTTACACGTAAATCATATA
*
55379565 CGATGCCAATGTCCCAGACATAATCTTACACGTAAATCATATA
1 CGATGCCAATGTCCCAGACATGATCTTACACGTAAATCATATA
*
55379608 CGATGCCAATGTCCCAGACATGGTCTTACACGTAAATC
1 CGATGCCAATGTCCCAGACATGATCTTACACGTAAATC
55379646 TCAAATCAAT
Statistics
Matches: 116, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 116 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (43 bp):
CGATGCCAATGTCCCAGACATGATCTTACACGTAAATCATATA
Found at i:55384755 original size:44 final size:45
Alignment explanation
Indices: 55384702--55384804 Score: 127
Period size: 44 Copynumber: 2.3 Consensus size: 45
55384692 TGTCTTTGAC
* * * *
55384702 ATGGACTTACATGAATTATTCTTGTCTCCAATGCCATA-TATAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
** *
55384746 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATA-TTATAAT
55384792 ATGGACTTACATG
1 ATGGACTTACATG
55384805 GCTCATTTCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 32 0.64
46 18 0.36
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (45 bp):
ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
Found at i:55384803 original size:46 final size:44
Alignment explanation
Indices: 55384724--55384809 Score: 136
Period size: 46 Copynumber: 1.9 Consensus size: 44
55384714 GAATTATTCT
*
55384724 TGTCTCCAATGCCATATATAATATGGACTTACATGGCTCAATCC
1 TGTCTCCAAAGCCATATATAATATGGACTTACATGGCTCAATCC
*
55384768 TGTCTCCAAAGCCATATTTCTAATATGGACTTACATGGCTCA
1 TGTCTCCAAAGCCATA--TATAATATGGACTTACATGGCTCA
55384810 TTTCTGTTCT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 15 0.39
46 23 0.61
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (44 bp):
TGTCTCCAAAGCCATATATAATATGGACTTACATGGCTCAATCC
Found at i:55389534 original size:43 final size:43
Alignment explanation
Indices: 55389509--55389632 Score: 194
Period size: 43 Copynumber: 2.9 Consensus size: 43
55389499 AATCAATTAT
* *
55389509 CGATGCCACTGTCCCAGACAGGGTCTTATACGTAAATCATATA
1 CGATGCCAATGTCCCAGACATGGTCTTATACGTAAATCATATA
** *
55389552 CGATGCCAATGTCTTAGACATGGTCTTACACGTAAATCATATA
1 CGATGCCAATGTCCCAGACATGGTCTTATACGTAAATCATATA
*
55389595 CGATGCCAATGTCCCAGACATGGTCTTACACGTAAATC
1 CGATGCCAATGTCCCAGACATGGTCTTATACGTAAATC
55389633 TCAAATCAAT
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 74 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (43 bp):
CGATGCCAATGTCCCAGACATGGTCTTATACGTAAATCATATA
Found at i:55389663 original size:44 final size:43
Alignment explanation
Indices: 55389511--55389665 Score: 179
Period size: 43 Copynumber: 3.6 Consensus size: 43
55389501 TCAATTATCG
* * * * *
55389511 ATGCCACTGTCCCAGACAGGGTCTTATACGTAAATCATATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAATACA
** * *
55389554 ATGCCAATGTCTTAGACATGGTCTTACACGTAAATCATATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAATACA
55389597 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAAAT-CA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAA--TCAAATACA
*
55389641 ATGCC-ATCGTCCCAGACGTGGTCTT
1 ATGCCAAT-GTCCCAGACATGGTCTT
55389666 TCTCAATATT
Statistics
Matches: 99, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
43 72 0.73
44 22 0.22
45 5 0.05
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAATACA
Found at i:55393835 original size:41 final size:43
Alignment explanation
Indices: 55393729--55393842 Score: 144
Period size: 44 Copynumber: 2.7 Consensus size: 43
55393719 TAACCGTTAC
* **
55393729 ATGGTGGAATCAGCACTTAGCAACCACCTCATGTTCAAAGGAT
1 ATGGTGGAATCAGCACTTAGCAACCACCTTATAATCAAAGGAT
* *
55393772 CTCGGTGGAATCAGCACTTAGCAACCACCTTATAATC-AATGAT
1 AT-GGTGGAATCAGCACTTAGCAACCACCTTATAATCAAAGGAT
*
55393815 ATGG-GGAATCAGCACATAGCAACC-CCTT
1 ATGGTGGAATCAGCACTTAGCAACCACCTT
55393843 TTTGATCAAT
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
40 4 0.06
41 19 0.30
42 2 0.03
43 7 0.11
44 31 0.49
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.23
Consensus pattern (43 bp):
ATGGTGGAATCAGCACTTAGCAACCACCTTATAATCAAAGGAT
Found at i:55393851 original size:41 final size:41
Alignment explanation
Indices: 55393734--55393883 Score: 126
Period size: 41 Copynumber: 3.6 Consensus size: 41
55393724 GTTACATGGT
* ** * *
55393734 GGAATCAGCACTTAGCAACCACC-TCATGTTCAAAGGATCTCGGT
1 GGAATCAGCACTTAGCAACC-CCTTTATAATC-AATGAT-TC-GA
*
55393778 GGAATCAGCACTTAGCAACCACC-TTATAATCAATGATAT-GG
1 GGAATCAGCACTTAGCAACC-CCTTTATAATCAATGAT-TCGA
* * * *
55393819 GGAATCAGCACATAGCAACCCCTTTTTGATCAATTATTCGA
1 GGAATCAGCACTTAGCAACCCCTTTATAATCAATGATTCGA
*
55393860 GGAATCTGCACTTAGCAACCCCTT
1 GGAATCAGCACTTAGCAACCCCTT
55393884 ACATTCAAAA
Statistics
Matches: 91, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
40 3 0.03
41 54 0.59
43 6 0.07
44 28 0.31
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (41 bp):
GGAATCAGCACTTAGCAACCCCTTTATAATCAATGATTCGA
Found at i:55397199 original size:22 final size:22
Alignment explanation
Indices: 55397159--55397200 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
55397149 TGGATATGCC
*
55397159 ACCACTAATTTGTAAATAAATT
1 ACCACTAATTTGCAAATAAATT
* *
55397181 ACCACTATTTTGCAGATAAA
1 ACCACTAATTTGCAAATAAA
55397201 ATGCCACTGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (22 bp):
ACCACTAATTTGCAAATAAATT
Found at i:55399378 original size:21 final size:21
Alignment explanation
Indices: 55399352--55399392 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
55399342 TGTAAATTTA
*
55399352 TAAAAATTCCAATAAAAATTC
1 TAAAAATTCCAAAAAAAATTC
*
55399373 TAAAAATTTCAAAAAAAATT
1 TAAAAATTCCAAAAAAAATT
55399393 AAAAAATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.61, C:0.10, G:0.00, T:0.29
Consensus pattern (21 bp):
TAAAAATTCCAAAAAAAATTC
Found at i:55399398 original size:21 final size:21
Alignment explanation
Indices: 55399353--55399419 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
55399343 GTAAATTTAT
* * **
55399353 AAAAATTCCAATAAAAATTCT
1 AAAAATTTCAAAAAAAATTAA
55399374 AAAAATTTCAAAAAAAATTAA
1 AAAAATTTCAAAAAAAATTAA
*
55399395 AAAATATATT--TAAAAAATTAA
1 AAAA-AT-TTCAAAAAAAATTAA
55399416 AAAA
1 AAAA
55399420 TTAAAACTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
21 35 0.90
22 2 0.05
23 2 0.05
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (21 bp):
AAAAATTTCAAAAAAAATTAA
Found at i:55401443 original size:6 final size:6
Alignment explanation
Indices: 55401432--55401460 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
55401422 AATTGAGCAA
55401432 CCATCT CCATCT CCATCT CCATCT CCATC
1 CCATCT CCATCT CCATCT CCATCT CCATC
55401461 ACGTTTTACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.52, G:0.00, T:0.31
Consensus pattern (6 bp):
CCATCT
Found at i:55405984 original size:23 final size:23
Alignment explanation
Indices: 55405936--55405984 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
55405926 TTCTTTTCTC
* * *
55405936 ATTTTTTTTTCTCTTAGGTTTTT
1 ATTTTTTTTTCTCTTAAGATTGT
55405959 ATTTGTTTTTT-TCTTAAGATTGT
1 ATTT-TTTTTTCTCTTAAGATTGT
55405982 ATT
1 ATT
55405985 GACCCTTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 16 0.73
24 6 0.27
ACGTcount: A:0.14, C:0.06, G:0.10, T:0.69
Consensus pattern (23 bp):
ATTTTTTTTTCTCTTAAGATTGT
Found at i:55409807 original size:23 final size:22
Alignment explanation
Indices: 55409680--55409928 Score: 178
Period size: 23 Copynumber: 10.7 Consensus size: 22
55409670 ATATATATAT
55409680 AAAATTGGACAGCATTTATACATC
1 AAAATTGGACAGCA-TTATACA-C
* * *
55409704 AAAATTTGATAGCATGTATATAC
1 AAAATTGGACAGCAT-TATACAC
* *
55409727 AAAATTGGACAACATTTATTCACC
1 AAAATTGGACAGCA-TTATACA-C
55409751 AAAATTAGG-CAGCA-TATACATAC
1 AAAATT-GGACAGCATTATAC--AC
* *
55409774 TAATTTGGACAGCACTTATACAC
1 AAAATTGGACAGCA-TTATACAC
* **
55409797 AAAATTTGACAGCATGTATATGC
1 AAAATTGGACAGCAT-TATACAC
*
55409820 AAAATTGGACAGCATTTATTCACC
1 AAAATTGGACAGCA-TTATACA-C
* * *
55409844 AAAATTGGGCAGCATACATATAC
1 AAAATTGGACAGCAT-TATACAC
* *
55409867 CAATTTGGACAGCACTTATACAC
1 AAAATTGGACAGCA-TTATACAC
* **
55409890 AAAATTTGACAGCATGTATATGC
1 AAAATTGGACAGCAT-TATACAC
55409913 AAAATTGGACAGCATT
1 AAAATTGGACAGCATT
55409929 TATTCACCAA
Statistics
Matches: 174, Mismatches: 36, Indels: 32
0.72 0.15 0.13
Matches are distributed among these distances:
22 9 0.05
23 109 0.63
24 49 0.28
25 7 0.04
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (22 bp):
AAAATTGGACAGCATTATACAC
Found at i:55409823 original size:93 final size:93
Alignment explanation
Indices: 55409684--55409952 Score: 439
Period size: 93 Copynumber: 2.9 Consensus size: 93
55409674 ATATATAAAA
* * * *
55409684 TTGGACAGCATTTATACATCAAAATTTGATAGCATGTATATACAAAATTGGACAACATTTATTCA
1 TTGGACAGCACTTATACA-CAAAATTTGACAGCATGTATATGCAAAATTGGACAGCATTTATTCA
* *
55409749 CCAAAATTAGGCAGCATATACATACTAAT
65 CCAAAATTAGGCAGCATACACATACCAAT
55409778 TTGGACAGCACTTATACACAAAATTTGACAGCATGTATATGCAAAATTGGACAGCATTTATTCAC
1 TTGGACAGCACTTATACACAAAATTTGACAGCATGTATATGCAAAATTGGACAGCATTTATTCAC
* *
55409843 CAAAATTGGGCAGCATACATATACCAAT
66 CAAAATTAGGCAGCATACACATACCAAT
55409871 TTGGACAGCACTTATACACAAAATTTGACAGCATGTATATGCAAAATTGGACAGCATTTATTCAC
1 TTGGACAGCACTTATACACAAAATTTGACAGCATGTATATGCAAAATTGGACAGCATTTATTCAC
* *
55409936 CAAAAATAGGTAGCATA
66 CAAAATTAGGCAGCATA
55409953 ATTAACACAA
Statistics
Matches: 164, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
93 147 0.90
94 17 0.10
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.28
Consensus pattern (93 bp):
TTGGACAGCACTTATACACAAAATTTGACAGCATGTATATGCAAAATTGGACAGCATTTATTCAC
CAAAATTAGGCAGCATACACATACCAAT
Found at i:55409951 original size:47 final size:47
Alignment explanation
Indices: 55409673--55409940 Score: 315
Period size: 47 Copynumber: 5.7 Consensus size: 47
55409663 AGCATATATA
* * *
55409673 TATATATAAAATTGGACAGCATTTATACATCAAAATTTGATAGCATG
1 TATATACAAAATTGGACAGCATTTATACACCAAAATTTGACAGCATG
* * * * *
55409720 TATATACAAAATTGGACAACATTTATTCACCAAAATTAGGCAGCATA
1 TATATACAAAATTGGACAGCATTTATACACCAAAATTTGACAGCATG
* * * *
55409767 TACATACTAATTTGGACAGCACTTATACA-CAAAATTTGACAGCATG
1 TATATACAAAATTGGACAGCATTTATACACCAAAATTTGACAGCATG
* * * * *
55409813 TATATGCAAAATTGGACAGCATTTATTCACCAAAATTGGGCAGCATA
1 TATATACAAAATTGGACAGCATTTATACACCAAAATTTGACAGCATG
* * * *
55409860 CATATACCAATTTGGACAGCACTTATACA-CAAAATTTGACAGCATG
1 TATATACAAAATTGGACAGCATTTATACACCAAAATTTGACAGCATG
* *
55409906 TATATGCAAAATTGGACAGCATTTATTCACCAAAA
1 TATATACAAAATTGGACAGCATTTATACACCAAAA
55409941 ATAGGTAGCA
Statistics
Matches: 178, Mismatches: 41, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
46 74 0.42
47 104 0.58
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.29
Consensus pattern (47 bp):
TATATACAAAATTGGACAGCATTTATACACCAAAATTTGACAGCATG
Found at i:55410742 original size:17 final size:16
Alignment explanation
Indices: 55410713--55410765 Score: 97
Period size: 16 Copynumber: 3.2 Consensus size: 16
55410703 TTTGGTTCGC
55410713 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
55410729 TGTATTGAGATTAGAGG
1 TGTATTG-GATTAGAGG
55410746 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
55410762 TGTA
1 TGTA
55410766 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
16 20 0.56
17 16 0.44
ACGTcount: A:0.26, C:0.00, G:0.36, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:55410830 original size:44 final size:45
Alignment explanation
Indices: 55410746--55410836 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
55410736 AGATTAGAGG
* * *
55410746 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
55410791 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
55410835 TG
1 TG
55410837 AAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:55410853 original size:39 final size:42
Alignment explanation
Indices: 55410756--55410859 Score: 115
Period size: 44 Copynumber: 2.5 Consensus size: 42
55410746 TGTATTGGAT
55410756 TAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAATGTAATGGAA
1 TAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAATG-AA--GAA
* ***
55410801 TAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAATG-A-AA
1 TAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAATGAAGAA
55410840 TAGAGGTGTAATAGCATAAT
1 TAGAGGTGTAATAGC-TAAT
55410860 GGAAAAAACT
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
39 15 0.29
41 4 0.08
42 1 0.02
44 19 0.37
45 13 0.25
ACGTcount: A:0.33, C:0.07, G:0.27, T:0.34
Consensus pattern (42 bp):
TAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAATGAAGAA
Found at i:55411018 original size:16 final size:16
Alignment explanation
Indices: 55410981--55411035 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
55410971 TTAATCATAT
*
55410981 TTAAACATA-ATTATAA
1 TTAAA-ATATATTTTAA
55410997 TT-AAATATATTTTAA
1 TTAAAATATATTTTAA
55411012 TTAAAATATATAATTTAA
1 TTAAAATATAT--TTTAA
55411030 -TAAAAT
1 TTAAAAT
55411036 TCTTATAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 3 0.09
15 10 0.29
16 10 0.29
17 6 0.18
18 5 0.15
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
TTAAAATATATTTTAA
Found at i:55411028 original size:18 final size:18
Alignment explanation
Indices: 55410987--55411035 Score: 61
Period size: 16 Copynumber: 2.9 Consensus size: 18
55410977 ATATTTAAAC
55410987 ATAATTATAATT-AAATAT
1 ATAATT-TAATTAAAATAT
55411005 AT--TTTAATTAAAATAT
1 ATAATTTAATTAAAATAT
55411021 ATAATTTAA-TAAAAT
1 ATAATTTAATTAAAAT
55411036 TCTTATAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
15 5 0.18
16 10 0.36
17 6 0.21
18 7 0.25
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
ATAATTTAATTAAAATAT
Found at i:55411154 original size:67 final size:67
Alignment explanation
Indices: 55411083--55411295 Score: 168
Period size: 67 Copynumber: 3.1 Consensus size: 67
55411073 ATTGTTAATG
*
55411083 TTATTTAAATTTTAATAAGATTATTATTATCAGTAATAAATATTTTAATCATATTTAAACATAAT
1 TTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATATTTTAATCATATTTAAACATAAT
55411148 TA
66 TA
* * * * * * ***
55411150 TTATTAAATATATTTTAATTAAAATATATAATT-T-AATAA-AATTCTTATAAT--TAGCAGAAA
1 TTATT---TAAATTTTAA-TAAGAT-TATTATTATCAATAATAAATATTTTAATCATA-TTTAAA
** * *
55411210 TTTGTTATTT
60 --CATAATTA
* *
55411220 TTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAACATAAT
1 TTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATATTTTAATCATATTTAAACATAAT
55411285 TA
66 TA
55411287 TTA-TTAAAT
1 TTATTTAAAT
55411296 ACATTATAAT
Statistics
Matches: 104, Mismatches: 29, Indels: 27
0.65 0.18 0.17
Matches are distributed among these distances:
65 5 0.05
66 12 0.12
67 28 0.27
68 11 0.11
69 12 0.12
70 24 0.23
71 6 0.06
72 6 0.06
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.47
Consensus pattern (67 bp):
TTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATATTTTAATCATATTTAAACATAAT
TA
Found at i:55411172 original size:156 final size:156
Alignment explanation
Indices: 55410888--55411215 Score: 611
Period size: 156 Copynumber: 2.1 Consensus size: 156
55410878 TAGAATACCC
* * *
55410888 TTAGCATAAAATTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
55410953 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAA
55411018 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
55411044 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
*
55411109 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAA
55411174 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
*
55411200 TTAGCAGAAATTTGTT
1 TTAGCAGAAAATTGTT
55411216 ATTTTTATTT
Statistics
Matches: 167, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
156 167 1.00
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.47
Consensus pattern (156 bp):
TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAA
TATATAATTTAATAAAATTCTTATAA
Found at i:55411178 original size:18 final size:17
Alignment explanation
Indices: 55411157--55411191 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
55411147 TTATTATTAA
*
55411157 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
55411175 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
55411192 TCTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:55411182 original size:137 final size:137
Alignment explanation
Indices: 55410893--55411329 Score: 289
Period size: 156 Copynumber: 3.1 Consensus size: 137
55410883 TACCCTTAGC
55410893 ATAAAATTATT-TTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTAT
1 ATAAAATTATTATTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTAT
*
55410957 CAGTAATAAATATTTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAATATA
66 CAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATA
55411022 TAATTTA
131 TAATTTA
* * * * * * *
55411029 ATAAAATTCTTATAATTAGCAGAAAATTG-TT-TTGGTAAATGATTATTGTTAATGTTATTTAA-
1 ATAAAA---TTATTATT-G--GTAAA-TGATTATT-GTTATTG-TTATT-TAAATTTTA-ATAAG
* * * * ** *
55411091 ATT-TTA--ATAAGATTATTATTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTA
55 ATTATTATTATCAG-TAATAAATAT-TTTAAT-CATA---T--T--T----AAACATAATTATTA
55411153 TTAAATATATTTTAATTAAAATATATAATTTA
106 TTAAATATATTTTAATTAAAATATATAATTTA
* *** * * * *
55411185 ATAAAATTCTTATAATTAGCA-GA-AATTTGTTATTTTTATTTAAATTTTAATAAGATTATTAAT
1 ATAAAATTATTATTGGTA-AATGATTA-TTGTTATTGTTATTTAAATTTTAATAAGATTATTATT
* * * * ****
55411248 ATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATACATTATAATTTTGGTA
64 ATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATA
55411313 TATAATTTA
129 TATAATTTA
55411322 ATAAAATT
1 ATAAAATT
55411330 CTTAATAATT
Statistics
Matches: 223, Mismatches: 44, Indels: 67
0.67 0.13 0.20
Matches are distributed among these distances:
136 6 0.03
137 48 0.22
139 4 0.02
140 2 0.01
141 2 0.01
142 6 0.03
143 19 0.09
144 14 0.06
145 14 0.06
146 3 0.01
147 3 0.01
148 14 0.06
149 13 0.06
150 12 0.05
151 6 0.03
152 1 0.00
153 5 0.02
156 51 0.23
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.47
Consensus pattern (137 bp):
ATAAAATTATTATTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTAT
CAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATA
TAATTTA
Found at i:55411330 original size:137 final size:138
Alignment explanation
Indices: 55411074--55411339 Score: 426
Period size: 137 Copynumber: 1.9 Consensus size: 138
55411064 TAAATGATTA
* * *
55411074 TTGTTAATGTTATTTAAATTTTAATAAGATTATTATTATCAGTAATAAATATTTTAATCATATTT
1 TTGTTAATGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTT
* *
55411139 AAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTT-ATAATTA
66 AAACATAATTATTATTAAATACATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
55411203 GCAGAAAT
131 GCAGAAAT
* *
55411211 TTGTTATTTTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTT
1 TTGTTAATGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTT
****
55411276 AAACATAATTATTATTAAATACATTATAATTTTGGTATATAATTTAATAAAATTCTTAATAATT
66 AAACATAATTATTATTAAATACATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATT
55411340 CATATTCTTA
Statistics
Matches: 117, Mismatches: 11, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
137 111 0.95
138 6 0.05
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.48
Consensus pattern (138 bp):
TTGTTAATGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTT
AAACATAATTATTATTAAATACATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
GCAGAAAT
Found at i:55411373 original size:137 final size:135
Alignment explanation
Indices: 55411095--55411373 Score: 339
Period size: 137 Copynumber: 2.0 Consensus size: 135
55411085 ATTTAAATTT
* * *
55411095 TAATAAGATTATTATTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATA
1 TAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATA
* * * *
55411160 TATTTTAATTAAAATATATAATTTAATAAAATTCTTATAATTAGCAGAAATTTGTTATTTTTATT
66 CATTATAATTAAAATATATAATTTAATAAAATTCTTATAATTA-CA-AAATTTGTTATATTTACT
* **
55411225 TAAATTT
129 CAAATCA
55411232 TAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATA
1 TAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATA
**** *
55411297 CATTATAATTTTGGTATATAATTTAATAAAATTCTTAATAATT-C-ATATTCT-TATATGAATTT
66 CATTATAATTAAAATATATAATTTAATAAAATTCTT-ATAATTACAAAATT-TGT-TAT--ATTT
55411359 ACTCAAATCA
126 ACTCAAATCA
55411369 TAATA
1 TAATA
55411374 TATGATACTA
Statistics
Matches: 122, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
134 5 0.04
135 4 0.03
136 1 0.01
137 106 0.87
138 6 0.05
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (135 bp):
TAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATA
CATTATAATTAAAATATATAATTTAATAAAATTCTTATAATTACAAAATTTGTTATATTTACTCA
AATCA
Found at i:55414829 original size:9 final size:9
Alignment explanation
Indices: 55414812--55414846 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
55414802 ATATTACAAC
*
55414812 AAAATTTTA
1 AAAAATTTA
55414821 AAAAATTTA
1 AAAAATTTA
55414830 AAAAATTT-
1 AAAAATTTA
55414838 AAAAATTTA
1 AAAAATTTA
55414847 GAAGAGTGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
8 8 0.33
9 16 0.67
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (9 bp):
AAAAATTTA
Found at i:55418631 original size:28 final size:28
Alignment explanation
Indices: 55418591--55418692 Score: 159
Period size: 28 Copynumber: 3.6 Consensus size: 28
55418581 CTCAATAATC
* *
55418591 AAACTCACACACTTAGTGCTTTACCATT
1 AAACTCGCACACTTAGTGCTTTACAATT
55418619 AAACTCGCACACTTAGTGCTTTACAATT
1 AAACTCGCACACTTAGTGCTTTACAATT
* *
55418647 AAACTCGCACATTTAGTGCTTCACAATT
1 AAACTCGCACACTTAGTGCTTTACAATT
*
55418675 AAATTCGCACACTTAGTG
1 AAACTCGCACACTTAGTG
55418693 TCGAAAGTCA
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 68 1.00
ACGTcount: A:0.32, C:0.25, G:0.11, T:0.31
Consensus pattern (28 bp):
AAACTCGCACACTTAGTGCTTTACAATT
Found at i:55423311 original size:33 final size:33
Alignment explanation
Indices: 55423269--55423341 Score: 110
Period size: 33 Copynumber: 2.2 Consensus size: 33
55423259 TTCCTTTTGG
55423269 AAATCAACAGTTTGCCATTGTATTTACTGTTGA
1 AAATCAACAGTTTGCCATTGTATTTACTGTTGA
* ** *
55423302 AAATCAACAGTTTGTCATTGTATTTGTTGTTGG
1 AAATCAACAGTTTGCCATTGTATTTACTGTTGA
55423335 AAATCAA
1 AAATCAA
55423342 GCACATTAGC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (33 bp):
AAATCAACAGTTTGCCATTGTATTTACTGTTGA
Found at i:55429164 original size:5 final size:5
Alignment explanation
Indices: 55429156--55429180 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
55429146 CCTTGCCCTG
55429156 CCCCA CCCCA CCCCA CCCCA CCCCA
1 CCCCA CCCCA CCCCA CCCCA CCCCA
55429181 TTCCGCTCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.80, G:0.00, T:0.00
Consensus pattern (5 bp):
CCCCA
Found at i:55432537 original size:49 final size:50
Alignment explanation
Indices: 55432461--55432563 Score: 154
Period size: 49 Copynumber: 2.1 Consensus size: 50
55432451 GCTTTGTTAG
*
55432461 ATTTATAATTTAGTCCCTCTTTGAATTTAACT-TGTTTATTGAAATTATT
1 ATTTATAATTTAGTCCCTATTTGAATTTAACTATGTTTATTGAAATTATT
* ** *
55432510 ATTTATAATTTAGTCCCTATTTTAATTTATTTATTTTTATTGAAATTATT
1 ATTTATAATTTAGTCCCTATTTGAATTTAACTATGTTTATTGAAATTATT
55432560 ATTT
1 ATTT
55432564 TTCCATATAA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
49 28 0.58
50 20 0.42
ACGTcount: A:0.29, C:0.08, G:0.06, T:0.57
Consensus pattern (50 bp):
ATTTATAATTTAGTCCCTATTTGAATTTAACTATGTTTATTGAAATTATT
Found at i:55441320 original size:25 final size:25
Alignment explanation
Indices: 55441292--55441340 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
55441282 TTTTCCATTA
* *
55441292 TACAGCCCAGATAAGCTTTCTGTTT
1 TACAGCCCACATAAGCTTCCTGTTT
* *
55441317 TACAGCTCACATGAGCTTCCTGTT
1 TACAGCCCACATAAGCTTCCTGTT
55441341 ATATGGCTTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.22, C:0.27, G:0.16, T:0.35
Consensus pattern (25 bp):
TACAGCCCACATAAGCTTCCTGTTT
Found at i:55459294 original size:18 final size:18
Alignment explanation
Indices: 55459271--55459312 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
55459261 GCCAGGTGTA
*
55459271 TATCCTAGCCCTTATATG
1 TATCCTAACCCTTATATG
55459289 TATCCTAACCCTTATATG
1 TATCCTAACCCTTATATG
*
55459307 TTTCCT
1 TATCCT
55459313 TTTCCCAATC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.21, C:0.29, G:0.07, T:0.43
Consensus pattern (18 bp):
TATCCTAACCCTTATATG
Found at i:55460220 original size:34 final size:33
Alignment explanation
Indices: 55460096--55460229 Score: 169
Period size: 34 Copynumber: 3.9 Consensus size: 33
55460086 GTTTAAAAAA
* *
55460096 TAAATTAAGGTTTAGAGTTTTTTTTAAAAATTAAT
1 TAAATTAGGGTTTAG-G-TTTTTTAAAAAATTAAT
* **
55460131 TAAATTAGGTTTTAGGGATTTTAAACAAATTAAT
1 TAAATTAGGGTTTAGGTTTTTTAAA-AAATTAAT
55460165 TAAATTAGGGTTTAGAGTTTTTTAAAAAATTAAT
1 TAAATTAGGGTTTAG-GTTTTTTAAAAAATTAAT
*
55460199 TAAATTAGGGTTTAGTTTTTTTAAAATAATT
1 TAAATTAGGGTTTAGGTTTTTTAAAA-AATT
55460230 TTGTGTTTAG
Statistics
Matches: 87, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
33 16 0.18
34 50 0.57
35 21 0.24
ACGTcount: A:0.40, C:0.01, G:0.13, T:0.46
Consensus pattern (33 bp):
TAAATTAGGGTTTAGGTTTTTTAAAAAATTAAT
Found at i:55460562 original size:126 final size:126
Alignment explanation
Indices: 55460283--55460563 Score: 384
Period size: 126 Copynumber: 2.2 Consensus size: 126
55460273 GGATTTTGTT
* * * *
55460283 TTTTCTCTACAGTAGTTTCAGAAAAATTAATTTTAAGAAGACGGTTCTAATAAGATAATGTCAAA
1 TTTT-TCTACAGTAGTTCCTGAAAAAATAATTTTAAGAAGACGGTTCTAATAAAATAATGTCAAA
* *
55460348 AATGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCAACGTGGACACTT
65 AATGCTTCAAGCAAGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCAACGTGGACACTC
* * * * *
55460410 TTTTTCTACAGTAGTTCCTGAGAAAATAATTTTTAGAAGACGGTTCTGAA-AAAATAGTTTTAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTAAGAAGACGGTTCT-AATAAAATAATGTCAAA
* * * * * *
55460474 AATGCTTTAAGCAAGATGCACTGTTAGCAAATTTACTGAAAAAAGCTCCCACGTGGACGCTC
65 AATGCTTCAAGCAAGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCAACGTGGACACTC
55460536 TTTTTCTACAGTAGTTCCTGAAAAAATA
1 TTTTTCTACAGTAGTTCCTGAAAAAATA
55460564 GTGTAAAAAA
Statistics
Matches: 135, Mismatches: 18, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
126 129 0.96
127 6 0.04
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (126 bp):
TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTAAGAAGACGGTTCTAATAAAATAATGTCAAAA
ATGCTTCAAGCAAGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCAACGTGGACACTC
Found at i:55460608 original size:98 final size:98
Alignment explanation
Indices: 55460455--55460650 Score: 284
Period size: 98 Copynumber: 2.0 Consensus size: 98
55460445 GAAGACGGTT
* * ** * * * *
55460455 CTGAAAAAATAGTTTTAAAAATGCTTTAAGCAAGATGCACTGTTAGCAAATTTACTGAAAAAAGC
1 CTGAAAAAATAGTGTAAAAAACACTTCAAGCAAGATGCACTGTCAACAAAATTACTGAAAAAAGC
* *
55460520 TCCCACGTGGACGCTCTTTTTCTACAGTAGTTC
66 TCCCACATGGACACTCTTTTTCTACAGTAGTTC
*
55460553 CTGAAAAAATAGTGTAAAAAACACTTCAAGCACGATGCACTGTCAACAAAATTACTGAAAAAAGC
1 CTGAAAAAATAGTGTAAAAAACACTTCAAGCAAGATGCACTGTCAACAAAATTACTGAAAAAAGC
*
55460618 TCTCACATGGACACTCTTTTTCTACAGTAGTTC
66 TCCCACATGGACACTCTTTTTCTACAGTAGTTC
55460651 TTGTTTGGCC
Statistics
Matches: 86, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
98 86 1.00
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.28
Consensus pattern (98 bp):
CTGAAAAAATAGTGTAAAAAACACTTCAAGCAAGATGCACTGTCAACAAAATTACTGAAAAAAGC
TCCCACATGGACACTCTTTTTCTACAGTAGTTC
Done.