Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 185 of 207
Found at i:56486967 original size:25 final size:25
Alignment explanation
Indices: 56486937--56486989 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
56486927 ATCAAATTAT
56486937 AATGACATGTCACTTTCAGAATCAG
1 AATGACATGTCACTTTCAGAATCAG
* *
56486962 AATGACATTTCATTTTCAGAATCAG
1 AATGACATGTCACTTTCAGAATCAG
56486987 AAT
1 AAT
56486990 AGCATATCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (25 bp):
AATGACATGTCACTTTCAGAATCAG
Found at i:56491510 original size:14 final size:13
Alignment explanation
Indices: 56491483--56491507 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
56491473 AAAAGAAAAG
56491483 AAAAAAAGGATTA
1 AAAAAAAGGATTA
56491496 AAAAAAAGGATT
1 AAAAAAAGGATT
56491508 TAAGAAGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (13 bp):
AAAAAAAGGATTA
Found at i:56492234 original size:3 final size:3
Alignment explanation
Indices: 56492226--56492305 Score: 117
Period size: 3 Copynumber: 26.3 Consensus size: 3
56492216 TTTGGTTACT
**
56492226 TTA TTA TTA AAA TTAA TTA GTT- TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TT-A TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA
56492272 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
56492306 CATTGCATTT
Statistics
Matches: 70, Mismatches: 4, Indels: 6
0.88 0.05 0.08
Matches are distributed among these distances:
2 2 0.03
3 63 0.90
4 5 0.07
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:56493497 original size:16 final size:16
Alignment explanation
Indices: 56493476--56493527 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
56493466 TTTGGTTCGC
*
56493476 TGTATTGGATTAAAGG
1 TGTATTGGATTAGAGG
56493492 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
56493508 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
56493524 TGTA
1 TGTA
56493528 ATAGCAAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.27, C:0.00, G:0.35, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:56493784 original size:18 final size:17
Alignment explanation
Indices: 56493763--56493797 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
56493753 TTATTATTAA
*
56493763 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
56493781 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
56493798 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:56493851 original size:157 final size:157
Alignment explanation
Indices: 56493652--56493966 Score: 594
Period size: 157 Copynumber: 2.0 Consensus size: 157
56493642 GAATACCCTA
* *
56493652 AGCATAAATTTGTTTTGGTAAATAATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATT
1 AGCAGAAATTTGTTTTGGTAAATAATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAAT
*
56493717 ATCAATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATA
66 ATCAATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATA
56493782 TATAATTTAATAAAATTCTTAATAATT
131 TATAATTTAATAAAATTCTTAATAATT
*
56493809 AGCAGAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAAT
1 AGCAGAAATTTGTTTTGGTAAATAATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAAT
56493874 ATCAATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATA
66 ATCAATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATA
56493939 TATAATTTAATAAAATTCTTAATAATT
131 TATAATTTAATAAAATTCTTAATAATT
56493966 A
1 A
56493967 ATATTCTTAT
Statistics
Matches: 154, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
157 154 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (157 bp):
AGCAGAAATTTGTTTTGGTAAATAATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAAT
ATCAATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATA
TATAATTTAATAAAATTCTTAATAATT
Found at i:56493937 original size:16 final size:16
Alignment explanation
Indices: 56493900--56493941 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
56493890 TTAATCATAT
*
56493900 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
56493916 TT-AAATATATTATAA
1 TTAAAATATATTATAA
56493931 TTAAAATATAT
1 TTAAAATATAT
56493942 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:56493948 original size:14 final size:15
Alignment explanation
Indices: 56493909--56493950 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
56493899 TTTAAACATA
*
56493909 ATTATTATTAAATAT
1 ATTATAATTAAATAT
56493924 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
56493938 A-TATAATTTAATA
1 ATTATAATTAAATA
56493951 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:56494038 original size:120 final size:121
Alignment explanation
Indices: 56493898--56494195 Score: 464
Period size: 120 Copynumber: 2.5 Consensus size: 121
56493888 TTTTAATCAT
*
56493898 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
*
56493963 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAAT-ATAA
66 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTAT-AAATGA-AA
56494020 A-TT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
56494083 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAATGAAA
66 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAATGAAA
* * * *
56494139 ATTTGAA-ATAATTAATA-TATCATATATT-TTATGTAAAATATATGATTTAATAAAATT
1 ATTTGAACATAATTATTATTA-AATATATTATAAT-TAAAATATATAATTTAATAAAATT
56494196 TAAAATAATT
Statistics
Matches: 166, Mismatches: 5, Indels: 12
0.91 0.03 0.07
Matches are distributed among these distances:
119 12 0.07
120 149 0.90
121 4 0.02
122 1 0.01
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (121 bp):
ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAATGAAA
Found at i:56494046 original size:157 final size:155
Alignment explanation
Indices: 56493702--56494032 Score: 378
Period size: 157 Copynumber: 2.1 Consensus size: 155
56493692 TTTAAATTTT
* * *
56493702 AATAAGATTATTATTATCAATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATAT
1 AATAACATAATTAATATCAATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATAT
* * * * * **
56493767 ATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAGAAATTTGTTTTGGTAAAT
66 ATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACACAAATATGATTTACTAAAT
* * * * *
56493832 TATTATTGTTATTGTTATTTAAATTTT
131 TAATATTGATACTGTTA--TAAATATA
* *
56493859 AATAAGATTATTAATATCAATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATAT
1 AATAACATAATTAATATCAATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATAT
* **
56493924 ATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTC
66 ATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACA--CAAATATG-ATTTACT-
56493989 AAATCATAATATATGATACTG-TA-AAATATA
127 AAAT--TAATAT-TGATACTGTTATAAATATA
56494019 AATTAACATAATTA
1 AA-TAACATAATTA
56494033 TTATTAAATA
Statistics
Matches: 148, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
157 107 0.72
159 4 0.03
160 11 0.07
161 13 0.09
163 7 0.05
164 6 0.04
ACGTcount: A:0.47, C:0.05, G:0.04, T:0.45
Consensus pattern (155 bp):
AATAACATAATTAATATCAATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATAT
ATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACACAAATATGATTTACTAAAT
TAATATTGATACTGTTATAAATATA
Found at i:56494068 original size:14 final size:15
Alignment explanation
Indices: 56494019--56494070 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
56494009 GTAAAATATA
56494019 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
56494034 TATTAAATATATTAT
1 AATTAAATATATTAT
56494049 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
56494062 AATTTAATA
1 AATTAAATA
56494071 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:56494309 original size:93 final size:91
Alignment explanation
Indices: 56494211--56494420 Score: 255
Period size: 93 Copynumber: 2.3 Consensus size: 91
56494201 TAATTATAAC
* * * * *
56494211 TAATAAATTATATTTTATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATTTAAATT
1 TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTT-AATA
*
56494275 GTTAATAT-TAAATTTCATAAAATTCTTGA
64 G-TAATATAT-AATTTCATAAAATTCTTAA
* *
56494304 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGT
1 TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGT
*
56494369 GATATATAATTTCATAAAATTCTTAA
66 AATATATAATTTCATAAAATTCTTAA
*
56494395 TAATAAAATGT-TCTTATATGAATTTA
1 TAAT-AAAT-TATATTATATGAATTTA
56494421 CTAAAATCAA
Statistics
Matches: 104, Mismatches: 9, Indels: 9
0.85 0.07 0.07
Matches are distributed among these distances:
91 27 0.26
92 24 0.23
93 50 0.48
94 3 0.03
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (91 bp):
TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGT
AATATATAATTTCATAAAATTCTTAA
Found at i:56497613 original size:29 final size:29
Alignment explanation
Indices: 56497581--56497696 Score: 117
Period size: 30 Copynumber: 3.9 Consensus size: 29
56497571 TAACCCTGTT
*
56497581 ACTTTTTGAAATTTACATTTTGACCCCAA
1 ACTTTTTGAAAATTACATTTTGACCCCAA
**
56497610 ACTTTTCT-AAAATTACATTTCAACCCCTAA
1 ACTTTT-TGAAAATTACATTTTGACCCC-AA
* * * *
56497640 ACTTTCTCAAAATTACACTTTGACCCTTAA
1 ACTTTTTGAAAATTACATTTTGACCC-CAA
* *
56497670 AATTTTTGAAAATTACATTTTGGCCCC
1 ACTTTTTGAAAATTACATTTTGACCCC
56497697 CATATTTTCC
Statistics
Matches: 69, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
29 23 0.33
30 46 0.67
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.39
Consensus pattern (29 bp):
ACTTTTTGAAAATTACATTTTGACCCCAA
Found at i:56497623 original size:30 final size:29
Alignment explanation
Indices: 56497593--56497725 Score: 119
Period size: 30 Copynumber: 4.5 Consensus size: 29
56497583 TTTTTGAAAT
56497593 TTACATTTTGACCCCAAACTTTTCTAAAA
1 TTACATTTTGACCCCAAACTTTTCTAAAA
**
56497622 TTACATTTCAACCCCTAAAC-TTTCTCAAAA
1 TTACATTTTGACCCC-AAACTTTTCT-AAAA
* * *
56497652 TTACACTTTGACCCTTAAAATTTT-TGAAAA
1 TTACATTTTGACCC-CAAACTTTTCT-AAAA
* *
56497682 TTACATTTTGGCCCCCATA-TTTTCCTAAAA
1 TTACATTTT-GACCCCAAACTTTT-CTAAAA
*
56497712 TTACATTTTTACCC
1 TTACATTTTGACCC
56497726 TAAATGTTTT
Statistics
Matches: 83, Mismatches: 14, Indels: 14
0.75 0.13 0.13
Matches are distributed among these distances:
29 25 0.30
30 50 0.60
31 8 0.10
ACGTcount: A:0.32, C:0.25, G:0.04, T:0.39
Consensus pattern (29 bp):
TTACATTTTGACCCCAAACTTTTCTAAAA
Found at i:56497644 original size:59 final size:60
Alignment explanation
Indices: 56497559--56497689 Score: 142
Period size: 59 Copynumber: 2.2 Consensus size: 60
56497549 CAAAAAAATA
* ** * * * * *
56497559 AAAATTACATTTTAACCCTGTTACTTTTTGAAATTTACATTTTGACCC-CAAACTTTTCT-
1 AAAATTACATTTCAACCCTGAAACTTTCTCAAAATTACACTTTGACCCTCAAAATTTT-TG
*
56497618 AAAATTACATTTCAACCCCT-AAACTTTCTCAAAATTACACTTTGACCCTTAAAATTTTTG
1 AAAATTACATTTCAA-CCCTGAAACTTTCTCAAAATTACACTTTGACCCTCAAAATTTTTG
56497678 AAAATTACATTT
1 AAAATTACATTT
56497690 TGGCCCCCAT
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
59 37 0.62
60 23 0.38
ACGTcount: A:0.35, C:0.21, G:0.04, T:0.40
Consensus pattern (60 bp):
AAAATTACATTTCAACCCTGAAACTTTCTCAAAATTACACTTTGACCCTCAAAATTTTTG
Found at i:56498247 original size:4 final size:4
Alignment explanation
Indices: 56498238--56498296 Score: 56
Period size: 4 Copynumber: 15.5 Consensus size: 4
56498228 TGACCCGAAG
*
56498238 AAGA AAGA AA-A AAGG AAGA AA-A AAGA AAG- AA-A AAGA AAGA AAGGGA
1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AA--GA
56498284 AAGA AA-A AAGA AA
1 AAGA AAGA AAGA AA
56498297 AAAATAAAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
3 13 0.28
4 29 0.63
6 4 0.09
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:56498270 original size:10 final size:11
Alignment explanation
Indices: 56498238--56498300 Score: 78
Period size: 11 Copynumber: 6.0 Consensus size: 11
56498228 TGACCCGAAG
56498238 AAGAAAGAAAA
1 AAGAAAGAAAA
*
56498249 AAGGAAGAAAA
1 AAGAAAGAAAA
56498260 AAGAAAG-AAA
1 AAGAAAGAAAA
56498270 AAGAAAG-AAA
1 AAGAAAGAAAA
**
56498280 GGGAAAGAAAA
1 AAGAAAGAAAA
56498291 AAGAAA-AAAA
1 AAGAAAGAAAA
56498301 TAAAAATTAC
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
10 22 0.49
11 23 0.51
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (11 bp):
AAGAAAGAAAA
Found at i:56499339 original size:35 final size:34
Alignment explanation
Indices: 56499293--56499364 Score: 108
Period size: 35 Copynumber: 2.1 Consensus size: 34
56499283 GTTTCTTTCT
*
56499293 TTTCAAAAATTTTCGTGTTTTCAAAAATTCTCATG
1 TTTCAAAAATTTTCGAGTTTTC-AAAATTCTCATG
* *
56499328 TTTCAAAAATTTTTGAGTTTTCAAAATTTTCATG
1 TTTCAAAAATTTTCGAGTTTTCAAAATTCTCATG
56499362 TTT
1 TTT
56499365 TCGTGTTTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
34 14 0.41
35 20 0.59
ACGTcount: A:0.31, C:0.11, G:0.08, T:0.50
Consensus pattern (34 bp):
TTTCAAAAATTTTCGAGTTTTCAAAATTCTCATG
Found at i:56499391 original size:21 final size:21
Alignment explanation
Indices: 56499365--56499418 Score: 78
Period size: 19 Copynumber: 2.7 Consensus size: 21
56499355 TTTCATGTTT
56499365 TCGTGTTTTCAAAAAAAATTC
1 TCGTGTTTTCAAAAAAAATTC
*
56499386 TCGTGTTTTC--AAAAAATTT
1 TCGTGTTTTCAAAAAAAATTC
56499405 TCGTG-TTTCAAAAA
1 TCGTGTTTTCAAAAA
56499419 TCTTCGTGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 4 0.13
19 13 0.43
20 3 0.10
21 10 0.33
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.41
Consensus pattern (21 bp):
TCGTGTTTTCAAAAAAAATTC
Found at i:56499417 original size:17 final size:18
Alignment explanation
Indices: 56499292--56499438 Score: 127
Period size: 18 Copynumber: 7.7 Consensus size: 18
56499282 TGTTTCTTTC
56499292 TTTTCAAAAATTTTCGTG
1 TTTTCAAAAATTTTCGTG
* *
56499310 TTTTCAAAAATTCTCATG
1 TTTTCAAAAATTTTCGTG
* *
56499328 -TTTCAAAAATTTTTGAG
1 TTTTCAAAAATTTTCGTG
56499345 TTTTCAAAATTTTCATGTTTTCGTG
1 TTTTCAAAA-----A--TTTTCGTG
*
56499370 TTTTCAAAAAAAATTCTCGTG
1 TTTTC---AAAAATTTTCGTG
56499391 TTTTCAAAAAATTTTCGTG
1 TTTTC-AAAAATTTTCGTG
*
56499410 -TTTCAAAAATCTTCGTG
1 TTTTCAAAAATTTTCGTG
56499427 TTTTCAAAAATT
1 TTTTCAAAAATT
56499439 ATTATTGTGT
Statistics
Matches: 105, Mismatches: 12, Indels: 24
0.74 0.09 0.17
Matches are distributed among these distances:
17 25 0.24
18 38 0.36
19 13 0.12
21 12 0.11
23 2 0.02
25 11 0.10
28 4 0.04
ACGTcount: A:0.31, C:0.12, G:0.10, T:0.47
Consensus pattern (18 bp):
TTTTCAAAAATTTTCGTG
Found at i:56506421 original size:19 final size:18
Alignment explanation
Indices: 56506394--56506432 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
56506384 GCATATATAT
*
56506394 ATTTAAAACAGAATAATAA
1 ATTTAAAACAAAATAA-AA
*
56506413 ATTTTAAACAAAATAAAA
1 ATTTAAAACAAAATAAAA
56506431 AT
1 AT
56506433 CAAGTGCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.64, C:0.05, G:0.03, T:0.28
Consensus pattern (18 bp):
ATTTAAAACAAAATAAAA
Found at i:56515945 original size:39 final size:40
Alignment explanation
Indices: 56515838--56515975 Score: 134
Period size: 40 Copynumber: 3.5 Consensus size: 40
56515828 TGCGTTTGGA
* * * *
56515838 TAAAAAATGCCACTAAAAATCAAGCAGTAGCGGCGCTTTT
1 TAAAAAACGCCGCTAAAAATCAAGCATTAGCGGCGATTTT
* * ** * * *
56515878 GAAAAAACGCTGCTAAAGGTCGATCATTAGCAGCGATTTT
1 TAAAAAACGCCGCTAAAAATCAAGCATTAGCGGCGATTTT
*
56515918 TAAAAAACGCCGCTAAAAAT-AAGCATTAGCGGCGTTTTT
1 TAAAAAACGCCGCTAAAAATCAAGCATTAGCGGCGATTTT
* * *
56515957 TGAAAAGCGCCGCAAAAAA
1 TAAAAAACGCCGCTAAAAA
56515976 CTTAAGCCCA
Statistics
Matches: 76, Mismatches: 22, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
39 31 0.41
40 45 0.59
ACGTcount: A:0.40, C:0.19, G:0.20, T:0.22
Consensus pattern (40 bp):
TAAAAAACGCCGCTAAAAATCAAGCATTAGCGGCGATTTT
Found at i:56520316 original size:24 final size:24
Alignment explanation
Indices: 56520289--56520334 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
56520279 CTAAATTCTA
*
56520289 TCTTT-TATTTAATTTATAATTAAT
1 TCTTTATAGTTAATTT-TAATTAAT
56520313 TCTTTATAGTTAATTTTAATTA
1 TCTTTATAGTTAATTTTAATTA
56520335 TTTATGATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (24 bp):
TCTTTATAGTTAATTTTAATTAAT
Found at i:56522595 original size:19 final size:18
Alignment explanation
Indices: 56522547--56522597 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 18
56522537 GTTCTTTGAT
56522547 TTTTTATTTATTTAATTC
1 TTTTTATTTATTTAATTC
*
56522565 --TGTA-TTACTTTAATCTC
1 TTTTTATTTA-TTTAAT-TC
56522582 TTTTTATTTATTTAAT
1 TTTTTATTTATTTAAT
56522598 GCACCACTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 9
0.70 0.05 0.24
Matches are distributed among these distances:
15 3 0.12
16 9 0.35
17 2 0.08
19 9 0.35
20 3 0.12
ACGTcount: A:0.24, C:0.08, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTTTATTTATTTAATTC
Found at i:56526989 original size:22 final size:22
Alignment explanation
Indices: 56526961--56527005 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
56526951 TTTATGATAA
56526961 TAGATTATAGCTGTTCAATTTG
1 TAGATTATAGCTGTTCAATTTG
56526983 TAGATTATAGCTGTTCAATTTG
1 TAGATTATAGCTGTTCAATTTG
56527005 T
1 T
56527006 CTATGTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.09, G:0.18, T:0.47
Consensus pattern (22 bp):
TAGATTATAGCTGTTCAATTTG
Found at i:56533711 original size:12 final size:12
Alignment explanation
Indices: 56533696--56533720 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
56533686 AAATATACAT
56533696 AAATAATAAATA
1 AAATAATAAATA
56533708 AAATAATAAATA
1 AAATAATAAATA
56533720 A
1 A
56533721 GGTTATCGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
AAATAATAAATA
Found at i:56544253 original size:5 final size:5
Alignment explanation
Indices: 56544243--56544271 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
56544233 TGTGTTATTA
56544243 TTTAT TTTAT TTTAT TTTAT TTTAT TTTA
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTA
56544272 CACACACATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTAT
Found at i:56545479 original size:30 final size:31
Alignment explanation
Indices: 56545443--56545504 Score: 92
Period size: 30 Copynumber: 2.0 Consensus size: 31
56545433 ATACAATTTG
*
56545443 ATATATAAACTTTTAATTT-GA-TATGATTAT
1 ATATATAAAATTTTAATTTAGATTAT-ATTAT
56545473 ATATATAAAATTTTAATTTAGATTATATTAT
1 ATATATAAAATTTTAATTTAGATTATATTAT
56545504 A
1 A
56545505 CACATTCAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 18 0.62
31 8 0.28
32 3 0.10
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.50
Consensus pattern (31 bp):
ATATATAAAATTTTAATTTAGATTATATTAT
Found at i:56545807 original size:16 final size:17
Alignment explanation
Indices: 56545786--56545818 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
56545776 AAATTTGAAA
56545786 AAAAT-ATCAATTTTTT
1 AAAATAATCAATTTTTT
*
56545802 AAAATAATTAATTTTTT
1 AAAATAATCAATTTTTT
56545819 TTCAAATACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (17 bp):
AAAATAATCAATTTTTT
Found at i:56552151 original size:15 final size:16
Alignment explanation
Indices: 56552131--56552160 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
56552121 TTGGTAATAT
56552131 AAAAAAT-TTATTTTA
1 AAAAAATCTTATTTTA
56552146 AAAAAATCTTATTTT
1 AAAAAATCTTATTTT
56552161 TTATACTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (16 bp):
AAAAAATCTTATTTTA
Found at i:56552279 original size:15 final size:15
Alignment explanation
Indices: 56552261--56552308 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
56552251 AAAATATATT
56552261 TATTCTAAATTTCAC
1 TATTCTAAATTTCAC
* *
56552276 TATT-TAAATAT-ATT
1 TATTCTAAATTTCA-C
56552290 TATTCTAAATTTCAC
1 TATTCTAAATTTCAC
56552305 TATT
1 TATT
56552309 TTGAAGACCC
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
13 1 0.04
14 10 0.38
15 14 0.54
16 1 0.04
ACGTcount: A:0.35, C:0.12, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTCTAAATTTCAC
Found at i:56552284 original size:29 final size:29
Alignment explanation
Indices: 56552252--56552309 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
56552242 AGGAAAGGAA
56552252 AAATATATTTATTCTAAATTTCACTATTT
1 AAATATATTTATTCTAAATTTCACTATTT
56552281 AAATATATTTATTCTAAATTTCACTATTT
1 AAATATATTTATTCTAAATTTCACTATTT
56552310 TGAAGACCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.52
Consensus pattern (29 bp):
AAATATATTTATTCTAAATTTCACTATTT
Found at i:56552293 original size:14 final size:15
Alignment explanation
Indices: 56552252--56552299 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
56552242 AGGAAAGGAA
56552252 AAATATATTTATTCT
1 AAATATATTTATTCT
* *
56552267 AAATTTCA-CTATT-T
1 AAATAT-ATTTATTCT
56552281 AAATATATTTATTCT
1 AAATATATTTATTCT
56552296 AAAT
1 AAAT
56552300 TTCACTATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
13 1 0.04
14 10 0.38
15 14 0.54
16 1 0.04
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (15 bp):
AAATATATTTATTCT
Found at i:56553033 original size:21 final size:22
Alignment explanation
Indices: 56553007--56553054 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
56552997 AAAAATATTA
56553007 AAAATAATTTATAT-AA-TTTTT
1 AAAATAATTT-TATGAATTTTTT
*
56553028 AAAATAATTTTTTGAATTTTTT
1 AAAATAATTTTATGAATTTTTT
56553050 AAAAT
1 AAAAT
56553055 TAAAATTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 2 0.08
21 12 0.50
22 10 0.42
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (22 bp):
AAAATAATTTTATGAATTTTTT
Found at i:56558656 original size:61 final size:60
Alignment explanation
Indices: 56558531--56558691 Score: 191
Period size: 61 Copynumber: 2.7 Consensus size: 60
56558521 ACATAGTTGG
* * * * * *
56558531 TCACCCAACTTTTAGTGCGCTTTCATTTTGGTCACCCAAAATGAATTCTTTGCAATTTTG
1 TCACCCTACTCTTAGAGCACTTTCATTTTAGTCACCCAAAATGAATTCTTTGCAATTTTC
* *
56558591 TCACCCTAGTCTTATGA-TACTTTCATTTTAGTCACACCAAAATGAAATTC-TTGCAATTTTC
1 TCACCCTACTCTTA-GAGCACTTTCATTTTAGTCAC-CCAAAATG-AATTCTTTGCAATTTTC
* *
56558652 TCACCCTACTCTTAGAGCGCTTTTATTTTAGTCACCCAAA
1 TCACCCTACTCTTAGAGCACTTTCATTTTAGTCACCCAAA
56558692 CGTTAAATCT
Statistics
Matches: 85, Mismatches: 12, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
60 33 0.39
61 47 0.55
62 5 0.06
ACGTcount: A:0.26, C:0.25, G:0.11, T:0.39
Consensus pattern (60 bp):
TCACCCTACTCTTAGAGCACTTTCATTTTAGTCACCCAAAATGAATTCTTTGCAATTTTC
Found at i:56561977 original size:31 final size:29
Alignment explanation
Indices: 56561905--56561978 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
56561895 ACCTTAGGTT
* *
56561905 ACATTTTAGTCACTTATGTTTGAAATGTT
1 ACATTTTAGTCACTTATGTTTCAAATGTA
* **
56561934 ACATTTTTGTCACTTATGTTATCATGTTGTA
1 ACATTTTAGTCACTTATGTT-TCA-AATGTA
56561965 ACATTTTAGTCACT
1 ACATTTTAGTCACT
56561979 AAGCTATTAA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
29 19 0.51
30 2 0.05
31 16 0.43
ACGTcount: A:0.26, C:0.14, G:0.12, T:0.49
Consensus pattern (29 bp):
ACATTTTAGTCACTTATGTTTCAAATGTA
Found at i:56563122 original size:33 final size:33
Alignment explanation
Indices: 56563080--56563145 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
56563070 TTATTTATTG
*
56563080 CTAGGTTGTTAAGTATTGGATATGACAAAAGAA
1 CTAGGTTGTTAAGTATTGGATACGACAAAAGAA
56563113 CTAGGTTGTTAAGTATTGGATACGACAAAAGAA
1 CTAGGTTGTTAAGTATTGGATACGACAAAAGAA
56563146 ATAAATGTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (33 bp):
CTAGGTTGTTAAGTATTGGATACGACAAAAGAA
Found at i:56567684 original size:19 final size:20
Alignment explanation
Indices: 56567644--56567687 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
56567634 GTCTCTTTAG
* *
56567644 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
56567663 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
56567682 GCATTA
1 GCATTA
56567688 GATTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:56570252 original size:8 final size:8
Alignment explanation
Indices: 56570239--56570277 Score: 62
Period size: 8 Copynumber: 5.0 Consensus size: 8
56570229 TTTAGACTAG
56570239 AAAAAAAT
1 AAAAAAAT
56570247 AAAAAAAT
1 AAAAAAAT
*
56570255 -CAAAAAT
1 AAAAAAAT
56570262 AAAAAAAT
1 AAAAAAAT
56570270 AAAAAAAT
1 AAAAAAAT
56570278 CAAAGTCAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.85, C:0.03, G:0.00, T:0.13
Consensus pattern (8 bp):
AAAAAAAT
Found at i:56570261 original size:15 final size:14
Alignment explanation
Indices: 56570241--56570310 Score: 61
Period size: 15 Copynumber: 4.9 Consensus size: 14
56570231 TAGACTAGAA
56570241 AAAAATAAAAAAAT
1 AAAAATAAAAAAAT
56570255 CAAAAATAAAAAAAT
1 -AAAAATAAAAAAAT
* *
56570270 AAAAA-AATCAAAGT
1 AAAAATAA-AAAAAT
* *
56570284 CAAAATAGAAAAAAG
1 AAAAATA-AAAAAAT
*
56570299 AAAAAGAAAAAA
1 AAAAATAAAAAA
56570311 GAGAAGAAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 7
0.75 0.14 0.12
Matches are distributed among these distances:
13 2 0.05
14 18 0.41
15 23 0.52
16 1 0.02
ACGTcount: A:0.80, C:0.04, G:0.06, T:0.10
Consensus pattern (14 bp):
AAAAATAAAAAAAT
Found at i:56570302 original size:6 final size:6
Alignment explanation
Indices: 56570293--56570334 Score: 59
Period size: 6 Copynumber: 7.0 Consensus size: 6
56570283 TCAAAATAGA
*
56570293 AAAAAG AAAAAG AAAAA- AGAGAAG AAAAAG AAAAAG AAAAAG
1 AAAAAG AAAAAG AAAAAG A-AAAAG AAAAAG AAAAAG AAAAAG
56570335 GAGGGGTCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 1 0.03
6 30 0.94
7 1 0.03
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:56570717 original size:13 final size:14
Alignment explanation
Indices: 56570665--56570709 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
56570655 CAAAAAAAGA
*
56570665 AAAAGATGAAGAATG
1 AAAA-ATGAAAAATG
*
56570680 -AAAATGGAAAATG
1 AAAAATGAAAAATG
56570693 AAAAATGAAAAATG
1 AAAAATGAAAAATG
56570707 AAA
1 AAA
56570710 GAGTAAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
13 8 0.31
14 18 0.69
ACGTcount: A:0.67, C:0.00, G:0.20, T:0.13
Consensus pattern (14 bp):
AAAAATGAAAAATG
Found at i:56572222 original size:88 final size:88
Alignment explanation
Indices: 56571962--56572348 Score: 544
Period size: 88 Copynumber: 4.4 Consensus size: 88
56571952 TGAAGATAGC
* * * * * * * *
56571962 AGATCTTGCCTTTCTGCATTAACAGTGAAGCAGATCGAAGACATAAACCTTGCCTCTCTCGGTTG
1 AGATCTTGCCTTCCTGCGTTGACAGCGAAGCAGATCAAAGACACAAACCTTGCATCTGTCGGTTG
56572027 TGATGGAGCTGGTTGAAGACAAA
66 TGATGGAGCTGGTTGAAGACAAA
* * *
56572050 AGATCTTACCTTCCTGCATTGACAGCGAAGCAGATCGAAA-AC-CAAACCTTGCCTCTGTCGGTT
1 AGATCTTGCCTTCCTGCGTTGACAGCGAAGCAGATC-AAAGACACAAACCTTGCATCTGTCGGTT
*
56572113 GTGATGGAGCTGGTTGAAGACAAT
65 GTGATGGAGCTGGTTGAAGACAAA
* *
56572137 AGATCTTGCCTTCCTGGGTTGACAGCGAAGCAGGTCAAAGACACAAACCTTGCATCTGTCGGTTG
1 AGATCTTGCCTTCCTGCGTTGACAGCGAAGCAGATCAAAGACACAAACCTTGCATCTGTCGGTTG
* *
56572202 TGATGGAGCTGTTTGAAGACAAT
66 TGATGGAGCTGGTTGAAGACAAA
* *
56572225 AGATCTTGCCTTCCTGGGTTGACAGCGAAGCAGGTCAAAGACACAAACCTTGCATCTGTCGGTTG
1 AGATCTTGCCTTCCTGCGTTGACAGCGAAGCAGATCAAAGACACAAACCTTGCATCTGTCGGTTG
* *
56572290 TGATGGAGCTGTTTGAAAACAAA
66 TGATGGAGCTGGTTGAAGACAAA
* * *
56572313 AGATCTTGCCTTCCAGCGTTAACAACGAAGCAGATC
1 AGATCTTGCCTTCCTGCGTTGACAGCGAAGCAGATC
56572349 GAAAACAAGC
Statistics
Matches: 275, Mismatches: 21, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
86 3 0.01
87 76 0.28
88 194 0.71
89 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.26
Consensus pattern (88 bp):
AGATCTTGCCTTCCTGCGTTGACAGCGAAGCAGATCAAAGACACAAACCTTGCATCTGTCGGTTG
TGATGGAGCTGGTTGAAGACAAA
Found at i:56572253 original size:175 final size:176
Alignment explanation
Indices: 56571962--56572433 Score: 571
Period size: 175 Copynumber: 2.7 Consensus size: 176
56571952 TGAAGATAGC
* * * * * *
56571962 AGATCTTGCCTTTCTGCATTAACAGTGAAGCAGATCGAAGACATAAACCTTGCCTCTCTCGGTTG
1 AGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCAAAGACACAAACCTTGCATCTCTCGGTTG
56572027 TGATGGAGCTGGTTGAAGACAAAAGATCTTACCTTCCTGCATTGACAGCGAAGCAGATCGAAA-A
66 TGATGGAGCTGGTTGAAGACAAAAGATCTTACCTTCCTGCATTGACAGCGAAGCAGATC-AAAGA
* * *
56572091 C-CAAACCTTGCCTCTGTCGGTTGTGATGGAGCTGGTTGAAGACAAT
130 CACAAACCTTGCATCTGTCGGTTGTGATGGAGCTGGTTGAAAACAAA
* * * *
56572137 AGATCTTGCCTTCCTGGGTTGACAGCGAAGCAGGTCAAAGACACAAACCTTGCATCTGTCGGTTG
1 AGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCAAAGACACAAACCTTGCATCTCTCGGTTG
* * * ** *
56572202 TGATGGAGCTGTTTGAAGACAATAGATCTTGCCTTCCTGGGTTGACAGCGAAGCAGGTCAAAGAC
66 TGATGGAGCTGGTTGAAGACAAAAGATCTTACCTTCCTGCATTGACAGCGAAGCAGATCAAAGAC
*
56572267 ACAAACCTTGCATCTGTCGGTTGTGATGGAGCTGTTTGAAAACAAA
131 ACAAACCTTGCATCTGTCGGTTGTGATGGAGCTGGTTGAAAACAAA
* * * * * *
56572313 AGATCTTGCCTTCCAGCGTTAACAACGAAGCAGATCGAA-A-ACAAGCCTTGCCT-TCATTGGTT
1 AGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCAAAGACACAAACCTTGCATCTC-TCGGTT
* * ** * * *
56572375 G-CAGTGGAGCTGGTTAAAGA-AGTAGATCTTATCTTCCTACATTAACAGCGAAGCAGATC
65 GTGA-TGGAGCTGGTTGAAGACAAAAGATCTTACCTTCCTGCATTGACAGCGAAGCAGATC
56572434 GAAAACAAAG
Statistics
Matches: 252, Mismatches: 41, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
173 33 0.13
174 34 0.13
175 111 0.44
176 74 0.29
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (176 bp):
AGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCAAAGACACAAACCTTGCATCTCTCGGTTG
TGATGGAGCTGGTTGAAGACAAAAGATCTTACCTTCCTGCATTGACAGCGAAGCAGATCAAAGAC
ACAAACCTTGCATCTGTCGGTTGTGATGGAGCTGGTTGAAAACAAA
Found at i:56572289 original size:44 final size:44
Alignment explanation
Indices: 56572153--56572289 Score: 122
Period size: 44 Copynumber: 3.1 Consensus size: 44
56572143 TGCCTTCCTG
56572153 GGTTGACAGCGAAGCAGGTCAAAGACACAAACCTTGCATCTGTC
1 GGTTGACAGCGAAGCAGGTCAAAGACACAAACCTTGCATCTGTC
** * * ** * *
56572197 GGTTGTGATG-G-AGCTGTTTGAAGACA-ATAGATCTTGCCTTCCTG--
1 GGTTGACA-GCGAAGCAGGTCAAAGACACA-A-ACCTTG-CAT-CTGTC
56572241 GGTTGACAGCGAAGCAGGTCAAAGACACAAACCTTGCATCTGTC
1 GGTTGACAGCGAAGCAGGTCAAAGACACAAACCTTGCATCTGTC
56572285 GGTTG
1 GGTTG
56572290 TGATGGAGCT
Statistics
Matches: 67, Mismatches: 16, Indels: 20
0.65 0.16 0.19
Matches are distributed among these distances:
42 4 0.06
43 15 0.22
44 29 0.43
45 15 0.22
46 4 0.06
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (44 bp):
GGTTGACAGCGAAGCAGGTCAAAGACACAAACCTTGCATCTGTC
Found at i:56572321 original size:44 final size:44
Alignment explanation
Indices: 56572185--56572321 Score: 104
Period size: 44 Copynumber: 3.1 Consensus size: 44
56572175 AGACACAAAC
* *
56572185 CTTGCATCTGTCGGTTGTGATGGAGCTGTTTGAAGACAATAGAT
1 CTTGCATCTGTCGGTTGTGATGGAGCTGTTTGAAAACAAAAGAT
* ** * * * * *
56572229 CTTGCCTTCCTG--GGTTGACA-GCGAAGCAG-GTCAAAGACACAA-AC
1 CTTG-CAT-CTGTCGGTTGTGATG-G-AGCTGTTTGAAA-ACAAAAGAT
56572273 CTTGCATCTGTCGGTTGTGATGGAGCTGTTTGAAAACAAAAGAT
1 CTTGCATCTGTCGGTTGTGATGGAGCTGTTTGAAAACAAAAGAT
56572317 CTTGC
1 CTTGC
56572322 CTTCCAGCGT
Statistics
Matches: 65, Mismatches: 18, Indels: 20
0.63 0.17 0.19
Matches are distributed among these distances:
42 3 0.05
43 12 0.18
44 36 0.55
45 11 0.17
46 3 0.05
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (44 bp):
CTTGCATCTGTCGGTTGTGATGGAGCTGTTTGAAAACAAAAGAT
Found at i:56572573 original size:83 final size:84
Alignment explanation
Indices: 56572476--56572711 Score: 296
Period size: 83 Copynumber: 2.8 Consensus size: 84
56572466 GAATAGATTT
** * *
56572476 CAGATCTTGCCTCCCTAAGCAGTAGTGGAGCAGATCACATCCAGTCTTATTTCCCTAAGCAGTAG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCCAATCTTATCTCCCTAAGCAGTAG
* *
56572541 -TGGTGTAGACAAAAGAAA-
66 AT-GAGCAGACAAAAGAAAC
*
56572559 TAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCCAATCTTATCTCCCTAAGCAGTAG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCCAATCTTATCTCCCTAAGCAGTAG
*
56572624 ATGAGCAGACGAAAGAAAC
66 ATGAGCAGACAAAAGAAAC
* * * * *
56572643 CAGATCTTATCTCCCTAAGCTGTAATGGAGCAGATGAAAGAAACCGAATCTTATCTCCCTAAGCA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT--CA-CATCC-AATCTTATCTCCCTAAGCA
56572708 GTAG
62 GTAG
56572712 TGGAGCGGAT
Statistics
Matches: 133, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
83 73 0.55
84 33 0.25
86 1 0.01
87 3 0.02
88 23 0.17
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (84 bp):
CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCCAATCTTATCTCCCTAAGCAGTAG
ATGAGCAGACAAAAGAAAC
Found at i:56572674 original size:44 final size:44
Alignment explanation
Indices: 56572476--56572804 Score: 264
Period size: 44 Copynumber: 7.8 Consensus size: 44
56572466 GAATAGATTT
** * *
56572476 CAGATCTTGCCTCCCTAAGCAGTAGTGGAGCAGATC---A-CATC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAAC
* * * *
56572517 CAG-TCTTATTTCCCTAAGCAGTAGTGGTGTAGACAAAAGAAA-
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAC
* * *
56572559 TAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC---A-CATC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAAC
56572600 CA-ATCTTATCTCCCTAAGCAGTAGAT-GAGCAGACGAAAGAAAC
1 CAGATCTTATCTCCCTAAGCAGTAG-TGGAGCAGACGAAAGAAAC
* * *
56572643 CAGATCTTATCTCCCTAAGCTGTAATGGAGCAGATGAAAGAAAC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAC
** * *
56572687 C-GAATCTTATCTCCCTAAGCAGTAGTGGAGC-G--G-ATCACAT
1 CAG-ATCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAC
* * * * *
56572727 CA-AGTCTTACCTCTCTAAGAAGTAGTAGAGTAGACGAAAGAAAC
1 CAGA-TCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAC
56572771 C-GAATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
1 CAG-ATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
56572805 TCACATCAAA
Statistics
Matches: 226, Mismatches: 39, Indels: 43
0.73 0.13 0.14
Matches are distributed among these distances:
39 3 0.01
40 81 0.36
41 8 0.04
42 4 0.02
43 36 0.16
44 93 0.41
45 1 0.00
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.23
Consensus pattern (44 bp):
CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAC
Found at i:56572716 original size:128 final size:128
Alignment explanation
Indices: 56572520--56572805 Score: 382
Period size: 128 Copynumber: 2.2 Consensus size: 128
56572510 TCACATCCAG
* * * * ** **
56572520 TCTTATTTCCCTAAGCAGTAGTGGTGTAGACAAAAGAAATAG-ATCTTATCTCCCTAAGCAGTAG
1 TCTTATCTCCCTAAGCAGTAATGGAGCAGATGAAAGAAACCGAATCTTATCTCCCTAAGCAGTAG
* *
56572584 TGGAGCAGATCACATCCAA-TCTTATCTCCCTAAGCAGTAG-ATGAGCAGACGAAAGAAACC-AG
66 TGGAGCAGATCACAT-CAAGTCTTACCTCCCTAAGAAGTAGTA-GAGCAGACGAAAGAAACCGA-
56572646 A
128 A
*
56572647 TCTTATCTCCCTAAGCTGTAATGGAGCAGATGAAAGAAACCGAATCTTATCTCCCTAAGCAGTAG
1 TCTTATCTCCCTAAGCAGTAATGGAGCAGATGAAAGAAACCGAATCTTATCTCCCTAAGCAGTAG
* * *
56572712 TGGAGCGGATCACATCAAGTCTTACCTCTCTAAGAAGTAGTAGAGTAGACGAAAGAAACCGAA
66 TGGAGCAGATCACATCAAGTCTTACCTCCCTAAGAAGTAGTAGAGCAGACGAAAGAAACCGAA
*
56572775 TCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
1 TCTTATCTCCCTAAGCAGTAATGGAGCAGAT
56572806 CACATCAAAT
Statistics
Matches: 139, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
127 36 0.26
128 101 0.73
129 2 0.01
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (128 bp):
TCTTATCTCCCTAAGCAGTAATGGAGCAGATGAAAGAAACCGAATCTTATCTCCCTAAGCAGTAG
TGGAGCAGATCACATCAAGTCTTACCTCCCTAAGAAGTAGTAGAGCAGACGAAAGAAACCGAA
Found at i:56572735 original size:84 final size:84
Alignment explanation
Indices: 56572646--56572855 Score: 294
Period size: 84 Copynumber: 2.5 Consensus size: 84
56572636 AAGAAACCAG
* * *
56572646 ATCTTATCTCCCTAAGCTGTAATGGAGCAGATGAAAGAAACCGAATCTTATCTCCCTAAGCAGTA
1 ATCTTATCTCCCTAAGATGTAGTGGAGTAGATGAAAGAAACCGAATCTTATCTCCCTAAGCAGTA
*
56572711 GTGGAGCGGATCACATCAA
66 GTGGAGCAGATCACATCAA
* * * * * *
56572730 GTCTTACCTCTCTAAGAAGTAGTAGAGTAGACGAAAGAAACCGAATCTTATCTCCCTAAGCAGTA
1 ATCTTATCTCCCTAAGATGTAGTGGAGTAGATGAAAGAAACCGAATCTTATCTCCCTAAGCAGTA
56572795 GTGGAGCAGATCACATCAA
66 GTGGAGCAGATCACATCAA
* * *
56572814 ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGAAAC
1 ATCTTATCTCCCT-AAGATGTAGTGGAGTAGATGAAAGAAAC
56572856 TAGCCCAATC
Statistics
Matches: 106, Mismatches: 19, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
84 84 0.79
85 22 0.21
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.24
Consensus pattern (84 bp):
ATCTTATCTCCCTAAGATGTAGTGGAGTAGATGAAAGAAACCGAATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCACATCAA
Found at i:56575807 original size:22 final size:23
Alignment explanation
Indices: 56575755--56575809 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 23
56575745 ATGAGGTTAT
* *
56575755 GCTTAATTAAGTGGTTTAATTAG
1 GCTTAATTAAGTGATTTAATTAA
56575778 GCTT-ATTAA-TGATTT-ATTAAA
1 GCTTAATTAAGTGATTTAATT-AA
56575799 GCTTAATTAAG
1 GCTTAATTAAG
56575810 AAAGTTGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
20 3 0.11
21 10 0.37
22 10 0.37
23 4 0.15
ACGTcount: A:0.35, C:0.05, G:0.16, T:0.44
Consensus pattern (23 bp):
GCTTAATTAAGTGATTTAATTAA
Found at i:56578441 original size:40 final size:40
Alignment explanation
Indices: 56578379--56578473 Score: 145
Period size: 40 Copynumber: 2.3 Consensus size: 40
56578369 CTTTTCTTTC
* *
56578379 TTTCTTTCCTTCCTTCCTTCTCTGTTTCGTTTTGCTCTCTG
1 TTTCTTT-CTTTCTCCCTTCTCTGTTTCGTTTTGCTCTCTG
*
56578420 TTTCTTTCTTTCTCCCTTCTCTGTTTTGTTTTGCTCTCTG
1 TTTCTTTCTTTCTCCCTTCTCTGTTTCGTTTTGCTCTCTG
56578460 TTTCTTTTCTTTCT
1 TTTC-TTTCTTTCT
56578474 TTGTCATATA
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
40 34 0.68
41 16 0.32
ACGTcount: A:0.00, C:0.28, G:0.08, T:0.63
Consensus pattern (40 bp):
TTTCTTTCTTTCTCCCTTCTCTGTTTCGTTTTGCTCTCTG
Found at i:56579797 original size:143 final size:143
Alignment explanation
Indices: 56579552--56579824 Score: 494
Period size: 143 Copynumber: 1.9 Consensus size: 143
56579542 TATCATATAC
*
56579552 TGAAAGTATGCTCTACCGAGCCATATCTACTGATCCTACGAAAAGTTGCTCAATCACGCAAATCC
1 TGAAAGTATGCTCTACCGAGCCATATCTACTGATCCTACGAAAAGTTGCTCAATCAAGCAAATCC
* *
56579617 TACTGTTTTACTAAGTGAAACTCAAACGAGGAGAAATCTAAAGATATA-CTGATGAAAACTCAAA
66 TACTGTTATACTAAGTGAAACTCAAACGAGGAGAAATCTAAAGATATATC-GACGAAAACTCAAA
56579681 TTTGTATTATAAAT
130 TTTGTATTATAAAT
56579695 TGAAAGTATGCTCTACCGAGCCATATCTACTGATCCTACGAAAAGTTGCTCAATCAAGCAAATCC
1 TGAAAGTATGCTCTACCGAGCCATATCTACTGATCCTACGAAAAGTTGCTCAATCAAGCAAATCC
*
56579760 TACTGTTATACTCAGTGAAACTCAAACGAGGAGAAATCTAAAGATATATCGACGAAAACTCAAAT
66 TACTGTTATACTAAGTGAAACTCAAACGAGGAGAAATCTAAAGATATATCGACGAAAACTCAAAT
56579825 CGAGTAATGT
Statistics
Matches: 125, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
143 124 0.99
144 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (143 bp):
TGAAAGTATGCTCTACCGAGCCATATCTACTGATCCTACGAAAAGTTGCTCAATCAAGCAAATCC
TACTGTTATACTAAGTGAAACTCAAACGAGGAGAAATCTAAAGATATATCGACGAAAACTCAAAT
TTGTATTATAAAT
Found at i:56581120 original size:16 final size:16
Alignment explanation
Indices: 56581099--56581144 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
56581089 TTTTTCCCCA
56581099 AAGGGTTTAAGGTTTT
1 AAGGGTTTAAGGTTTT
**
56581115 AAGGGTTTAAATTTTT
1 AAGGGTTTAAGGTTTT
* *
56581131 TAGAGTTTAAGGTT
1 AAGGGTTTAAGGTT
56581145 GAAAATTTGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.46
Consensus pattern (16 bp):
AAGGGTTTAAGGTTTT
Found at i:56584890 original size:17 final size:17
Alignment explanation
Indices: 56584868--56584900 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
56584858 ATCTGTGATC
*
56584868 GCATAACTACCGTCAAT
1 GCATAACTACCATCAAT
56584885 GCATAACTACCATCAA
1 GCATAACTACCATCAA
56584901 CTGGGATCCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.30, G:0.09, T:0.21
Consensus pattern (17 bp):
GCATAACTACCATCAAT
Found at i:56584989 original size:49 final size:49
Alignment explanation
Indices: 56584886--56584991 Score: 122
Period size: 49 Copynumber: 2.2 Consensus size: 49
56584876 ACCGTCAATG
* * * * * *
56584886 CATAACTACCATCAACTGGGATCCGAAGTTATACTTCAACCCGTGACTG
1 CATAACCACCATCAACTAGGACCCCAACTTATACTTCAACCCGTGACTA
* **
56584935 CATAACCACCATCAACTAGGACCCCTACTTATACTTCAACTTGTGACTA
1 CATAACCACCATCAACTAGGACCCCAACTTATACTTCAACCCGTGACTA
*
56584984 TATAACCA
1 CATAACCA
56584992 TGTGAAATGG
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.33, C:0.30, G:0.11, T:0.25
Consensus pattern (49 bp):
CATAACCACCATCAACTAGGACCCCAACTTATACTTCAACCCGTGACTA
Found at i:56586525 original size:63 final size:63
Alignment explanation
Indices: 56586449--56586575 Score: 175
Period size: 63 Copynumber: 2.0 Consensus size: 63
56586439 AAAAAATACC
* * *
56586449 TGCAGAAGGTGTTGATGTAGGGTAC-GATGGTGCATAGTGTGGTACATATGTAAAAATAAAAGG
1 TGCAGAAGATGTTGATGCAAGGTACAG-TGGTGCATAGTGTGGTACATATGTAAAAATAAAAGG
* * * *
56586512 TGCAGAAGATGTTGATGCAAGTTACAGTGGTGCATTGTGTGGTGCTTATGTAAAAATAAAAGG
1 TGCAGAAGATGTTGATGCAAGGTACAGTGGTGCATAGTGTGGTACATATGTAAAAATAAAAGG
56586575 T
1 T
56586576 ACAAAAGGTT
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
63 55 0.98
64 1 0.02
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.29
Consensus pattern (63 bp):
TGCAGAAGATGTTGATGCAAGGTACAGTGGTGCATAGTGTGGTACATATGTAAAAATAAAAGG
Found at i:56587649 original size:11 final size:11
Alignment explanation
Indices: 56587633--56587726 Score: 78
Period size: 11 Copynumber: 8.9 Consensus size: 11
56587623 TTTTTTTTAA
*
56587633 TTTTAAAATAC
1 TTTTAAAATAT
56587644 TTTTAAAATATTT
1 TTTTAAAATA--T
56587657 TTTTAAAATAT
1 TTTTAAAATAT
56587668 TTTT-AAAT-T
1 TTTTAAAATAT
*
56587677 TTTT----TAA
1 TTTTAAAATAT
56587684 TTTTAAAATAT
1 TTTTAAAATAT
56587695 TTTTAAAATAAAT
1 TTTTAAAAT--AT
56587708 TTTT-AAA-AT
1 TTTTAAAATAT
56587717 TTTTAAAATA
1 TTTTAAAATA
56587727 AATTTTTGGT
Statistics
Matches: 69, Mismatches: 3, Indels: 22
0.73 0.03 0.23
Matches are distributed among these distances:
6 1 0.01
7 4 0.06
9 11 0.16
10 7 0.10
11 27 0.39
12 3 0.04
13 16 0.23
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.55
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:56587662 original size:13 final size:13
Alignment explanation
Indices: 56587644--56587671 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
56587634 TTTAAAATAC
56587644 TTTTAAAATATTT
1 TTTTAAAATATTT
56587657 TTTTAAAATATTT
1 TTTTAAAATATTT
56587670 TT
1 TT
56587672 AAATTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TTTTAAAATATTT
Found at i:56587688 original size:40 final size:39
Alignment explanation
Indices: 56587644--56587720 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 39
56587634 TTTAAAATAC
*
56587644 TTTTAAAATATTTTTTTAAAAT-ATTTTTAAATTTTTTTAA
1 TTTTAAAATA--TTTTTAAAATAATTTTTAAAATTTTTTAA
56587684 TTTTAAAATATTTTTAAAATAAATTTTTAAAATTTTT
1 TTTTAAAATATTTTTAAAAT-AATTTTTAAAATTTTT
56587721 AAAATAAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 10 0.29
40 24 0.71
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (39 bp):
TTTTAAAATATTTTTAAAATAATTTTTAAAATTTTTTAA
Found at i:56587688 original size:51 final size:50
Alignment explanation
Indices: 56587624--56587725 Score: 159
Period size: 51 Copynumber: 2.0 Consensus size: 50
56587614 TAATAAATAT
** *
56587624 TTTTTTTAATTTTAAAATACTTTTAAAATATTTTTTTAAAATATTTTTAAA
1 TTTTTTTAATTTTAAAATACTTTTAAAATAAATTTTTAAAAT-TTTTAAAA
*
56587675 TTTTTTTAATTTTAAAATATTTTTAAAATAAATTTTTAAAATTTTTAAAA
1 TTTTTTTAATTTTAAAATACTTTTAAAATAAATTTTTAAAATTTTTAAAA
56587725 T
1 T
56587726 AAATTTTTGG
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
50 8 0.17
51 39 0.83
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (50 bp):
TTTTTTTAATTTTAAAATACTTTTAAAATAAATTTTTAAAATTTTTAAAA
Found at i:56587692 original size:17 final size:17
Alignment explanation
Indices: 56587666--56587700 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
56587656 TTTTTAAAAT
* *
56587666 ATTTTTAAATTTTTTTA
1 ATTTTAAAATATTTTTA
56587683 ATTTTAAAATATTTTTA
1 ATTTTAAAATATTTTTA
56587700 A
1 A
56587701 AATAAATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
ATTTTAAAATATTTTTA
Found at i:56587711 original size:13 final size:13
Alignment explanation
Indices: 56587684--56587733 Score: 58
Period size: 13 Copynumber: 4.3 Consensus size: 13
56587674 ATTTTTTTAA
56587684 TTTTAAAAT--AT
1 TTTTAAAATAAAT
56587695 TTTTAAAATAAAT
1 TTTTAAAATAAAT
56587708 TTTT---A-AAAT
1 TTTTAAAATAAAT
56587717 TTTTAAAATAAAT
1 TTTTAAAATAAAT
56587730 TTTT
1 TTTT
56587734 GGTATTTATT
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
9 8 0.24
10 1 0.03
11 9 0.27
12 1 0.03
13 14 0.42
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TTTTAAAATAAAT
Found at i:56587718 original size:9 final size:9
Alignment explanation
Indices: 56587656--56587725 Score: 51
Period size: 9 Copynumber: 8.1 Consensus size: 9
56587646 TTAAAATATT
56587656 TTTTTAAAA
1 TTTTTAAAA
*
56587665 TATTTTTAAA
1 T-TTTTAAAA
**
56587675 TTTTTTTAA
1 TTTTTAAAA
*
56587684 TTTTAAAATA
1 TTTTTAAA-A
56587694 TTTTTAAAA
1 TTTTTAAAA
56587703 ----T-AAA
1 TTTTTAAAA
56587707 TTTTTAAAA
1 TTTTTAAAA
56587716 TTTTTAAAA
1 TTTTTAAAA
56587725 T
1 T
56587726 AAATTTTTGG
Statistics
Matches: 48, Mismatches: 6, Indels: 14
0.71 0.09 0.21
Matches are distributed among these distances:
4 3 0.06
5 1 0.02
8 1 0.02
9 27 0.56
10 16 0.33
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (9 bp):
TTTTTAAAA
Found at i:56587720 original size:22 final size:23
Alignment explanation
Indices: 56587682--56587733 Score: 88
Period size: 22 Copynumber: 2.3 Consensus size: 23
56587672 AAATTTTTTT
*
56587682 AATTTTAAAATATTTTTAAAATA
1 AATTTTTAAATATTTTTAAAATA
56587705 AATTTTTAAA-ATTTTTAAAATA
1 AATTTTTAAATATTTTTAAAATA
56587727 AATTTTT
1 AATTTTT
56587734 GGTATTTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
22 19 0.68
23 9 0.32
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
AATTTTTAAATATTTTTAAAATA
Found at i:56591189 original size:22 final size:20
Alignment explanation
Indices: 56591161--56591239 Score: 79
Period size: 22 Copynumber: 3.7 Consensus size: 20
56591151 CTAAAAAATA
*
56591161 AAAAATTACCAAAATTATTTTT
1 AAAAATTA--AAAAATATTTTT
56591183 AAAAATTAAAAAATATTTTT
1 AAAAATTAAAAAATATTTTT
56591203 AAAAAAATATAAAAAAATATTTTT
1 --AAAAAT-T-AAAAAATATTTTT
*
56591227 -AAAATTCAAAAAT
1 AAAAATTAAAAAAT
56591240 TTAATTAAAT
Statistics
Matches: 51, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
19 6 0.12
20 12 0.24
21 5 0.10
22 14 0.27
23 1 0.02
24 13 0.25
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (20 bp):
AAAAATTAAAAAATATTTTT
Found at i:56591364 original size:15 final size:15
Alignment explanation
Indices: 56591344--56591380 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
56591334 GTGATTTGAC
56591344 AAAAAAT-ACAAATTA
1 AAAAAATAACAAA-TA
56591359 AAAAAATAACAAATA
1 AAAAAATAACAAATA
56591374 AAAAAAT
1 AAAAAAT
56591381 TAAATGAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 16 0.76
16 5 0.24
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.16
Consensus pattern (15 bp):
AAAAAATAACAAATA
Found at i:56592058 original size:43 final size:44
Alignment explanation
Indices: 56592001--56592089 Score: 144
Period size: 43 Copynumber: 2.0 Consensus size: 44
56591991 GTTGATATAA
* *
56592001 AATAGAAGTTGTGATAATTAAACATTT-AAAATAATTATAATTT
1 AATAGAAGTAGTGATAATTAAACATTTAAAAATAATTAGAATTT
*
56592044 AATAGAAGTAGTGATAATTACACATTTAAAAATAATTAGAATTT
1 AATAGAAGTAGTGATAATTAAACATTTAAAAATAATTAGAATTT
56592088 AA
1 AA
56592090 GTTACAATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
43 25 0.60
44 17 0.40
ACGTcount: A:0.51, C:0.03, G:0.10, T:0.36
Consensus pattern (44 bp):
AATAGAAGTAGTGATAATTAAACATTTAAAAATAATTAGAATTT
Found at i:56592978 original size:22 final size:22
Alignment explanation
Indices: 56592953--56593003 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
56592943 CGGTGTCCAA
*
56592953 TGTAAGGGTGCTGAAGTCTATT
1 TGTAAGGGTGCTGAAGCCTATT
56592975 TGTAAGGGTGCTGAAGCCTATT
1 TGTAAGGGTGCTGAAGCCTATT
56592997 TGTAAGG
1 TGTAAGG
56593004 ATCAATGCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.24, C:0.10, G:0.33, T:0.33
Consensus pattern (22 bp):
TGTAAGGGTGCTGAAGCCTATT
Found at i:56593645 original size:25 final size:26
Alignment explanation
Indices: 56593617--56593672 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
56593607 CACTAAACGG
*
56593617 AGAGCAC-TATCGTGCTAATAATCAA
1 AGAGCACGTAACGTGCTAATAATCAA
*
56593642 AGAGCACGTAACGTGCTAATAATCAG
1 AGAGCACGTAACGTGCTAATAATCAA
56593668 AGAGC
1 AGAGC
56593673 GCACTGAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
25 7 0.25
26 21 0.75
ACGTcount: A:0.39, C:0.20, G:0.21, T:0.20
Consensus pattern (26 bp):
AGAGCACGTAACGTGCTAATAATCAA
Found at i:56594367 original size:2 final size:2
Alignment explanation
Indices: 56594360--56594384 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
56594350 TCTCAATGAC
56594360 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
56594385 ATTCTCTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:56597507 original size:25 final size:25
Alignment explanation
Indices: 56597473--56597524 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
56597463 TTATAAATAT
*
56597473 GGAAAGAATATGGGAAATGAGTTAA
1 GGAAAGAATACGGGAAATGAGTTAA
56597498 GGAAAGAATACGGGAAATGAGTTAA
1 GGAAAGAATACGGGAAATGAGTTAA
56597523 GG
1 GG
56597525 CCCCTGTGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.46, C:0.02, G:0.35, T:0.17
Consensus pattern (25 bp):
GGAAAGAATACGGGAAATGAGTTAA
Found at i:56598260 original size:15 final size:16
Alignment explanation
Indices: 56598240--56598270 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
56598230 GTGGCTTGTG
56598240 TTGGTATAAG-CATAT
1 TTGGTATAAGCCATAT
56598255 TTGGTATAAGCCATAT
1 TTGGTATAAGCCATAT
56598271 GCTTCAACCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (16 bp):
TTGGTATAAGCCATAT
Found at i:56599775 original size:30 final size:31
Alignment explanation
Indices: 56599724--56599783 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
56599714 TGTTATACGA
**
56599724 AAATTTTGATTTTGTGTAATTTT-ATAAATG
1 AAATTTTGATTTCATGTAATTTTCATAAATG
56599754 AAATTTTGATTTCAT-TCAATTTTCATAAAT
1 AAATTTTGATTTCATGT-AATTTTCATAAAT
56599784 CATTAGCAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 1 0.04
30 19 0.73
31 6 0.23
ACGTcount: A:0.35, C:0.05, G:0.08, T:0.52
Consensus pattern (31 bp):
AAATTTTGATTTCATGTAATTTTCATAAATG
Found at i:56614829 original size:107 final size:106
Alignment explanation
Indices: 56614649--56614862 Score: 331
Period size: 107 Copynumber: 2.0 Consensus size: 106
56614639 CCAAAACCCA
* * * * * *
56614649 TACTTTGAAACTTTAAGAGGGTATTTGGCTATTTGGCTAAACGACAAATCGAAACTCAGCACATT
1 TACTTGGAAACTTTAAAAGGATATTTGGCTATTTGGCGAAACAACAAATCGAAACCCAGCACATT
56614714 AGGGCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCT
66 AGGGCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCT
* *
56614755 TACTTGGAAATTTTAAAAGGATATTTGGCTATTTGGTCG-AACAAAGAAATCGAAACCCAGCACA
1 TACTTGGAAACTTTAAAAGGATATTTGGCTATTTGG-CGAAAC-AACAAATCGAAACCCAGCACA
56614819 TTAGGGCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCT
64 TTAGGGCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCT
56614862 T
1 T
56614863 TATTATTTTT
Statistics
Matches: 98, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
106 35 0.36
107 63 0.64
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (106 bp):
TACTTGGAAACTTTAAAAGGATATTTGGCTATTTGGCGAAACAACAAATCGAAACCCAGCACATT
AGGGCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCT
Found at i:56616237 original size:3 final size:3
Alignment explanation
Indices: 56616229--56616268 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
56616219 TATCTTAGTA
*
56616229 TAT TAT TAT AAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
56616269 TTAATTACTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:56616400 original size:39 final size:40
Alignment explanation
Indices: 56616336--56616415 Score: 110
Period size: 39 Copynumber: 2.0 Consensus size: 40
56616326 CTATTAGTAA
56616336 TATTATTATTATCCTTATTTCATTTATGTTTTCTTTCATTTT
1 TATTATTATTAT-CTTATTTCATTTATGTTTTCTTTC-TTTT
* *
56616378 TATTTTTATTAT-TTATTT-ATTTATTTTTTCTTTCTTTT
1 TATTATTATTATCTTATTTCATTTATGTTTTCTTTCTTTT
56616416 CTAAAAGATT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
38 4 0.11
39 15 0.42
40 6 0.17
42 11 0.31
ACGTcount: A:0.17, C:0.09, G:0.01, T:0.72
Consensus pattern (40 bp):
TATTATTATTATCTTATTTCATTTATGTTTTCTTTCTTTT
Found at i:56617273 original size:109 final size:108
Alignment explanation
Indices: 56617076--56617365 Score: 442
Period size: 109 Copynumber: 2.7 Consensus size: 108
56617066 TATTTAGCTT
*
56617076 TTTGGAAATTCGAGAAAATGTGCCCTAATGTGCTGGGTTTCGATTATTTTCTCGTTCAACCAAAT
1 TTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGA-T-TTTTCTCGTTCAACCAAAT
* **
56617141 AGCTAAATATCCTTTTAAAAATTTCAAAATAAGACAATGTTTTGCG
64 AGCCAAATATCCTTCCAAAAATTTC-AAATAAGACAATGTTTTGCG
*
56617187 TTTGGAAATTCGAGAAAACGTGTCCTAATGTGCTGGGTTTCGATTTTTCTCGTTCAACCAAATAG
1 TTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCTCGTTCAACCAAATAG
*
56617252 CCAAATATCCTTCCAAAAATTTCAAATAAGGCAATGTTTTGCG
66 CCAAATATCCTTCCAAAAATTTCAAATAAGACAATGTTTTGCG
* * * *
56617295 TTTGGAAATTCAAG-GAACGTGCCCTAATGTGCTGGGTTTCGA--TTTCTCATTTAACCAAATAG
1 TTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCTCGTTCAACCAAATAG
56617357 CCAAATATC
66 CCAAATATC
56617366 TTCTTGAATT
Statistics
Matches: 168, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
105 27 0.16
107 26 0.15
108 32 0.19
109 41 0.24
110 1 0.01
111 41 0.24
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (108 bp):
TTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCTCGTTCAACCAAATAG
CCAAATATCCTTCCAAAAATTTCAAATAAGACAATGTTTTGCG
Found at i:56618346 original size:26 final size:27
Alignment explanation
Indices: 56618317--56618382 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 27
56618307 AAATATGACA
*
56618317 AAAACATATGTATATATATAAATTAT-
1 AAAATATATGTATATATATAAATTATC
* * *
56618343 AAAATATAAGTACATATATATATTATC
1 AAAATATATGTATATATATAAATTATC
*
56618370 AAAATGTATGTAT
1 AAAATATATGTAT
56618383 GTATGTATAC
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
26 22 0.69
27 10 0.31
ACGTcount: A:0.52, C:0.05, G:0.06, T:0.38
Consensus pattern (27 bp):
AAAATATATGTATATATATAAATTATC
Found at i:56618878 original size:30 final size:29
Alignment explanation
Indices: 56618745--56618912 Score: 165
Period size: 30 Copynumber: 5.7 Consensus size: 29
56618735 TAAAAAGTTC
* *
56618745 ATTTTGACCCCTAAAATTTTTGAAATTAT
1 ATTTTGACCCCTAAACTTTTTAAAATTAT
* * * *
56618774 CTTTTAACCCCTAAAATTTTTCAAAATTAC
1 ATTTTGACCCCTAAACTTTTT-AAAATTAT
* * *
56618804 ATTTTTACCCCTAAACTTTTTGAAATTAC
1 ATTTTGACCCCTAAACTTTTTAAAATTAT
56618833 ATTTTGACCCCTAAACTTTCTTAAAATTAT
1 ATTTTGACCCCTAAACTTT-TTAAAATTAT
* * * *
56618863 GTTTTAACCCCTAAACTTTCTACACATTAT
1 ATTTTGACCCCTAAACTTTTTA-AAATTAT
* * *
56618893 GTTTTGGCCCCAAAACTTTT
1 ATTTTGACCCCTAAACTTTT
56618913 CCTACATTTG
Statistics
Matches: 117, Mismatches: 19, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
29 46 0.39
30 71 0.61
ACGTcount: A:0.32, C:0.21, G:0.05, T:0.42
Consensus pattern (29 bp):
ATTTTGACCCCTAAACTTTTTAAAATTAT
Found at i:56618878 original size:59 final size:59
Alignment explanation
Indices: 56618744--56618881 Score: 181
Period size: 59 Copynumber: 2.3 Consensus size: 59
56618734 ATAAAAAGTT
* *
56618744 CATTTTGACCCCTAAAATTTTTGAAATTATCTTTTAACCCCTAAAATTTTTCAAAATTA
1 CATTTTAACCCCTAAACTTTTTGAAATTATCTTTTAACCCCTAAAATTTTTCAAAATTA
* * *
56618803 CATTTTTACCCCTAAACTTTTTGAAATTA-CATTTTGACCCCTAAACTTTCTT-AAAATTA
1 CATTTTAACCCCTAAACTTTTTGAAATTATC-TTTTAACCCCTAAAATTT-TTCAAAATTA
**
56618862 TGTTTTAACCCCTAAACTTT
1 CATTTTAACCCCTAAACTTT
56618882 CTACACATTA
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
58 1 0.01
59 67 0.96
60 2 0.03
ACGTcount: A:0.33, C:0.21, G:0.04, T:0.43
Consensus pattern (59 bp):
CATTTTAACCCCTAAACTTTTTGAAATTATCTTTTAACCCCTAAAATTTTTCAAAATTA
Found at i:56619266 original size:23 final size:22
Alignment explanation
Indices: 56619239--56619285 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
56619229 TTTGAAGAAG
*
56619239 AAGAAGAAGAAAGAAAAAGAAAA
1 AAGAAAAAGAAA-AAAAAGAAAA
*
56619262 AAGAAAAAGAAAAAAAATAAAA
1 AAGAAAAAGAAAAAAAAGAAAA
56619284 AA
1 AA
56619286 TAATATAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (22 bp):
AAGAAAAAGAAAAAAAAGAAAA
Found at i:56619273 original size:6 final size:6
Alignment explanation
Indices: 56619236--56619275 Score: 53
Period size: 6 Copynumber: 6.3 Consensus size: 6
56619226 GGTTTTGAAG
*
56619236 AAGAAG AAGAAGA AAGAAA AAGAAAA AAGAAA AAGAAA AA
1 AAGAAA AAGAA-A AAGAAA AAG-AAA AAGAAA AAGAAA AA
56619276 AAATAAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
6 20 0.65
7 11 0.35
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (6 bp):
AAGAAA
Found at i:56619273 original size:13 final size:13
Alignment explanation
Indices: 56619236--56619276 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
56619226 GGTTTTGAAG
* *
56619236 AAGAAGAAGAAGA
1 AAGAAAAAGAAAA
56619249 AAGAAAAAGAAAA
1 AAGAAAAAGAAAA
56619262 AAGAAAAAGAAAA
1 AAGAAAAAGAAAA
56619275 AA
1 AA
56619277 AATAAAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (13 bp):
AAGAAAAAGAAAA
Found at i:56619521 original size:7 final size:7
Alignment explanation
Indices: 56619509--56619560 Score: 61
Period size: 7 Copynumber: 7.4 Consensus size: 7
56619499 CCAGAAAAAG
56619509 AAAAGAA
1 AAAAGAA
56619516 AAAAG-A
1 AAAAGAA
* *
56619522 AGAGGAA
1 AAAAGAA
56619529 AAAAGAGA
1 AAAAGA-A
*
56619537 AAAAAAA
1 AAAAGAA
56619544 AAAAGAA
1 AAAAGAA
56619551 AAAAGAA
1 AAAAGAA
56619558 AAA
1 AAA
56619561 GGGGCCCAAG
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
6 4 0.11
7 27 0.73
8 6 0.16
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (7 bp):
AAAAGAA
Found at i:56619529 original size:13 final size:12
Alignment explanation
Indices: 56619503--56619559 Score: 73
Period size: 12 Copynumber: 4.8 Consensus size: 12
56619493 AGCAGGCCAG
56619503 AAAAAGAAAAGA
1 AAAAAGAAAAGA
*
56619515 AAAAAGAAGAGGA
1 AAAAAGAA-AAGA
*
56619528 AAAAAGAGAA-A
1 AAAAAGAAAAGA
56619539 AAAAA-AAAAGA
1 AAAAAGAAAAGA
56619550 AAAAAGAAAA
1 AAAAAGAAAA
56619560 AGGGGCCCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
10 3 0.08
11 12 0.32
12 13 0.34
13 10 0.26
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (12 bp):
AAAAAGAAAAGA
Found at i:56619532 original size:15 final size:13
Alignment explanation
Indices: 56619503--56619561 Score: 57
Period size: 13 Copynumber: 4.5 Consensus size: 13
56619493 AGCAGGCCAG
56619503 AAAAAGAAAAGAAA
1 AAAAAGAAAA-AAA
**
56619517 AAAGAAG-AGGAAA
1 AAA-AAGAAAAAAA
*
56619530 AAAGAGAAAAAAA
1 AAAAAGAAAAAAA
*
56619543 AAAAAGAAAAAAG
1 AAAAAGAAAAAAA
56619556 AAAAAG
1 AAAAAG
56619562 GGGCCCAAGT
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
12 2 0.06
13 27 0.75
14 4 0.11
15 3 0.08
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAAAAA
Found at i:56619540 original size:22 final size:22
Alignment explanation
Indices: 56619503--56619560 Score: 66
Period size: 25 Copynumber: 2.5 Consensus size: 22
56619493 AGCAGGCCAG
56619503 AAAAAGA-AAAGAAAAAAGAAGAGGA
1 AAAAAGAGAAA-AAAAAA-AA-A-GA
56619528 AAAAAGAGAAAAAAAAAAAAGA
1 AAAAAGAGAAAAAAAAAAAAGA
56619550 AAAAAGA-AAAA
1 AAAAAGAGAAAA
56619561 GGGGCCCAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
21 4 0.12
22 9 0.28
23 1 0.03
24 2 0.06
25 13 0.41
26 3 0.09
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (22 bp):
AAAAAGAGAAAAAAAAAAAAGA
Found at i:56620995 original size:18 final size:19
Alignment explanation
Indices: 56620962--56620997 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
56620952 TAGAAAATAT
*
56620962 ATAATGATAACTATAATGC
1 ATAATGATAACAATAATGC
56620981 ATAAT-ATAACAATAATG
1 ATAATGATAACAATAATG
56620998 TTTTTTTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.53, C:0.08, G:0.08, T:0.31
Consensus pattern (19 bp):
ATAATGATAACAATAATGC
Found at i:56622019 original size:21 final size:21
Alignment explanation
Indices: 56621995--56622049 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 21
56621985 GTGGGTCTGT
* *
56621995 TTATTGGTTTGGGCCCGGGCA
1 TTATTGGCTTGAGCCCGGGCA
56622016 TTATTGGGCTTGAGCCCGGGCA
1 TTATT-GGCTTGAGCCCGGGCA
56622038 TTATTGGGCTTG
1 TTATT-GGCTTG
56622050 TACATCGTCG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 5 0.16
22 26 0.84
ACGTcount: A:0.11, C:0.18, G:0.36, T:0.35
Consensus pattern (21 bp):
TTATTGGCTTGAGCCCGGGCA
Found at i:56622035 original size:22 final size:22
Alignment explanation
Indices: 56622007--56622049 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
56621997 ATTGGTTTGG
56622007 GCCCGGGCATTATTGGGCTTGA
1 GCCCGGGCATTATTGGGCTTGA
56622029 GCCCGGGCATTATTGGGCTTG
1 GCCCGGGCATTATTGGGCTTG
56622050 TACATCGTCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.12, C:0.23, G:0.37, T:0.28
Consensus pattern (22 bp):
GCCCGGGCATTATTGGGCTTGA
Found at i:56622153 original size:17 final size:18
Alignment explanation
Indices: 56622119--56622159 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
56622109 ACGCCCTTTT
56622119 AAAAATTGTAAATATTCAA
1 AAAAATTGT-AATATTCAA
*
56622138 AAAAATTGT-ATTTTCAA
1 AAAAATTGTAATATTCAA
56622155 AAAAA
1 AAAAA
56622160 AATCCTCGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 12 0.57
19 9 0.43
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.32
Consensus pattern (18 bp):
AAAAATTGTAATATTCAA
Found at i:56622342 original size:18 final size:18
Alignment explanation
Indices: 56622319--56622387 Score: 70
Period size: 18 Copynumber: 3.9 Consensus size: 18
56622309 ATAAAATCAG
*
56622319 AAAATTTTTCGTGTTTTC
1 AAAAATTTTCGTGTTTTC
**
56622337 -AAAATTCCCGTG-TTTC
1 AAAAATTTTCGTGTTTTC
* *
56622353 AAAAAGTTTCATGTTTTC
1 AAAAATTTTCGTGTTTTC
*
56622371 AAAAATTATCGTGTTTT
1 AAAAATTTTCGTGTTTT
56622388 AATCGGATCA
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
16 4 0.10
17 17 0.44
18 18 0.46
ACGTcount: A:0.29, C:0.13, G:0.12, T:0.46
Consensus pattern (18 bp):
AAAAATTTTCGTGTTTTC
Found at i:56623502 original size:12 final size:13
Alignment explanation
Indices: 56623484--56623522 Score: 62
Period size: 12 Copynumber: 3.0 Consensus size: 13
56623474 AGGAAAATTT
56623484 TAATAATAATATA
1 TAATAATAATATA
56623497 -AATAATAATATA
1 TAATAATAATATA
56623509 TACATAATAATATA
1 TA-ATAATAATATA
56623523 CAAAAGTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.50
13 1 0.04
14 11 0.46
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (13 bp):
TAATAATAATATA
Found at i:56623515 original size:14 final size:14
Alignment explanation
Indices: 56623484--56623522 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
56623474 AGGAAAATTT
56623484 TAATAATAATATAAA
1 TAATAAT-ATATAAA
*
56623499 TAATAATATATACA
1 TAATAATATATAAA
56623513 TAATAATATA
1 TAATAATATA
56623523 CAAAAGTTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 16 0.70
15 7 0.30
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (14 bp):
TAATAATATATAAA
Found at i:56623712 original size:18 final size:18
Alignment explanation
Indices: 56623689--56623725 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
56623679 AAATATGTAG
56623689 ATAAATATATAA-ACTAAT
1 ATAAATA-ATAATACTAAT
56623707 ATAAATAATAATACTAAT
1 ATAAATAATAATACTAAT
56623725 A
1 A
56623726 ATAATGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (18 bp):
ATAAATAATAATACTAAT
Found at i:56626020 original size:15 final size:15
Alignment explanation
Indices: 56625969--56626021 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 15
56625959 TAAAATATAT
56625969 ATTTATATTATTTTTA
1 ATTTATA-TATTTTTA
*
56625985 ATTTA-ATATTTAATA
1 ATTTATATATTT-TTA
*
56626000 ATTTTATATATTTTTT
1 A-TTTATATATTTTTA
56626016 ATTTAT
1 ATTTAT
56626022 TAAAATTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
14 5 0.16
15 9 0.29
16 11 0.35
17 6 0.19
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
ATTTATATATTTTTA
Found at i:56627434 original size:3 final size:3
Alignment explanation
Indices: 56627418--56627473 Score: 51
Period size: 3 Copynumber: 18.0 Consensus size: 3
56627408 TTAGTAATTC
* *
56627418 TAT TATT TAGT TAT TAT TAT TAT TAT TA- TATT TAT TAA TAT TAT TGT
1 TAT TA-T TA-T TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT
*
56627465 TAT TTT TAT
1 TAT TAT TAT
56627474 GTTTTTATAT
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
2 2 0.05
3 33 0.77
4 8 0.19
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:56632547 original size:15 final size:15
Alignment explanation
Indices: 56632519--56632563 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
56632509 AAAAATACAA
56632519 AAAAAAGAGAAAGAAAG
1 AAAAAA-AG-AAGAAAG
56632536 AAAAAAAGAAGAAAG
1 AAAAAAAGAAGAAAG
* *
56632551 AGAAGAAGAAGAA
1 AAAAAAAGAAGAA
56632564 GAAGAAGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
15 18 0.69
16 2 0.08
17 6 0.23
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (15 bp):
AAAAAAAGAAGAAAG
Found at i:56632589 original size:6 final size:5
Alignment explanation
Indices: 56632517--56632590 Score: 53
Period size: 6 Copynumber: 13.8 Consensus size: 5
56632507 TAAAAAATAC
*
56632517 AAAA- AAAAG AGAAAG -AAAG AAAAA AAGAAG AAAGAG AAGAAG AAGAAG
1 AAAAG AAAAG A-AAAG AAAAG AAAAG AA-AAG AAA-AG AA-AAG AA-AAG
*
56632565 AAGAAG AATAG AAAAG AAAAGG AAAA
1 AA-AAG AAAAG AAAAG AAAA-G AAAA
56632591 AAGGAGAGGC
Statistics
Matches: 59, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
4 8 0.14
5 17 0.29
6 33 0.56
7 1 0.02
ACGTcount: A:0.74, C:0.00, G:0.24, T:0.01
Consensus pattern (5 bp):
AAAAG
Found at i:56632764 original size:44 final size:43
Alignment explanation
Indices: 56632700--56632782 Score: 112
Period size: 44 Copynumber: 1.9 Consensus size: 43
56632690 GGGGTACGAA
* * *
56632700 GTGATCAGAGCGGCTTAAATTTTAGATCAAATTGGGGCATGGTG
1 GTGATCAGAGCAGCTCAAATTTT-GATCAAATCGGGGCATGGTG
* *
56632744 GTGATCAGAGTAGCTCAAATTTTGATCAGATCGGGGCAT
1 GTGATCAGAGCAGCTCAAATTTTGATCAAATCGGGGCAT
56632783 ATGATGATCT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
43 14 0.41
44 20 0.59
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.29
Consensus pattern (43 bp):
GTGATCAGAGCAGCTCAAATTTTGATCAAATCGGGGCATGGTG
Found at i:56634117 original size:99 final size:99
Alignment explanation
Indices: 56633906--56634130 Score: 317
Period size: 98 Copynumber: 2.3 Consensus size: 99
56633896 AAACCATAGT
* * * * **
56633906 TTGCAATTCAAAGATTGAATCCACAACGGTGAATCTTACTTCCCAGGCGATGCAGCGGAGTATTT
1 TTGCAATTCAAAGATTGAAGCCACAACGATAAATCTTACTTCCCAGGCGATGCAGCGGAGCAGAT
* *
56633971 TGAAGCTACAACGGTGAATCTCACTTCCCTGACA
66 TGAAGCTACAACAGTGAATCTCACTTCCCCGACA
*
56634005 TTGCAATTCAAAGATTGAAGCCACAACGATAAATCTTAC-TCCCAGGCGATGCAGGGGAGCAGAT
1 TTGCAATTCAAAGATTGAAGCCACAACGATAAATCTTACTTCCCAGGCGATGCAGCGGAGCAGAT
* *
56634069 TGAAGCTATAATAGTGAATCTCACTTCCCCGACA
66 TGAAGCTACAACAGTGAATCTCACTTCCCCGACA
* *
56634103 TTGCAATTTAAAAGATTGAAGCTACAAC
1 TTGCAA-TTCAAAGATTGAAGCCACAAC
56634131 AGCGGATCTT
Statistics
Matches: 112, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
98 57 0.51
99 55 0.49
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.25
Consensus pattern (99 bp):
TTGCAATTCAAAGATTGAAGCCACAACGATAAATCTTACTTCCCAGGCGATGCAGCGGAGCAGAT
TGAAGCTACAACAGTGAATCTCACTTCCCCGACA
Found at i:56634155 original size:50 final size:49
Alignment explanation
Indices: 56634103--56635185 Score: 890
Period size: 50 Copynumber: 22.7 Consensus size: 49
56634093 TTCCCCGACA
* *
56634103 TTGCAATTTAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGC
1 TTGCAGTTGAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGC
* * * *
56634152 ATTGCAGTGGAACAGATTGAAGCTACAGCAGCGGATCTTGC-TTCC---C
1 -TTGCAGTTGAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGC
** * * *
56634198 GGGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTG
1 TTGCAGTTGAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAG-C
* * *
56634248 TTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTGC-TTCC---C
1 TTGCAGTTGAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGC
* * *
56634293 TGGCAGTTAAAAAGATTGAAACTACAACAGCGGATCTTACTTTCCTAGC
1 TTGCAGTTGAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGC
* * * *
56634342 ATTGCAGTGGAACAGATTGAAGTTACAGCAGCGGATCTTAC-TTCC---C
1 -TTGCAGTTGAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGC
* * * * * * *
56634388 TAGCAATTAAAAAATATTGAAGCTACAACAACGGATCTTATTTTCCTAGTG
1 TTGCAGTT-GAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAG-C
* * * *
56634439 TTACAG-TGAAACGGATTGAAGTTACAACAGCGGATCTTGC-TTCC---C
1 TTGCAGTTGAAA-AGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGC
* * * *
56634484 TTGCAATTAAAAATATTGAAGCTACAACAGCGGATCTTACTTTCCTTGC
1 TTGCAGTTGAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGC
* * ** *
56634533 GTTGTAG-TGAAACAGATTGAAGCTACAGCAGTAGATCTTGC-TTCC---C
1 -TTGCAGTTGAAA-AGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGC
** * * * * *
56634579 CGGTAATTAAAAATATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTG
1 TTGCAGTTGAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAG-C
* * *
56634629 TTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTGC-TTCC---C
1 TTGCAGTTGAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGC
** * *
56634674 CGGCAGTTAAAAAGATTGAAGCTACAACAGCGGATCTTATTTTCCTAGC
1 TTGCAGTTGAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGC
* * * * *
56634723 GTTGCAG-TGAAACGGATTGAAGCTACAGCAACAGATCTTGC-TTCC---C
1 -TTGCAGTTGAAA-AGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGC
* *
56634769 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGC
1 TTGCAGTTGAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGC
* *
56634818 GTTACAG-TGAAATAGATTGAAGCTACAGCAGCGGATCTTACTTTCCTAGC
1 -TTGCAGTTGAAA-AGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGC
* * * * *
56634868 ATTGCAGTGGAACAGATTGAAGCTACAGCAGCAGATCTTGC-TTCC---C
1 -TTGCAGTTGAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGC
* * * *
56634914 -CGACAGTTAAAAAGATTGAAGCTACAACAACGGATCTTACTTTCCTAGTG
1 TTG-CAGTTGAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAG-C
* *
56634964 TTGCAGTGGAACAA-ATTGAAGCTACAACAGCGGATCTTGC-TTCC---C
1 TTGCAGTTGAA-AAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGC
* * *
56635009 TGGCAGTTAAAAAGATTGAAGCTACAACAGCGAATCTTACTTTCCTAGC
1 TTGCAGTTGAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGC
* * * * *
56635058 ATTGCAGTAGAACAGATTGAAGCTACAGCAGCGGATCTTGCTTCCCTAG-
1 -TTGCAGTTGAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGC
* *
56635107 -T--AGTTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTG
1 TTGCAGTTGAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAG-C
* *
56635154 TTGCAGTGGAACAGATTGAAGCTACAACAGCG
1 TTGCAGTTGAAAAGATTGAAGCTACAACAGCG
56635186 ATTGAAGCTA
Statistics
Matches: 807, Mismatches: 163, Indels: 126
0.74 0.15 0.11
Matches are distributed among these distances:
44 3 0.00
45 286 0.35
46 74 0.09
47 5 0.01
48 1 0.00
49 56 0.07
50 373 0.46
51 9 0.01
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (49 bp):
TTGCAGTTGAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGC
Found at i:56634224 original size:95 final size:95
Alignment explanation
Indices: 56634105--56634856 Score: 1108
Period size: 95 Copynumber: 7.9 Consensus size: 95
56634095 CCCCGACATT
* * *
56634105 GCAATTTAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCATTGCAGTGGAACAGATT
1 GCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGATT
*
56634170 GAAGCTACAGCAGCGGATCTTGCTTCCCGG
66 GAAGCTACAGCAGCGGATCTTGCTTCCCTG
* *
56634200 GCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATT
1 GCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGATT
*
56634265 GAAGCTACAACAGCGGATCTTGCTTCCCTG
66 GAAGCTACAGCAGCGGATCTTGCTTCCCTG
* * * *
56634295 GCAGTTAAAAAGATTGAAACTACAACAGCGGATCTTACTTTCCTAGCATTGCAGTGGAACAGATT
1 GCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGATT
* * *
56634360 GAAGTTACAGCAGCGGATCTTACTTCCCTA
66 GAAGCTACAGCAGCGGATCTTGCTTCCCTG
* * * * * *
56634390 GCAATTAAAAAATATTGAAGCTACAACAACGGATCTTATTTTCCTAGTGTTACAGTGAAACGGAT
1 GCAATT-AAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGAT
* * *
56634455 TGAAGTTACAACAGCGGATCTTGCTTCCCTT
65 TGAAGCTACAGCAGCGGATCTTGCTTCCCTG
* * *
56634486 GCAATTAAAAATATTGAAGCTACAACAGCGGATCTTACTTTCCTTGCGTTGTAGTGAAACAGATT
1 GCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGATT
** *
56634551 GAAGCTACAGCAGTAGATCTTGCTTCCCCG
66 GAAGCTACAGCAGCGGATCTTGCTTCCCTG
* * * *
56634581 GTAATTAAAAATATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATT
1 GCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGATT
* *
56634646 GAAGCTACAACAGCGGATCTTGCTTCCCCG
66 GAAGCTACAGCAGCGGATCTTGCTTCCCTG
* * *
56634676 GCAGTTAAAAAGATTGAAGCTACAACAGCGGATCTTATTTTCCTAGCGTTGCAGTGAAACGGATT
1 GCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGATT
* * *
56634741 GAAGCTACAGCAACAGATCTTGCTTCCCTT
66 GAAGCTACAGCAGCGGATCTTGCTTCCCTG
* *
56634771 GCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTACAGTGAAATAGATT
1 GCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGATT
56634836 GAAGCTACAGCAGCGGATCTT
66 GAAGCTACAGCAGCGGATCTT
56634857 ACTTTCCTAG
Statistics
Matches: 590, Mismatches: 66, Indels: 2
0.90 0.10 0.00
Matches are distributed among these distances:
95 507 0.86
96 83 0.14
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.27
Consensus pattern (95 bp):
GCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGATT
GAAGCTACAGCAGCGGATCTTGCTTCCCTG
Found at i:56634322 original size:190 final size:190
Alignment explanation
Indices: 56634112--56635417 Score: 1353
Period size: 190 Copynumber: 6.9 Consensus size: 190
56634102 ATTGCAATTT
*
56634112 AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCATTGCAGTGGAACAGATTGAAGCTA
1 AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCATTGCAGTGAAACAGATTGAAGCTA
*
56634177 CAGCAGCGGATCTTGCTTCCCGGGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTC
66 CAGCAGCGGATCTTACTTCCCGGGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTC
*
56634242 CTAGTGTTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTGCTTCCCTGGCAGTTA
131 CTAGTGTTGCAGTGAAACAGATTGAAGCTACAACAGCGGATCTTGCTTCCCTGGCAGTTA
* * *
56634302 AAAAGATTGAAACTACAACAGCGGATCTTACTTTCCTAGCATTGCAGTGGAACAGATTGAAGTTA
1 AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCATTGCAGTGAAACAGATTGAAGCTA
** * * *
56634367 CAGCAGCGGATCTTACTTCCCTAGCAATTAAAAAATATTGAAGCTACAACAACGGATCTTATTTT
66 CAGCAGCGGATCTTACTTCCCGGGCAATT-AAAAAGATTGAAGCTACAACAGCGGATCTTACTTT
* * * * *
56634432 CCTAGTGTTACAGTGAAACGGATTGAAGTTACAACAGCGGATCTTGCTTCCCTTGCAATTA
130 CCTAGTGTTGCAGTGAAACAGATTGAAGCTACAACAGCGGATCTTGCTTCCCTGGCAGTTA
* * * *
56634493 AAAATATTGAAGCTACAACAGCGGATCTTACTTTCCTTGCGTTGTAGTGAAACAGATTGAAGCTA
1 AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCATTGCAGTGAAACAGATTGAAGCTA
** * * * *
56634558 CAGCAGTAGATCTTGCTTCCCCGGTAATTAAAAATATTGAAGCTACAACAGCGGATCTTACTTTC
66 CAGCAGCGGATCTTACTTCCCGGGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTC
* *
56634623 CTAGTGTTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTGCTTCCCCGGCAGTTA
131 CTAGTGTTGCAGTGAAACAGATTGAAGCTACAACAGCGGATCTTGCTTCCCTGGCAGTTA
* * *
56634683 AAAAGATTGAAGCTACAACAGCGGATCTTATTTTCCTAGCGTTGCAGTGAAACGGATTGAAGCTA
1 AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCATTGCAGTGAAACAGATTGAAGCTA
* * * **
56634748 CAGCAACAGATCTTGCTTCCCTTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTC
66 CAGCAGCGGATCTTACTTCCCGGGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTC
* * * * * * **
56634813 CTAGCGTTACAGTGAAATAGATTGAAGCTACAGCAGCGGATCTTACTTTCCTAGCATTGCAGTGG
131 CTAGTGTTGCAGTGAAACAGATTGAAGCTACAACAGCGGATCTTGC-TTCC---C-TGGCAGTTA
* * * * ** * *
56634878 AACAGATTGAAGCTACAGCAGCAGATCTTGC-TTCCCCG-A---CAGTTAAAAAGATTGAAGCTA
1 AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCATTGCAGTGAAACAGATTGAAGCTA
* * * * * *
56634938 CAACAACGGATCTTACTTTCCTAGTGTTGCAGTGGAACAA-ATTGAAGCTACAACAGCGGATCTT
66 CAGCAGCGGATCTTAC-TTCC-CG-G--GCAAT-TAAAAAGATTGAAGCTACAACAGCGGATCTT
* * * * * * *
56635002 GC-TTCC--CTG--GCAGTTAAAAAGATTGAAGCTACAACAGCGAATCTTACTTTCCTAGCATTG
125 ACTTTCCTAGTGTTGCAGTGAAACAGATTGAAGCTACAACAGCGGATCTTGC-TTCC---C-TGG
56635062 CAG-TA
185 CAGTTA
* * * * * *
56635067 GAACAGATTGAAGCTACAGCAGCGGATCTTGCTTCCCTAG---T--AGTTAAAAAGATTGAAGCT
1 -AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCATTGCAGTGAAACAGATTGAAGCT
* * * ** * *
56635127 ACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTACAACAGC-GAT-TG
65 ACAGCAGCGGATCTTAC-TTCC-CG-G--GCAATTAAAAAGATTGAAGCTACAACAGCGGATCTT
* * * * *
56635190 A-------A--GCTACA---ACAGC-GATTGAAGCTACAACAGCGGATTTTGCTTCCCCGGCAGT
125 ACTTTCCTAGTGTTGCAGTGA-AACAGATTGAAGCTACAACAGCGGATCTTGCTTCCCTGGCAGT
56635242 TA
189 TA
* *
56635244 AAAAGATTGAAGCTACAGCAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGATTGAAGCTA
1 AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCATTGCAGTGAAACAGATTGAAGCTA
* * **
56635309 CAGCAACGGATCTTTCTTCCCTTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTC
66 CAGCAGCGGATCTTACTTCCCGGGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTC
* *
56635374 CTAGCGTTGCAGTGAAACAGATTGAAGCTACAGCAGCGGATCTT
131 CTAGTGTTGCAGTGAAACAGATTGAAGCTACAACAGCGGATCTT
56635418 ACTTTCCTAG
Statistics
Matches: 949, Mismatches: 126, Indels: 82
0.82 0.11 0.07
Matches are distributed among these distances:
176 65 0.07
177 6 0.01
178 2 0.00
179 1 0.00
180 8 0.01
181 56 0.06
182 2 0.00
184 2 0.00
185 1 0.00
187 4 0.00
188 1 0.00
189 8 0.01
190 538 0.57
191 180 0.19
192 1 0.00
194 10 0.01
195 60 0.06
196 4 0.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.26
Consensus pattern (190 bp):
AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCATTGCAGTGAAACAGATTGAAGCTA
CAGCAGCGGATCTTACTTCCCGGGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTC
CTAGTGTTGCAGTGAAACAGATTGAAGCTACAACAGCGGATCTTGCTTCCCTGGCAGTTA
Found at i:56634920 original size:95 final size:95
Alignment explanation
Indices: 56634781--56635839 Score: 1145
Period size: 95 Copynumber: 11.2 Consensus size: 95
56634771 GCAATTAAAA
* * * * *
56634781 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTACAGTGAAATAGATTGAAGCTACAG
1 AGATTGAAGCTACAACAGCGGATCTTGC-TTCC--CCG--ACAGTTAAAAAGATTGAAGCTACAA
56634846 CAGCGGATCTTACTTTCCTAGCATTGCAGTGGAAC
61 CAGCGGATCTTACTTTCCTAGCATTGCAGTGGAAC
* * *
56634881 AGATTGAAGCTACAGCAGCAGATCTTGCTTCCCCGACAGTTAAAAAGATTGAAGCTACAACAACG
1 AGATTGAAGCTACAACAGCGGATCTTGCTTCCCCGACAGTTAAAAAGATTGAAGCTACAACAGCG
**
56634946 GATCTTACTTTCCTAGTGTTGCAGTGGAAC
66 GATCTTACTTTCCTAGCATTGCAGTGGAAC
* * *
56634976 AAATTGAAGCTACAACAGCGGATCTTGCTTCCCTGGCAGTTAAAAAGATTGAAGCTACAACAGCG
1 AGATTGAAGCTACAACAGCGGATCTTGCTTCCCCGACAGTTAAAAAGATTGAAGCTACAACAGCG
* *
56635041 AATCTTACTTTCCTAGCATTGCAGTAGAAC
66 GATCTTACTTTCCTAGCATTGCAGTGGAAC
* * *
56635071 AGATTGAAGCTACAGCAGCGGATCTTGCTT-CCCTAGTAGTTAAAAAGATTGAAGCTACAACAGC
1 AGATTGAAGCTACAACAGCGGATCTTGCTTCCCCGA-CAGTTAAAAAGATTGAAGCTACAACAGC
**
56635135 GGATCTTACTTTCCTAGTGTTGCAGTGGAAC
65 GGATCTTACTTTCCTAGCATTGCAGTGGAAC
*** * * **
56635166 AGATTGAAGCTACAACAGC-GA--TTG---AAGCTACA---ACAGCGATTGAAGCTACAACAGCG
1 AGATTGAAGCTACAACAGCGGATCTTGCTTCCCCGACAGTTAAAAAGATTGAAGCTACAACAGCG
* * ** ** *
56635222 GATTTTGC-TTCC---C-CGGCAGTTAAAA
66 GATCTTACTTTCCTAGCATTGCAGTGGAAC
* * * * * * *
56635247 AGATTGAAGCTACAGCAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGATTGAAGCTACAG
1 AGATTGAAGCTACAACAGCGGATCTTGC-TTCC--CCG--ACAGTTAAAAAGATTGAAGCTACAA
* * * ** *
56635312 CAACGGATCTTTC-TTCC---C-TTGCAATTAAAA
61 CAGCGGATCTTACTTTCCTAGCATTGCAGTGGAAC
* * * * * *
56635342 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGATTGAAGCTACAG
1 AGATTGAAGCTACAACAGCGGATCTTGC-TTCC--CCG--ACAGTTAAAAAGATTGAAGCTACAA
*
56635407 CAGCGGATCTTACTTTCCTAGCATTACAGTGGAAC
61 CAGCGGATCTTACTTTCCTAGCATTGCAGTGGAAC
* * *
56635442 AGATTGAAGGTAC-ACAGCAGATCTTGCTTCCCCGACAGTTAAAAAGATTGAAGCTACAACAACG
1 AGATTGAAGCTACAACAGCGGATCTTGCTTCCCCGACAGTTAAAAAGATTGAAGCTACAACAGCG
56635506 GATCTTACTTTCCTAGCATTGCAGTGGAAC
66 GATCTTACTTTCCTAGCATTGCAGTGGAAC
* *
56635536 AGATTGAAGCTAC-ACAGCAGATCTTGCTTCCCCGACAGTTAAAAAGATTGAAGCTACAACAACG
1 AGATTGAAGCTACAACAGCGGATCTTGCTTCCCCGACAGTTAAAAAGATTGAAGCTACAACAGCG
* ** *
56635600 GATCTTACTTTTCTAGTGTTGCAGTGAAAC
66 GATCTTACTTTCCTAGCATTGCAGTGGAAC
* *
56635630 AGATTGAAGCTACAACAGCGGATCTTGCTTCCCTGGCAGTTAAAAAGATTGAAGCTACAACAGCG
1 AGATTGAAGCTACAACAGCGGATCTTGCTTCCCCGACAGTTAAAAAGATTGAAGCTACAACAGCG
* *
56635695 AATCTTACTTTCCTAGCATTGCAGTAGAAC
66 GATCTTACTTTCCTAGCATTGCAGTGGAAC
* ** * *
56635725 AGATTGAAGCTACAGCAGCGGATCTTGCTTCCCCGGTAGTTAAAAATATTGAAGCTACAACAACG
1 AGATTGAAGCTACAACAGCGGATCTTGCTTCCCCGACAGTTAAAAAGATTGAAGCTACAACAGCG
** *
56635790 GATCTTACTTTCCTAGTGTTGCAGTAGAAC
66 GATCTTACTTTCCTAGCATTGCAGTGGAAC
56635820 AGATTGAAGCTACAACAGCG
1 AGATTGAAGCTACAACAGCG
56635840 ATTGAAGCTA
Statistics
Matches: 834, Mismatches: 103, Indels: 49
0.85 0.10 0.05
Matches are distributed among these distances:
81 25 0.03
82 2 0.00
84 2 0.00
85 4 0.00
86 27 0.03
89 1 0.00
90 5 0.01
92 5 0.01
94 160 0.19
95 530 0.64
96 6 0.01
97 2 0.00
98 4 0.00
99 17 0.02
100 44 0.05
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.26
Consensus pattern (95 bp):
AGATTGAAGCTACAACAGCGGATCTTGCTTCCCCGACAGTTAAAAAGATTGAAGCTACAACAGCG
GATCTTACTTTCCTAGCATTGCAGTGGAAC
Found at i:56635190 original size:18 final size:18
Alignment explanation
Indices: 56635167--56635221 Score: 110
Period size: 18 Copynumber: 3.1 Consensus size: 18
56635157 CAGTGGAACA
56635167 GATTGAAGCTACAACAGC
1 GATTGAAGCTACAACAGC
56635185 GATTGAAGCTACAACAGC
1 GATTGAAGCTACAACAGC
56635203 GATTGAAGCTACAACAGC
1 GATTGAAGCTACAACAGC
56635221 G
1 G
56635222 GATTTTGCTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (18 bp):
GATTGAAGCTACAACAGC
Found at i:56635306 original size:131 final size:131
Alignment explanation
Indices: 56635072--56635310 Score: 406
Period size: 131 Copynumber: 1.8 Consensus size: 131
56635062 CAGTAGAACA
* * *
56635072 GATTGAAGCTACAGCAGCGGATCTTGCTTCCCTAGTAGTTAAAAAGATTGAAGCTACAACAGCGG
1 GATTGAAGCTACAACAGCGGATCTTGCTTCCCCAGCAGTTAAAAAGATTGAAGCTACAACAGCGG
* *
56635137 ATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTACAACAGCGATTGAAGCTACAACAG
66 ATCTTACTTTCCTAGCGTTGCAGTGAAACAGATTGAAGCTACAACAGCGATTGAAGCTACAACAG
56635202 C
131 C
* * *
56635203 GATTGAAGCTACAACAGCGGATTTTGCTTCCCCGGCAGTTAAAAAGATTGAAGCTACAGCAGCGG
1 GATTGAAGCTACAACAGCGGATCTTGCTTCCCCAGCAGTTAAAAAGATTGAAGCTACAACAGCGG
56635268 ATCTTACTTTCCTAGCGTTGCAGTGAAACAGATTGAAGCTACA
66 ATCTTACTTTCCTAGCGTTGCAGTGAAACAGATTGAAGCTACA
56635311 GCAACGGATC
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
131 100 1.00
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (131 bp):
GATTGAAGCTACAACAGCGGATCTTGCTTCCCCAGCAGTTAAAAAGATTGAAGCTACAACAGCGG
ATCTTACTTTCCTAGCGTTGCAGTGAAACAGATTGAAGCTACAACAGCGATTGAAGCTACAACAG
C
Found at i:56635312 original size:50 final size:50
Alignment explanation
Indices: 56635203--56635839 Score: 577
Period size: 50 Copynumber: 13.4 Consensus size: 50
56635193 CTACAACAGC
* * * *
56635203 GATTGAAGCTACAACAGCGGATTTTGC-TTCC--CCG--GCAGTTAAAAA
1 GATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTTAAACA
* *
56635248 GATTGAAGCTACAGCAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACA
1 GATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTTAAACA
* * * * *
56635298 GATTGAAGCTACAGCAACGGATCTTTC-TTCC---C-TTGCAATTAAAAA
1 GATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTTAAACA
*
56635343 GATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACA
1 GATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTTAAACA
* * * **
56635393 GATTGAAGCTACAGCAGCGGATCTTACTTTCCTAGCATTACAGTGGAACA
1 GATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTTAAACA
* * * * * *
56635443 GATTGAAGGTAC-ACAGCAGATCTTGC-TTCC--CCG--ACAGTTAAAAA
1 GATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTTAAACA
* * **
56635487 GATTGAAGCTACAACAACGGATCTTACTTTCCTAGCATTGCAGTGGAACA
1 GATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTTAAACA
* * * * *
56635537 GATTGAAGCTAC-ACAGCAGATCTTGC-TTCC--CCG--ACAGTTAAAAA
1 GATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTTAAACA
* * * *
56635581 GATTGAAGCTACAACAACGGATCTTACTTTTCTAGTGTTGCAGTGAAACA
1 GATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTTAAACA
* * *
56635631 GATTGAAGCTACAACAGCGGATCTTGC-TTCC---C-TGGCAGTTAAAAA
1 GATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTTAAACA
* *
56635676 GATTGAAGCTACAACAGCGAATCTTACTTTCCTAGCATTGCAG-TAGAACA
1 GATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTTA-AACA
* * * * *
56635726 GATTGAAGCTACAGCAGCGGATCTTGC-TTCC--CCG--GTAGTTAAAAA
1 GATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTTAAACA
* * *
56635771 TATTGAAGCTACAACAACGGATCTTACTTTCCTAGTGTTGCAG-TAGAACA
1 GATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTTA-AACA
56635821 GATTGAAGCTACAACAGCG
1 GATTGAAGCTACAACAGCG
56635840 ATTGAAGCTA
Statistics
Matches: 471, Mismatches: 86, Indels: 65
0.76 0.14 0.10
Matches are distributed among these distances:
44 38 0.08
45 144 0.31
46 28 0.06
47 1 0.00
48 13 0.03
49 39 0.08
50 208 0.44
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.26
Consensus pattern (50 bp):
GATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTTAAACA
Found at i:56635372 original size:226 final size:233
Alignment explanation
Indices: 56634258--56635654 Score: 1263
Period size: 240 Copynumber: 5.9 Consensus size: 233
56634248 TTGCAGTGGA
* *
56634258 ACAGATTGAAGCTACAACAGCGGATCTTGCTTCCCTGGCAGTTAAAAAGATTGAAACTACAACAG
1 ACAGATTGAAGCTACAACAGCGGATCTTGCTTCCCCGGCAGTTAAAAAGATTGAAGCTACAACAG
* * *
56634323 CGGATCTTACTTTCCTAGCATTGCAGTGGAACAGATTGAAGTTACAGCAGCGGATCTTACTTCCC
66 CGGATCTTACTTTCCTAGCATTGCAGTGAAACAGATTGAAGCTACAGCAGCGGATCTTGCTTCCC
* * * * * *
56634388 TAGCAATTAAAAAATATTGAAGCTACAACAACGGATCTTATTTTCCTAGTGTTACAGTGAAACGG
131 TAGCAGTT-AAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGAAACAG
* * * *
56634453 ATTGAAGTTACAACAGCGGATCTTGCTTCCCTTGCAATTA-A--
195 ATTGAAGCTACAACAGC-GATC-TG-ATACCTAGC-A-TACAGG
* * * * * * *
56634494 AAATATTGAAGCTACAACAGCGGATCTTACTTTCCTTGCGTTGTAGTGAAACAGATTGAAGCTAC
1 ACAGATTGAAGCTACAACAGCGGATCTTGC-TTCC--CCG--GCAGTTAAAAAGATTGAAGCTAC
* ** * * ** * * * *
56634559 AGCAGTAGATCTTGCTTCCCCGGTAATT--A---AAA-ATATTGAAGCTACAACAGCGGATCTTA
61 AACAGCGGATCTTACTTTCCTAG-CATTGCAGTGAAACAGATTGAAGCTACAGCAGCGGATCTTG
* ** * * **
56634618 CTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTGC-TTCC--CCG--GC
125 CTTCCCTA-----GCAGTTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGC
* * * * * *
56634678 AGTTAAAAAGATTGAAGCTACAACAGCGGATCTTATTTTCCTAGCGTTGCAGTG
185 AGTGAAACAGATTGAAGCTACAACAGC-GATCTGA--TACCTAGC-ATACAG-G
* * * * ** *
56634732 AAACGGATTGAAGCTACAGCAACAGATCTTGCTTCCCTTGCAATTAAAAAGATTGAAGCTACAAC
1 --ACAGATTGAAGCTACAACAGCGGATCTTGCTTCCCCGGCAGTTAAAAAGATTGAAGCTACAAC
* * * * *
56634797 AGCGGATCTTACTTTCCTAGCGTTACAGTGAAATAGATTGAAGCTACAGCAGCGGATCTTACTTT
64 AGCGGATCTTACTTTCCTAGCATTGCAGTGAAACAGATTGAAGCTACAGCAGCGGATCTTGCTTC
* * * * ** *
56634862 CCTAGCA-TTGCAGTGGAACAGATTGAAGCTACAGCAGCAGATCTTGC-TTCC--CCG--ACAGT
129 CCTAGCAGTT--A----AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGT
* * * * * ** *
56634921 TAAAAAGATTGAAGCTACAACAACGGATCTTACTTTCCTAGTGTTGCAGTGG
188 GAAACAGATTGAAGCTACAACAGC-GATCTGA--TACCTAG-CATACA--GG
* *
56634973 AACAAATTGAAGCTACAACAGCGGATCTTGCTTCCCTGGCAGTTAAAAAGATTGAAGCTACAACA
1 -ACAGATTGAAGCTACAACAGCGGATCTTGCTTCCCCGGCAGTTAAAAAGATTGAAGCTACAACA
*
56635038 GCGAATCTTACTTTCCTAGCATTGCAGT-AGAACAGATTGAAGCTACAGCAGCGGATCTTGCTTC
65 GCGGATCTTACTTTCCTAGCATTGCAGTGA-AACAGATTGAAGCTACAGCAGCGGATCTTGCTTC
* *
56635102 CCTAGTAGTTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACA
129 CCTAGCAGTTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGAAACA
*
56635167 GATTGAAGCTACAACAGCGAT-TGA-AGCTA-CA-ACA-G
194 GATTGAAGCTACAACAGCGATCTGATACCTAGCATACAGG
* *
56635202 -C-GATTGAAGCTACAACAGCGGATTTTGCTTCCCCGGCAGTTAAAAAGATTGAAGCTACAGCAG
1 ACAGATTGAAGCTACAACAGCGGATCTTGCTTCCCCGGCAGTTAAAAAGATTGAAGCTACAACAG
* * *
56635265 CGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGATTGAAGCTACAGCAACGGATCTTTCTTCCC
66 CGGATCTTACTTTCCTAGCATTGCAGTGAAACAGATTGAAGCTACAGCAGCGGATCTTGCTTCCC
* * *
56635330 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGA
131 TAGCAGTTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGAAACAGA
* * *
56635395 TTGAAGCTACAGCAGCGGATCTTACTTTCCTAGCATTACAGTGG
196 TTGAAGCTACAACAGC-GATCTGA--TACCTAGCA-TACA--GG
* * *
56635439 AACAGATTGAAGGTAC-ACAGCAGATCTTGCTTCCCCGACAGTTAAAAAGATTGAAGCTACAACA
1 -ACAGATTGAAGCTACAACAGCGGATCTTGCTTCCCCGGCAGTTAAAAAGATTGAAGCTACAACA
* * *
56635503 ACGGATCTTACTTTCCTAGCATTGCAGTGGAACAGATTGAAGCTACA-CAGCAGATCTTGCTTCC
65 GCGGATCTTACTTTCCTAGCATTGCAGTGAAACAGATTGAAGCTACAGCAGCGGATCTTGCTTCC
* * *
56635567 C-CGACAGTTAAAAAGATTGAAGCTACAACAACGGATCTTACTTTTCTAGTGTTGCAGTGAAACA
130 CTAG-CAGTTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGAAACA
56635631 GATTGAAGCTACAACAGCGGATCT
194 GATTGAAGCTACAACAGC-GATCT
56635655 TGCTTCCCTG
Statistics
Matches: 962, Mismatches: 142, Indels: 112
0.79 0.12 0.09
Matches are distributed among these distances:
226 192 0.20
227 5 0.01
228 2 0.00
229 1 0.00
231 3 0.00
232 4 0.00
234 8 0.01
235 104 0.11
236 63 0.07
237 9 0.01
238 97 0.10
239 106 0.11
240 322 0.33
241 42 0.04
242 4 0.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (233 bp):
ACAGATTGAAGCTACAACAGCGGATCTTGCTTCCCCGGCAGTTAAAAAGATTGAAGCTACAACAG
CGGATCTTACTTTCCTAGCATTGCAGTGAAACAGATTGAAGCTACAGCAGCGGATCTTGCTTCCC
TAGCAGTTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGAAACAGA
TTGAAGCTACAACAGCGATCTGATACCTAGCATACAGG
Found at i:56635844 original size:18 final size:18
Alignment explanation
Indices: 56635821--56635857 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
56635811 CAGTAGAACA
56635821 GATTGAAGCTACAACAGC
1 GATTGAAGCTACAACAGC
56635839 GATTGAAGCTACAACAGC
1 GATTGAAGCTACAACAGC
56635857 G
1 G
56635858 GATCTTGCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (18 bp):
GATTGAAGCTACAACAGC
Found at i:56635903 original size:45 final size:45
Alignment explanation
Indices: 56635839--56636003 Score: 195
Period size: 45 Copynumber: 3.6 Consensus size: 45
56635829 CTACAACAGC
56635839 GATTGAAGCTACAACAGCGGATCTTGCTTCCCCGGCAGTTAAAAA
1 GATTGAAGCTACAACAGCGGATCTTGCTTCCCCGGCAGTTAAAAA
* * * * *
56635884 GATTGAAGCTACAATAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACA
1 GATTGAAGCTACAACAGCGGATCTTGC-TTCC--CCG--GCAGTTAAAAA
* * *
56635934 GATTGAAGCTACAGCAACGGATCTTGCTTCCCTGGCAGTTAAAAA
1 GATTGAAGCTACAACAGCGGATCTTGCTTCCCCGGCAGTTAAAAA
* *
56635979 GATTGAAGCTGCTACAGCGGATCTT
1 GATTGAAGCTACAACAGCGGATCTT
56636004 ACTTTCCTAG
Statistics
Matches: 98, Mismatches: 17, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
45 55 0.56
46 4 0.04
47 1 0.01
48 2 0.02
49 4 0.04
50 32 0.33
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (45 bp):
GATTGAAGCTACAACAGCGGATCTTGCTTCCCCGGCAGTTAAAAA
Found at i:56635924 original size:113 final size:113
Alignment explanation
Indices: 56635726--56635946 Score: 372
Period size: 113 Copynumber: 2.0 Consensus size: 113
56635716 CAGTAGAACA
* * *
56635726 GATTGAAGCTACAGCAGCGGATCTTGCTTCCCCGGTAGTTAAAAATATTGAAGCTACAACAACGG
1 GATTGAAGCTACAACAGCGGATCTTGCTTCCCCGGCAGTTAAAAAGATTGAAGCTACAACAACGG
*
56635791 ATCTTACTTTCCTAGTGTTGCAGT-AGAACAGATTGAAGCTACAACAGC
66 ATCTTACTTTCCTAGCGTTGCAGTGA-AACAGATTGAAGCTACAACAGC
* *
56635839 GATTGAAGCTACAACAGCGGATCTTGCTTCCCCGGCAGTTAAAAAGATTGAAGCTACAATAGCGG
1 GATTGAAGCTACAACAGCGGATCTTGCTTCCCCGGCAGTTAAAAAGATTGAAGCTACAACAACGG
56635904 ATCTTACTTTCCTAGCGTTGCAGTGAAACAGATTGAAGCTACA
66 ATCTTACTTTCCTAGCGTTGCAGTGAAACAGATTGAAGCTACA
56635947 GCAACGGATC
Statistics
Matches: 101, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
113 100 0.99
114 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (113 bp):
GATTGAAGCTACAACAGCGGATCTTGCTTCCCCGGCAGTTAAAAAGATTGAAGCTACAACAACGG
ATCTTACTTTCCTAGCGTTGCAGTGAAACAGATTGAAGCTACAACAGC
Found at i:56636002 original size:95 final size:95
Alignment explanation
Indices: 56635839--56636023 Score: 307
Period size: 95 Copynumber: 1.9 Consensus size: 95
56635829 CTACAACAGC
* *
56635839 GATTGAAGCTACAACAGCGGATCTTGCTTCCCCGGCAGTTAAAAAGATTGAAGCTACAATAGCGG
1 GATTGAAGCTACAACAACGGATCTTGCTTCCCCGGCAGTTAAAAAGATTGAAGCTACAACAGCGG
*
56635904 ATCTTACTTTCCTAGCGTTGCAGTGAAACA
66 ATCTTACTTTCCTAGCATTGCAGTGAAACA
* * * *
56635934 GATTGAAGCTACAGCAACGGATCTTGCTTCCCTGGCAGTTAAAAAGATTGAAGCTGCTACAGCGG
1 GATTGAAGCTACAACAACGGATCTTGCTTCCCCGGCAGTTAAAAAGATTGAAGCTACAACAGCGG
56635999 ATCTTACTTTCCTAGCATTGCAGTG
66 ATCTTACTTTCCTAGCATTGCAGTG
56636024 GAATAGAATA
Statistics
Matches: 83, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
95 83 1.00
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (95 bp):
GATTGAAGCTACAACAACGGATCTTGCTTCCCCGGCAGTTAAAAAGATTGAAGCTACAACAGCGG
ATCTTACTTTCCTAGCATTGCAGTGAAACA
Found at i:56636002 original size:208 final size:208
Alignment explanation
Indices: 56635631--56636022 Score: 651
Period size: 208 Copynumber: 1.9 Consensus size: 208
56635621 CAGTGAAACA
*
56635631 GATTGAAGCTACAACAGCGGATCTTGCTTCCCTGGCAGTTAAAAAGATTGAAGCTACAACAGCGA
1 GATTGAAGCTACAACAGCGGATCTTGCTTCCCCGGCAGTTAAAAAGATTGAAGCTACAACAGCGA
*
56635696 ATCTTACTTTCCTAGCATTGCAGTAGAACAGATTGAAGCTACAGCAGCGGATCTTGCTTCCCCGG
66 ATCTTACTTTCCTAGCATTGCAGTAGAACAGATTGAAGCTACAGCAACGGATCTTGCTTCCCCGG
* * **
56635761 TAGTTAAAAATATTGAAGCTACAACAACGGATCTTACTTTCCTAGTGTTGCAGTAGAACAGATTG
131 CAGTTAAAAAGATTGAAGCTACAACAACGGATCTTACTTTCCTAGCATTGCAGTAGAACAGATTG
56635826 AAGCTACAACAGC
196 AAGCTACAACAGC
* *
56635839 GATTGAAGCTACAACAGCGGATCTTGCTTCCCCGGCAGTTAAAAAGATTGAAGCTACAATAGCGG
1 GATTGAAGCTACAACAGCGGATCTTGCTTCCCCGGCAGTTAAAAAGATTGAAGCTACAACAGCGA
* *
56635904 ATCTTACTTTCCTAGCGTTGCAGT-GAAACAGATTGAAGCTACAGCAACGGATCTTGCTTCCCTG
66 ATCTTACTTTCCTAGCATTGCAGTAG-AACAGATTGAAGCTACAGCAACGGATCTTGCTTCCCCG
* * *
56635968 GCAGTTAAAAAGATTGAAGCTGCTACAGCGGATCTTACTTTCCTAGCATTGCAGT
130 GCAGTTAAAAAGATTGAAGCTACAACAACGGATCTTACTTTCCTAGCATTGCAGT
56636023 GGAATAGAAT
Statistics
Matches: 170, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
207 1 0.01
208 169 0.99
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (208 bp):
GATTGAAGCTACAACAGCGGATCTTGCTTCCCCGGCAGTTAAAAAGATTGAAGCTACAACAGCGA
ATCTTACTTTCCTAGCATTGCAGTAGAACAGATTGAAGCTACAGCAACGGATCTTGCTTCCCCGG
CAGTTAAAAAGATTGAAGCTACAACAACGGATCTTACTTTCCTAGCATTGCAGTAGAACAGATTG
AAGCTACAACAGC
Found at i:56636152 original size:654 final size:643
Alignment explanation
Indices: 56634547--56636037 Score: 2051
Period size: 654 Copynumber: 2.3 Consensus size: 643
56634537 TAGTGAAACA
* ** * * *
56634547 GATTGAAGCTACAGCAGTAGATCTTGCTTCCCCGGTAATTAAAAATATTGAAGCTACAACAGCGG
1 GATTGAAGCTACAACAGCGGATCTTGCTTCCCCGGCAGTTAAAAAGATTGAAGCTACAACAGCGG
* * * * *
56634612 ATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTGCTTCCCCGG
66 ATCTTACTTTCCTAGCGTTGCAGTGAAACAGATTGAAGCTACAGCAACGGATCTTGCTTCCCTGG
* * * * * *
56634677 CAGTTAAAAAGATTGAAGCTACAACAGCGGATCTTATTTTCCTAGCGTTGCAGTGAAACGGATTG
131 CAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCATTGCAGTGAAACAGAATA
* ** * * ** * *
56634742 AAGCTACAGCAA-CAGATCTTGCTTCCCTTGCAATT-AA----AA-AGATTGAAGCTACAACAGC
196 AAAC-ACAG-AAGCCCATCTTACTTTCCAAGC-ATTAAAGTCGAACAGATTAAAGGTAC-ACAGC
* * ** * * * * *
56634800 GGATCTTACTTTCCTAGCGTTACAGTGAAATAGATTGAAGCTACAGCAGCGGATCTTACTTTCCT
257 AGATC-TGC-TGAC-A-AG--ACAGTGAAAAAGATTAAAGCTACAACAACGGATCTTACTTTCCT
56634865 AGCATTGCAGTGGAACAGATTGAAGCTACAGCAGCAGATCTTGCTTCCCCGACAGTTAAAAAGAT
316 AGCATTGCAGTGGAACAGATTGAAGCTACAGCAGCAGATCTTGCTTCCCCGACAGTTAAAAAGAT
*
56634930 TGAAGCTACAACAACGGATCTTACTTTCCTAGTGTTGCAGTGGAACAAATTGAAGCTACAACAGC
381 TGAAGCTACAACAACGGATCTTACTTTCCTAGTGTTGCAGTGAAACAAATTGAAGCTACAACAGC
56634995 GGATCTTGCTTCCCTGGCAGTTAAAAAGATTGAAGCTACAACAGCGAATCTTACTTTCCTAGCAT
446 GGATCTTGCTTCCCTGGCAGTTAAAAAGATTGAAGCTACAACAGCGAATCTTACTTTCCTAGCAT
*
56635060 TGCAGTAGAACAGATTGAAGCTACAGCAGCGGATCTTGCTTCCCTAGTAGTTAAAAAGATTGAAG
511 TGCAGTAGAACAGATTGAAGCTACAGCAGCGGATCTTGCTTCCCCAGTAGTTAAAAAGATTGAAG
*
56635125 CTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTACAACAGCGATTG
576 CTACAACAACGGATCTTACTTTCCTAGTGTT---GTGG-ACAGA-T-AAG---CAACA-CGATTG
56635190 AAGCTACAACAGC
631 AAGCTACAACAGC
* *
56635203 GATTGAAGCTACAACAGCGGATTTTGCTTCCCCGGCAGTTAAAAAGATTGAAGCTACAGCAGCGG
1 GATTGAAGCTACAACAGCGGATCTTGCTTCCCCGGCAGTTAAAAAGATTGAAGCTACAACAGCGG
* *
56635268 ATCTTACTTTCCTAGCGTTGCAGTGAAACAGATTGAAGCTACAGCAACGGATCTTTCTTCCCTTG
66 ATCTTACTTTCCTAGCGTTGCAGTGAAACAGATTGAAGCTACAGCAACGGATCTTGCTTCCCTGG
* * *
56635333 CAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGATTG
131 CAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCATTGCAGTGAAACAGAATA
* * ** * * * *
56635398 AAGCTACAGCAGCGGATCTTACTTTCCTAGCATTACAGTGGAACAGATTGAAGGTACACAGCAGA
196 AAAC-ACAGAAGCCCATCTTACTTTCCAAGCATTAAAGTCGAACAGATTAAAGGTACACAGCAGA
** ** * *
56635463 TCTTGCTTCCCCGACAGTTAAAAAGATTGAAGCTACAACAACGGATCTTACTTTCCTAGCATTGC
260 TC-TGCTGACAAGACAGTGAAAAAGATTAAAGCTACAACAACGGATCTTACTTTCCTAGCATTGC
56635528 AGTGGAACAGATTGAAGCTACA-CAGCAGATCTTGCTTCCCCGACAGTTAAAAAGATTGAAGCTA
324 AGTGGAACAGATTGAAGCTACAGCAGCAGATCTTGCTTCCCCGACAGTTAAAAAGATTGAAGCTA
* *
56635592 CAACAACGGATCTTACTTTTCTAGTGTTGCAGTGAAACAGATTGAAGCTACAACAGCGGATCTTG
389 CAACAACGGATCTTACTTTCCTAGTGTTGCAGTGAAACAAATTGAAGCTACAACAGCGGATCTTG
56635657 CTTCCCTGGCAGTTAAAAAGATTGAAGCTACAACAGCGAATCTTACTTTCCTAGCATTGCAGTAG
454 CTTCCCTGGCAGTTAAAAAGATTGAAGCTACAACAGCGAATCTTACTTTCCTAGCATTGCAGTAG
* *
56635722 AACAGATTGAAGCTACAGCAGCGGATCTTGCTTCCCCGGTAGTTAAAAATATTGAAGCTACAACA
519 AACAGATTGAAGCTACAGCAGCGGATCTTGCTTCCCCAGTAGTTAAAAAGATTGAAGCTACAACA
56635787 ACGGATCTTACTTTCCTAGTG-T-T-G-CAG-T-AG-AACA-GATTGAAGCTACAACAGC
584 ACGGATCTTACTTTCCTAGTGTTGTGGACAGATAAGCAACACGATTGAAGCTACAACAGC
*
56635839 GATTGAAGCTACAACAGCGGATCTTGCTTCCCCGGCAGTTAAAAAGATTGAAGCTACAATAGCGG
1 GATTGAAGCTACAACAGCGGATCTTGCTTCCCCGGCAGTTAAAAAGATTGAAGCTACAACAGCGG
56635904 ATCTTACTTTCCTAGCGTTGCAGTGAAACAGATTGAAGCTACAGCAACGGATCTTGCTTCCCTGG
66 ATCTTACTTTCCTAGCGTTGCAGTGAAACAGATTGAAGCTACAGCAACGGATCTTGCTTCCCTGG
* * * * *
56635969 CAGTTAAAAAGATTGAAGCTGCTACAGCGGATCTTACTTTCCTAGCATTGCAGTGGAATAGAATA
131 CAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCATTGCAGTGAAACAGAATA
56636034 AAAC
196 AAAC
56636038 CATGAATCCC
Statistics
Matches: 775, Mismatches: 53, Indels: 34
0.90 0.06 0.04
Matches are distributed among these distances:
636 203 0.26
638 4 0.01
642 2 0.00
644 1 0.00
646 3 0.00
648 1 0.00
649 1 0.00
653 1 0.00
654 251 0.32
655 74 0.10
656 202 0.26
657 2 0.00
659 4 0.01
660 14 0.02
661 12 0.02
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.26
Consensus pattern (643 bp):
GATTGAAGCTACAACAGCGGATCTTGCTTCCCCGGCAGTTAAAAAGATTGAAGCTACAACAGCGG
ATCTTACTTTCCTAGCGTTGCAGTGAAACAGATTGAAGCTACAGCAACGGATCTTGCTTCCCTGG
CAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCATTGCAGTGAAACAGAATA
AAACACAGAAGCCCATCTTACTTTCCAAGCATTAAAGTCGAACAGATTAAAGGTACACAGCAGAT
CTGCTGACAAGACAGTGAAAAAGATTAAAGCTACAACAACGGATCTTACTTTCCTAGCATTGCAG
TGGAACAGATTGAAGCTACAGCAGCAGATCTTGCTTCCCCGACAGTTAAAAAGATTGAAGCTACA
ACAACGGATCTTACTTTCCTAGTGTTGCAGTGAAACAAATTGAAGCTACAACAGCGGATCTTGCT
TCCCTGGCAGTTAAAAAGATTGAAGCTACAACAGCGAATCTTACTTTCCTAGCATTGCAGTAGAA
CAGATTGAAGCTACAGCAGCGGATCTTGCTTCCCCAGTAGTTAAAAAGATTGAAGCTACAACAAC
GGATCTTACTTTCCTAGTGTTGTGGACAGATAAGCAACACGATTGAAGCTACAACAGC
Found at i:56637497 original size:3 final size:3
Alignment explanation
Indices: 56637481--56637548 Score: 68
Period size: 3 Copynumber: 22.0 Consensus size: 3
56637471 TTAGTAATTC
56637481 TAT TATT TAGT TAT TAT TAT TAT CT-T TAT TAT TAT TAT TA- TATT TAT
1 TAT TA-T TA-T TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TA-T TAT
* *
56637528 TAA TAT TAT TGT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT
56637549 GTTTTTATAT
Statistics
Matches: 55, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
2 3 0.05
3 43 0.78
4 9 0.16
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:56637509 original size:9 final size:8
Alignment explanation
Indices: 56637467--56637566 Score: 51
Period size: 9 Copynumber: 11.4 Consensus size: 8
56637457 ATTTAATCCA
56637467 TATTTTAGT
1 TATTTTA-T
* *
56637476 AATTCTAT
1 TATTTTAT
56637484 TA-TTTAGT
1 TATTTTA-T
56637492 TATTATTAT
1 TATT-TTAT
56637501 TATCTTTAT
1 TAT-TTTAT
56637510 TATTATTAT
1 TATT-TTAT
56637519 TATATTTAT
1 TAT-TTTAT
*
56637528 TAATATTAT
1 T-ATTTTAT
*
56637537 TGTTATTAT
1 TATT-TTAT
56637546 TATGTTT-T
1 TAT-TTTAT
56637554 TATATTTACT
1 TAT-TTTA-T
56637564 TAT
1 TAT
56637567 GCAAATTTTA
Statistics
Matches: 71, Mismatches: 9, Indels: 21
0.70 0.09 0.21
Matches are distributed among these distances:
7 3 0.04
8 14 0.20
9 42 0.59
10 12 0.17
ACGTcount: A:0.29, C:0.03, G:0.04, T:0.64
Consensus pattern (8 bp):
TATTTTAT
Found at i:56637514 original size:18 final size:18
Alignment explanation
Indices: 56637484--56637566 Score: 82
Period size: 18 Copynumber: 4.6 Consensus size: 18
56637474 GTAATTCTAT
56637484 TATTTAGTTATTATTATTA
1 TATTTA-TTATTATTATTA
*
56637503 TCTTTATTATTATTATTA
1 TATTTATTATTATTATTA
* *
56637521 TATTTATTAATATTATTG
1 TATTTATTATTATTATTA
56637539 T-TATTATTATGT-TT-TTA
1 TAT-TTATTAT-TATTATTA
56637556 TATTTACTTAT
1 TATTTA-TTAT
56637567 GCAAATTTTA
Statistics
Matches: 54, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
17 7 0.13
18 41 0.76
19 6 0.11
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (18 bp):
TATTTATTATTATTATTA
Found at i:56649183 original size:15 final size:15
Alignment explanation
Indices: 56649132--56649184 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 15
56649122 TAAAATATAT
56649132 ATTTATATTATTTTTA
1 ATTTATA-TATTTTTA
*
56649148 ATTTA-ATATTTAATA
1 ATTTATATATTT-TTA
*
56649163 ACTTTATATATTTTTT
1 A-TTTATATATTTTTA
56649179 ATTTAT
1 ATTTAT
56649185 TAAAATTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
14 5 0.16
15 9 0.29
16 11 0.35
17 6 0.19
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (15 bp):
ATTTATATATTTTTA
Done.