Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 196 of 207
Found at i:58958049 original size:130 final size:129
Alignment explanation
Indices: 58957836--58958077 Score: 317
Period size: 130 Copynumber: 1.9 Consensus size: 129
58957826 TATTTTCAAC
* ** *
58957836 CTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGATGCGATCTGCTCTACTGCAACGTTAGAGAG
1 CTGCTCCACTGCAACTTCAAGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACGTTAGAGAG
** *
58957901 ATAAGATCTATGGTTTTAATCCGCTTCACTGCAACTTCAGGAAGATAGGATTGATTTCTTTCGT
66 ATAAGATCTATGACTTTAATCCGCTCCACTGCAACTTCAGGAAGATAGGATTGATTTCTTTCGT
* *
58957965 CTGCTCCACTGTAACTTCAAGGAGACTTAGACTGGATGC-ATTCTGCTCTACTGCAAC-TTCAGA
1 CTGCTCCACTGCAACTTCAAGGAGA-TAAGACTGGATGCGA-TCTGCTCTACTGCAACGTT-AGA
* * * * *
58958028 GAGATAAGATCTATTACTTTAATTCGCTCCTCTTCAACTTCAGGGAGATA
63 GAGATAAGATCTATGACTTTAATCCGCTCCACTGCAACTTCAGGAAGATA
58958078 AAATTTGCCA
Statistics
Matches: 96, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
129 26 0.27
130 70 0.73
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.31
Consensus pattern (129 bp):
CTGCTCCACTGCAACTTCAAGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACGTTAGAGAG
ATAAGATCTATGACTTTAATCCGCTCCACTGCAACTTCAGGAAGATAGGATTGATTTCTTTCGT
Found at i:58958123 original size:89 final size:84
Alignment explanation
Indices: 58958014--58958256 Score: 229
Period size: 85 Copynumber: 2.8 Consensus size: 84
58958004 ATTCTGCTCT
*
58958014 ACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATTCGCTCCTCTTCAACTTCAGGGAGATAA
1 ACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATTCGCT-CTCTACAACTTCAGGGAGATAA
* **
58958079 AATTTGCCATCTTCGATCTGCCCC
65 AATTTG--A--TGCGATCCACCCC
* * * * * * *
58958103 ACTGCAACTTCAGGGGGATAAAACCTGTTTAC--TCAGTCTGCTCTACTACAACTTCAGGGAGAT
1 ACTGCAACTTCAGAGAGATAAGATCT-ATTACTTTAATTC-GCTCT-CTACAACTTCAGGGAGAT
* * * *
58958166 AAGACTTGATGCGATCCACTCT
63 AAAATTTGATGCGATCCACCCC
* * *
58958188 ACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATTCACTTCTCTGCAACTTCAGGGAGATAG
1 ACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATTCGC-TCTCTACAACTTCAGGGAGATAA
58958253 AATT
65 AATT
58958257 ATCGGCTTCA
Statistics
Matches: 121, Mismatches: 27, Indels: 16
0.74 0.16 0.10
Matches are distributed among these distances:
84 4 0.03
85 51 0.42
86 7 0.06
87 1 0.01
88 6 0.05
89 48 0.40
90 4 0.03
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (84 bp):
ACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATTCGCTCTCTACAACTTCAGGGAGATAAA
ATTTGATGCGATCCACCCC
Found at i:58958693 original size:46 final size:46
Alignment explanation
Indices: 58958635--58961184 Score: 3618
Period size: 46 Copynumber: 55.4 Consensus size: 46
58958625 GCTGTCAATG
* * * *
58958635 CAGGAAGGCAAGATTTGCTTTTTTCGATCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
*
58958681 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTTCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
58958727 CAGG-AGAACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
1 CAGGAAG-ACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* *
58958773 CAGGAGGACAAGATCTGCTATCTTCGATCCCCTTCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
*
58958819 CAGGAAGACAAGATCTGCTATCTTCGATCTCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
58958865 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * *
58958911 CAGAAAGATAAGATCTGCTATCTTTGATCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * *
58958957 CAGGAAGACAAGATCTACTATTTTCGATCCCATCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * ** ** * *
58959003 CAAGAAGACAAGATCTGCTTTCTTTTATCTACTCTGCTGCCTAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * * * *
58959049 CAGGAAGATAAGATTTACTTTTTTCGATCTCCC-CCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATC-CCCTCCGCTGCCAAATA
* * * * *
58959095 TAGGAAGACAAGATCTACTATCTTTGATCTCCTCCACTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * * * *
58959141 CAAGAAGACAAGATCTACTATCTTCGATCCCCCCCACTGCAAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * *
58959187 CAGGAAGACAAGATCTGCTTTCTTTGGTCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* *
58959233 CAGGAAGACAAGATCTCTGCTATCTTTGATCCCCTCCGCTGCCAACTA
1 CAGGAAGACAAGA--TCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* *
58959281 CAGGAAGACAAGATCTGCTATCTTTGATCCCCTCTGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* *
58959327 CAGGAAGACAAGATCTGCTATCTTCGATCCCATTCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * * * *
58959373 CAGGAAAACAAGATCTGCTATCTTAGATACCCTCCGCTGTCAAATG
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
*
58959419 CAGGAAGACAAGATCTGCTATCTTCGATCCCTTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
58959465 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
**
58959511 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCTACTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * *
58959557 CAGGAAGACAAGATCTGCTATATTTGACCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * *
58959603 TAGGAAGACAAGATCTTCTATCTTCGATCCCCTCTGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
58959649 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* ** *
58959695 TAGGAAGACAAGATCTGCTATCTTCGATCCCCTCTACTACCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* *
58959741 CAGGAAGACAAGATCTGCTTTCTTCGATCCCCTCCGCTACCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * ** **
58959787 CAAGAAGACAAGATCTGTTATCTTCGATCTACTCTACTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* *
58959833 CAGGAAGACAAAATCTGCTATCTTCGATCCCCTCTGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * * * * ** *
58959879 TAGGAAGACAATATATGCTTTCTTTGATCTACTCCGCTGCCTAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * * * * *
58959925 CAAGAAGATAAGATCTGCTTTCTTCGATCTCCTCTGTTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * **
58959971 TAGAAAGACAAGATCTGCTATCTTCGATCCCCTCTACTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* *
58960017 CAGGAAGACAAGATCTGCTATATTCGATCCCCTCTGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
*
58960063 CAGGAAGACAAGATCTTCTATCTTCGATCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * *
58960109 CAGGAAGACAAGATCTGCTATATTCGATCCCCTCTGCTACCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * * * *
58960155 CAAG-AGACAAGATCTACTTTCTTCGATCCTCTCTGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
** *
58960200 CAGGAAGACAAGATCTGCTATCTTCGATCTACTCCACTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
58960246 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * ** *
58960292 CAGGAAGACAATATCTGC-ATTCTTTGATCTACTCCGCTGCCTAATA
1 CAGGAAGACAAGATCTGCTA-TCTTCGATCCCCTCCGCTGCCAAATA
* * * * *
58960338 CAGGAAGATAAGATCTGCTTTCTTCAATCTCCTCCGTTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * * * *
58960384 TAGAAAGACAAGATCTGCTATCTTTGATCTCCTCCACTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* *
58960430 TAGGAAGACAATATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* *
58960476 CAGGAAGACAAAATCTACTATCTTCGATCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* *
58960522 AAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTACCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
*
58960568 CAGGAAAACATA-ATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
1 CAGGAAGACA-AGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * * *
58960614 TAGGAAGACAATATCTGCTATATTCGAT-CCCTCCGCTGCCAAATG
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* *
58960659 TAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAGATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
*
58960705 CAGGAAGACAAGATCTGCTATATTCGATCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* *
58960751 CAGGAAGACAAGATCTGCTATCTTCGATCCCTTTCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
*
58960797 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCACTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
*
58960843 CAGGAAGACAAGATCTGCTATCTTCGATCCCTTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * *
58960889 CAGGAATACAAGATCTTCTATCTTCGATCCCCTCTGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
58960935 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* *
58960981 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCTGCTACCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * * * *
58961027 CAGGAATACAATATCTGCTTTCTTTGATCCCCTCCGCTGTCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * ** *
58961073 TAGGAAGACAAGATCTGCTATGTTCGATCTACTCCACTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
58961119 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
58961165 CAGGAAGACAAGATCTGCTA
1 CAGGAAGACAAGATCTGCTA
58961185 CTTTTAGTCC
Statistics
Matches: 2226, Mismatches: 266, Indels: 24
0.88 0.11 0.01
Matches are distributed among these distances:
45 87 0.04
46 2093 0.94
47 3 0.00
48 43 0.02
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (46 bp):
CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
Found at i:58962238 original size:96 final size:97
Alignment explanation
Indices: 58962071--58962357 Score: 398
Period size: 96 Copynumber: 3.0 Consensus size: 97
58962061 GAAAAATGCT
* * * *
58962071 TGAAAAAGATTATTACAATGGACAAGATGAAATTTTATTGAGAACAAGGCTCGAGATGAATAAAT
1 TGAAAAAGATTATCACAATGGATAAGAAGAAATTTTATTGAGAACAAGGCTCGAAATGAATAAAT
* *
58962136 TAATCAAGATAGAAAATTTTGCTAAGATATGA
66 TAATCAAGATAGCAAATTTTGCTAAGATAAGA
* * *
58962168 TG-AAAAGATTATCACAATGGATAAGAAGAAATTTTATTAAGAACAAAGCTCAAAATGAATAAAT
1 TGAAAAAGATTATCACAATGGATAAGAAGAAATTTTATTGAGAACAAGGCTCGAAATGAATAAAT
**
58962232 TAATCAAGATAGCAAATTTCACTAAGATAAGA
66 TAATCAAGATAGCAAATTTTGCTAAGATAAGA
* ** * *
58962264 TGAAAAAGATTATCACAATGGATAA-AATGAAAATTTATTGAGGGCACGGCTCGAAGTGAATAAA
1 TGAAAAAGATTATCACAATGGATAAGAA-GAAATTTTATTGAGAACAAGGCTCGAAATGAATAAA
*
58962328 TTAATCAAGATAGCAAATTTTGCTAGGATA
65 TTAATCAAGATAGCAAATTTTGCTAAGATA
58962358 CGAAATGAAT
Statistics
Matches: 166, Mismatches: 22, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
96 87 0.52
97 79 0.48
ACGTcount: A:0.47, C:0.09, G:0.17, T:0.26
Consensus pattern (97 bp):
TGAAAAAGATTATCACAATGGATAAGAAGAAATTTTATTGAGAACAAGGCTCGAAATGAATAAAT
TAATCAAGATAGCAAATTTTGCTAAGATAAGA
Found at i:58962653 original size:8 final size:8
Alignment explanation
Indices: 58962640--58962691 Score: 61
Period size: 8 Copynumber: 6.6 Consensus size: 8
58962630 TGGCCTCTCC
58962640 TTTTTCTT
1 TTTTTCTT
58962648 TTTTTCTT
1 TTTTTCTT
*
58962656 CTTTTCTT
1 TTTTTCTT
*
58962664 CTTTT-TT
1 TTTTTCTT
* *
58962671 CTATTCTT
1 TTTTTCTT
58962679 TTTTTCTT
1 TTTTTCTT
58962687 TTTTT
1 TTTTT
58962692 GTTTGTTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
7 6 0.15
8 33 0.85
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (8 bp):
TTTTTCTT
Found at i:58962700 original size:20 final size:19
Alignment explanation
Indices: 58962640--58962707 Score: 82
Period size: 20 Copynumber: 3.5 Consensus size: 19
58962630 TGGCCTCTCC
*
58962640 TTTTTCTTTTTTTCTTCTT
1 TTTTTCTTTTTTTATTCTT
*
58962659 TTCTTCTTTTTTCTATTCTT
1 TTTTTCTTTTTT-TATTCTT
* *
58962679 TTTTTCTTTTTTTGTTTGTT
1 TTTTTCTTTTTTT-ATTCTT
58962699 TTTTTCTTT
1 TTTTTCTTT
58962708 GAACATTCTT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
19 12 0.29
20 30 0.71
ACGTcount: A:0.01, C:0.13, G:0.03, T:0.82
Consensus pattern (19 bp):
TTTTTCTTTTTTTATTCTT
Found at i:58963108 original size:13 final size:13
Alignment explanation
Indices: 58963090--58963114 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
58963080 CTTTTTGTTT
58963090 TTTTTTGTTTTTA
1 TTTTTTGTTTTTA
58963103 TTTTTTGTTTTT
1 TTTTTTGTTTTT
58963115 TTTGCTCCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.00, G:0.08, T:0.88
Consensus pattern (13 bp):
TTTTTTGTTTTTA
Found at i:58967310 original size:16 final size:16
Alignment explanation
Indices: 58967291--58967325 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
58967281 ATATGTAGGT
*
58967291 ATATAAAAATTATAAA
1 ATATAAAAATAATAAA
*
58967307 ATATGAAAATAATAAA
1 ATATAAAAATAATAAA
58967323 ATA
1 ATA
58967326 CATATAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.29
Consensus pattern (16 bp):
ATATAAAAATAATAAA
Found at i:58969180 original size:41 final size:41
Alignment explanation
Indices: 58969081--58969539 Score: 162
Period size: 44 Copynumber: 10.7 Consensus size: 41
58969071 CTGGTTTTAG
* * * * * *
58969081 TCTGCTCCACTACAACGTCAGGGAGATAAGACTTGTATTTTCAA
1 TCTGCTCTACTGCAACTTCAGGGAGATAAGATTTG-A--TGCGA
* * *
58969125 CCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGATGCGA
1 TCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGATGCGA
*
58969166 TCTGCTCTACTGCAACGTT-AGAGAGATAAGATTTG-TG-GTTTTAA
1 TCTGCTCTACTGCAAC-TTCAGGGAGATAAGATTTGATGCG-----A
* * ** *
58969210 TCCGCT-TCACTGCAACTTCAGGAAGATAGGATTGATTTCTTTCG-
1 TCTGCTCT-ACTGCAACTTCAGGGAGATA--A--GATTTGATGCGA
* * * * *
58969254 TCTGCTCCACTGTAACTTCAGGGAGATAAGACTGGATGCAA
1 TCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGATGCGA
* * ***
58969295 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAA
1 TCTGCTCTACTGCAACTTCAGGGAGATAAGAT-T-TGA-TGCGA
* * * *
58969339 T-TCGCTCCT-CTTCAACTTCAGGGAGATAAAATTTTCCATCTTCGA
1 TCT-GCT-CTACTGCAACTTCAGGGAGATAAGA-TTT-GA--TGCGA
* * * ** * * *
58969384 TCTGCCCCACTGCAACTTCAGGGGGATAAGACCTGCTTACTCA
1 TCTGCTCTACTGCAACTTCAGGGAGATAAGATTTG-ATGC-GA
* * *
58969427 GTCTGCTCCACTACAACTTCA-GGAGATAAGACTTGATGCGA
1 -TCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGATGCGA
** * * ***
58969468 TCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAA
1 TCTGCTCTACTGCAACTTCAGGGAGATAAGAT-T-TGA-TGCGA
58969512 TCTGCTTCT-CTGCAACTTCAGGGAGATA
1 TCTGC-TCTACTGCAACTTCAGGGAGATA
58969540 GAATTATCGG
Statistics
Matches: 310, Mismatches: 71, Indels: 68
0.69 0.16 0.15
Matches are distributed among these distances:
39 1 0.00
40 23 0.07
41 69 0.22
42 9 0.03
43 22 0.07
44 145 0.47
45 32 0.10
46 2 0.01
48 5 0.02
49 1 0.00
50 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (41 bp):
TCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGATGCGA
Found at i:58969221 original size:85 final size:84
Alignment explanation
Indices: 58969081--58969245 Score: 208
Period size: 85 Copynumber: 2.0 Consensus size: 84
58969071 CTGGTTTTAG
*
58969081 TCTGCTCCACTACAACGTCAGGGAGATAAGACTTGTATTTTCAACCTGCTCCACTGCAACTTCAG
1 TCTGCTCCACTACAACGTCAGAGAGATAAGACTTGTATTTTCAACCTGCTCCACTGCAACTTCAG
* *
58969146 GGAGATAAGGTTTGATGCGA
66 GAAGAT-AGGATTGATGCGA
* * * * * *
58969166 TCTGCTCTACTGCAACGTTAGAGAGATAAGATTTGTGGTTTT-AATCC-GCTTCACTGCAACTTC
1 TCTGCTCCACTACAACGTCAGAGAGATAAGACTTGT-ATTTTCAA-CCTGCTCCACTGCAACTTC
58969229 AGGAAGATAGGATTGAT
64 AGGAAGATAGGATTGAT
58969246 TTCTTTCGTC
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
84 8 0.12
85 55 0.80
86 6 0.09
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (84 bp):
TCTGCTCCACTACAACGTCAGAGAGATAAGACTTGTATTTTCAACCTGCTCCACTGCAACTTCAG
GAAGATAGGATTGATGCGA
Found at i:58969338 original size:129 final size:130
Alignment explanation
Indices: 58969126--58969415 Score: 345
Period size: 129 Copynumber: 2.2 Consensus size: 130
58969116 TATTTTCAAC
** * *
58969126 CTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGATGCGATCTGCTCTACTGCAACGTTAGAGAG
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCAATCTGCTCTACTGCAACGTTAGAGAG
* * ** * ** *
58969191 ATAAGATTTGTGGTTTTAATCCGCTTCACTGCAACTTCAGGAAGATAGGATTGATTTC-T-TTCG
66 ATAAGATCTATGACTTTAATCCGCTCCACTGCAACTTCAGGAAGATAAAATT--TTCCATCTTCG
58969254 -T
129 AT
*
58969255 CTGCTCCACTGTAACTTCAGGGAGATAAGACTGGATGCAATCTGCTCTACTGCAAC-TTCAGAGA
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCAATCTGCTCTACTGCAACGTT-AGAGA
* * * * *
58969319 GATAAGATCTATTACTTTAATTCGCTCCTCTTCAACTTCAGGGAGATAAAATTTTCCATCTTCGA
65 GATAAGATCTATGACTTTAATCCGCTCCACTGCAACTTCAGGAAGATAAAATTTTCCATCTTCGA
58969384 T
130 T
* *
58969385 CTGCCCCACTGCAACTTCAGGGGGATAAGAC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGAC
58969416 CTGCTTACTC
Statistics
Matches: 136, Mismatches: 21, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
127 3 0.02
128 3 0.02
129 101 0.74
130 29 0.21
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (130 bp):
CTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCAATCTGCTCTACTGCAACGTTAGAGAG
ATAAGATCTATGACTTTAATCCGCTCCACTGCAACTTCAGGAAGATAAAATTTTCCATCTTCGAT
Found at i:58969367 original size:173 final size:173
Alignment explanation
Indices: 58969208--58969544 Score: 446
Period size: 173 Copynumber: 1.9 Consensus size: 173
58969198 TTGTGGTTTT
** * * * **
58969208 AATCCGCTTCACTGCAACTTCAGGAAGATAGGA-TTGATTTCTTTC-GTCTGCTCCACTGTAACT
1 AATCCGCCCCACTGCAACTTCAGGAAGATAAGACCTGATTAC--TCAGTCTGCTCCACTACAACT
**
58969271 TCAGGGAGATAAGACTGGATGCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATTACTT
64 TCA-GGAGATAAGACTGGATGCAATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTT
*
58969336 TAAT-TCGCTCCTCTTCAACTTCAGGGAGATAAAATTTTCCATCTTC
128 TAATCT-GCTCCTCTGCAACTTCAGGGAGATAAAATTTTCCATCTTC
* * ** *
58969382 GATCTGCCCCACTGCAACTTCAGGGGGATAAGACCTGCTTACTCAGTCTGCTCCACTACAACTTC
1 AATCCGCCCCACTGCAACTTCAGGAAGATAAGACCTGATTACTCAGTCTGCTCCACTACAACTTC
* *
58969447 AGGAGATAAGACTTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAA
66 AGGAGATAAGACTGGATGCAATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAA
* *
58969512 TCTGCTTCTCTGCAACTTCAGGGAGATAGAATT
131 TCTGCTCCTCTGCAACTTCAGGGAGATAAAATT
58969545 ATCGGCTTCA
Statistics
Matches: 141, Mismatches: 19, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
173 90 0.64
174 46 0.33
175 5 0.04
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (173 bp):
AATCCGCCCCACTGCAACTTCAGGAAGATAAGACCTGATTACTCAGTCTGCTCCACTACAACTTC
AGGAGATAAGACTGGATGCAATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAA
TCTGCTCCTCTGCAACTTCAGGGAGATAAAATTTTCCATCTTC
Found at i:58969607 original size:173 final size:174
Alignment explanation
Indices: 58969254--58969611 Score: 422
Period size: 173 Copynumber: 2.1 Consensus size: 174
58969244 ATTTCTTTCG
** **
58969254 TCTGCTCCACTGTAACTTCAGGGAGATAAGACTGGATGCAATCTGCTCTACTGCAACTTCAGAGA
1 TCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGCAATCCACTCTACTGCAACTTCAGAGA
* * * *
58969319 GATAAGATCTATTACTTTAATTCGCTCCTCTTCAACTTCAGGGAGATAAAATTTTCCATCTTCGA
66 GATAAGATCTATTACTTTAATTCGCTCCTCTGCAACTTCAGGGAGATAAAATTATCCAGCTTCAA
* * * * *
58969384 TCTGCCCCACTGCAACTTCAGGGGGATAAGACCTGCTTACTCAG
131 TCTACCCCACTGCAACTACAGGGGGATAAAACCTGCATACTCAA
* *
58969428 TCTGCTCCACTACAACTTCA-GGAGATAAGACTTGATGCGATCCACTCTACTGCAACTTCAGAGA
1 TCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGCAATCCACTCTACTGCAACTTCAGAGA
* * *
58969492 GATAAGATCTATTACTTTAA-TCTGCTTCTCTGCAACTTCAGGGAGATAGAATTAT-CGGCTTCA
66 GATAAGATCTATTACTTTAATTC-GCTCCTCTGCAACTTCAGGGAGATAAAATTATCCAGCTTCA
* * * * *
58969555 ATGTACTCTACTGTAA-TCACAGGGAGG-TAAAATCTGCCAT-CTTCAA
130 ATCTACCCCACTGCAACT-ACAGGG-GGATAAAACCTG-CATAC-TCAA
58969601 TCTGCTCCACT
1 TCTGCTCCACT
58969612 TTTGGGAGAT
Statistics
Matches: 156, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
171 1 0.01
172 31 0.20
173 106 0.68
174 18 0.12
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (174 bp):
TCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGCAATCCACTCTACTGCAACTTCAGAGA
GATAAGATCTATTACTTTAATTCGCTCCTCTGCAACTTCAGGGAGATAAAATTATCCAGCTTCAA
TCTACCCCACTGCAACTACAGGGGGATAAAACCTGCATACTCAA
Found at i:58979493 original size:18 final size:17
Alignment explanation
Indices: 58979455--58979495 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
58979445 ATAAATGTTG
58979455 AATAAAACAATAATAAC
1 AATAAAACAATAATAAC
58979472 AATAATAACAATAATGAA-
1 AATAA-AACAATAAT-AAC
58979490 AATAAA
1 AATAAA
58979496 TAAAATTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 6 0.27
18 14 0.64
19 2 0.09
ACGTcount: A:0.71, C:0.07, G:0.02, T:0.20
Consensus pattern (17 bp):
AATAAAACAATAATAAC
Found at i:58979494 original size:9 final size:9
Alignment explanation
Indices: 58979455--58979486 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
58979445 ATAAATGTTG
58979455 AATAA-AAC
1 AATAATAAC
58979463 AATAATAAC
1 AATAATAAC
58979472 AATAATAAC
1 AATAATAAC
58979481 AATAAT
1 AATAAT
58979487 GAAAATAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 5 0.22
9 18 0.78
ACGTcount: A:0.69, C:0.09, G:0.00, T:0.22
Consensus pattern (9 bp):
AATAATAAC
Found at i:58986102 original size:23 final size:23
Alignment explanation
Indices: 58986056--58986104 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
58986046 TTTATAATCA
*
58986056 AGTTTTTTTTTAAATTCACCTTT
1 AGTTTTTTTTTAAATTCACATTT
*
58986079 AGTTTATTTTTTAATTTCA-ATTT
1 AGTTT-TTTTTTAAATTCACATTT
58986102 AGT
1 AGT
58986105 CCCTATAGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 11 0.48
24 12 0.52
ACGTcount: A:0.24, C:0.08, G:0.06, T:0.61
Consensus pattern (23 bp):
AGTTTTTTTTTAAATTCACATTT
Found at i:58986327 original size:24 final size:25
Alignment explanation
Indices: 58986278--58986331 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
58986268 AATTTTAATA
** *
58986278 ATGTAATTATTTTTTATTTTTTTAT
1 ATGTAATTATTTTTTATTAATCTAT
58986303 ATGTAATTATTTTTTA-TAATCTAT
1 ATGTAATTATTTTTTATTAATCTAT
58986327 ATGTA
1 ATGTA
58986332 TATATTTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 10 0.38
25 16 0.62
ACGTcount: A:0.30, C:0.02, G:0.06, T:0.63
Consensus pattern (25 bp):
ATGTAATTATTTTTTATTAATCTAT
Found at i:58989877 original size:108 final size:105
Alignment explanation
Indices: 58989678--58989883 Score: 313
Period size: 108 Copynumber: 1.9 Consensus size: 105
58989668 AAAATTCAAG
*
58989678 AGGATATTTGGCTATTTGGTTAAACGAGAAATCCAAACCCAACACATTAGGGCATGTTCCTCGAA
1 AGGATATTTGGCTATTTGGTTAAACGAGAAATCCAAACCCAACACATTAGGGCACGTTCCTCGAA
* *
58989743 TTTCCGAACGCGAAACATTGCCTTATTTTGAAATTTTGAA
66 TTTCCAAACGCGAAACATTGCCTTATTTAGAAATTTTGAA
* * *
58989783 AGGATATTTGGCTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTCCTC
1 AGGATATTTGGCTATTTGGTTAAACGAG--AAATCCAAACCCAACACATTAGGGCACG-TTCCTC
* *
58989848 GAATTTCCAAACGCTAAATATTGCCTTATTTAGAAA
63 GAATTTCCAAACGCGAAACATTGCCTTATTTAGAAA
58989884 AATCCTCATC
Statistics
Matches: 90, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
105 27 0.30
107 25 0.28
108 38 0.42
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (105 bp):
AGGATATTTGGCTATTTGGTTAAACGAGAAATCCAAACCCAACACATTAGGGCACGTTCCTCGAA
TTTCCAAACGCGAAACATTGCCTTATTTAGAAATTTTGAA
Found at i:58990553 original size:30 final size:31
Alignment explanation
Indices: 58990511--58990568 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
58990501 TATATGTATA
* *
58990511 TATATGAAAAAATATGTATGTACATATAAAG
1 TATATGAAAAAATAAGTAAGTACATATAAAG
*
58990542 TATAT-AAAAAATAAGTAAGTATATATA
1 TATATGAAAAAATAAGTAAGTACATATA
58990569 TATCAAAGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.55, C:0.02, G:0.10, T:0.33
Consensus pattern (31 bp):
TATATGAAAAAATAAGTAAGTACATATAAAG
Found at i:58992055 original size:3 final size:3
Alignment explanation
Indices: 58992047--58992080 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
58992037 TGGGTCTTAC
58992047 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
58992081 TGAATGGTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:58994878 original size:17 final size:18
Alignment explanation
Indices: 58994851--58994897 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
58994841 ATAAGTAAAT
*
58994851 AAACATGAAAAGAA-AAA
1 AAACATAAAAAGAAGAAA
*
58994868 AAACATAAAAATAAGAAA
1 AAACATAAAAAGAAGAAA
*
58994886 AATAAATAAAAA
1 AA-ACATAAAAA
58994898 TATATGTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 12 0.48
18 5 0.20
19 8 0.32
ACGTcount: A:0.79, C:0.04, G:0.06, T:0.11
Consensus pattern (18 bp):
AAACATAAAAAGAAGAAA
Found at i:58994894 original size:19 final size:20
Alignment explanation
Indices: 58994860--58994899 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
58994850 TAAACATGAA
58994860 AAGAAAAAAAACATAAAAAT
1 AAGAAAAAAAACATAAAAAT
*
58994880 AAGAAAAATAA-ATAAAAAT
1 AAGAAAAAAAACATAAAAAT
58994899 A
1 A
58994900 TATGTATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.80, C:0.03, G:0.05, T:0.12
Consensus pattern (20 bp):
AAGAAAAAAAACATAAAAAT
Found at i:58994924 original size:3 final size:3
Alignment explanation
Indices: 58994918--58995038 Score: 64
Period size: 3 Copynumber: 40.7 Consensus size: 3
58994908 TAATAATGGC
* * * * * * *
58994918 AAT AAT AAT ATT AAT AGT ATT AAT AAT AAG AAA AAA AAT AA- AAT AAG
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * ** * ** *
58994965 AAA AAT AGT AAT AAC ATT AAT AAT AAT TCT AAT AAC AAT GTT AAA AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
**
58995013 AGC AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
58995039 AAGTAACAAT
Statistics
Matches: 84, Mismatches: 33, Indels: 2
0.71 0.28 0.02
Matches are distributed among these distances:
2 2 0.02
3 82 0.98
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:58996224 original size:97 final size:98
Alignment explanation
Indices: 58996090--58996282 Score: 370
Period size: 98 Copynumber: 2.0 Consensus size: 98
58996080 CAAGGTGCGG
58996090 CGCACCTAGGGTTTGACTTGTTCTCCTTC-TTTTTTTTTCTGATTTGATGCTTTGGGCTGATGTT
1 CGCACCTAGGGTTTGACTTGTTCTCCTTCTTTTTTTTTTCTGATTTGATGCTTTGGGCTGATGTT
58996154 TTAGGCTATTAGGGTTTGGGTAGTTGGGCTTAC
66 TTAGGCTATTAGGGTTTGGGTAGTTGGGCTTAC
*
58996187 CGCACCTAGGGTTTGACTTGTTCTCTTTCTTTTTTTTTTCTGATTTGATGCTTTGGGCTGATGTT
1 CGCACCTAGGGTTTGACTTGTTCTCCTTCTTTTTTTTTTCTGATTTGATGCTTTGGGCTGATGTT
58996252 TTAGGCTATTAGGGTTTGGGTAGTTGGGCTT
66 TTAGGCTATTAGGGTTTGGGTAGTTGGGCTT
58996283 GTACTTAGGC
Statistics
Matches: 94, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
97 28 0.30
98 66 0.70
ACGTcount: A:0.11, C:0.15, G:0.27, T:0.48
Consensus pattern (98 bp):
CGCACCTAGGGTTTGACTTGTTCTCCTTCTTTTTTTTTTCTGATTTGATGCTTTGGGCTGATGTT
TTAGGCTATTAGGGTTTGGGTAGTTGGGCTTAC
Found at i:58997246 original size:29 final size:29
Alignment explanation
Indices: 58997199--58997286 Score: 104
Period size: 29 Copynumber: 3.0 Consensus size: 29
58997189 GTGTGGTTTC
* * *
58997199 GTGGCCAAACGGGCATGTGCTGCACACGG
1 GTGGCCAAACGGGCGTGTGCCGCACACAG
* * *
58997228 GTGGCCACACGGGTGTGTGCCACACACAG
1 GTGGCCAAACGGGCGTGTGCCGCACACAG
* *
58997257 GTGGCCAGACGAGCGTGTGCCGCACACAG
1 GTGGCCAAACGGGCGTGTGCCGCACACAG
58997286 G
1 G
58997287 CAGTTCACAC
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 49 1.00
ACGTcount: A:0.20, C:0.30, G:0.38, T:0.12
Consensus pattern (29 bp):
GTGGCCAAACGGGCGTGTGCCGCACACAG
Found at i:58997602 original size:20 final size:20
Alignment explanation
Indices: 58997577--58997619 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
58997567 TGCAGCTTGT
*
58997577 ACATGGGTGTGTAAACCCCC
1 ACATGGGCGTGTAAACCCCC
* *
58997597 ACATGGGCGTGTAGACCTCC
1 ACATGGGCGTGTAAACCCCC
58997617 ACA
1 ACA
58997620 CGGCCTAGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.19
Consensus pattern (20 bp):
ACATGGGCGTGTAAACCCCC
Found at i:59005488 original size:166 final size:165
Alignment explanation
Indices: 59005196--59005549 Score: 417
Period size: 166 Copynumber: 2.1 Consensus size: 165
59005186 GGATACTGCA
* * * *
59005196 AACCATACTCACCAACATGAACACACAAAGCAAGCACTTGAAACATAAATCAAGATCAGTATTTA
1 AACCATACTCACCTAGATGAACACACAAAGCAAGCACTAGAAACATAAATCAAGACCAGTATTTA
* * ** * *
59005261 AGCTAGCAAGCAAAAATAATAATAAGACTTTACTTACTAGTAATAATAATGTCATCATAGGTAAA
66 AACTAGCAAGAAAAAATAATAATAAGACTCCACTTACCAGTAATAATAATGTCACCATAGGTAAA
* * * **
59005326 AGCTTAAGCTTTAATACAAGTATGCGACTACATTT
131 AGCCTAAGCTTTAATACAAGTATGCAACCACATCG
* * * *
59005361 AACCATACTCACCTAGATGAGCATACAATGCAAGCA-TAAGAAGCATAAATCAAGACGCCA-TAT
1 AACCATACTCACCTAGATGAACACACAAAGCAAGCACT-AGAAACATAAATCAAGA--CCAGTAT
* * ** *
59005424 TTAAACTAGTAATAAAAAATAATAATACTACTCCACTTACCAGTAAT-ATCAATGTTACCATAGG
63 TTAAACTAGCAAGAAAAAATAATAATAAGACTCCACTTACCAGTAATAAT-AATGTCACCATAGG
*
59005488 TAAAAGCCTAAGCTTTAATACTAGTATGCAACCACATCG
127 TAAAAGCCTAAGCTTTAATACAAGTATGCAACCACATCG
*
59005527 AACCATACTCACCTAGACGAACA
1 AACCATACTCACCTAGATGAACA
59005550 TGCATTTTTT
Statistics
Matches: 158, Mismatches: 27, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
164 1 0.01
165 48 0.30
166 107 0.68
167 2 0.01
ACGTcount: A:0.44, C:0.21, G:0.11, T:0.24
Consensus pattern (165 bp):
AACCATACTCACCTAGATGAACACACAAAGCAAGCACTAGAAACATAAATCAAGACCAGTATTTA
AACTAGCAAGAAAAAATAATAATAAGACTCCACTTACCAGTAATAATAATGTCACCATAGGTAAA
AGCCTAAGCTTTAATACAAGTATGCAACCACATCG
Found at i:59014661 original size:22 final size:22
Alignment explanation
Indices: 59014617--59014670 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 22
59014607 TATAAAAATT
*
59014617 TAAATTACTTTTATCATTCTAA
1 TAAATTAATTTTATCATTCTAA
* *
59014639 TTAATTAATTTTAATGATT-TAA
1 TAAATTAATTTT-ATCATTCTAA
59014661 TAATATTAAT
1 TAA-ATTAAT
59014671 AATATATTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 15 0.58
23 11 0.42
ACGTcount: A:0.41, C:0.06, G:0.02, T:0.52
Consensus pattern (22 bp):
TAAATTAATTTTATCATTCTAA
Found at i:59015505 original size:20 final size:19
Alignment explanation
Indices: 59015468--59015505 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
59015458 TTCTAAAATT
59015468 AAATTTATGATAAATTATA
1 AAATTTATGATAAATTATA
59015487 AAATTATAT-ATACAATTAT
1 AAATT-TATGATA-AATTAT
59015506 TATTTTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (19 bp):
AAATTTATGATAAATTATA
Found at i:59016624 original size:19 final size:19
Alignment explanation
Indices: 59016586--59016624 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
59016576 TTTAGGGTTT
*
59016586 TGCTTTTTGCTTCTGCCTC
1 TGCTTTTTGCTTCTGACTC
*
59016605 TGCTTTTTGCTTCTTACTC
1 TGCTTTTTGCTTCTGACTC
59016624 T
1 T
59016625 CAACCAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.03, C:0.28, G:0.13, T:0.56
Consensus pattern (19 bp):
TGCTTTTTGCTTCTGACTC
Found at i:59016857 original size:12 final size:12
Alignment explanation
Indices: 59016825--59016858 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
59016815 TGACGACGAG
*
59016825 GAAGATGACGAT
1 GAAGATGATGAT
*
59016837 GACGATGATGAT
1 GAAGATGATGAT
59016849 GAAGATGATG
1 GAAGATGATG
59016859 CCGAAGGTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.38, C:0.06, G:0.35, T:0.21
Consensus pattern (12 bp):
GAAGATGATGAT
Found at i:59024041 original size:6 final size:6
Alignment explanation
Indices: 59024025--59024063 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
59024015 AATTAATCGA
* * *
59024025 AGGGTT AGGGCT GGGGCT AGGGCT AGGGCT AGGGTT AGG
1 AGGGCT AGGGCT AGGGCT AGGGCT AGGGCT AGGGCT AGG
59024064 ATTGGGGCGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.15, C:0.10, G:0.54, T:0.21
Consensus pattern (6 bp):
AGGGCT
Found at i:59024587 original size:7 final size:7
Alignment explanation
Indices: 59024575--59024601 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
59024565 AACCATTGGT
59024575 GGCGGTG
1 GGCGGTG
59024582 GGCGGTG
1 GGCGGTG
59024589 GGCGGTG
1 GGCGGTG
59024596 GGCGGT
1 GGCGGT
59024602 TGGGTACGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.70, T:0.15
Consensus pattern (7 bp):
GGCGGTG
Found at i:59029721 original size:17 final size:17
Alignment explanation
Indices: 59029672--59029722 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 17
59029662 CAAATAATTT
59029672 TTTTTAGATATTTAT-A
1 TTTTTAGATATTTATAA
* * *
59029688 TTTTCA-A-AATCATAA
1 TTTTTAGATATTTATAA
59029703 TTTTTAGATATTTATAA
1 TTTTTAGATATTTATAA
59029720 TTT
1 TTT
59029723 CAAAATAGTA
Statistics
Matches: 26, Mismatches: 6, Indels: 5
0.70 0.16 0.14
Matches are distributed among these distances:
14 4 0.15
15 7 0.27
16 6 0.23
17 9 0.35
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (17 bp):
TTTTTAGATATTTATAA
Found at i:59032717 original size:41 final size:40
Alignment explanation
Indices: 59032667--59032763 Score: 106
Period size: 40 Copynumber: 2.4 Consensus size: 40
59032657 ATATATGAAT
* *
59032667 TTGAGCTATTGATTTTTACTAATAAATTTACATATAAATTGA
1 TTGAACTATTGATTTTTACTAA-AAACTTACATATAAATT-A
* **
59032709 -TGAACTATTGATTTTTGCTAAATGCTTACATATAAATTA
1 TTGAACTATTGATTTTTACTAAAAACTTACATATAAATTA
* *
59032748 TTGAATTGTTGATTTT
1 TTGAACTATTGATTTT
59032764 ATGTATAAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.02
40 27 0.57
41 19 0.40
ACGTcount: A:0.34, C:0.07, G:0.11, T:0.47
Consensus pattern (40 bp):
TTGAACTATTGATTTTTACTAAAAACTTACATATAAATTA
Found at i:59032998 original size:30 final size:30
Alignment explanation
Indices: 59032963--59033023 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
59032953 GCATTAAGCT
59032963 TTTGAATTATCAATTAATTACGATAAACTA
1 TTTGAATTATCAATTAATTACGATAAACTA
59032993 TTTGAATTATCAATTAATTACGATAAACTA
1 TTTGAATTATCAATTAATTACGATAAACTA
59033023 T
1 T
59033024 CTCCTCAATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.41
Consensus pattern (30 bp):
TTTGAATTATCAATTAATTACGATAAACTA
Found at i:59036550 original size:8 final size:8
Alignment explanation
Indices: 59036535--59036578 Score: 56
Period size: 8 Copynumber: 5.5 Consensus size: 8
59036525 GGAAGAACAT
59036535 GAAAAAAA
1 GAAAAAAA
59036543 -ATAAAAAA
1 GA-AAAAAA
59036551 GAAAAAAGA
1 GAAAAAA-A
59036560 GAAAAAAA
1 GAAAAAAA
59036568 G-AAAAAA
1 GAAAAAAA
59036575 GAAA
1 GAAA
59036579 TTAAAAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
7 8 0.25
8 15 0.47
9 9 0.28
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (8 bp):
GAAAAAAA
Found at i:59040266 original size:50 final size:50
Alignment explanation
Indices: 59040185--59040279 Score: 165
Period size: 50 Copynumber: 1.9 Consensus size: 50
59040175 TGGTCTGACT
*
59040185 ATTCATGCCAACCAAACATTCTCTAACAACATTAGATAAGAGAACTTACC
1 ATTCATGCCAACCAAACATGCTCTAACAACATTAGATAAGAGAACTTACC
59040235 ATTCATGCCAACCAAACATGCTCT-ACGAACATTAGATAAGAGAAC
1 ATTCATGCCAACCAAACATGCTCTAAC-AACATTAGATAAGAGAAC
59040280 CAAGTTGCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
49 2 0.05
50 41 0.95
ACGTcount: A:0.42, C:0.25, G:0.11, T:0.22
Consensus pattern (50 bp):
ATTCATGCCAACCAAACATGCTCTAACAACATTAGATAAGAGAACTTACC
Found at i:59044535 original size:6 final size:6
Alignment explanation
Indices: 59044524--59044555 Score: 55
Period size: 6 Copynumber: 5.2 Consensus size: 6
59044514 AGAATATTTT
59044524 ATTAAA ATTAAA ATTAAA ATTAAA ATTTAAA A
1 ATTAAA ATTAAA ATTAAA ATTAAA A-TTAAA A
59044556 ATTATATAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 19 0.76
7 6 0.24
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (6 bp):
ATTAAA
Found at i:59056463 original size:25 final size:25
Alignment explanation
Indices: 59056413--59056464 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
59056403 CTAATTTCTC
*
59056413 CTTTCTTTCTTCCCCTTTTTCTTTT
1 CTTTCTTTCTTCCCCTTTTTCGTTT
59056438 CTTTCTTT-TTCTCCCTGTTTT-GTTT
1 CTTTCTTTCTTC-CCCT-TTTTCGTTT
59056463 CT
1 CT
59056465 ATTATGTTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 3 0.12
25 17 0.71
26 4 0.17
ACGTcount: A:0.00, C:0.29, G:0.04, T:0.67
Consensus pattern (25 bp):
CTTTCTTTCTTCCCCTTTTTCGTTT
Found at i:59059072 original size:21 final size:21
Alignment explanation
Indices: 59059048--59059091 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
59059038 GTTGCCATAT
*
59059048 TGATGTGTTGTATTGCGACAC
1 TGATGTGTTGTATTGCAACAC
* *
59059069 TGATGTTTTGTGTTGCAACAC
1 TGATGTGTTGTATTGCAACAC
59059090 TG
1 TG
59059092 GTGCTTCCCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.18, C:0.14, G:0.27, T:0.41
Consensus pattern (21 bp):
TGATGTGTTGTATTGCAACAC
Found at i:59059604 original size:16 final size:17
Alignment explanation
Indices: 59059569--59059605 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
59059559 TTAGTTTAGG
*
59059569 CTTTCAATTTTTCCTTT
1 CTTTCAATTTTTCCTCT
59059586 CTTTCAATTTTT-CTCT
1 CTTTCAATTTTTCCTCT
59059602 CTTT
1 CTTT
59059606 TATTTTAGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.11, C:0.24, G:0.00, T:0.65
Consensus pattern (17 bp):
CTTTCAATTTTTCCTCT
Found at i:59061993 original size:3 final size:3
Alignment explanation
Indices: 59061951--59062035 Score: 93
Period size: 3 Copynumber: 28.0 Consensus size: 3
59061941 TTTAGCAATT
* * *
59061951 TTA TTA TT- TTA TTCA TTA TT- TTA ATG TTA TTA TCA TTTA TTA TTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA
*
59061996 TTA TTA TTA TTA TTA TTA TTA TTA TTA TCAA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
59062036 GTTTTATTTC
Statistics
Matches: 69, Mismatches: 8, Indels: 10
0.79 0.09 0.11
Matches are distributed among these distances:
2 4 0.06
3 58 0.84
4 7 0.10
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:59065943 original size:16 final size:17
Alignment explanation
Indices: 59065918--59065950 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
59065908 ATAATTTCAC
*
59065918 TTTTATAAA-TTTAAAA
1 TTTTAAAAATTTTAAAA
59065934 TTTTAAAAATTTTAAAA
1 TTTTAAAAATTTTAAAA
59065951 GGTCTAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTTAAAAATTTTAAAA
Found at i:59067084 original size:30 final size:30
Alignment explanation
Indices: 59067023--59067099 Score: 95
Period size: 30 Copynumber: 2.5 Consensus size: 30
59067013 TATTAGTGGA
59067023 TGACTGATTTGTTACTTTTCGATAACATTAG
1 TGACTGATTTGTTA-TTTTCGATAACATTAG
*
59067054 TGACTGTTTTGTTATTTTC-ATAA-AGTTTAG
1 TGACTGATTTGTTATTTTCGATAACA--TTAG
*
59067084 TGATTGATTTGTTATT
1 TGACTGATTTGTTATT
59067100 AATCAAAGCT
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
28 1 0.02
29 4 0.10
30 23 0.56
31 13 0.32
ACGTcount: A:0.23, C:0.08, G:0.17, T:0.52
Consensus pattern (30 bp):
TGACTGATTTGTTATTTTCGATAACATTAG
Found at i:59068913 original size:17 final size:16
Alignment explanation
Indices: 59068874--59068915 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
59068864 ATACTCAAAG
59068874 TATGAAAAAAACCAAT
1 TATGAAAAAAACCAAT
**
59068890 TGGGAAAACAAACCAAT
1 TATGAAAA-AAACCAAT
59068907 TATGAAAAA
1 TATGAAAAA
59068916 TATTTAGTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.60, C:0.12, G:0.12, T:0.17
Consensus pattern (16 bp):
TATGAAAAAAACCAAT
Found at i:59076247 original size:193 final size:196
Alignment explanation
Indices: 59075918--59076473 Score: 805
Period size: 193 Copynumber: 2.8 Consensus size: 196
59075908 ATTGAGAGCC
* **
59075918 AAAAACTAGGCTCATAATCCAGCAAAGTTAGTATTATAGGGCTATTAGCAACAGATAACAACTTG
1 AAAAACTAGGCTCATAATCCAGCAAAGTCAGTATTATAGGGCTATTAGCAATGGATAACAACTTG
* * *
59075983 TACTTGCCAATGATCAATCAACATATGTTGATTAATCTCTAATTGAGAGCCAAGATAATGTTGAC
66 TACTTGCCAATGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAAGATAATGTCGAC
* *
59076048 TTTGCTGAATTATGAGCCTAGTTTTCCTTTCATTTGCATACAATCATTAGTTGAT-AA-AG-AGA
131 TTTGCTGAATTATGAGCCTAGTTTTCCTTTCATTTGCATACAATCAATAGTTGATGAAGAGAAAA
*
59076110 T
196 A
* * *
59076111 AAAAACTAGGCTCATAATCTAGCAAAGTCAGTATTACAGGGCTATTAGCAATGGATAACAACCTG
1 AAAAACTAGGCTCATAATCCAGCAAAGTCAGTATTATAGGGCTATTAGCAATGGATAACAACTTG
59076176 TACTTGCCAATGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAAGATAATGTCGAC
66 TACTTGCCAATGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAAGATAATGTCGAC
*
59076241 TTTGCTGAATTATGAGCCTAGTTTTCCTTTCATTGGCATACAATCAATAGTTGATGAAGAGAAAA
131 TTTGCTGAATTATGAGCCTAGTTTTCCTTTCATTTGCATACAATCAATAGTTGATGAAGAG-AAA
59076306 AA
195 AA
* * ** * *
59076308 AAAACACTAGGTTCATAATCCAGCAAAGTGAACATTATAGGGCTATTAACAATGGATAATAACTT
1 AAAA-ACTAGGCTCATAATCCAGCAAAGTCAGTATTATAGGGCTATTAGCAATGGATAACAACTT
* * * * *
59076373 GTATTTGCAAATGATCAATCAACACATGTTGATTGATCTCTAGTTGAGAGCCAA-TTGAACGTCG
65 GTACTTGCCAATGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAAGAT-AATGTCG
* * * *
59076437 ACTTTGCTAAATTATGAGTCTAATTTTTCTTTCATTT
129 ACTTTGCTGAATTATGAGCCTAGTTTTCCTTTCATTT
59076474 ACAAGTAATG
Statistics
Matches: 325, Mismatches: 32, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
193 174 0.54
194 2 0.01
195 2 0.01
197 7 0.02
198 140 0.43
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (196 bp):
AAAAACTAGGCTCATAATCCAGCAAAGTCAGTATTATAGGGCTATTAGCAATGGATAACAACTTG
TACTTGCCAATGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAAGATAATGTCGAC
TTTGCTGAATTATGAGCCTAGTTTTCCTTTCATTTGCATACAATCAATAGTTGATGAAGAGAAAA
A
Found at i:59077212 original size:23 final size:24
Alignment explanation
Indices: 59077186--59077238 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 24
59077176 AAATATATGG
*
59077186 AAATAATA-ATTATAAAATATA-AA
1 AAATAATATATTA-AAAATAAATAA
*
59077209 AAAT-ATATATTAAAATTAAATAA
1 AAATAATATATTAAAAATAAATAA
59077232 AAATAAT
1 AAATAAT
59077239 GTTTTGAAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
22 9 0.36
23 14 0.56
24 2 0.08
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (24 bp):
AAATAATATATTAAAAATAAATAA
Found at i:59081404 original size:194 final size:194
Alignment explanation
Indices: 59081075--59081432 Score: 554
Period size: 194 Copynumber: 1.8 Consensus size: 194
59081065 ATTGAGAGCC
* * *
59081075 AAAAACTAGGCTCATAATCCAGCAAAGTTAGTATTATAGGGCTATTAGCAATGGATAATAACTTA
1 AAAAACTAGGCTCATAATCCAGCAAAGTCAGTATTATAGGGCTATTAACAATGGATAACAACTTA
* * * *
59081140 TACTTGCCAATGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAAGATAATGTTGAC
66 TACTTGCAAATGATCAATCAACACATGTTGATTGATCGCTAATTGAGAGCCAAGATAAAGTCGAC
* * *
59081205 TTTGCTGAATTATGAGCCTAGTTTTCCTTTCATTGGCATACAATCATTAGTTTGATGAAGAGAT
131 TTTGCTAAATAATGAGCCTAATTTTCCTTTCATTGGCATACAATCATTAGTTTGATGAAGAGAT
* *
59081269 AAAAACTAGGCTCATAATCCAGCAAAGTCAGTATTATAGGGCTATTAACAATGGATAGCAACTTG
1 AAAAACTAGGCTCATAATCCAGCAAAGTCAGTATTATAGGGCTATTAACAATGGATAACAACTTA
* * **
59081334 TATTTGCAAATGATCAATTAACACATGTTGATTGATCGCTAATTGAGAGCCAATTTAAAGTCGAC
66 TACTTGCAAATGATCAATCAACACATGTTGATTGATCGCTAATTGAGAGCCAAGATAAAGTCGAC
* *
59081399 TTTGCTAAATAATGAGTCTAATTTTTCTTTCATT
131 TTTGCTAAATAATGAGCCTAATTTTCCTTTCATT
59081433 TGCAAGCAAC
Statistics
Matches: 146, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
194 146 1.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (194 bp):
AAAAACTAGGCTCATAATCCAGCAAAGTCAGTATTATAGGGCTATTAACAATGGATAACAACTTA
TACTTGCAAATGATCAATCAACACATGTTGATTGATCGCTAATTGAGAGCCAAGATAAAGTCGAC
TTTGCTAAATAATGAGCCTAATTTTCCTTTCATTGGCATACAATCATTAGTTTGATGAAGAGAT
Found at i:59103312 original size:23 final size:24
Alignment explanation
Indices: 59103286--59103338 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 24
59103276 AAATATATGG
*
59103286 AAATAATA-ATTATAAAATATA-AA
1 AAATAATATATTA-AAAATAAATAA
*
59103309 AAAT-ATATATTAAAATTAAATAA
1 AAATAATATATTAAAAATAAATAA
59103332 AAATAAT
1 AAATAAT
59103339 GTTTTGAAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
22 9 0.36
23 14 0.56
24 2 0.08
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (24 bp):
AAATAATATATTAAAAATAAATAA
Found at i:59103790 original size:19 final size:20
Alignment explanation
Indices: 59103763--59103801 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
59103753 AGATGTATTG
*
59103763 TATATTTATAAAAT-TTTAA
1 TATAATTATAAAATATTTAA
*
59103782 TATAATTATATAATATTTAA
1 TATAATTATAAAATATTTAA
59103802 AATATGTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TATAATTATAAAATATTTAA
Found at i:59107644 original size:193 final size:196
Alignment explanation
Indices: 59107315--59107870 Score: 814
Period size: 193 Copynumber: 2.8 Consensus size: 196
59107305 ATTGAGAGCC
* **
59107315 AAAAACTAGGCTCATAATCCAGCAAAGTTAGTATTATAGGGCTATTAGCAACAGATAACAACTTG
1 AAAAACTAGGCTCATAATCCAGCAAAGTCAGTATTATAGGGCTATTAGCAATGGATAACAACTTG
* * *
59107380 TACTTGCCAATGATCAATCAACATATGTTGATTAATCTCTAATTGAGAGCCAAGATAATGTTGAC
66 TACTTGCCAATGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAAGATAATGTCGAC
* *
59107445 TTTGCTGAATTATGAGCCTAGTTTTCCTTTCATTTGCATACAATCATTAGTTGAT-AA-AG-AGA
131 TTTGCTGAATTATGAGCCTAGTTTTCCTTTCATTTGCATACAATCAATAGTTGATGAAGAGAAAA
*
59107507 T
196 A
* *
59107508 AAAAACTAGGCTCATAATCTAGCAAAGTCAGTATTATAGGGCTATTAGCAATGGATAACAACCTG
1 AAAAACTAGGCTCATAATCCAGCAAAGTCAGTATTATAGGGCTATTAGCAATGGATAACAACTTG
59107573 TACTTGCCAATGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAAGATAATGTCGAC
66 TACTTGCCAATGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAAGATAATGTCGAC
*
59107638 TTTGCTGAATTATGAGCCTAGTTTTCCTTTCATTGGCATACAATCAATAGTTGATGAAGAGAAAA
131 TTTGCTGAATTATGAGCCTAGTTTTCCTTTCATTTGCATACAATCAATAGTTGATGAAGAG-AAA
59107703 AA
195 AA
* * ** * *
59107705 AAAACACTAGGTTCATAATCCAGCAAAGTGAACATTATAGGGCTATTAACAATGGATAATAACTT
1 AAAA-ACTAGGCTCATAATCCAGCAAAGTCAGTATTATAGGGCTATTAGCAATGGATAACAACTT
* * * * *
59107770 GTATTTGCAAATGATCAATCAACACATGTTGATTGATCTCTAGTTGAGAGCCAA-TTGAACGTCG
65 GTACTTGCCAATGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAAGAT-AATGTCG
* * * *
59107834 ACTTTGCTAAATTATGAGTCTAATTTTTCTTTCATTT
129 ACTTTGCTGAATTATGAGCCTAGTTTTCCTTTCATTT
59107871 ACAAGTAACG
Statistics
Matches: 327, Mismatches: 30, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
193 175 0.54
194 2 0.01
195 2 0.01
197 7 0.02
198 141 0.43
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (196 bp):
AAAAACTAGGCTCATAATCCAGCAAAGTCAGTATTATAGGGCTATTAGCAATGGATAACAACTTG
TACTTGCCAATGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAAGATAATGTCGAC
TTTGCTGAATTATGAGCCTAGTTTTCCTTTCATTTGCATACAATCAATAGTTGATGAAGAGAAAA
A
Found at i:59113724 original size:194 final size:194
Alignment explanation
Indices: 59113395--59113752 Score: 554
Period size: 194 Copynumber: 1.8 Consensus size: 194
59113385 ATTGAGAGCC
* * *
59113395 AAAAACTAGGCTCATAATCCAGCAAAGTTAGTATTATAGGGCTATTAGCAATGGATAATAACTTA
1 AAAAACTAGGCTCATAATCCAGCAAAGTCAGTATTATAGGGCTATTAACAATGGATAACAACTTA
* * * *
59113460 TACTTGCCAATGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAAGATAATGTTGAC
66 TACTTGCAAATGATCAATCAACACATGTTGATTGATCGCTAATTGAGAGCCAAGATAAAGTCGAC
* * *
59113525 TTTGCTGAATTATGAGCCTAGTTTTCCTTTCATTGGCATACAATCATTAGTTTGATGAAGAGAT
131 TTTGCTAAATAATGAGCCTAATTTTCCTTTCATTGGCATACAATCATTAGTTTGATGAAGAGAT
* *
59113589 AAAAACTAGGCTCATAATCCAGCAAAGTCAGTATTATAGGGCTATTAACAATGGATAGCAACTTG
1 AAAAACTAGGCTCATAATCCAGCAAAGTCAGTATTATAGGGCTATTAACAATGGATAACAACTTA
* * **
59113654 TATTTGCAAATGATCAATTAACACATGTTGATTGATCGCTAATTGAGAGCCAATTTAAAGTCGAC
66 TACTTGCAAATGATCAATCAACACATGTTGATTGATCGCTAATTGAGAGCCAAGATAAAGTCGAC
* *
59113719 TTTGCTAAATAATGAGTCTAATTTTTCTTTCATT
131 TTTGCTAAATAATGAGCCTAATTTTCCTTTCATT
59113753 TGCAAGCAAC
Statistics
Matches: 146, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
194 146 1.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (194 bp):
AAAAACTAGGCTCATAATCCAGCAAAGTCAGTATTATAGGGCTATTAACAATGGATAACAACTTA
TACTTGCAAATGATCAATCAACACATGTTGATTGATCGCTAATTGAGAGCCAAGATAAAGTCGAC
TTTGCTAAATAATGAGCCTAATTTTCCTTTCATTGGCATACAATCATTAGTTTGATGAAGAGAT
Found at i:59116518 original size:193 final size:196
Alignment explanation
Indices: 59116189--59116744 Score: 805
Period size: 193 Copynumber: 2.8 Consensus size: 196
59116179 ATTGAGAGCC
* **
59116189 AAAAACTAGGCTCATAATCCAGCAAAGTTAGTATTATAGGGCTATTAGCAACAGATAACAACTTG
1 AAAAACTAGGCTCATAATCCAGCAAAGTCAGTATTATAGGGCTATTAGCAATGGATAACAACTTG
* * *
59116254 TACTTGCCAATGATCAATCAACATATGTTGATTAATCTCTAATTGAGAGCCAAGATAATGTTGAC
66 TACTTGCCAATGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAAGATAATGTCGAC
* *
59116319 TTTGCTGAATTATGAGCCTAGTTTTCCTTTCATTTGCATACAATCATTAGTTGAT-AA-AG-AGA
131 TTTGCTGAATTATGAGCCTAGTTTTCCTTTCATTTGCATACAATCAATAGTTGATGAAGAGAAAA
*
59116381 T
196 A
* * *
59116382 AAAAACTAGGCTCATAATCTAGCAAAGTCAGTATTACAGGGCTATTAGCAATGGATAACAACCTG
1 AAAAACTAGGCTCATAATCCAGCAAAGTCAGTATTATAGGGCTATTAGCAATGGATAACAACTTG
59116447 TACTTGCCAATGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAAGATAATGTCGAC
66 TACTTGCCAATGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAAGATAATGTCGAC
*
59116512 TTTGCTGAATTATGAGCCTAGTTTTCCTTTCATTGGCATACAATCAATAGTTGATGAAGAGAAAA
131 TTTGCTGAATTATGAGCCTAGTTTTCCTTTCATTTGCATACAATCAATAGTTGATGAAGAG-AAA
59116577 AA
195 AA
* * ** * *
59116579 AAAACACTAGGTTCATAATCCAGCAAAGTGAACATTATAGGGCTATTAACAATGGATAATAACTT
1 AAAA-ACTAGGCTCATAATCCAGCAAAGTCAGTATTATAGGGCTATTAGCAATGGATAACAACTT
* * * * *
59116644 GTATTTGCAAATGATCAATCAACACATGTTGATTGATCTCTAGTTGAGAGCCAA-TTGAACGTCG
65 GTACTTGCCAATGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAAGAT-AATGTCG
* * * *
59116708 ACTTTGCTAAATTATGAGTCTAATTTTTCTTTCATTT
129 ACTTTGCTGAATTATGAGCCTAGTTTTCCTTTCATTT
59116745 ACAAGTAACG
Statistics
Matches: 325, Mismatches: 32, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
193 174 0.54
194 2 0.01
195 2 0.01
197 7 0.02
198 140 0.43
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (196 bp):
AAAAACTAGGCTCATAATCCAGCAAAGTCAGTATTATAGGGCTATTAGCAATGGATAACAACTTG
TACTTGCCAATGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAAGATAATGTCGAC
TTTGCTGAATTATGAGCCTAGTTTTCCTTTCATTTGCATACAATCAATAGTTGATGAAGAGAAAA
A
Found at i:59117801 original size:31 final size:31
Alignment explanation
Indices: 59117759--59117827 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
59117749 TTTCAATTTA
* *
59117759 GTCACTGATATTTTAGATAATTACTATTTTG
1 GTCACTCATATTTTAGATAATTACTAGTTTG
* **
59117790 GTCACTCATATTTTAGATCATTTTTAGTTTG
1 GTCACTCATATTTTAGATAATTACTAGTTTG
59117821 GTCACTC
1 GTCACTC
59117828 TCTATTAAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.25, C:0.14, G:0.13, T:0.48
Consensus pattern (31 bp):
GTCACTCATATTTTAGATAATTACTAGTTTG
Found at i:59121516 original size:26 final size:26
Alignment explanation
Indices: 59121454--59121503 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
59121444 CATGTATGTG
*
59121454 AAAATATGTATGAATTATAAAATGGA
1 AAAATATATATGAATTATAAAATGGA
* *
59121480 AAAATGTATATGTATTATAAAATG
1 AAAATATATATGAATTATAAAATG
59121504 TAAATTTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34
Consensus pattern (26 bp):
AAAATATATATGAATTATAAAATGGA
Found at i:59121647 original size:3 final size:3
Alignment explanation
Indices: 59121639--59121672 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
59121629 ATGTATAAGT
59121639 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
59121673 ACTTTAAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:59123229 original size:29 final size:30
Alignment explanation
Indices: 59123170--59123227 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
59123160 TCCGAGCCTT
*
59123170 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
59123200 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
59123228 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:59123457 original size:13 final size:13
Alignment explanation
Indices: 59123439--59123470 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
59123429 TTTCCAGCAA
59123439 TTATGAATTTATT
1 TTATGAATTTATT
59123452 TTATGAATTTATT
1 TTATGAATTTATT
*
59123465 TGATGA
1 TTATGA
59123471 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:59123678 original size:50 final size:50
Alignment explanation
Indices: 59123565--59123806 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
59123555 ATTTGGGTAA
* * *
59123565 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
59123621 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
59123671 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
59123721 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
59123771 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
59123807 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:59123754 original size:100 final size:103
Alignment explanation
Indices: 59123565--59123814 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
59123555 ATTTGGGTAA
59123565 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
59123630 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
59123671 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
59123733 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
59123771 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
59123815 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:59129678 original size:29 final size:30
Alignment explanation
Indices: 59129641--59129697 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
59129631 TCCGAGCCTT
*
59129641 GGGGAAAAA-TGTAATTATGTAAAAGTTTA
1 GGGGAAAAATTGTAATTATGAAAAAGTTTA
* *
59129670 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGAAAAATTGTAATTATGAAAAAGTT
59129698 AGAGTCGAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 8 0.33
30 16 0.67
ACGTcount: A:0.42, C:0.02, G:0.25, T:0.32
Consensus pattern (30 bp):
GGGGAAAAATTGTAATTATGAAAAAGTTTA
Found at i:59129927 original size:13 final size:13
Alignment explanation
Indices: 59129909--59129940 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
59129899 TTTCCAGCAA
59129909 TTATGAATTTATT
1 TTATGAATTTATT
59129922 TTATGAATTTATT
1 TTATGAATTTATT
*
59129935 TGATGA
1 TTATGA
59129941 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:59130148 original size:50 final size:50
Alignment explanation
Indices: 59130035--59130276 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
59130025 ATTTGGGTAA
* * *
59130035 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
59130091 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
59130141 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
59130191 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
59130241 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
59130277 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:59130224 original size:100 final size:103
Alignment explanation
Indices: 59130035--59130284 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
59130025 ATTTGGGTAA
59130035 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
59130100 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
59130141 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
59130203 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
59130241 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
59130285 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:59132440 original size:44 final size:44
Alignment explanation
Indices: 59132351--59132441 Score: 103
Period size: 44 Copynumber: 2.1 Consensus size: 44
59132341 GTTTTAGTCC
* * * **
59132351 ACTCCATTGCAACTTCAAGGAGATATGATTATTTTCTTCTGTCT
1 ACTCCACTGCAACTTCAAGGAGATAAGATTATATTCTTCAATCT
* *
59132395 ACTCCACTGCAACTTCAGGGAGATAAGACTTGTATT-TTCAATCT
1 ACTCCACTGCAACTTCAAGGAGATAAGA-TTATATTCTTCAATCT
59132439 ACT
1 ACT
59132442 TCGCCACCAG
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
44 34 0.87
45 5 0.13
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.36
Consensus pattern (44 bp):
ACTCCACTGCAACTTCAAGGAGATAAGATTATATTCTTCAATCT
Found at i:59132511 original size:44 final size:44
Alignment explanation
Indices: 59132457--59133050 Score: 414
Period size: 44 Copynumber: 13.3 Consensus size: 44
59132447 ACCAGTATGG
* *
59132457 GAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCATTACAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACAT
* * * * *
59132501 GAAGATAAGATCTGTTTTCTTCGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACAT
59132545 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACAT
* * * ***
59132589 GAAGACAAAATCTGCTAT-TTTCTATCTACTTCACCACCAGTATGG
1 GAAGACAAGATCTGCTATCTTT-GATCTACTTCA-CGCCAGTACAT
*
59132634 GAAGACAAGATCTGTTGA-CTTTGATCTACTTCACGCC-GATACAT
1 GAAGACAAGATCTGCT-ATCTTTGATCTACTTCACGCCAG-TACAT
* * * ***
59132678 GAAGACAAGATCTGCTTTCTTTGATCTACTCCACCACCAGTATGG
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCA-CGCCAGTACAT
* * * *
59132723 GGAGACAAGATCTGTTGA-CTTTGATCTACTTTACG-CTGATACAT
1 GAAGACAAGATCTGCT-ATCTTTGATCTACTTCACGCCAG-TACAT
* * * * * * ***
59132767 GAAGACAATATCTACTTTCTTTCGATCTGCTTCGCCACCAGTATGG
1 GAAGACAAGATCTGCTATCTTT-GATCTACTTC-ACGCCAGTACAT
* * * * *
59132813 GAAGGCGAGATCTG-TATATTCGATCTACTTCACGCTAGTACAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACAT
* * * * * ***
59132856 GAAGATAAGATCTG-TATTCCTTCGATCTGCTTCGCCACCAGTATGG
1 GAAGACAAGATCTGCTA-T-CTTTGATCTACTTC-ACGCCAGTACAT
* * * *
59132902 GAAGGCGAGATCTGTTATCTTTGATCTACTTCACGCCAGTCCAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACAT
* * * * * ***
59132946 AAAGACAAGATCTGCTTTTTCCTTCGATCTACTTCGCCACCAGTATGG
1 GAAGACAAGATCTGC--TAT-CTTTGATCTACTTC-ACGCCAGTACAT
* * * *
59132994 GAATG-CGAGATCTG-TATATTCGATCTACTTCATGCCAGTACAT
1 GAA-GACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACAT
59133037 GAAGACAAGATCTG
1 GAAGACAAGATCTG
59133051 TATTCCTTCG
Statistics
Matches: 414, Mismatches: 112, Indels: 49
0.72 0.19 0.09
Matches are distributed among these distances:
42 1 0.00
43 42 0.10
44 198 0.48
45 101 0.24
46 38 0.09
47 17 0.04
48 16 0.04
49 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (44 bp):
GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACAT
Found at i:59132644 original size:133 final size:132
Alignment explanation
Indices: 59132457--59133069 Score: 414
Period size: 133 Copynumber: 4.6 Consensus size: 132
59132447 ACCAGTATGG
* * *** *
59132457 GAAGACAAGATCTGGTATCTTT-GATCTACTTCA-CGCCATTACATGAAGATAAGATCTGTTTTC
1 GAAGACAAGATCT-GTAT-TTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGTTTTC
59132520 TTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGT
64 TTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGT
59132585 ACAT
129 ACAT
* * **
59132589 GAAGACAAAATCTGCTATTTTCTATCTACTTCACCACCAGTATGGGAAGACAAGATCTGTTGACT
1 GAAGACAAGATCTG-TATTTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGTTTTCT
* * * * *
59132654 TTGATCTACTTCACGCCGATACATGAAGACAAGATCTGCTTTCTTTGATCTACTCCACCACCAGT
65 TCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTTGATCTACTTCA-CGCCAGT
***
59132719 ATGG
129 ACAT
* * * * * *** * **
59132723 GGAGACAAGATCTGTTGACTTT-GATCTACTTTA-C-GCTGATACATGAAGACAATATCTACTTT
1 GAAGACAAGATCTG-T-ATTTTCGATCTACTTCACCACCAG-TATGGGAAGACAAGATCTGTTTT
* * * * *** * * * * *
59132785 CTTTCGATCTGCTTCGCCACCAGTATGGGAAGGCGAGATCTG-TATATTCGATCTACTTCACGCT
63 C-TTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCC
59132849 AGTACAT
126 AGTACAT
* * * * * *
59132856 GAAGATAAGATCTGTATTCCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCGAGATCTGTTATC
1 GAAGACAAGATCTGTATT--TTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGTTTTC
* * * * * * * *
59132921 TTTGATCTACTTCACGCCAGTCCATAAAGACAAGATCTGCTTTTTCCTTCGATCTACTTCGCCAC
64 TTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGC--TAT-CTTTGATCTACTTC-ACGC
***
59132986 CAGTATGG
125 CAGTACAT
* * ** *** *
59132994 GAATG-CGAGATCTGTATATTCGATCTACTTCA-TGCCAGTACATGAAGACAAGATCTGTATTCC
1 GAA-GACAAGATCTGTATTTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGT-TTTC
*
59133057 TTCGATCTGCTTC
64 TTCGATCTACTTC
59133070 GCCACCAGTA
Statistics
Matches: 355, Mismatches: 106, Indels: 36
0.71 0.21 0.07
Matches are distributed among these distances:
131 6 0.02
132 28 0.08
133 130 0.37
134 73 0.21
135 56 0.16
136 29 0.08
137 13 0.04
138 19 0.05
139 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
GAAGACAAGATCTGTATTTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGTTTTCTT
CGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTAC
AT
Found at i:59132670 original size:89 final size:89
Alignment explanation
Indices: 59132427--59133085 Score: 741
Period size: 89 Copynumber: 7.4 Consensus size: 89
59132417 ATAAGACTTG
* *
59132427 TATT-TTCAATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGGTATCTTTGATCTACTTCAC
1 TATTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTA-CTTTGATCTACTTCAC
* *
59132491 GCCATTACATGAAGATAAGATCTG-
65 GCCAGTACATGAAGACAAGATCTGC
* * * * *** *
59132515 TTTTCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTATCTTTGATCTACTTCAC
1 TATTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTA-CTTTGATCTACTTCAC
*
59132579 GCCAGTACATGAAGACAAAATCTGC
65 GCCAGTACATGAAGACAAGATCTGC
* *
59132604 TATT-TTCTATCTACTTCACCACCAGTATGGGAAGACAAGATCTGTTGACTTTGATCTACTTCAC
1 TATTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTT-ACTTTGATCTACTTCAC
59132668 GCC-GATACATGAAGACAAGATCTGC
65 GCCAG-TACATGAAGACAAGATCTGC
* * * * *
59132693 T-TTCTTTGATCTACTCCACCACCAGTATGGGGAGACAAGATCTGTTGACTTTGATCTACTTTAC
1 TATTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTT-ACTTTGATCTACTTCAC
* * *
59132757 G-CTGATACATGAAGACAATATCTAC
65 GCCAG-TACATGAAGACAAGATCTGC
* * * *
59132782 T-TTCTTTCGATCTGCTTCGCCACCAGTATGGGAAGGCGAGATCTGTATA-TTCGATCTACTTCA
1 TATTC-TTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGT-TACTTTGATCTACTTCA
* *
59132845 CGCTAGTACATGAAGATAAGATCTG-
64 CGCCAGTACATGAAGACAAGATCTGC
* * *
59132870 TATTCCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCGAGATCTGTTATCTTTGATCTACTTCA
1 TATT-CTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTA-CTTTGATCTACTTCA
* *
59132935 CGCCAGTCCATAAAGACAAGATCTGC
64 CGCCAGTACATGAAGACAAGATCTGC
* * *
59132961 TTTTTCCTTCGATCTACTTCGCCACCAGTATGGGAATG-CGAGATCTGTATA-TTCGATCTACTT
1 -TATT-CTTCGATCTACTTCGCCACCAGTATGGGAA-GACAAGATCTGT-TACTTTGATCTACTT
*
59133024 CATGCCAGTACATGAAGACAAGATCTG-
62 CACGCCAGTACATGAAGACAAGATCTGC
*
59133051 TATTCCTTCGATCTGCTTCGCCACCAGTATGGGAA
1 TATT-CTTCGATCTACTTCGCCACCAGTATGGGAA
59133086 AGCGAGATCT
Statistics
Matches: 497, Mismatches: 56, Indels: 35
0.85 0.10 0.06
Matches are distributed among these distances:
88 82 0.16
89 261 0.53
90 72 0.14
91 36 0.07
92 43 0.09
93 3 0.01
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (89 bp):
TATTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTACTTTGATCTACTTCACG
CCAGTACATGAAGACAAGATCTGC
Found at i:59139408 original size:26 final size:26
Alignment explanation
Indices: 59139346--59139395 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
59139336 CATGTATGTG
*
59139346 AAAATATGTATGAATTATAAAATGGA
1 AAAATATATATGAATTATAAAATGGA
* *
59139372 AAAATGTATATGTATTATAAAATG
1 AAAATATATATGAATTATAAAATG
59139396 TAAATTTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34
Consensus pattern (26 bp):
AAAATATATATGAATTATAAAATGGA
Found at i:59139548 original size:3 final size:3
Alignment explanation
Indices: 59139540--59139564 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
59139530 ATGTATAAGT
59139540 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
59139565 ACTTTAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:59140952 original size:20 final size:21
Alignment explanation
Indices: 59140915--59140954 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
59140905 TTGTGGGTCA
59140915 AAAAAATGTAATAAATTTATTT
1 AAAAAATG-AATAAATTTATTT
*
59140937 AAAAAATG-ATATATTTAT
1 AAAAAATGAATAAATTTAT
59140955 AATCTTTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
22 8 0.47
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (21 bp):
AAAAAATGAATAAATTTATTT
Found at i:59144310 original size:193 final size:193
Alignment explanation
Indices: 59143981--59145021 Score: 1394
Period size: 193 Copynumber: 5.4 Consensus size: 193
59143971 TTGTTCTTGC
* *
59143981 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTTGGCTTTG-TTGAATTATGAGTCTAGT
1 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTT-AATTATGAGTCTAGT
59144045 TTTCCTTTCATTGGCATGCAATCATTAGTTGATGAAGAGATAAAAACTAGGCTCATAATTCAGCA
65 TTTCCTTTCATTGGCATGCAATCATTAGTTGATGAAGAGATAAAAACTAGGCTCATAATTCAGCA
* *
59144110 AAGTCAACATTATAACGCTATTAGCAACGGACAACAACTTGTACTTGCTAATGATCAATCAACA
130 AAGTCAACATTATAAGGCTATTAGCAACGGATAACAACTTGTACTTGCTAATGATCAATCAACA
* *
59144174 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTTCATTATGAATCTAGTT
1 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTTAATTATGAGTCTAGTT
* *
59144239 TTCCTTTTATTGGCATACAATCATTAGTTGATGAAGAGATAAAAACTAGGCTCATAATTCAGCAA
66 TTCCTTTCATTGGCATGCAATCATTAGTTGATGAAGAGATAAAAACTAGGCTCATAATTCAGCAA
* *
59144304 AGTCAACATTATAACGCTATTAGCAACGGACAACAACTTGTACTTGCTAATGATCAATCAACA
131 AGTCAACATTATAAGGCTATTAGCAACGGATAACAACTTGTACTTGCTAATGATCAATCAACA
* *
59144367 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTTCATTATGAATCTAGTT
1 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTTAATTATGAGTCTAGTT
* * * *
59144432 TTCCTTTTATTGGCATACAATCATTAGTTGATAAAGAGATAAAAATTAGGCTCATAA-TCTAGCA
66 TTCCTTTCATTGGCATGCAATCATTAGTTGATGAAGAGATAAAAACTAGGCTCATAATTC-AGCA
* * *
59144496 AAGTCAACATTATAGGGCTATTAGCAACGGATAGCAACTTGTACTTGC-CATG-T---T-----
130 AAGTCAACATTATAAGGCTATTAGCAACGGATAACAACTTGTACTTGCTAATGATCAATCAACA
* * * * * * * *
59144550 GA--TTGATAT-ATATCTAATTGAGGGCCAAGTTAATGTTGGCTTTGCTGAATAATGAGTCTAAT
1 CATGTTGAT-TGATCTCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTTAATTATGAGTCTAGT
* * *
59144612 TTTCCTTTCATTTGCATGCAATCATTAGTTGATGAAGAGATAAAAACTAGACTCATAATCCAGCA
65 TTTCCTTTCATTGGCATGCAATCATTAGTTGATGAAGAGATAAAAACTAGGCTCATAATTCAGCA
** * *
59144677 AAGTCAGTATTAT-AGGACTATTAGCAATGGATAACAACTTGTACTTGCCAATGATCAATCAACA
130 AAGTCAACATTATAAGG-CTATTAGCAACGGATAACAACTTGTACTTGCTAATGATCAATCAACA
* * * *
59144741 CATGTTAATTGATCTCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTGAATTATGAGCCTAGTT
1 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTTAATTATGAGTCTAGTT
* * * *
59144806 TTCCTTTCATTGGCATGCAATCAATAGTTGATGAAGAGAAAAAAAACACTAGGTTCATAATCCAG
66 TTCCTTTCATTGGCATGCAATCATTAGTTGATGAAGAG--ATAAAA-ACTAGGCTCATAATTCAG
* * * * * * * *
59144871 CAAGGTGAACATTATAGGGCTATTAACAATGGATAATAACTTGTATTTGCAAATGATCAATCAAC
128 CAAAGTCAACATTATAAGGCTATTAGCAACGGATAACAACTTGTACTTGCTAATGATCAATCAAC
59144936 A
193 A
* * * *
59144937 CATGTTGATTGATCTCTAGTTGAGAGCCAATTTAATGTCGACTTTGCTAAATTATGAGTCTAATT
1 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTTAATTATGAGTCTAGTT
* * *
59145002 TTTCTTTCATTTGCAAGCAA
66 TTCCTTTCATTGGCATGCAA
59145022 CGATCAATTT
Statistics
Matches: 758, Mismatches: 68, Indels: 41
0.87 0.08 0.05
Matches are distributed among these distances:
180 2 0.00
181 145 0.19
182 5 0.01
183 2 0.00
186 1 0.00
188 1 0.00
191 2 0.00
192 6 0.01
193 440 0.58
194 2 0.00
195 5 0.01
196 145 0.19
197 2 0.00
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (193 bp):
CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTTAATTATGAGTCTAGTT
TTCCTTTCATTGGCATGCAATCATTAGTTGATGAAGAGATAAAAACTAGGCTCATAATTCAGCAA
AGTCAACATTATAAGGCTATTAGCAACGGATAACAACTTGTACTTGCTAATGATCAATCAACA
Found at i:59144763 original size:374 final size:379
Alignment explanation
Indices: 59143981--59145012 Score: 1308
Period size: 374 Copynumber: 2.7 Consensus size: 379
59143971 TTGTTCTTGC
*
59143981 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTTGGCTTTG-TTGAATTATGAGTCTAGT
1 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTT-AATTATGAGTCTAGT
*
59144045 TTTCCTTTCATTGGCATGCAATCATTAGTTGATGAAGAGATAAAAACTAGGCTCATAAT-TCAGC
65 TTTCCTTTCATTGGCATGCAATCATTAGTTGATAAAGAGATAAAAACTAGGCTCATAATCT-AGC
** *
59144109 AAAGTCAACATTATAACGCTATTAGCAACGGACAACAACTTGTACTTGCTAATGATCAATCAACA
129 AAAGTCAACATTATAGGGCTATTAGCAACGGATAACAACTTGTACTTGCTAATGAT--AT----A
* ** * *
59144174 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTTCATTATGAATCTAGTT
188 CA-GTTGATTGATATCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTGAATAATGAATCTAATT
* * *
59144239 TTCCTTTTATTGGCATACAATCATTAGTTGATGAAGAGATAAAAACTAGGCTCATAATTCAGCAA
252 TTCCTTTCATTGGCATACAATCATTAGTTGATGAAGAGATAAAAACTAGACTCATAATCCAGCAA
*
59144304 AGTCAACATTATAACGCTATTAGCAACGGACAACAACTTGTACTTGCTAATGATCAATCAACA
317 AGTCAACATTATAACGCTATTAGCAACGGACAACAACTTGTACTTGCCAATGATCAATCAACA
* * *
59144367 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTTCATTATGAATCTAGTT
1 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTTAATTATGAGTCTAGTT
* * *
59144432 TTCCTTTTATTGGCATACAATCATTAGTTGATAAAGAGATAAAAATTAGGCTCATAATCTAGCAA
66 TTCCTTTCATTGGCATGCAATCATTAGTTGATAAAGAGATAAAAACTAGGCTCATAATCTAGCAA
* * *
59144497 AGTCAACATTATAGGGCTATTAGCAACGGATAGCAACTTGTACTTGC-CATG-T-T-GA-TTGAT
131 AGTCAACATTATAGGGCTATTAGCAACGGATAACAACTTGTACTTGCTAATGATATACAGTTGAT
* * * *
59144557 AT-ATATCTAATTGAGGGCCAAGTTAATGTTGGCTTTGCTGAATAATGAGTCTAATTTTCCTTTC
196 -TGATATCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTGAATAATGAATCTAATTTTCCTTTC
* * **
59144621 ATTTGCATGCAATCATTAGTTGATGAAGAGATAAAAACTAGACTCATAATCCAGCAAAGTCAGTA
260 ATTGGCATACAATCATTAGTTGATGAAGAGATAAAAACTAGACTCATAATCCAGCAAAGTCAACA
* * *
59144686 TTAT-AGGACTATTAGCAATGGATAACAACTTGTACTTGCCAATGATCAATCAACA
325 TTATAACG-CTATTAGCAACGGACAACAACTTGTACTTGCCAATGATCAATCAACA
* * *
59144741 CATGTTAATTGATCTCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTGAATTATGAGCCTAGTT
1 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTTAATTATGAGTCTAGTT
* * * * *
59144806 TTCCTTTCATTGGCATGCAATCAATAGTTGATGAAGAGAAAAAAAACACTAGGTTCATAATCCAG
66 TTCCTTTCATTGGCATGCAATCATTAGTTGAT-AA-AGAGATAAAA-ACTAGGCTCATAATCTAG
* * * * * * *
59144871 CAAGGTGAACATTATAGGGCTATTAACAATGGATAATAACTTGTATTTGCAAATGATCAATCAAC
128 CAAAGTCAACATTATAGGGCTATTAGCAACGGATAACAACTTGTACTTGCTAATGAT--AT----
* * * * * *
59144936 ACATGTTGATTGATCTCTAGTTGAGAGCCAATTTAATGTCGACTTTGCTAAATTATGAGTCTAAT
187 ACA-GTTGATTGATATCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTGAATAATGAATCTAAT
*
59145001 TTTTCTTTCATT
251 TTTCCTTTCATT
59145013 TGCAAGCAAC
Statistics
Matches: 560, Mismatches: 66, Indels: 37
0.84 0.10 0.06
Matches are distributed among these distances:
373 2 0.00
374 252 0.45
375 3 0.01
376 9 0.02
377 58 0.10
378 3 0.01
379 1 0.00
381 1 0.00
382 1 0.00
384 1 0.00
385 3 0.01
386 160 0.29
387 4 0.01
388 1 0.00
389 61 0.11
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (379 bp):
CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTTAATTATGAGTCTAGTT
TTCCTTTCATTGGCATGCAATCATTAGTTGATAAAGAGATAAAAACTAGGCTCATAATCTAGCAA
AGTCAACATTATAGGGCTATTAGCAACGGATAACAACTTGTACTTGCTAATGATATACAGTTGAT
TGATATCTAATTGAGAGCCAAGTTAATGTCGACTTTGCTGAATAATGAATCTAATTTTCCTTTCA
TTGGCATACAATCATTAGTTGATGAAGAGATAAAAACTAGACTCATAATCCAGCAAAGTCAACAT
TATAACGCTATTAGCAACGGACAACAACTTGTACTTGCCAATGATCAATCAACA
Found at i:59144962 original size:196 final size:193
Alignment explanation
Indices: 59144562--59145021 Score: 659
Period size: 196 Copynumber: 2.4 Consensus size: 193
59144552 TTGATATATA
* * *
59144562 TCTAATTGAGGGCCAAGTTAATGTTGGCTTTGCTGAATAATGAGTCTAATTTTCCTTTCATTTGC
1 TCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTGAATTATGAGTCTAATTTTCCTTTCATTTGC
* * **
59144627 ATGCAATCATTAGTTGATGAAGAGATAAAAACTAGACTCATAATCCAGCAAAGTCAGTATTATAG
66 ATGCAATCAATAGTTGATGAAGAGAAAAAAACTAGACTCATAATCCAGCAAAGTCAACATTATAG
* *
59144692 GACTATTAGCAATGGATAACAACTTGTACTTGCCAATGATCAATCAACACATGTTAATTGATC
131 GACTATTAACAATGGATAACAACTTGTACTTGCAAATGATCAATCAACACATGTTAATTGATC
* * *
59144755 TCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTGAATTATGAGCCTAGTTTTCCTTTCATTGGC
1 TCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTGAATTATGAGTCTAATTTTCCTTTCATTTGC
** * *
59144820 ATGCAATCAATAGTTGATGAAGAGAAAAAAAACACTAGGTTCATAATCCAGCAAGGTGAACATTA
66 ATGCAATCAATAGTTGATGAAGAG--AAAAAA-ACTAGACTCATAATCCAGCAAAGTCAACATTA
* * * *
59144885 TAGGGCTATTAACAATGGATAATAACTTGTATTTGCAAATGATCAATCAACACATGTTGATTGAT
128 TAGGACTATTAACAATGGATAACAACTTGTACTTGCAAATGATCAATCAACACATGTTAATTGAT
59144950 C
193 C
* * * * *
59144951 TCTAGTTGAGAGCCAATTTAATGTCGACTTTGCTAAATTATGAGTCTAATTTTTCTTTCATTTGC
1 TCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTGAATTATGAGTCTAATTTTCCTTTCATTTGC
*
59145016 AAGCAA
66 ATGCAA
59145022 CGATCAATTT
Statistics
Matches: 235, Mismatches: 29, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
193 82 0.35
195 5 0.02
196 148 0.63
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.33
Consensus pattern (193 bp):
TCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTGAATTATGAGTCTAATTTTCCTTTCATTTGC
ATGCAATCAATAGTTGATGAAGAGAAAAAAACTAGACTCATAATCCAGCAAAGTCAACATTATAG
GACTATTAACAATGGATAACAACTTGTACTTGCAAATGATCAATCAACACATGTTAATTGATC
Found at i:59152113 original size:241 final size:239
Alignment explanation
Indices: 59151564--59152866 Score: 1770
Period size: 241 Copynumber: 5.5 Consensus size: 239
59151554 AACTCTAACA
* * * * * **
59151564 ATTAATTCGACTCTCAATTAAGGATCAAGATTTGTTAGATAAACAAATTA-ATTGATTGAATTTG
1 ATTAATTTGACTCTCAATTAAGGATC-ACATTTATTAGATAAACAAACTAGATCGATTGAAACTG
* *
59151628 ACTATGATCAATCTATTAATTAGTACCCATTTATCTAGCTTTAACACATATAAGATGCTTTCCAA
65 ACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
* * * * *
59151693 TGCTCATTGCTTTATAATGTCAACTTTTCTGGATGATGAGCCTAATTTTTATTTCT--T--T-GC
130 TGCTCGTAGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTCATTTCTCATCATCGC
59151753 ATGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAC
195 ATGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAC
* * * * *
59151798 ACTAATTTGGCTCTCAATTAAGGATCAATATTTATTAGATAAACAAACTAAATCGATTGAAACCG
1 ATTAATTTGACTCTCAATTAAGGATC-ACATTTATTAGATAAACAAACTAGATCGATTGAAACTG
*
59151863 ACCATGATCAATCTATTAATTAGTACCCGTTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
65 ACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
* * *
59151928 TGCTTGTGGCTTTATAATGACAACTTTGCTGGATTATGAGCCTAATTTTCATTTCTTCATCATCG
130 TGCTCGTAGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTCATTTC-TCATCATCG
* * *
59151993 GATGCAAATAAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAT
194 CATGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAC
*
59152039 ATTAATTTGACTCTAAATTAAGGATCGACATTTATTAGATAAACAAACTAGATCGATTGAAACTG
1 ATTAATTTGACTCTCAATTAAGGATC-ACATTTATTAGATAAACAAACTAGATCGATTGAAACTG
* *
59152104 GCCATGATCAATATATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
65 ACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
* * *
59152169 TGCTCATTGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTTA-TT-TC-T--TCGC
130 TGCTCGTAGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTCATTTCTCATCATCGC
* *
59152229 GTGCAAATGAAAGGAAAGTTAGACTCATAATTTAGCAAAGTCGAC
195 ATGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAC
* * * * * *
59152274 ACTAATTTGGCTCTCAATTAAGGATAGACATATATTAGATAAACAAACTAGATTGATTGAAACCG
1 ATTAATTTGACTCTCAATTAAGGAT-CACATTTATTAGATAAACAAACTAGATCGATTGAAACTG
* * * *
59152339 ACCATGATCAATCTATTAATTAGTACTCGTTTGTCTAGTTTTAACACATATAAGATGCTTTCTAA
65 ACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
*
59152404 TGCTTGTAGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTCATTTCATCATCATCG
130 TGCTCGTAGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTCATTTC-TCATCATCG
* *
59152469 CATGCAAATGAAAGGAAAATTAGACTCATAATTTAGCAAAGTCGAC
194 CATGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAC
* * * *
59152515 ATTAATTTGACTCTCAATTAAAGATCAGCATTTATTAGATAAATAAACTCGGTCGATTGAAA-TC
1 ATTAATTTGACTCTCAATTAAGGATCA-CATTTATTAGATAAACAAACTAGATCGATTGAAACT-
* *
59152579 GACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACAAATATAAGATGCTTTCTA
64 GACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCA
* * * * * * * *
59152644 ATGCTCGTAGCCTTATAATGTCAATTTTGTTGGATTGTGAACGTAGTTTTCATTTCTTCATCATT
129 ATGCTCGTAGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTCATTTC-TCATCATC
** * *
59152709 GCATGCAAATGAAAGGAAAACTAAACTCATAATTCAGCAAAGTCAAC
193 GCATGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAC
* * *
59152756 ATTAATTT-AGCTTTCAATTAAGGATCAGCTTTTATTAGATAAACAAACTAAATCGATT-AAGAC
1 ATTAATTTGA-CTCTCAATTAAGGATCA-CATTTATTAGATAAACAAACTAGATCGATTGAA-AC
* *
59152819 TGACCATGCTCCATCTATTAATTAGTACCCATTTATCTAGTTTTAACA
63 TGACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACA
59152867 ATTTTCTAAT
Statistics
Matches: 951, Mismatches: 99, Indels: 31
0.88 0.09 0.03
Matches are distributed among these distances:
234 44 0.05
235 327 0.34
236 3 0.00
237 1 0.00
238 5 0.01
239 1 0.00
240 7 0.01
241 562 0.59
242 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (239 bp):
ATTAATTTGACTCTCAATTAAGGATCACATTTATTAGATAAACAAACTAGATCGATTGAAACTGA
CCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAAT
GCTCGTAGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTCATTTCTCATCATCGCA
TGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAC
Found at i:59152509 original size:476 final size:475
Alignment explanation
Indices: 59151564--59152866 Score: 1923
Period size: 476 Copynumber: 2.7 Consensus size: 475
59151554 AACTCTAACA
* * * * * *
59151564 ATTAATTCGACTCTCAATTAAGGATCAAGATTTGTTAGATAAACAAATTA-ATTGATTGAATTTG
1 ATTAATTTGACTCTCAATTAAGGATC-ACATTTATTAGATAAACAAACTAGATCGATTGAA-ATG
* *
59151628 ACTATGATCAATCTATTAATTAGTACCCATTTATCTAGCTTTAACACATATAAGATGCTTTCCAA
64 ACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
* * *
59151693 TGCTCATTGCTTTATAATGTCAACTTTTCTGGATGATGAGCCTAATTTTTATTTCTTTGCATGCA
129 TGCTCATTGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTTATTTCTTCGCATGCA
59151758 AATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGACACTAATTTGGCTCTCAATTAAGGAT
194 AATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGACACTAATTTGGCTCTCAATTAAGGAT
*
59151823 CA-ATATTTATTAGATAAACAAACTAAATCGATTGAAACCGACCATGATCAATCTATTAATTAGT
259 CAGACATTTATTAGATAAACAAACTAAATCGATTGAAACCGACCATGATCAATCTATTAATTAGT
*
59151887 ACCCGTTTATCTAGTTTTAACACATATAAGATGCTTTCCAATGCTTGTGGCTTTATAATGACAAC
324 ACCCGTTTATCTAGTTTTAACACATATAAGATGCTTTCCAATGCTTGTAGCTTTATAATGACAAC
* * *
59151952 TTTGCTGGATTATGAGCCTAATTTTCATTTCTTCATCATCGGATGCAAATAAAAGGAAAGTTAGA
389 TTTGCTGGATTATGAGCCTAATTTTCATTTCATCATCATCGCATGCAAATAAAAGGAAAATTAGA
*
59152017 CTCATAATTCAGCAAAGTCGAT
454 CTCATAATTCAGCAAAGTCGAC
*
59152039 ATTAATTTGACTCTAAATTAAGGATCGACATTTATTAGATAAACAAACTAGATCGATTGAAACTG
1 ATTAATTTGACTCTCAATTAAGGATC-ACATTTATTAGATAAACAAACTAGATCGATTGAAA-TG
* *
59152104 GCCATGATCAATATATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
64 ACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
*
59152169 TGCTCATTGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTTATTTCTTCGCGTGCA
129 TGCTCATTGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTTATTTCTTCGCATGCA
*
59152234 AATGAAAGGAAAGTTAGACTCATAATTTAGCAAAGTCGACACTAATTTGGCTCTCAATTAAGGAT
194 AATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGACACTAATTTGGCTCTCAATTAAGGAT
* * *
59152299 -AGACATATATTAGATAAACAAACTAGATTGATTGAAACCGACCATGATCAATCTATTAATTAGT
259 CAGACATTTATTAGATAAACAAACTAAATCGATTGAAACCGACCATGATCAATCTATTAATTAGT
* * * *
59152363 ACTCGTTTGTCTAGTTTTAACACATATAAGATGCTTTCTAATGCTTGTAGCTTTATAATGTCAAC
324 ACCCGTTTATCTAGTTTTAACACATATAAGATGCTTTCCAATGCTTGTAGCTTTATAATGACAAC
*
59152428 TTTGCTGGATTATGAGCCTAATTTTCATTTCATCATCATCGCATGCAAATGAAAGGAAAATTAGA
389 TTTGCTGGATTATGAGCCTAATTTTCATTTCATCATCATCGCATGCAAATAAAAGGAAAATTAGA
*
59152493 CTCATAATTTAGCAAAGTCGAC
454 CTCATAATTCAGCAAAGTCGAC
* * * *
59152515 ATTAATTTGACTCTCAATTAAAGATCAGCATTTATTAGATAAATAAACTCGGTCGATTGAAATCG
1 ATTAATTTGACTCTCAATTAAGGATCA-CATTTATTAGATAAACAAACTAGATCGATTGAAAT-G
* *
59152580 ACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACAAATATAAGATGCTTTCTAA
64 ACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
* * * * * * * * * *
59152645 TGCTCGTAGCCTTATAATGTCAATTTTGTTGGATTGTGAACGTAGTTTTCATTTCTTCATCATTG
129 TGCTCATTGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTTATTTC-T--TC---G
** * * * * *
59152710 CATGCAAATGAAAGGAAAACTAAACTCATAATTCAGCAAAGTCAACATTAATTTAGCTTTCAATT
188 CATGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGACACTAATTTGGCTCTCAATT
* * * *
59152775 AAGGATCAG-CTTTTATTAGATAAACAAACTAAATCGATT-AAGACTGACCATGCTCCATCTATT
253 AAGGATCAGACATTTATTAGATAAACAAACTAAATCGATTGAA-ACCGACCATGATCAATCTATT
*
59152838 AATTAGTACCCATTTATCTAGTTTTAACA
317 AATTAGTACCCGTTTATCTAGTTTTAACA
59152867 ATTTTCTAAT
Statistics
Matches: 745, Mismatches: 70, Indels: 19
0.89 0.08 0.02
Matches are distributed among these distances:
475 47 0.06
476 558 0.75
477 1 0.00
479 2 0.00
481 2 0.00
482 133 0.18
483 2 0.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (475 bp):
ATTAATTTGACTCTCAATTAAGGATCACATTTATTAGATAAACAAACTAGATCGATTGAAATGAC
CATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAATG
CTCATTGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTTTTATTTCTTCGCATGCAAA
TGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGACACTAATTTGGCTCTCAATTAAGGATCA
GACATTTATTAGATAAACAAACTAAATCGATTGAAACCGACCATGATCAATCTATTAATTAGTAC
CCGTTTATCTAGTTTTAACACATATAAGATGCTTTCCAATGCTTGTAGCTTTATAATGACAACTT
TGCTGGATTATGAGCCTAATTTTCATTTCATCATCATCGCATGCAAATAAAAGGAAAATTAGACT
CATAATTCAGCAAAGTCGAC
Found at i:59154532 original size:17 final size:17
Alignment explanation
Indices: 59154494--59154532 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
59154484 AATTGAATCG
59154494 ATTTAAAGATTTTAATT
1 ATTTAAAGATTTTAATT
*
59154511 TTTTAAAGAATTTT-ATT
1 ATTTAAAG-ATTTTAATT
59154528 ATTTA
1 ATTTA
59154533 TAACTAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (17 bp):
ATTTAAAGATTTTAATT
Found at i:59168225 original size:16 final size:16
Alignment explanation
Indices: 59168187--59168225 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
59168177 ATGTCTATTC
59168187 TATTATATATAATTTAA
1 TATT-TATATAATTTAA
* *
59168204 TTTTTATATAATTTGA
1 TATTTATATAATTTAA
59168220 TATTTA
1 TATTTA
59168226 AACTTTTATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 16 0.84
17 3 0.16
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (16 bp):
TATTTATATAATTTAA
Found at i:59168575 original size:43 final size:45
Alignment explanation
Indices: 59168492--59168581 Score: 139
Period size: 43 Copynumber: 2.0 Consensus size: 45
59168482 AAACAACAAC
*
59168492 AAAGCTGATGAAAAAAAAATAAAACTGATGAAAAATAGGTGATGGG
1 AAAGCTGATG-AAAAAAAATAAAACTGATGAAAAACAGGTGATGGG
*
59168538 AAAGCTGATG-AGAAAAA-AAAACTGATGAAAAACAGGTGATGGG
1 AAAGCTGATGAAAAAAAATAAAACTGATGAAAAACAGGTGATGGG
59168581 A
1 A
59168582 CAGCACGACA
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
43 26 0.62
44 6 0.14
46 10 0.24
ACGTcount: A:0.53, C:0.06, G:0.26, T:0.16
Consensus pattern (45 bp):
AAAGCTGATGAAAAAAAATAAAACTGATGAAAAACAGGTGATGGG
Found at i:59168792 original size:4 final size:4
Alignment explanation
Indices: 59168783--59168815 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
59168773 GGGAAGGGAA
*
59168783 AAAG AAAG AAAG AAAG AAAG AAAG ATAG AAAG A
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG A
59168816 GAAGCAGAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.03
Consensus pattern (4 bp):
AAAG
Found at i:59170851 original size:14 final size:14
Alignment explanation
Indices: 59170832--59170866 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
59170822 GACTTTTTTT
* *
59170832 TTCTAATGATATTA
1 TTCTAACGATACTA
59170846 TTCTAACGATACTA
1 TTCTAACGATACTA
59170860 TTCTAAC
1 TTCTAAC
59170867 ATGTAATTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.34, C:0.17, G:0.06, T:0.43
Consensus pattern (14 bp):
TTCTAACGATACTA
Found at i:59171746 original size:33 final size:33
Alignment explanation
Indices: 59171662--59171750 Score: 88
Period size: 33 Copynumber: 2.7 Consensus size: 33
59171652 TAATCTAATA
* * *
59171662 CCACCGCAGTACAGCACTTCTACTGGCCCATAT
1 CCACCGTAGTACAGCACTCCTCCTGGCCCATAT
* * ** ** *
59171695 GCACCGTATTACTCCACTCCTCCTGGGTCGTAT
1 CCACCGTAGTACAGCACTCCTCCTGGCCCATAT
59171728 CCACCGTAGTACAGCACTCCTCC
1 CCACCGTAGTACAGCACTCCTCC
59171751 CGGCTTAAGT
Statistics
Matches: 42, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.20, C:0.40, G:0.16, T:0.24
Consensus pattern (33 bp):
CCACCGTAGTACAGCACTCCTCCTGGCCCATAT
Found at i:59172071 original size:65 final size:64
Alignment explanation
Indices: 59171967--59172202 Score: 293
Period size: 65 Copynumber: 3.7 Consensus size: 64
59171957 AATTAGATTA
**
59171967 ATTACAACATTAAAACTTGGAACAAACTTTATGGTCATAAATTAGATTAATTGCAACATTACAAC
1 ATTACAACATTAAAACTTGGAACAAACTTTATAAT-ATAAATTAGATTAATTGCAACATTACAAC
* *
59172032 ATTACAACATTAAAACTTGGAACAAACTTTGTAGTCATAAATTAGATTAATTGCAACATTACAAC
1 ATTACAACATTAAAACTTGGAACAAACTTTATAAT-ATAAATTAGATTAATTGCAACATTACAAC
* * *
59172097 ATTACAACATTAAAATTTGGAACAAACTTTATAATATAAATT--TTGTAATAT--AA-ATTAAAT
1 ATTACAACATTAAAACTTGGAACAAACTTTATAATATAAATTAGAT-TAAT-TGCAACATTACA-
59172157 AC
63 AC
* * **
59172159 ATTACAATATTAAAAATTGGAACAAACTTGGTAATATAAATTAG
1 ATTACAACATTAAAACTTGGAACAAACTTTATAATATAAATTAG
59172203 GTACATTGGA
Statistics
Matches: 155, Mismatches: 11, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
61 5 0.03
62 43 0.28
63 4 0.03
64 8 0.05
65 95 0.61
ACGTcount: A:0.47, C:0.12, G:0.08, T:0.33
Consensus pattern (64 bp):
ATTACAACATTAAAACTTGGAACAAACTTTATAATATAAATTAGATTAATTGCAACATTACAAC
Found at i:59173528 original size:676 final size:677
Alignment explanation
Indices: 59172196--59173552 Score: 2254
Period size: 676 Copynumber: 2.0 Consensus size: 677
59172186 TTGGTAATAT
* *
59172196 AAATTAGGTACATTGGATTACATAAGCTCAATTCCTACCCGATCGTGACGATTGTCCAATATGGT
1 AAATTAGGTACAATGGATTACATAAGCTCAATTCCTACCCGATCGTGACAATTGTCCAATATGGT
* * *
59172261 AGTTTCGCTTCGAGCATTTACTTCGATTATGACCAGCTAATCTGCATAATCCACAACGCTTACCG
66 AGTTTCGCTGCGAGCATTTACTTCAATTATGACCAGCTAATCTGCATAATCCACAACGCTTAACG
* * *
59172326 TCGAATTTCTCCTTAATGTCCATTTCATTATGGATTCAGGATGATTACGGACGACCTTTTGAATT
131 TAGAATTTCTCCCTAATGTCCATTTCATTATGGATTCAGGATAATTACGGACGACCTTTTGAATT
* *
59172391 CCTACGCAACCCTTTGTTTAGGACAAGCTCGAAAGACGTCGGAAGCACCTCCAACATAGATAGGT
196 CCTACGCAACCCTTTGTCTAGGACAAGCTCGAAAGACGTCGGAAGCACCTCCAACATAGACAGGT
* * * * *
59172456 CAGGTAGGATGGGGAACTCATTCTCCCAGACACGCAACGTGCGCTTGAGGGTGTACACATCATCG
261 CAGATAGGACGGGGAACTCATTCTCCCAGACACACAACGTGCGCTTGAAGGTGTACACATCATCA
* * *
59172521 ACAAATTATTCAATATTGAGCAAGACTTTAGCATATGCTGTCACGACATGCTTAAATAGATAAAG
326 ACAAATTATTCAATATTGAGCAAGACTTTAGCACATGCTGCCACGACATGCGTAAATAGATAAAG
*
59172586 AAGTGTTTGGAACCTCTTGCAATCGCACCGTCTATTTCGGAGATCAACTCCATAGGACCTAGATA
391 AAGTGTTTGGAACCTCTTACAATCGCACCGTCTATTTCGGAGATCAACTCCATAGGACCTAGATA
* *
59172651 GTATACTGGGTCGACGATCGATGGTCTCTGTAACTCAAAATGGTTCAAGACATCGTGAATATACT
456 GTATACTGAGTCGACGATCGATGGTCTCTGTAACTCAAAACGGTTCAAGACATCGTGAATATACT
* *
59172716 TCTACATTCATCAACCTCACAATCCAACGGTTTGCAACCATTGCATTCTTAACATCTTCAATAAA
521 TCTACATTCATCAACCTCACAATCCAACGGTTTGCAACCATTGCATCCTTAACATCTTCAACAAA
*
59172781 CACGTGTTTCGCCTCCATCTGGTTGACTTGTTGCTGACCCATTCTTGGCATCAAGGTAGCCAACC
586 CACGTGTTCCGCCTCCATCTGGTTGACTTGTTGCTGACCCATTCTTGGCATCAAGGTAGCCAACC
59172846 TGTAGAATGTAGCCGAGAAGACAGATG
651 TGTAGAATGTAGCCGAGAAGACAGATG
* *
59172873 AAATTAGGTACAATGGATTACGTAAGCTTAATTCCTACCC-ATCGTGACAATTGTCCAATATGGT
1 AAATTAGGTACAATGGATTACATAAGCTCAATTCCTACCCGATCGTGACAATTGTCCAATATGGT
59172937 AGTTTCGCTGCGAGCATTTA-TTCCAATTATGACCAGCTAATCTGCATAATCCACAACGCTTAAC
66 AGTTTCGCTGCGAGCATTTACTT-CAATTATGACCAGCTAATCTGCATAATCCACAACGCTTAAC
* *
59173001 GTAGGATTTCTCCCTAATGTCCATTTCATTATGGATTCAGGATAATTGCGGACGACCTTTTGAAT
130 GTAGAATTTCTCCCTAATGTCCATTTCATTATGGATTCAGGATAATTACGGACGACCTTTTGAAT
59173066 TCCTACGCAACCCTTTGTCTAGGACAAGCTCGAAAGACGTCGGAAGCACCTCCAACATAGACAGG
195 TCCTACGCAACCCTTTGTCTAGGACAAGCTCGAAAGACGTCGGAAGCACCTCCAACATAGACAGG
*
59173131 TCAGATAGGACGGGGAACTCATTCTCCCAGACACACAACGTGCTCTTGAAGGTGTACACATCATC
260 TCAGATAGGACGGGGAACTCATTCTCCCAGACACACAACGTGCGCTTGAAGGTGTACACATCATC
* * *
59173196 AACAAATTGTTCAACT-TTGAGCAAGACTTTAGCACATGTTGCCACGACATGCGTAAATGGATAA
325 AACAAATTATTCAA-TATTGAGCAAGACTTTAGCACATGCTGCCACGACATGCGTAAATAGATAA
* *
59173260 AGAAGTGTTTGGAACCTTTTACAATCGCACCGTCTATTTCGGAGATCAACTTCATAGGACCTAGA
389 AGAAGTGTTTGGAACCTCTTACAATCGCACCGTCTATTTCGGAGATCAACTCCATAGGACCTAGA
* * * * *
59173325 TAGTATAAC-GAGTTGACGATCGATGGTCTCTGTAACTCGAAACGTTTCAAGTCATCTTGAATAT
454 TAGTAT-ACTGAGTCGACGATCGATGGTCTCTGTAACTCAAAACGGTTCAAGACATCGTGAATAT
* * * *
59173389 ACTTCTACATTCATCGACCTCACAATCCGACGGTTTGCAACTATTGCATCCTTGACATCTTCAAC
518 ACTTCTACATTCATCAACCTCACAATCCAACGGTTTGCAACCATTGCATCCTTAACATCTTCAAC
*
59173454 AAACACGTGTTCCGCCTCCATCTGGTTGACTTGTTGCTGACCTATTCTTGGCATCAAGGTAGCCA
583 AAACACGTGTTCCGCCTCCATCTGGTTGACTTGTTGCTGACCCATTCTTGGCATCAAGGTAGCCA
*
59173519 ACCTGTAGAATGTAGCCGAGAAGATAGATG
648 ACCTGTAGAATGTAGCCGAGAAGACAGATG
59173549 AAAT
1 AAAT
59173553 CGAAAGATGT
Statistics
Matches: 632, Mismatches: 45, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
675 2 0.00
676 590 0.93
677 40 0.06
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.28
Consensus pattern (677 bp):
AAATTAGGTACAATGGATTACATAAGCTCAATTCCTACCCGATCGTGACAATTGTCCAATATGGT
AGTTTCGCTGCGAGCATTTACTTCAATTATGACCAGCTAATCTGCATAATCCACAACGCTTAACG
TAGAATTTCTCCCTAATGTCCATTTCATTATGGATTCAGGATAATTACGGACGACCTTTTGAATT
CCTACGCAACCCTTTGTCTAGGACAAGCTCGAAAGACGTCGGAAGCACCTCCAACATAGACAGGT
CAGATAGGACGGGGAACTCATTCTCCCAGACACACAACGTGCGCTTGAAGGTGTACACATCATCA
ACAAATTATTCAATATTGAGCAAGACTTTAGCACATGCTGCCACGACATGCGTAAATAGATAAAG
AAGTGTTTGGAACCTCTTACAATCGCACCGTCTATTTCGGAGATCAACTCCATAGGACCTAGATA
GTATACTGAGTCGACGATCGATGGTCTCTGTAACTCAAAACGGTTCAAGACATCGTGAATATACT
TCTACATTCATCAACCTCACAATCCAACGGTTTGCAACCATTGCATCCTTAACATCTTCAACAAA
CACGTGTTCCGCCTCCATCTGGTTGACTTGTTGCTGACCCATTCTTGGCATCAAGGTAGCCAACC
TGTAGAATGTAGCCGAGAAGACAGATG
Found at i:59181261 original size:8 final size:8
Alignment explanation
Indices: 59181248--59181276 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
59181238 AGATACAAAC
59181248 TCTTTTTT
1 TCTTTTTT
59181256 TC-TTTTT
1 TCTTTTTT
59181263 TCTTTTTT
1 TCTTTTTT
59181271 TCTTTT
1 TCTTTT
59181277 CTGAAATGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (8 bp):
TCTTTTTT
Found at i:59181268 original size:15 final size:15
Alignment explanation
Indices: 59181248--59181276 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
59181238 AGATACAAAC
59181248 TCTTTTTTTCTTTTT
1 TCTTTTTTTCTTTTT
59181263 TCTTTTTTTCTTTT
1 TCTTTTTTTCTTTT
59181277 CTGAAATGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (15 bp):
TCTTTTTTTCTTTTT
Found at i:59182120 original size:22 final size:21
Alignment explanation
Indices: 59182090--59182164 Score: 71
Period size: 22 Copynumber: 3.4 Consensus size: 21
59182080 TAATACCCAG
*
59182090 ATAAA-AATAATAAAATAATA
1 ATAAACAATAACAAAATAATA
* *
59182110 ATAATACAATAGCAAAATAGTA
1 ATAA-ACAATAACAAAATAATA
*
59182132 GTAAAACAATAACAAACAGTAATA
1 AT-AAACAATAACAAA-A-TAATA
59182156 ATAAACAAT
1 ATAAACAAT
59182165 TGTAAAAAAT
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
20 4 0.09
21 1 0.02
22 23 0.53
23 10 0.23
24 5 0.12
ACGTcount: A:0.65, C:0.08, G:0.05, T:0.21
Consensus pattern (21 bp):
ATAAACAATAACAAAATAATA
Found at i:59183798 original size:21 final size:20
Alignment explanation
Indices: 59183774--59183817 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
59183764 CCGATTAATA
*
59183774 TAATTTTAATATTTT-AAGATT
1 TAATTATAAT-TTTTCAA-ATT
59183795 TAATTATAATTTTTCAAATT
1 TAATTATAATTTTTCAAATT
59183815 TAA
1 TAA
59183818 GAACCATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (20 bp):
TAATTATAATTTTTCAAATT
Found at i:59183923 original size:21 final size:21
Alignment explanation
Indices: 59183897--59183936 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
59183887 TAAGAAAGAA
59183897 CTCAAAATATAATATTTATTG
1 CTCAAAATATAATATTTATTG
*
59183918 CTCAAAATATAGTATTTAT
1 CTCAAAATATAATATTTAT
59183937 AGCATGATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.42, C:0.10, G:0.05, T:0.42
Consensus pattern (21 bp):
CTCAAAATATAATATTTATTG
Found at i:59187811 original size:5 final size:5
Alignment explanation
Indices: 59187801--59187839 Score: 69
Period size: 5 Copynumber: 7.8 Consensus size: 5
59187791 GAAGGAATTG
*
59187801 GATGA GATGA GATGA GATGA GATGA GATGA GATGG GATG
1 GATGA GATGA GATGA GATGA GATGA GATGA GATGA GATG
59187840 CAGTTCCTGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.36, C:0.00, G:0.44, T:0.21
Consensus pattern (5 bp):
GATGA
Found at i:59188217 original size:5 final size:5
Alignment explanation
Indices: 59188207--59188231 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
59188197 TTTTAAAAAA
59188207 TTATT TTATT TTATT TTATT TTATT
1 TTATT TTATT TTATT TTATT TTATT
59188232 GAAGTTGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:59190502 original size:18 final size:20
Alignment explanation
Indices: 59190461--59190502 Score: 52
Period size: 18 Copynumber: 2.2 Consensus size: 20
59190451 ATAAGATTGA
* *
59190461 AAAATTGAAGAGAAAATGAT
1 AAAATTGAAGAGAAAATAAG
59190481 AAAA-TGAA-AGAAAATAAG
1 AAAATTGAAGAGAAAATAAG
59190499 AAAA
1 AAAA
59190503 ATATATATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 12 0.60
19 4 0.20
20 4 0.20
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.14
Consensus pattern (20 bp):
AAAATTGAAGAGAAAATAAG
Found at i:59194403 original size:3 final size:3
Alignment explanation
Indices: 59194395--59194432 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
59194385 ATAATGCGAC
59194395 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
59194433 ATCTAAGTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:59194647 original size:3 final size:3
Alignment explanation
Indices: 59194641--59194795 Score: 61
Period size: 3 Copynumber: 52.7 Consensus size: 3
59194631 GTAATGAAAG
* *
59194641 ATA ATA ATA ATT ATA ATA ATA AT- ATCA ATA ATA AT- ATT ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA
* * * * ** * *
59194685 TTA ATA AGA A-A AAA ATA GTA ATA GCA TTA ATA ATA AT- TTA TATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA
* * * * * * *
59194729 ATA ATG TTA ATA GTA ATA A-A AGA ACA ATA A-A ACTT ATA ATA ACA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA
** *
59194773 AGG CTA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA AT
59194796 GATGATGATG
Statistics
Matches: 110, Mismatches: 33, Indels: 18
0.68 0.20 0.11
Matches are distributed among these distances:
2 11 0.10
3 94 0.85
4 5 0.05
ACGTcount: A:0.58, C:0.04, G:0.05, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:59201563 original size:16 final size:16
Alignment explanation
Indices: 59201542--59201610 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
59201532 TTTGGTTCGC
59201542 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
59201558 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
59201574 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
59201591 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
59201607 TGTA
1 TGTA
59201611 ATAGCTAATC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:59201588 original size:33 final size:32
Alignment explanation
Indices: 59201542--59201610 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
59201532 TTTGGTTCGC
59201542 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
59201574 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGTGTATTGGATTAGAGG
59201607 TGTA
1 TGTA
59201611 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 6 0.17
33 30 0.83
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGGATTAGAGG
Found at i:59201675 original size:44 final size:45
Alignment explanation
Indices: 59201591--59201681 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
59201581 GGATTAGAGG
* * *
59201591 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
59201636 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
59201680 TG
1 TG
59201682 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:59201863 original size:16 final size:16
Alignment explanation
Indices: 59201826--59201880 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
59201816 TTAATCATAT
*
59201826 TTAAACATA-ATTATAA
1 TTAAA-ATATATTTTAA
59201842 TT-AAATATATTTTAA
1 TTAAAATATATTTTAA
59201857 TTAAAATATATAATTTAA
1 TTAAAATATAT--TTTAA
59201875 -TAAAAT
1 TTAAAAT
59201881 TCTTAATAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 3 0.09
15 10 0.29
16 10 0.29
17 6 0.18
18 5 0.15
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
TTAAAATATATTTTAA
Found at i:59201873 original size:18 final size:18
Alignment explanation
Indices: 59201832--59201880 Score: 61
Period size: 16 Copynumber: 2.9 Consensus size: 18
59201822 ATATTTAAAC
59201832 ATAATTATAATT-AAATAT
1 ATAATT-TAATTAAAATAT
59201850 AT--TTTAATTAAAATAT
1 ATAATTTAATTAAAATAT
59201866 ATAATTTAA-TAAAAT
1 ATAATTTAATTAAAAT
59201881 TCTTAATAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
15 5 0.18
16 10 0.36
17 6 0.21
18 7 0.25
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
ATAATTTAATTAAAATAT
Found at i:59202111 original size:14 final size:15
Alignment explanation
Indices: 59202062--59202113 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
59202052 ATAAAATATA
59202062 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
59202077 TATTAAATATATTAT
1 AATTAAATATATTAT
59202092 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
59202105 AATTTAATA
1 AATTAAATA
59202114 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:59202222 original size:16 final size:17
Alignment explanation
Indices: 59202197--59202237 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
59202187 AAATAATTAA
59202197 AATT-AAATATAT-TTT
1 AATTAAAATATATATTT
59202212 AATTAAAATATATGATTT
1 AATTAAAATATAT-ATTT
59202230 AA-TAAAAT
1 AATTAAAAT
59202238 TTAAAATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 4 0.17
16 8 0.35
17 6 0.26
18 5 0.22
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (17 bp):
AATTAAAATATATATTT
Found at i:59202249 original size:120 final size:120
Alignment explanation
Indices: 59201829--59202238 Score: 702
Period size: 120 Copynumber: 3.4 Consensus size: 120
59201819 ATCATATTTA
*
59201829 AACATAATTATAATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATAATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
59201894 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
59201949 AACATAA-T-T-ATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATAATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
59202011 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
* *
59202066 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATAATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
* * *
59202131 TATTCTTATATGAATTTACTCAAATCATAATATATTATACTATAAAAGATAATTTT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA-ATT
* * *
59202187 AA-ATAATTAAAATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 AACATAATTATAATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
59202239 TAAAATAATT
Statistics
Matches: 277, Mismatches: 9, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
117 114 0.41
118 2 0.01
119 2 0.01
120 155 0.56
121 4 0.01
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (120 bp):
AACATAATTATAATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
Found at i:59208001 original size:13 final size:14
Alignment explanation
Indices: 59207983--59208023 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
59207973 TTTTCAAAGA
59207983 TATGGTTTAGGA-T
1 TATGGTTTAGGACT
*
59207996 TATGGTTTATGACT
1 TATGGTTTAGGACT
*
59208010 TACGGTTTA-GACT
1 TATGGTTTAGGACT
59208023 T
1 T
59208024 TAGGGGTGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 16 0.64
14 9 0.36
ACGTcount: A:0.22, C:0.07, G:0.24, T:0.46
Consensus pattern (14 bp):
TATGGTTTAGGACT
Found at i:59209469 original size:16 final size:16
Alignment explanation
Indices: 59209448--59209479 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
59209438 ACTTAGTAAT
59209448 TAAAAGATACAGTTAA
1 TAAAAGATACAGTTAA
59209464 TAAAAGATACAGTTAA
1 TAAAAGATACAGTTAA
59209480 GAAATAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.12, T:0.25
Consensus pattern (16 bp):
TAAAAGATACAGTTAA
Found at i:59210550 original size:47 final size:47
Alignment explanation
Indices: 59210481--59210574 Score: 143
Period size: 47 Copynumber: 2.0 Consensus size: 47
59210471 TGCTTCGATT
*
59210481 CCCCTTCCAAAAGATAATTTAGGGCTTGATTAATGCATATGGAGGTG
1 CCCCTTCCAAAAGATAATTTAGGACTTGATTAATGCATATGGAGGTG
* * * *
59210528 CCCCTTCTAAAATATAATTTAGGATTTGATTAATGCATGTGGAGGTG
1 CCCCTTCCAAAAGATAATTTAGGACTTGATTAATGCATATGGAGGTG
59210575 GTCTAGCGTT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (47 bp):
CCCCTTCCAAAAGATAATTTAGGACTTGATTAATGCATATGGAGGTG
Found at i:59211077 original size:9 final size:9
Alignment explanation
Indices: 59211063--59211532 Score: 176
Period size: 9 Copynumber: 51.6 Consensus size: 9
59211053 ATTAATATTA
*
59211063 TACATAAAT
1 TACATAACT
59211072 TACATAACT
1 TACATAACT
59211081 TA-ATTAA-T
1 TACA-TAACT
*
59211089 TA-AT-ATT
1 TACATAACT
59211096 ATACATAACT
1 -TACATAACT
59211106 TACATAACT
1 TACATAACT
59211115 TAC--AACT
1 TACATAACT
59211122 TAC--AACT
1 TACATAACT
*
59211129 TCCATAACT
1 TACATAACT
*
59211138 TACATTAATATT
1 TACA-T-A-ACT
*
59211150 ATACATAAAT
1 -TACATAACT
*
59211160 TACATAACG
1 TACATAACT
59211169 TA-ATTAA-T
1 TACA-TAACT
*
59211177 TA-AT-ATT
1 TACATAACT
*
59211184 ATACATAGCT
1 -TACATAACT
*
59211194 TACCTAACT
1 TACATAACT
59211203 TA-ATTAA-T
1 TACA-TAACT
*
59211211 TA-AT-ATT
1 TACATAACT
59211218 ATACATAACT
1 -TACATAACT
59211228 TAC--AACT
1 TACATAACT
59211235 TACATAACT
1 TACATAACT
*
59211244 TACATTAATAT
1 TACA-TAA-CT
*
59211255 TACACATAAAT
1 T--ACATAACT
59211266 TACATAACT
1 TACATAACT
*
59211275 TACATTAATATT
1 TACA-T-A-ACT
*
59211287 ATACATAAAT
1 -TACATAACT
59211297 TACATAACT
1 TACATAACT
59211306 TA-ATTAA-T
1 TACA-TAACT
*
59211314 TA-AT-ATT
1 TACATAACT
59211321 ATACATAACT
1 -TACATAACT
59211331 TAC--AACT
1 TACATAACT
59211338 TACATAACT
1 TACATAACT
*
59211347 TACATTAATATT
1 TACA-T-A-ACT
59211359 ATACATAACT
1 -TACATAACT
59211369 TACATAACT
1 TACATAACT
*
59211378 TACATTAATATT
1 TACA-T-A-ACT
*
59211390 ATACATAAAT
1 -TACATAACT
59211400 TACATAACT
1 TACATAACT
59211409 TA-ATTAA-T
1 TACA-TAACT
*
59211417 TA-AT-ATT
1 TACATAACT
59211424 ATACATAACT
1 -TACATAACT
59211434 TAC--AACT
1 TACATAACT
59211441 TACATAACT
1 TACATAACT
*
59211450 TACATTAATAT
1 TACA-TAA-CT
59211461 TACACATAACT
1 T--ACATAACT
59211472 TACATAACT
1 TACATAACT
59211481 TAC--AACT
1 TACATAACT
59211488 TACATAACT
1 TACATAACT
*
59211497 TACATTAATATT
1 TACA-T-A-ACT
*
59211509 ATACATAAAT
1 -TACATAACT
59211519 TACATAACT
1 TACATAACT
59211528 TACAT
1 TACAT
59211533 TAATACGACA
Statistics
Matches: 366, Mismatches: 32, Indels: 126
0.70 0.06 0.24
Matches are distributed among these distances:
6 5 0.01
7 51 0.14
8 33 0.09
9 181 0.49
10 30 0.08
11 19 0.05
12 21 0.06
13 26 0.07
ACGTcount: A:0.46, C:0.16, G:0.00, T:0.38
Consensus pattern (9 bp):
TACATAACT
Found at i:59211269 original size:31 final size:31
Alignment explanation
Indices: 59211234--59211484 Score: 241
Period size: 31 Copynumber: 7.5 Consensus size: 31
59211224 AACTTACAAC
59211234 TTACATAACTTACATTAATATTACACATAAA
1 TTACATAACTTACATTAATATTACACATAAA
*
59211265 TTACATAACTTACATTAATATTATACATAAA
1 TTACATAACTTACATTAATATTACACATAAA
* *
59211296 TTACATAACTTAATTAATTAATATTATACATAACTTACAA
1 TTACATAACTT-A--CATTAATA-T-TAC---ACATA-AA
* *
59211336 CTTACATAACTTACATTAATATTATACATAAC
1 -TTACATAACTTACATTAATATTACACATAAA
*
59211368 TTACATAACTTACATTAATATTATACATAAA
1 TTACATAACTTACATTAATATTACACATAAA
* *
59211399 TTACATAACTTAATTAATTAATATTATACATAACTTACAA
1 TTACATAACTT-A--CATTAATA-T-TAC---ACATA-AA
*
59211439 CTTACATAACTTACATTAATATTACACATAAC
1 -TTACATAACTTACATTAATATTACACATAAA
59211471 TTACATAACTTACA
1 TTACATAACTTACA
59211485 ACTTACATAA
Statistics
Matches: 185, Mismatches: 15, Indels: 40
0.77 0.06 0.17
Matches are distributed among these distances:
31 96 0.52
32 4 0.02
33 8 0.04
34 14 0.08
35 2 0.01
36 9 0.05
37 2 0.01
38 14 0.08
39 8 0.04
40 6 0.03
41 22 0.12
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.38
Consensus pattern (31 bp):
TTACATAACTTACATTAATATTACACATAAA
Found at i:59211332 original size:103 final size:103
Alignment explanation
Indices: 59211118--59211484 Score: 619
Period size: 103 Copynumber: 3.5 Consensus size: 103
59211108 CATAACTTAC
* *
59211118 AACTTACAACTTCCATAACTTACATTAATATTATACATAAATTACATAACGTAATTA-ATTAATA
1 AACTTACAACTTACATAACTTACATTAATATTACACATAAATTACATAAC----TTACATTAATA
** *
59211182 TTATACATAGCTTACCTAACTTAATTAATTAATATTATACAT
62 TTATACATAAATTACATAACTTAATTAATTAATATTATACAT
59211224 AACTTACAACTTACATAACTTACATTAATATTACACATAAATTACATAACTTACATTAATATTAT
1 AACTTACAACTTACATAACTTACATTAATATTACACATAAATTACATAACTTACATTAATATTAT
59211289 ACATAAATTACATAACTTAATTAATTAATATTATACAT
66 ACATAAATTACATAACTTAATTAATTAATATTATACAT
* *
59211327 AACTTACAACTTACATAACTTACATTAATATTATACATAACTTACATAACTTACATTAATATTAT
1 AACTTACAACTTACATAACTTACATTAATATTACACATAAATTACATAACTTACATTAATATTAT
59211392 ACATAAATTACATAACTTAATTAATTAATATTATACAT
66 ACATAAATTACATAACTTAATTAATTAATATTATACAT
*
59211430 AACTTACAACTTACATAACTTACATTAATATTACACATAACTTACATAACTTACA
1 AACTTACAACTTACATAACTTACATTAATATTACACATAAATTACATAACTTACA
59211485 ACTTACATAA
Statistics
Matches: 252, Mismatches: 8, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
102 3 0.01
103 201 0.80
106 48 0.19
ACGTcount: A:0.46, C:0.16, G:0.01, T:0.38
Consensus pattern (103 bp):
AACTTACAACTTACATAACTTACATTAATATTACACATAAATTACATAACTTACATTAATATTAT
ACATAAATTACATAACTTAATTAATTAATATTATACAT
Found at i:59211446 original size:16 final size:16
Alignment explanation
Indices: 59211425--59211500 Score: 86
Period size: 16 Copynumber: 4.8 Consensus size: 16
59211415 ATTAATATTA
59211425 TACATAACTTACAACT
1 TACATAACTTACAACT
59211441 TACATAACTTAC-A-T
1 TACATAACTTACAACT
** *
59211455 TA-ATATTACACATAACT
1 TACATA--ACTTACAACT
59211472 TACATAACTTACAACT
1 TACATAACTTACAACT
59211488 TACATAACTTACA
1 TACATAACTTACA
59211501 TTAATATTAT
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
13 3 0.06
14 3 0.06
15 4 0.08
16 33 0.67
17 3 0.06
18 3 0.06
ACGTcount: A:0.45, C:0.22, G:0.00, T:0.33
Consensus pattern (16 bp):
TACATAACTTACAACT
Found at i:59211484 original size:47 final size:47
Alignment explanation
Indices: 59211425--59211531 Score: 196
Period size: 47 Copynumber: 2.3 Consensus size: 47
59211415 ATTAATATTA
*
59211425 TACATAACTTACAACTTACATAACTTACATTAATATTACACATAACT
1 TACATAACTTACAACTTACATAACTTACATTAATATTACACATAAAT
*
59211472 TACATAACTTACAACTTACATAACTTACATTAATATTATACATAAAT
1 TACATAACTTACAACTTACATAACTTACATTAATATTACACATAAAT
59211519 TACATAACTTACA
1 TACATAACTTACA
59211532 TTAATACGAC
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 58 1.00
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.35
Consensus pattern (47 bp):
TACATAACTTACAACTTACATAACTTACATTAATATTACACATAAAT
Found at i:59211639 original size:19 final size:18
Alignment explanation
Indices: 59211615--59211650 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
59211605 CATTTTTAAT
59211615 ACATAACTTATATAATATG
1 ACATAACTTAT-TAATATG
59211634 ACATAACTTATTAATAT
1 ACATAACTTATTAATAT
59211651 ATATCATATG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.47, C:0.11, G:0.03, T:0.39
Consensus pattern (18 bp):
ACATAACTTATTAATATG
Found at i:59216855 original size:21 final size:21
Alignment explanation
Indices: 59216831--59216874 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
59216821 GAATCTTTAG
*
59216831 TATTTATTGTATCATTT-TATT
1 TATTTAAT-TATCATTTCTATT
*
59216852 TATTTAATTATCCTTTCTATT
1 TATTTAATTATCATTTCTATT
59216873 TA
1 TA
59216875 ATTAGGTCGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.25, C:0.09, G:0.02, T:0.64
Consensus pattern (21 bp):
TATTTAATTATCATTTCTATT
Found at i:59217813 original size:21 final size:21
Alignment explanation
Indices: 59217787--59217837 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
59217777 CTACAACTTA
* * *
59217787 AAGCAGATGCGGCAATAAGAG
1 AAGCAGAGGCAGCAACAAGAG
*
59217808 AAGCAGAGGCAGCAACGAGAG
1 AAGCAGAGGCAGCAACAAGAG
*
59217829 AAGCCGAGG
1 AAGCAGAGG
59217838 TTCAACGAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.41, C:0.18, G:0.37, T:0.04
Consensus pattern (21 bp):
AAGCAGAGGCAGCAACAAGAG
Found at i:59217827 original size:87 final size:87
Alignment explanation
Indices: 59217721--59217904 Score: 244
Period size: 87 Copynumber: 2.1 Consensus size: 87
59217711 ACACAACTTA
* * * *
59217721 AAGCGGAGGCAACATCGAGAGAAGCTAAGGTTCAA-AAAAGATATGAAGAACTCCAGCTACAACT
1 AAGCAGAGGCAACAACGAGAGAAGCCAAGGTTCAACAAAAG-TATGAAGAACTCCAGCAACAACT
* *
59217785 TAAAGCAGATGCGGCAATAAGAG
65 TAAAGCAGATGCGACAACAAGAG
* * * *
59217808 AAGCAGAGGCAGCAACGAGAGAAGCCGAGGTTCAACGAAAGTATGAAGAACTCCAGCAACAGCTT
1 AAGCAGAGGCAACAACGAGAGAAGCCAAGGTTCAACAAAAGTATGAAGAACTCCAGCAACAACTT
* *
59217873 AAAGCAGATGCGACAGCGAGAG
66 AAAGCAGATGCGACAACAAGAG
59217895 AAGCAGAGGC
1 AAGCAGAGGC
59217905 TAAAGCGAGG
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
87 80 0.95
88 4 0.05
ACGTcount: A:0.42, C:0.19, G:0.28, T:0.11
Consensus pattern (87 bp):
AAGCAGAGGCAACAACGAGAGAAGCCAAGGTTCAACAAAAGTATGAAGAACTCCAGCAACAACTT
AAAGCAGATGCGACAACAAGAG
Found at i:59217911 original size:21 final size:21
Alignment explanation
Indices: 59217887--59217926 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
59217877 CAGATGCGAC
59217887 AGCGAGAGAAGCAGAGGCTAA
1 AGCGAGAGAAGCAGAGGCTAA
* *
59217908 AGCGAGGGAAGTAGAGGCT
1 AGCGAGAGAAGCAGAGGCT
59217927 GCGGCGAGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.12, G:0.42, T:0.07
Consensus pattern (21 bp):
AGCGAGAGAAGCAGAGGCTAA
Found at i:59218296 original size:43 final size:42
Alignment explanation
Indices: 59218248--59218636 Score: 521
Period size: 43 Copynumber: 9.1 Consensus size: 42
59218238 CAAAATTAGC
* *
59218248 GGCGTTTTTTGCATAAGCGCCACTAAAGACCATGGTCTATAGT
1 GGCGTTTTTTG-TTAAGCGCCGCTAAAGACCATGGTCTATAGT
** *
59218291 GGCGTTTTTTCCCTAAGCGCCGCGAAAGACCATGGTCTATAGT
1 GGCGTTTTTT-GTTAAGCGCCGCTAAAGACCATGGTCTATAGT
* * * *
59218334 GGCATTTTTCGCCTAAGCGCCGCTAAAGACCATGGTCTGTAGT
1 GGCGTTTTTTG-TTAAGCGCCGCTAAAGACCATGGTCTATAGT
* *
59218377 GGCGTTTGTTGGTTAAGCGCCGCTAAAGACCATGGTCTGTAGT
1 GGCGTTT-TTTGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
* *
59218420 GGCGTTTGTTGGTTAAGCGCCGCTAAAGACCATGGTCTGTAGT
1 GGCGTTT-TTTGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
*
59218463 GGCGTTTGTTGGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
1 GGCGTTT-TTTGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
* *
59218506 GGCGTTTTTTGGTAAGCGCCGCTAAAGACCACGGTCTATAGT
1 GGCGTTTTTTGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
*
59218548 GGCGTTTTTT-TTAAGCGCCGCTAAAGACCACGGTCTATAGT
1 GGCGTTTTTTGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
* * *
59218589 GGCGTTTTTAT-TTAAGCACCGCTAAAGAACATGGTCTATAGC
1 GGCGTTTTT-TGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
59218631 GGCGTT
1 GGCGTT
59218637 GTAAAAAAAA
Statistics
Matches: 321, Mismatches: 21, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
41 39 0.12
42 76 0.24
43 203 0.63
44 3 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.30
Consensus pattern (42 bp):
GGCGTTTTTTGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
Found at i:59221105 original size:51 final size:52
Alignment explanation
Indices: 59221042--59221170 Score: 185
Period size: 52 Copynumber: 2.5 Consensus size: 52
59221032 CGGATACTCG
*
59221042 GTGGCC-TACACATAGTACCACCCTTGT-ATCCAAAGCTA-CCTTCTTCACAAA
1 GTGGCCAT-CACATAGTACCACACTTGTGA-CCAAAGCTATCCTTCTTCACAAA
*
59221093 GTGG-CATTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAA
1 GTGGCCA-TCACATAGTACCACACTTGTGACCAAAGCTATCCTTCTTCACAAA
59221145 GTGGCCATCACATAGTACCACACTTG
1 GTGGCCATCACATAGTACCACACTTG
59221171 AGTCACTAGT
Statistics
Matches: 71, Mismatches: 2, Indels: 9
0.87 0.02 0.11
Matches are distributed among these distances:
50 1 0.01
51 31 0.44
52 37 0.52
53 2 0.03
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.26
Consensus pattern (52 bp):
GTGGCCATCACATAGTACCACACTTGTGACCAAAGCTATCCTTCTTCACAAA
Found at i:59225608 original size:52 final size:51
Alignment explanation
Indices: 59225495--59225623 Score: 170
Period size: 52 Copynumber: 2.5 Consensus size: 51
59225485 CGGATACCCG
* *
59225495 GTGGCCTACACATAGTACCAC-CTTTGTAACCAAAGCTACCTTCTTCACAAA
1 GTGGCCTTCACAAAGTACCACAC-TTGTAACCAAAGCTACCTTCTTCACAAA
* * *
59225546 GTGGCATTCACAAAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAA
1 GTGGCCTTCACAAAGTACCACACTTGTAACCAAAGCTA-CCTTCTTCACAAA
* *
59225598 GTGGCCTTCACACAGTATCACACTTG
1 GTGGCCTTCACAAAGTACCACACTTG
59225624 AGTCACTAGT
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
51 32 0.47
52 36 0.53
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.26
Consensus pattern (51 bp):
GTGGCCTTCACAAAGTACCACACTTGTAACCAAAGCTACCTTCTTCACAAA
Found at i:59226004 original size:17 final size:17
Alignment explanation
Indices: 59225972--59226006 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
59225962 TTATTAAAAG
59225972 GTTAAGTTGGTAAATAA
1 GTTAAGTTGGTAAATAA
59225989 GTTAA-TTGGTATAATAA
1 GTTAAGTTGGTA-AATAA
59226006 G
1 G
59226007 ACAAAATAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.40, C:0.00, G:0.23, T:0.37
Consensus pattern (17 bp):
GTTAAGTTGGTAAATAA
Done.