Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 199 of 207
Found at i:59927567 original size:15 final size:14
Alignment explanation
Indices: 59927546--59927581 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
59927536 ATAATTCTTA
*
59927546 ATAATTATCTTAAT
1 ATAATTATCCTAAT
59927560 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
59927575 ATAATTA
1 ATAATTA
59927582 AAATAGAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:59928189 original size:16 final size:16
Alignment explanation
Indices: 59928145--59928190 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
59928135 ATTTTTTCTT
*
59928145 TTTTATTTATTT-TGA
1 TTTTATTTATTTATTA
59928160 TTTTGATTTATTTATTA
1 TTTT-ATTTATTTATTA
59928177 TTTATATTT-TTTAT
1 TTT-TATTTATTTAT
59928191 GCTTTAGGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
15 4 0.15
16 13 0.48
17 9 0.33
18 1 0.04
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.74
Consensus pattern (16 bp):
TTTTATTTATTTATTA
Found at i:59929220 original size:5 final size:5
Alignment explanation
Indices: 59929210--59929269 Score: 54
Period size: 5 Copynumber: 12.2 Consensus size: 5
59929200 AGTAATAAAT
* * *
59929210 AATAA AATAA AATAA AGTAATA AATAA AGT-A AATAA AGT-A AATAA AATAA
1 AATAA AATAA AATAA AAT-A-A AATAA AATAA AATAA AATAA AATAA AATAA
59929260 AAT-A AATAA A
1 AATAA AATAA A
59929270 TAATAAAAAT
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
4 10 0.23
5 29 0.66
6 2 0.05
7 3 0.07
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.22
Consensus pattern (5 bp):
AATAA
Found at i:59929237 original size:4 final size:4
Alignment explanation
Indices: 59929203--59929276 Score: 64
Period size: 4 Copynumber: 17.5 Consensus size: 4
59929193 CCAAATAAGT
59929203 AATA AAT- AATAA AATAA AATA AAGT- AATA AATA AAGTA AATA AAGTA
1 AATA AATA AAT-A AAT-A AATA AA-TA AATA AATA AA-TA AATA AA-TA
59929250 AATAA AATAA AATA AATA AAT- AATA AA
1 AAT-A AAT-A AATA AATA AATA AATA AA
59929277 AATTAGGTTG
Statistics
Matches: 62, Mismatches: 0, Indels: 16
0.79 0.00 0.21
Matches are distributed among these distances:
3 7 0.11
4 29 0.47
5 26 0.42
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:59929244 original size:9 final size:9
Alignment explanation
Indices: 59929230--59929272 Score: 61
Period size: 9 Copynumber: 4.8 Consensus size: 9
59929220 AATAAAGTAA
59929230 TAAATAAAG
1 TAAATAAAG
59929239 TAAATAAAG
1 TAAATAAAG
*
59929248 TAAATAAAA
1 TAAATAAAG
59929257 TAAAATAAA-
1 T-AAATAAAG
59929266 TAAATAA
1 TAAATAA
59929273 TAAAAATTAG
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
8 6 0.19
9 19 0.59
10 7 0.22
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (9 bp):
TAAATAAAG
Found at i:59933191 original size:15 final size:14
Alignment explanation
Indices: 59933170--59933205 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
59933160 ATAATCCTTA
*
59933170 ATAATTATCTTAAT
1 ATAATTATCCTAAT
59933184 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
59933199 ATAATTA
1 ATAATTA
59933206 AAATAGAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:59939019 original size:11 final size:11
Alignment explanation
Indices: 59938976--59939013 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
59938966 TTTGGAAGCG
59938976 AAAT-GAGCGAA
1 AAATCGAGC-AA
59938987 AAA-CGAGCAA
1 AAATCGAGCAA
59938997 AAATCGAGCAA
1 AAATCGAGCAA
59939008 AAATCG
1 AAATCG
59939014 GACAAATAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 5 0.20
11 20 0.80
ACGTcount: A:0.55, C:0.16, G:0.21, T:0.08
Consensus pattern (11 bp):
AAATCGAGCAA
Found at i:59939092 original size:30 final size:30
Alignment explanation
Indices: 59939057--59939114 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
59939047 CTTAGCATTT
* * *
59939057 CCACACAGGTTGGGCACACGCCCGTGTGAG
1 CCACACAGGCTGGACACACGCCCATGTGAG
*
59939087 CCACACTGGCTGGACACACGCCCATGTG
1 CCACACAGGCTGGACACACGCCCATGTG
59939115 CCAGCTCGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.21, C:0.36, G:0.29, T:0.14
Consensus pattern (30 bp):
CCACACAGGCTGGACACACGCCCATGTGAG
Found at i:59945425 original size:46 final size:46
Alignment explanation
Indices: 59945196--59945426 Score: 381
Period size: 46 Copynumber: 5.0 Consensus size: 46
59945186 ACATTGTTAT
* * *
59945196 AACTCAGTATGGTTTTCTTCACGGAAATACCATACCTACTTTTCAT
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
* * *
59945242 AACTTAGTATGGTTTTCTTCATTGAAACACCATACCTACTTTTCGC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
**
59945288 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCGT
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
*
59945334 AACTCAGTATGGTTTTCTTTACTGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
59945380 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
59945426 A
1 A
59945427 TTTTGCCATG
Statistics
Matches: 172, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 172 1.00
ACGTcount: A:0.28, C:0.26, G:0.10, T:0.37
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
Found at i:59950867 original size:46 final size:46
Alignment explanation
Indices: 59950791--59950942 Score: 247
Period size: 46 Copynumber: 3.4 Consensus size: 46
59950781 TGATAAGCGA
*
59950791 TGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAAG
1 TGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAG
* *
59950837 TGAGAAAGGGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAG
1 TGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAG
59950883 TGACAAAGTGATAAGTGGTAGCC-TAGCTACACTTATCTGATC-AG
1 TGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAG
*
59950927 GGAC-AAGTGATAAGTG
1 TGACAAAGTGATAAGTG
59950943 ATCATACGTA
Statistics
Matches: 100, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
43 12 0.12
44 5 0.05
45 19 0.19
46 64 0.64
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (46 bp):
TGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAG
Found at i:59953582 original size:3 final size:3
Alignment explanation
Indices: 59953571--59953611 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
59953561 AATGCAAATG
59953571 ATA AT- ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
59953612 TAAGTAACAA
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:59958375 original size:37 final size:37
Alignment explanation
Indices: 59958334--59958482 Score: 235
Period size: 37 Copynumber: 4.0 Consensus size: 37
59958324 GCTGAAGCTA
*
59958334 CCACTTATCACTTTATCACTTGATCAAATAAGTGTAG
1 CCACTTATCACTTTGTCACTTGATCAAATAAGTGTAG
* * *
59958371 CCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAA
1 CCACTTATCACTTTGTCACTTGATCAAATAAGTGTAG
** *
59958408 CCACTTATCACTTTGTTTCTTGATCAGATAAGTGTAG
1 CCACTTATCACTTTGTCACTTGATCAAATAAGTGTAG
59958445 CCACTTATCACTTTGTCACTTGATCAAATAAGTGTAG
1 CCACTTATCACTTTGTCACTTGATCAAATAAGTGTAG
59958482 C
1 C
59958483 TAAAACTACC
Statistics
Matches: 103, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.37
Consensus pattern (37 bp):
CCACTTATCACTTTGTCACTTGATCAAATAAGTGTAG
Found at i:59965779 original size:46 final size:46
Alignment explanation
Indices: 59965729--59965904 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
59965719 TGATTGAGCA
59965729 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
59965775 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
59965820 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
59965868 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
59965905 GGGTTACATG
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:59965885 original size:93 final size:93
Alignment explanation
Indices: 59965726--59965897 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
59965716 GGATGATTGA
*
59965726 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
59965791 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
59965819 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
59965883 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
59965898 CTTATGGGGG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:59967343 original size:17 final size:17
Alignment explanation
Indices: 59967318--59967350 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
59967308 CGCTTGACAC
*
59967318 TATAGATATTTAAAAAT
1 TATAAATATTTAAAAAT
59967335 TATAAATATTTAAAAA
1 TATAAATATTTAAAAA
59967351 AGAGTAATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (17 bp):
TATAAATATTTAAAAAT
Found at i:59977469 original size:43 final size:42
Alignment explanation
Indices: 59977422--59977566 Score: 150
Period size: 43 Copynumber: 3.4 Consensus size: 42
59977412 AGACTAAGAG
*
59977422 CTTTAGCGGCGTTTTTAAT-AGAACCGCCGCTATAGATT-GGTGT
1 CTTTAGCGGCGTTTTT-ATGA-AAGCGCCGCTATAGATTAGG-GT
* *
59977465 CTTTAGCGGCGTTTTTGTTGAAAGCGCCGTTATAGATTAGGGT
1 CTTTAGCGGCGTTTTT-ATGAAAGCGCCGCTATAGATTAGGGT
* * * * *
59977508 CTGTAGCGGCGTTTTTTATGTAAGCGCCGCTATAGATCATGGC
1 CTTTAGCGGCG-TTTTTATGAAAGCGCCGCTATAGATTAGGGT
*
59977551 CTTTAGCGGCGCTTTT
1 CTTTAGCGGCGTTTTT
59977567 CCCAAAAACG
Statistics
Matches: 86, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
42 4 0.05
43 74 0.86
44 8 0.09
ACGTcount: A:0.18, C:0.19, G:0.28, T:0.36
Consensus pattern (42 bp):
CTTTAGCGGCGTTTTTATGAAAGCGCCGCTATAGATTAGGGT
Found at i:59977579 original size:43 final size:43
Alignment explanation
Indices: 59977551--59977751 Score: 176
Period size: 43 Copynumber: 4.6 Consensus size: 43
59977541 AGATCATGGC
59977551 CTTTAGCGGCGCTTTTCCCAAAAACGCCGCAATAGACCCTGAT
1 CTTTAGCGGCGCTTTTCCCAAAAACGCCGCAATAGACCCTGAT
* ** *
59977594 CTATAGCGGCATTTTTCCCACAAACGCCGCAATAGACCCTGAT
1 CTTTAGCGGCGCTTTTCCCAAAAACGCCGCAATAGACCCTGAT
* * ** * * *
59977637 CTTTAGCGGCGCTTCTGCCGCAAGCGCCACTAA-AGACCCGGAT
1 CTTTAGCGGCGCTTTTCCCAAAAACGCCGC-AATAGACCCTGAT
* * * *
59977680 CTATAGCGGCGCTTAT-CCAGAAAATGCCGCTAA-ATACCCTTG-T
1 CTTTAGCGGCGCTTTTCCCA-AAAACGCCGC-AATAGACCC-TGAT
*
59977723 CTATATAGCGGCGCTTTTACCAAAAACGC
1 CT-T-TAGCGGCGCTTTTCCCAAAAACGC
59977752 TGCTAAATTT
Statistics
Matches: 127, Mismatches: 25, Indels: 10
0.78 0.15 0.06
Matches are distributed among these distances:
42 2 0.02
43 101 0.80
44 3 0.02
45 18 0.14
46 3 0.02
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.23
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTTCCCAAAAACGCCGCAATAGACCCTGAT
Found at i:59978200 original size:21 final size:21
Alignment explanation
Indices: 59978063--59978197 Score: 171
Period size: 21 Copynumber: 6.4 Consensus size: 21
59978053 TTTGACGCTG
*
59978063 CTCTGCTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGTAGC
* *
59978084 CTCTACTTCCCTCGCTTTAGC
1 CTCTGCTTCCCTCGCTGTAGC
*
59978105 CTCTGCTTCCCTCGCTTTAGC
1 CTCTGCTTCCCTCGCTGTAGC
*
59978126 CTCTGCTTCCCTCGCTTTAGC
1 CTCTGCTTCCCTCGCTGTAGC
*
59978147 CTCTGCTTCCCTTGCTGTAGC
1 CTCTGCTTCCCTCGCTGTAGC
* * * **
59978168 CTGTTCTTCTCTCGCTGCCGC
1 CTCTGCTTCCCTCGCTGTAGC
59978189 CTCTGCTTC
1 CTCTGCTTC
59978198 TCTTGCTGCC
Statistics
Matches: 100, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 100 1.00
ACGTcount: A:0.04, C:0.43, G:0.16, T:0.37
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGTAGC
Found at i:59978205 original size:21 final size:21
Alignment explanation
Indices: 59978145--59978216 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
59978135 CCTCGCTTTA
* **
59978145 GCCTCTGCTTCCCTTGCTGTA
1 GCCTCTGCTTCTCTTGCTGCC
* * *
59978166 GCCTGTTCTTCTCTCGCTGCC
1 GCCTCTGCTTCTCTTGCTGCC
59978187 GCCTCTGCTTCTCTTGCTGCC
1 GCCTCTGCTTCTCTTGCTGCC
* *
59978208 ACATCTGCT
1 GCCTCTGCT
59978217 CTAAGCTGCT
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.04, C:0.40, G:0.18, T:0.38
Consensus pattern (21 bp):
GCCTCTGCTTCTCTTGCTGCC
Found at i:59978352 original size:66 final size:66
Alignment explanation
Indices: 59978227--59978357 Score: 174
Period size: 66 Copynumber: 2.0 Consensus size: 66
59978217 CTAAGCTGCT
* * * *
59978227 GCTGGAGTTCTTCATACTTTCATTGAACCTCAGCTTCTCCCGCTGCTGCATCTGTTTTAAGTTGT
1 GCTGGAGTTCTTCATACTTTCATTGAACATCAGCTTCTCCCGATGCTGCATCCGCTTTAAGTTGT
59978292 A
66 A
* * * *
59978293 GCTGGAGTTCTTCATATCTTT-TTTGAACATCAGCTTCTCTCGATGTTGCCTCCGCTTTAAGTTG
1 GCTGGAGTTCTTCATA-CTTTCATTGAACATCAGCTTCTCCCGATGCTGCATCCGCTTTAAGTTG
59978357 T
65 T
59978358 GTAATTTGCT
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
66 52 0.93
67 4 0.07
ACGTcount: A:0.16, C:0.24, G:0.18, T:0.41
Consensus pattern (66 bp):
GCTGGAGTTCTTCATACTTTCATTGAACATCAGCTTCTCCCGATGCTGCATCCGCTTTAAGTTGT
A
Found at i:59980015 original size:16 final size:17
Alignment explanation
Indices: 59979994--59980026 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
59979984 ATTATAATCC
59979994 GTAAATATCTTC-ATTT
1 GTAAATATCTTCTATTT
59980010 GTAAATATCTTCTATTT
1 GTAAATATCTTCTATTT
59980027 CTTTGCGTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.30, C:0.12, G:0.06, T:0.52
Consensus pattern (17 bp):
GTAAATATCTTCTATTT
Found at i:59981746 original size:16 final size:16
Alignment explanation
Indices: 59981725--59981755 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
59981715 GTTAAGCTAC
59981725 GTAAGTTATGTATTAT
1 GTAAGTTATGTATTAT
*
59981741 GTAAGTTATTTATTA
1 GTAAGTTATGTATTA
59981756 CCCAAATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (16 bp):
GTAAGTTATGTATTAT
Found at i:59981787 original size:25 final size:25
Alignment explanation
Indices: 59981736--59981791 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
59981726 TAAGTTATGT
* *
59981736 ATTATGTAAGTTATTTATTACCCAA
1 ATTATGTAAGTTATGTATTACCAAA
* **
59981761 ATTATGTAAGTTGTGTATTATGAAA
1 ATTATGTAAGTTATGTATTACCAAA
59981786 ATTATG
1 ATTATG
59981792 CTATGTAAGT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.36, C:0.05, G:0.14, T:0.45
Consensus pattern (25 bp):
ATTATGTAAGTTATGTATTACCAAA
Found at i:59981805 original size:9 final size:9
Alignment explanation
Indices: 59981793--59981990 Score: 69
Period size: 9 Copynumber: 22.7 Consensus size: 9
59981783 AAAATTATGC
59981793 TATGTAAGT
1 TATGTAAGT
59981802 TATGTAAGT
1 TATGTAAGT
* **
59981811 CACATAAGT
1 TATGTAAGT
59981820 TATGTAAG-
1 TATGTAAGT
* * *
59981828 -AAGTTATT
1 TATGTAAGT
59981836 TATGTAAGT
1 TATGTAAGT
*
59981845 TAT-TTA-T
1 TATGTAAGT
* *
59981852 TATGAAAAT
1 TATGTAAGT
*
59981861 TAAGTAAGT
1 TATGTAAGT
*
59981870 TATGTAATT
1 TATGTAAGT
*
59981879 TACG--A-T
1 TATGTAAGT
*
59981885 TAATGTAAAT
1 T-ATGTAAGT
*
59981895 TATGTACGT
1 TATGTAAGT
59981904 TATGTAAG-
1 TATGTAAGT
59981912 T-TGTAAGT
1 TATGTAAGT
*
59981920 TATGTATA-A
1 TATGTA-AGT
59981929 TAT-TAA-T
1 TATGTAAGT
**
59981936 TAACTAAGT
1 TATGTAAGT
* *
59981945 TATGTCATT
1 TATGTAAGT
*
59981954 TATGTATCGTAT
1 TATGTA-AG--T
59981966 TAATGTAAGT
1 T-ATGTAAGT
*
59981976 TATGTAATT
1 TATGTAAGT
59981985 TATGTA
1 TATGTA
59981991 TATTAACTAA
Statistics
Matches: 135, Mismatches: 37, Indels: 34
0.66 0.18 0.17
Matches are distributed among these distances:
6 2 0.01
7 20 0.15
8 10 0.07
9 90 0.67
10 5 0.04
12 3 0.02
13 5 0.04
ACGTcount: A:0.36, C:0.04, G:0.16, T:0.44
Consensus pattern (9 bp):
TATGTAAGT
Found at i:59981873 original size:34 final size:34
Alignment explanation
Indices: 59981835--59981913 Score: 88
Period size: 34 Copynumber: 2.3 Consensus size: 34
59981825 AAGAAGTTAT
**
59981835 TTATGTAAGTTATTTATT-ATGAAAATTAAGTAAG
1 TTATGTAAGTTA-CGATTAATGAAAATTAAGTAAG
* * * *
59981869 TTATGTAATTTACGATTAATGTAAATTATGTACG
1 TTATGTAAGTTACGATTAATGAAAATTAAGTAAG
59981903 TTATGTAAGTT
1 TTATGTAAGTT
59981914 GTAAGTTATG
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
33 3 0.08
34 34 0.92
ACGTcount: A:0.37, C:0.03, G:0.15, T:0.46
Consensus pattern (34 bp):
TTATGTAAGTTACGATTAATGAAAATTAAGTAAG
Found at i:59981925 original size:34 final size:33
Alignment explanation
Indices: 59981850--59981925 Score: 82
Period size: 34 Copynumber: 2.2 Consensus size: 33
59981840 TAAGTTATTT
* *
59981850 ATTATGAAAATTAAGTAAGTTATGTAATTTACG
1 ATTATGTAAATTAAGTAAGTTATGTAATTTAAG
* *
59981883 ATTAATGTAAATTATGTACGTTATGTAAGTTGTAAG
1 ATT-ATGTAAATTAAGTAAGTTATGTAA-TT-TAAG
59981919 -TTATGTA
1 ATTATGTA
59981926 TAATATTAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
33 3 0.08
34 26 0.72
35 4 0.11
36 3 0.08
ACGTcount: A:0.38, C:0.03, G:0.17, T:0.42
Consensus pattern (33 bp):
ATTATGTAAATTAAGTAAGTTATGTAATTTAAG
Found at i:59981957 original size:34 final size:34
Alignment explanation
Indices: 59981913--59982065 Score: 174
Period size: 34 Copynumber: 4.7 Consensus size: 34
59981903 TTATGTAAGT
* *
59981913 TGTAAGTTATGTATAATATTAATTAACTAAGTTA
1 TGTAATTTATGTATAATATTAATTAATTAAGTTA
* ** *
59981947 TGTCATTTATGTATCGTATTAA-T--GTAAGTTA
1 TGTAATTTATGTATAATATTAATTAATTAAGTTA
* *
59981978 TGTAATTTATG--T-ATATTAACTAATTAATTTA
1 TGTAATTTATGTATAATATTAATTAATTAAGTTA
*
59982009 TGTAAGTTATGTATAATATTAATTAATTAAGTTA
1 TGTAATTTATGTATAATATTAATTAATTAAGTTA
*
59982043 TGTCATTTATGTATAATATTAAT
1 TGTAATTTATGTATAATATTAAT
59982066 GTAAGTTATG
Statistics
Matches: 99, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
28 6 0.06
29 2 0.02
31 33 0.33
33 2 0.02
34 56 0.57
ACGTcount: A:0.37, C:0.03, G:0.11, T:0.48
Consensus pattern (34 bp):
TGTAATTTATGTATAATATTAATTAATTAAGTTA
Found at i:59981978 original size:31 final size:31
Alignment explanation
Indices: 59981905--59982229 Score: 319
Period size: 31 Copynumber: 10.5 Consensus size: 31
59981895 TATGTACGTT
*
59981905 ATGTAAG-T-TGTAAGTTATGTATAATATTA
1 ATGTAAGTTATGTAATTTATGTATAATATTA
* * **
59981934 ATTAACTAAGTTATGTCATTTATGTATCGTATTA
1 A-T--GTAAGTTATGTAATTTATGTATAATATTA
* *
59981968 ATGTAAGTTATGTAATTTATGTATATTAACTA
1 ATGTAAGTTATGTAATTTATGTATAAT-ATTA
* *
59982000 AT-TAATTTATGTAAGTTATGTATAATATTA
1 ATGTAAGTTATGTAATTTATGTATAATATTA
* *
59982030 ATTAATTAAGTTATGTCATTTATGTATAATATTA
1 A-T--GTAAGTTATGTAATTTATGTATAATATTA
* *
59982064 ATGTAAGTTATGT-A--TA-ATATTA-ATTA
1 ATGTAAGTTATGTAATTTATGTATAATATTA
*
59982090 AT-TAAGTTATGTCATTTATGTATAATATTA
1 ATGTAAGTTATGTAATTTATGTATAATATTA
*
59982120 ATTAACTAAGTTATGTAATTTATGTATAATATTA
1 A-T--GTAAGTTATGTAATTTATGTATAATATTA
* * *
59982154 ATGTAAGTAATGTAATTTATGTATATTAACTA
1 ATGTAAGTTATGTAATTTATGTATAAT-ATTA
59982186 AT-TAAGTTATGTAATTTATGTATAATATTA
1 ATGTAAGTTATGTAATTTATGTATAATATTA
59982216 ATGTAAGTTATGTA
1 ATGTAAGTTATGTA
59982230 TAATATTTAA
Statistics
Matches: 245, Mismatches: 30, Indels: 40
0.78 0.10 0.13
Matches are distributed among these distances:
25 10 0.04
26 7 0.03
27 4 0.02
28 4 0.02
29 5 0.02
30 16 0.07
31 109 0.44
32 14 0.06
33 4 0.02
34 72 0.29
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.47
Consensus pattern (31 bp):
ATGTAAGTTATGTAATTTATGTATAATATTA
Found at i:59982025 original size:96 final size:96
Alignment explanation
Indices: 59981913--59982217 Score: 478
Period size: 96 Copynumber: 3.2 Consensus size: 96
59981903 TTATGTAAGT
**
59981913 TGTAAGTTATGTATAATATTAATTAACTAAGTTATGTCATTTATGTATCGTATTAATGTAAGTTA
1 TGTAAGTTATGTATAATATTAATTAACTAAGTTATGTCATTTATGTATAATATTAATGTAAGTTA
*
59981978 TGTAATTTATGTATATTAACTAATTAATTTA
66 TGTAATTTATGTATATTAACTAATTAAGTTA
*
59982009 TGTAAGTTATGTATAATATTAATTAATTAAGTTATGTCATTTATGTATAATATTAATGTAAGTTA
1 TGTAAGTTATGTATAATATTAATTAACTAAGTTATGTCATTTATGTATAATATTAATGTAAGTTA
*
59982074 TGT-A--TA---ATATTAATTAATTAAGTTA
66 TGTAATTTATGTATATTAACTAATTAAGTTA
* * * *
59982099 TGTCATTTATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATAATATTAATGTAAGTAA
1 TGTAAGTTATGTATAATATTAATTAACTAAGTTATGTCATTTATGTATAATATTAATGTAAGTTA
59982164 TGTAATTTATGTATATTAACTAATTAAGTTA
66 TGTAATTTATGTATATTAACTAATTAAGTTA
*
59982195 TGTAATTTATGTATAATATTAAT
1 TGTAAGTTATGTATAATATTAAT
59982218 GTAAGTTATG
Statistics
Matches: 191, Mismatches: 12, Indels: 12
0.89 0.06 0.06
Matches are distributed among these distances:
90 80 0.42
91 1 0.01
93 4 0.02
95 1 0.01
96 105 0.55
ACGTcount: A:0.39, C:0.03, G:0.11, T:0.48
Consensus pattern (96 bp):
TGTAAGTTATGTATAATATTAATTAACTAAGTTATGTCATTTATGTATAATATTAATGTAAGTTA
TGTAATTTATGTATATTAACTAATTAAGTTA
Found at i:59982077 original size:152 final size:151
Alignment explanation
Indices: 59981913--59982236 Score: 483
Period size: 152 Copynumber: 2.1 Consensus size: 151
59981903 TTATGTAAGT
** *
59981913 TGTAAGTTATGTATAATATTAATTAACTAAGTTATGTCATTTATGTATCGTATTAA-T-GTAAGT
1 TGTAAGTTATGTATAATATTAATTAACTAAGTTATGTCATTTATGTATAATATTAATTACTAAGT
* * * *
59981976 TATGTAATTTATGTATATTAACTAAT-TAATTTATGTAAGTTATGTATAATATTAATTAATTAAG
66 TATGTAATTTATGTATAAT-ACTAATGTAAGTAATGTAAGTTATG--T-ATATTAACTAATTAAG
*
59982040 TTATGTCATTTATGTATAATATTAA
127 TTATGTAATTTATGTATAATATTAA
*
59982065 TGTAAGTTATGTATAATATTAATTAATTAAGTTATGTCATTTATGTATAATATTAATTAACTAAG
1 TGTAAGTTATGTATAATATTAATTAACTAAGTTATGTCATTTATGTATAATATTAATT-ACTAAG
* *
59982130 TTATGTAATTTATGTATAATATTAATGTAAGTAATGTAATTTATGTATATTAACTAATTAAGTTA
65 TTATGTAATTTATGTATAATACTAATGTAAGTAATGTAAGTTATGTATATTAACTAATTAAGTTA
59982195 TGTAATTTATGTATAATATTAA
130 TGTAATTTATGTATAATATTAA
59982217 TGTAAGTTATGTATAATATT
1 TGTAAGTTATGTATAATATT
59982237 TAAATCGATC
Statistics
Matches: 157, Mismatches: 11, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
152 112 0.71
153 2 0.01
154 5 0.03
155 38 0.24
ACGTcount: A:0.39, C:0.02, G:0.11, T:0.48
Consensus pattern (151 bp):
TGTAAGTTATGTATAATATTAATTAACTAAGTTATGTCATTTATGTATAATATTAATTACTAAGT
TATGTAATTTATGTATAATACTAATGTAAGTAATGTAAGTTATGTATATTAACTAATTAAGTTAT
GTAATTTATGTATAATATTAA
Found at i:59982114 original size:34 final size:34
Alignment explanation
Indices: 59982064--59982217 Score: 212
Period size: 34 Copynumber: 4.7 Consensus size: 34
59982054 TATAATATTA
*
59982064 ATGTAAGTTATGTATAATATTAATTAATTAAGTT
1 ATGTAATTTATGTATAATATTAATTAATTAAGTT
* *
59982098 ATGTCATTTATGTATAATATTAATTAACTAAGTT
1 ATGTAATTTATGTATAATATTAATTAATTAAGTT
* *
59982132 ATGTAATTTATGTATAATATTAA-T--GTAAGTA
1 ATGTAATTTATGTATAATATTAATTAATTAAGTT
*
59982163 ATGTAATTTATG--T-ATATTAACTAATTAAGTT
1 ATGTAATTTATGTATAATATTAATTAATTAAGTT
59982194 ATGTAATTTATGTATAATATTAAT
1 ATGTAATTTATGTATAATATTAAT
59982218 GTAAGTTATG
Statistics
Matches: 105, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
28 7 0.07
29 2 0.02
31 34 0.32
33 2 0.02
34 60 0.57
ACGTcount: A:0.40, C:0.02, G:0.10, T:0.47
Consensus pattern (34 bp):
ATGTAATTTATGTATAATATTAATTAATTAAGTT
Found at i:59982166 original size:22 final size:21
Alignment explanation
Indices: 59982130--59982236 Score: 80
Period size: 22 Copynumber: 5.1 Consensus size: 21
59982120 ATTAACTAAG
59982130 TTATGTAATTTATGTATAATA
1 TTATGTAATTTATGTATAATA
* *
59982151 TTAATGTAAGTAATG--TAAT-
1 TT-ATGTAATTTATGTATAATA
* * *
59982170 TTATGTATATTAACT-AATTAA-G
1 TTATGTA-ATTTA-TGTA-TAATA
59982192 TTATGTAATTTATGTATAATA
1 TTATGTAATTTATGTATAATA
*
59982213 TTAATGTAAGTTATGTATAATA
1 TT-ATGTAATTTATGTATAATA
59982235 TT
1 TT
59982237 TAAATCGATC
Statistics
Matches: 69, Mismatches: 7, Indels: 19
0.73 0.07 0.20
Matches are distributed among these distances:
18 5 0.07
19 6 0.09
20 9 0.13
21 9 0.13
22 40 0.58
ACGTcount: A:0.39, C:0.01, G:0.11, T:0.49
Consensus pattern (21 bp):
TTATGTAATTTATGTATAATA
Found at i:59982848 original size:24 final size:24
Alignment explanation
Indices: 59982816--59982868 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
59982806 AGTATTTTAT
59982816 AATATAATATTAATTTTAGATACA
1 AATATAATATTAATTTTAGATACA
* *
59982840 AATATAATATTAATTTTAGTTAGA
1 AATATAATATTAATTTTAGATACA
59982864 AATAT
1 AATAT
59982869 TATACAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.49, C:0.02, G:0.06, T:0.43
Consensus pattern (24 bp):
AATATAATATTAATTTTAGATACA
Found at i:59983519 original size:33 final size:33
Alignment explanation
Indices: 59983472--59983539 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
59983462 ATATACATAT
*
59983472 ATTCATACCTAACACTAATCTCATTTAACTCGA
1 ATTCATACCCAACACTAATCTCATTTAACTCGA
*
59983505 ATTCATACCCAACACTCATCTCATTTAACTCGA
1 ATTCATACCCAACACTAATCTCATTTAACTCGA
59983538 AT
1 AT
59983540 AACATAGATG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.35, C:0.29, G:0.03, T:0.32
Consensus pattern (33 bp):
ATTCATACCCAACACTAATCTCATTTAACTCGA
Found at i:59983793 original size:15 final size:14
Alignment explanation
Indices: 59983761--59983800 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
59983751 AATTGGGAAA
*
59983761 TTGGGGAAAATAAT
1 TTGGGGAAAATAAC
59983775 TTGGGGAAGAATAAC
1 TTGGGGAA-AATAAC
*
59983790 TTGGGGGAAAT
1 TTGGGGAAAAT
59983801 TGGGGGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.38, C:0.03, G:0.35, T:0.25
Consensus pattern (14 bp):
TTGGGGAAAATAAC
Found at i:59983804 original size:25 final size:22
Alignment explanation
Indices: 59983775--59983831 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 22
59983765 GGAAAATAAT
*
59983775 TTGGGGAAGAATAACTTGGGGGAAA
1 TTGGGGAA-AAGAACTT--GGGAAA
*
59983800 TTGGGGGAAAAGAAGTTGGGAAA
1 TT-GGGGAAAAGAACTTGGGAAA
59983823 TTGGGGAAA
1 TTGGGGAAA
59983832 TGAAATCGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
22 7 0.24
23 8 0.28
25 8 0.28
26 6 0.21
ACGTcount: A:0.37, C:0.02, G:0.42, T:0.19
Consensus pattern (22 bp):
TTGGGGAAAAGAACTTGGGAAA
Found at i:59983844 original size:23 final size:23
Alignment explanation
Indices: 59983794--59983847 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
59983784 AATAACTTGG
* *
59983794 GGGAAATTGGGGGAAAAGAAGTT
1 GGGAAATTGGGGGAAAAGAAATC
*
59983817 GGGAAATT-GGGGAAATGAAATC
1 GGGAAATTGGGGGAAAAGAAATC
59983839 GTGGAAATT
1 G-GGAAATT
59983848 TGACTTGGGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 12 0.44
23 15 0.56
ACGTcount: A:0.39, C:0.02, G:0.39, T:0.20
Consensus pattern (23 bp):
GGGAAATTGGGGGAAAAGAAATC
Found at i:59985565 original size:12 final size:12
Alignment explanation
Indices: 59985548--59985579 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
59985538 TAATAACTAT
59985548 ATATATATATCC
1 ATATATATATCC
59985560 ATATATATATCC
1 ATATATATATCC
59985572 ATATATAT
1 ATATATAT
59985580 CAAAAATATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (12 bp):
ATATATATATCC
Found at i:59986412 original size:41 final size:40
Alignment explanation
Indices: 59986365--59986709 Score: 188
Period size: 41 Copynumber: 8.4 Consensus size: 40
59986355 GCGCTTCGGC
* * * *
59986365 AAAAACGCCGCTAAAGGTTA-ATACATTCGCGGCGCTTAGAT
1 AAAAACGCCGCTAAA-GATAGAGA-ATTAGCGGCGCATAGAT
*
59986406 AAAAACGCCGCTAAAGATAGGAGAATTAGCGGCGCATATAT
1 AAAAACGCCGCTAAAGATA-GAGAATTAGCGGCGCATAGAT
* ** * * **
59986447 AAAAACGCCGCTAAAAACCCGAGCATTAGCGGTGCATAGGC
1 AAAAACGCCGCTAAAGA-TAGAGAATTAGCGGCGCATAGAT
* * ** * * *
59986488 GAAAACGCCGCTATAGACCCGTAGCATTAGCGGCGCTTAGAC
1 AAAAACGCCGCTAAAGA-TAG-AGAATTAGCGGCGCATAGAT
* * * * * *
59986530 GAAAACGCTGCTAAAGACTCGGAGCATTAGCGGCGCTTAGAC
1 AAAAACGCCGCTAAAGA-T-AGAGAATTAGCGGCGCATAGAT
* * ** * * *
59986572 GAAAACGCCGCTATAGACCCGAGCATTAGCGGCGCTTAGAC
1 AAAAACGCCGCTAAAGA-TAGAGAATTAGCGGCGCATAGAT
* * * * *
59986613 AAAAACGCCGCTATAGATCCGAGCATTAGCGGCGCTTAGAC
1 AAAAACGCCGCTAAAGAT-AGAGAATTAGCGGCGCATAGAT
* * ** * * *
59986654 AAAAACACCGCTATAGACCCGAGCATTAGCGGCGCTTAGAC
1 AAAAACGCCGCTAAAGA-TAGAGAATTAGCGGCGCATAGAT
59986695 AAAAACGCCGCTAAA
1 AAAAACGCCGCTAAA
59986710 TGTTTAAAAA
Statistics
Matches: 264, Mismatches: 33, Indels: 14
0.85 0.11 0.05
Matches are distributed among these distances:
40 3 0.01
41 189 0.72
42 71 0.27
43 1 0.00
ACGTcount: A:0.34, C:0.26, G:0.24, T:0.16
Consensus pattern (40 bp):
AAAAACGCCGCTAAAGATAGAGAATTAGCGGCGCATAGAT
Found at i:59986497 original size:82 final size:82
Alignment explanation
Indices: 59986388--59986709 Score: 428
Period size: 82 Copynumber: 3.9 Consensus size: 82
59986378 AAGGTTAATA
* ** * *** * * * *
59986388 CATTCGCGGCGCTTAGATAAAAACGCCGCTAAAGATAGGAGAATTAGCGGCGCATATATAAAAAC
1 CATTAGCGGCGCTTAGACGAAAACGCCGCTATAGACCCGAGCATTAGCGGCGCTTAGACAAAAAC
*
59986453 GCCGCTAAAAACCCGAG
66 GCCGCTAAAGACCCGAG
* * * *
59986470 CATTAGCGGTGCATAGGCGAAAACGCCGCTATAGACCCGTAGCATTAGCGGCGCTTAGACGAAAA
1 CATTAGCGGCGCTTAGACGAAAACGCCGCTATAGACCCG-AGCATTAGCGGCGCTTAGACAAAAA
* *
59986535 CGCTGCTAAAGACTCGGAG
65 CGCCGCTAAAGAC-CCGAG
59986554 CATTAGCGGCGCTTAGACGAAAACGCCGCTATAGACCCGAGCATTAGCGGCGCTTAGACAAAAAC
1 CATTAGCGGCGCTTAGACGAAAACGCCGCTATAGACCCGAGCATTAGCGGCGCTTAGACAAAAAC
* *
59986619 GCCGCTATAGATCCGAG
66 GCCGCTAAAGACCCGAG
* *
59986636 CATTAGCGGCGCTTAGACAAAAACACCGCTATAGACCCGAGCATTAGCGGCGCTTAGACAAAAAC
1 CATTAGCGGCGCTTAGACGAAAACGCCGCTATAGACCCGAGCATTAGCGGCGCTTAGACAAAAAC
59986701 GCCGCTAAA
66 GCCGCTAAA
59986710 TGTTTAAAAA
Statistics
Matches: 209, Mismatches: 29, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
82 104 0.50
83 65 0.31
84 40 0.19
ACGTcount: A:0.33, C:0.26, G:0.25, T:0.16
Consensus pattern (82 bp):
CATTAGCGGCGCTTAGACGAAAACGCCGCTATAGACCCGAGCATTAGCGGCGCTTAGACAAAAAC
GCCGCTAAAGACCCGAG
Found at i:59986667 original size:166 final size:165
Alignment explanation
Indices: 59986348--59986709 Score: 447
Period size: 166 Copynumber: 2.2 Consensus size: 165
59986338 TTTTGTTACT
* * * ** *** * *
59986348 ATTAGCAGCGCTTCGGCAAAAACGCCGCTAAAGGTTAATA-CATTCGCGGCGCTTAGATAAAAAC
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGACTCGGAGCATTAGCGGCGCTTAGACAAAAAC
* * * *
59986412 GCCGCTAAAGATAGGAGAATTAGCGGCGCATATATAAAAACGCCGCTAAAAACCCGAGCATTAGC
66 GCCGCTAAAGACACGAGAATTAGCGGCGCATAGACAAAAACGCCGCTAAAAACCCGAGCATTAGC
* * * *
59986477 GGTGCATAGGCGAAAACGCCGCTATAGACCCGTAGC
131 GGCGCATAGACAAAAACACCGCTATAGACCCG-AGC
* * *
59986513 ATTAGCGGCGCTTAGACGAAAACGCTGCTAAAGACTCGGAGCATTAGCGGCGCTTAGACGAAAAC
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGACTCGGAGCATTAGCGGCGCTTAGACAAAAAC
* * * * * * *
59986578 GCCGCTATAGACCCGAGCATTAGCGGCGCTTAGACAAAAACGCCGCTATAGATCCGAGCATTAGC
66 GCCGCTAAAGACACGAGAATTAGCGGCGCATAGACAAAAACGCCGCTAAAAACCCGAGCATTAGC
*
59986643 GGCGCTTAGACAAAAACACCGCTATAGACCCGAGC
131 GGCGCATAGACAAAAACACCGCTATAGACCCGAGC
59986678 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAA
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAA
59986710 TGTTTAAAAA
Statistics
Matches: 165, Mismatches: 31, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
165 63 0.38
166 102 0.62
ACGTcount: A:0.33, C:0.26, G:0.25, T:0.16
Consensus pattern (165 bp):
ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGACTCGGAGCATTAGCGGCGCTTAGACAAAAAC
GCCGCTAAAGACACGAGAATTAGCGGCGCATAGACAAAAACGCCGCTAAAAACCCGAGCATTAGC
GGCGCATAGACAAAAACACCGCTATAGACCCGAGC
Found at i:59986884 original size:40 final size:40
Alignment explanation
Indices: 59986775--59986884 Score: 116
Period size: 40 Copynumber: 2.8 Consensus size: 40
59986765 TTTATAAAAA
* *
59986775 GCCGCTAATTC-CTATTTTTAGTGGCGCTTCCGTATAAAC
1 GCCGCTAATGCTCTATTTTTAGTGGCGCTTTCGTATAAAC
* ** * * *
59986814 GCCGCTGATGCTCTACCTTTAGCGGCGCTTTGGCTA-AATC
1 GCCGCTAATGCTCTATTTTTAGTGGCGCTTTCG-TATAAAC
*
59986854 GCCGCTAATGCTCTATTTTTTGTGGCGCTTT
1 GCCGCTAATGCTCTATTTTTAGTGGCGCTTT
59986885 TGTTCCAAAC
Statistics
Matches: 56, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
39 9 0.16
40 45 0.80
41 2 0.04
ACGTcount: A:0.15, C:0.26, G:0.22, T:0.36
Consensus pattern (40 bp):
GCCGCTAATGCTCTATTTTTAGTGGCGCTTTCGTATAAAC
Found at i:60003875 original size:21 final size:21
Alignment explanation
Indices: 60003833--60003880 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
60003823 CATCCTTATC
* *
60003833 TCCTCCACCCTCACCTGTTAG
1 TCCTCCACCCCCACCTGCTAG
* *
60003854 TTCTCCACCCCCAGCTGCTAG
1 TCCTCCACCCCCACCTGCTAG
60003875 TCCTCC
1 TCCTCC
60003881 GCCACAGTCG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.12, C:0.50, G:0.10, T:0.27
Consensus pattern (21 bp):
TCCTCCACCCCCACCTGCTAG
Found at i:60013447 original size:550 final size:551
Alignment explanation
Indices: 60012356--60013451 Score: 2185
Period size: 550 Copynumber: 2.0 Consensus size: 551
60012346 GTTGCAGCAG
60012356 TGCATGAACCTGGACAGTAGACTAACTGCATGCATGAGGTCAGGTTTGGTTGCTGTTAAGTAGAG
1 TGCATGAACCTGGACAGTAGACTAACTGCATGCATGAGGTCAGGTTTGGTTGCTGTTAAGTAGAG
60012421 CAAGCAACCAATCAAGCTGGTCAATTTCTCCCCCATAGCTAGTGGTGTACTCACTGGTTTACAAA
66 CAAGCAACCAATCAAGCTGGTCAATTTCTCCCCCATAGCTAGTGGTGTACTCACTGGTTTACAAA
60012486 TTTCCATCTGAAATTTAGTGAGAATCTTCATCGCAAAAGCATGCTGACTGATAAAAATTCCTTGA
131 TTTCCATCTGAAATTTAGTGAGAATCTTCATCGCAAAAGCATGCTGACTGATAAAAATTCCTTGA
60012551 TCAGACTGGTTTACTTCCATACCAAGGAAGTAAGTCATGATTCCCAAGTCTGTCATATCAAACAT
196 TCAGACTGGTTTACTTCCATACCAAGGAAGTAAGTCATGATTCCCAAGTCTGTCATATCAAACAT
60012616 GTCTTGCATTTTTTCTTTGAACTCTTGAATCAAATCGATCCTGCTTCCAATCACCAATAAATCAT
261 GTCTTGCATTTTTTCTTTGAACTCTTGAATCAAATCGATCCTGCTTCCAATCACCAATAAATCAT
60012681 CCACATAAATTGAGACAATCAGCAATGTTTCATCTTTAAACCTTTTTACAAACAAAGTTGGCTCA
326 CCACATAAATTGAGACAATCAGCAATGTTTCATCTTTAAACCTTTTTACAAACAAAGTTGGCTCA
60012746 CTCAAGCTTTTCTCGAAATTGAGCCTAGATAGGTAAGCATCTATCCTGTCATACCAGGCTCGAGG
391 CTCAAGCTTTTCTCGAAATTGAGCCTAGATAGGTAAGCATCTATCCTGTCATACCAGGCTCGAGG
60012811 AGCTTGTTTCAGTCCATAGAGTGCCTTCTTTAGCCTATAAACTTTGTCCTCCTTTTCTTGGACTT
456 AGCTTGTTTCAGTCCATAGAGTGCCTTCTTTAGCCTATAAACTTTGTCCTCCTTTTCTTGGACTT
60012876 TAAAACCATCAGACTGTTCAACATATGCTTT
521 TAAAACCATCAGACTGTTCAACATATGCTTT
60012907 TGCATGAACCTGGACAGTAGACTAACTGCATGCATGAGGTCAGGTTTGGTTGCTGTTAAGTAGAG
1 TGCATGAACCTGGACAGTAGACTAACTGCATGCATGAGGTCAGGTTTGGTTGCTGTTAAGTAGAG
60012972 CAAGCAACCAATCAAGCTGGTCAATTTCTCCCCCATAGCTAGTGGTGTACTCACTGGTTTACAAA
66 CAAGCAACCAATCAAGCTGGTCAATTTCTCCCCCATAGCTAGTGGTGTACTCACTGGTTTACAAA
60013037 TTTCCATCTGAAATTTAGTGAGAATCTTCATCGCAAAAGCATGCTGACTGATAAAAATTCCTTGA
131 TTTCCATCTGAAATTTAGTGAGAATCTTCATCGCAAAAGCATGCTGACTGATAAAAATTCCTTGA
60013102 TCAGACTGGTTTACTTCCATACCAAGGAAGTAAGTCATGATTCCCAAGTCTGTCATATCAAACAT
196 TCAGACTGGTTTACTTCCATACCAAGGAAGTAAGTCATGATTCCCAAGTCTGTCATATCAAACAT
60013167 GTCTTGCA-TTTTTCTTTGAACTCTTGAATCAAATCGATCCTGCTTCCAATCACCAATAAATCAT
261 GTCTTGCATTTTTTCTTTGAACTCTTGAATCAAATCGATCCTGCTTCCAATCACCAATAAATCAT
60013231 CCACATAAATTGAGACAATCAGCAATGTTTCATCTTTAAACCTTTTTACAAACAAAGTTGGCTCA
326 CCACATAAATTGAGACAATCAGCAATGTTTCATCTTTAAACCTTTTTACAAACAAAGTTGGCTCA
60013296 CTCAAGCTTTTCTCGAAATTGAGCCTAGATAGGTAAGCATCTATCCTGTCATACCAGGCTCGAGG
391 CTCAAGCTTTTCTCGAAATTGAGCCTAGATAGGTAAGCATCTATCCTGTCATACCAGGCTCGAGG
60013361 AGCTTGTTTCAGTCCATAGAGTGCCTTCTTTAGCCTATAAACTTTGTCCTCCTTTTCTTGGACTT
456 AGCTTGTTTCAGTCCATAGAGTGCCTTCTTTAGCCTATAAACTTTGTCCTCCTTTTCTTGGACTT
60013426 TAAAACCATCAGACTGTTCAACATAT
521 TAAAACCATCAGACTGTTCAACATAT
60013452 ATCTCTTCCT
Statistics
Matches: 545, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
550 277 0.51
551 268 0.49
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.32
Consensus pattern (551 bp):
TGCATGAACCTGGACAGTAGACTAACTGCATGCATGAGGTCAGGTTTGGTTGCTGTTAAGTAGAG
CAAGCAACCAATCAAGCTGGTCAATTTCTCCCCCATAGCTAGTGGTGTACTCACTGGTTTACAAA
TTTCCATCTGAAATTTAGTGAGAATCTTCATCGCAAAAGCATGCTGACTGATAAAAATTCCTTGA
TCAGACTGGTTTACTTCCATACCAAGGAAGTAAGTCATGATTCCCAAGTCTGTCATATCAAACAT
GTCTTGCATTTTTTCTTTGAACTCTTGAATCAAATCGATCCTGCTTCCAATCACCAATAAATCAT
CCACATAAATTGAGACAATCAGCAATGTTTCATCTTTAAACCTTTTTACAAACAAAGTTGGCTCA
CTCAAGCTTTTCTCGAAATTGAGCCTAGATAGGTAAGCATCTATCCTGTCATACCAGGCTCGAGG
AGCTTGTTTCAGTCCATAGAGTGCCTTCTTTAGCCTATAAACTTTGTCCTCCTTTTCTTGGACTT
TAAAACCATCAGACTGTTCAACATATGCTTT
Found at i:60015194 original size:42 final size:42
Alignment explanation
Indices: 60015102--60015197 Score: 102
Period size: 42 Copynumber: 2.3 Consensus size: 42
60015092 CCGAAGGCTG
* * * *
60015102 AATAGAAACTCATGAGAGCTAAACAAAAACTCATAAGGGTTG
1 AATAGAAGCTCATAAGAGCTAAACAAAAACCCATAAGGGTTA
*** * * *
60015144 AGCGGAAGCTCGTAAGAGCTGAACGAAAACCCATAAGGGTTA
1 AATAGAAGCTCATAAGAGCTAAACAAAAACCCATAAGGGTTA
60015186 AATAGAAGCTCA
1 AATAGAAGCTCA
60015198 ATGGAGCTGA
Statistics
Matches: 40, Mismatches: 14, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.44, C:0.17, G:0.23, T:0.17
Consensus pattern (42 bp):
AATAGAAGCTCATAAGAGCTAAACAAAAACCCATAAGGGTTA
Found at i:60017592 original size:34 final size:35
Alignment explanation
Indices: 60017548--60017614 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
60017538 CAGTAAAATA
*
60017548 TTTTCCGTAAAATGATTT-CGGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
* *
60017582 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTT
60017615 CTGGTGTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.31, C:0.09, G:0.15, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
Found at i:60019989 original size:10 final size:10
Alignment explanation
Indices: 60019975--60020145 Score: 77
Period size: 10 Copynumber: 17.4 Consensus size: 10
60019965 AAAAAATATG
60019975 AAAATTTATA
1 AAAATTTATA
*
60019985 TAAATTTATA
1 AAAATTTATA
60019995 AAAA-TTA-A
1 AAAATTTATA
* *
60020003 AAAAATCATA
1 AAAATTTATA
60020013 AAAATTTAT-
1 AAAATTTATA
* *
60020022 AAAAGTAATA
1 AAAATTTATA
** *
60020032 AAAACATATTT
1 AAAATTTA-TA
60020043 AAAATATT-TA
1 AAAAT-TTATA
60020053 AAAATTTATA
1 AAAATTTATA
** *
60020063 AAAACGTATT
1 AAAATTTATA
60020073 AAAATTCTATA
1 AAAATT-TATA
*
60020084 AAAA-TCAT-
1 AAAATTTATA
*
60020092 AAAATTATAAA
1 AAAATT-TATA
** *
60020103 AAAAAGTATT
1 AAAATTTATA
* *
60020113 AAAATTGACA
1 AAAATTTATA
* *
60020123 TAAACTTATA
1 AAAATTTATA
60020133 AAAA-TTATA
1 AAAATTTATA
60020142 AAAA
1 AAAA
60020146 CAATATATAC
Statistics
Matches: 114, Mismatches: 37, Indels: 21
0.66 0.22 0.12
Matches are distributed among these distances:
8 9 0.08
9 26 0.23
10 62 0.54
11 16 0.14
12 1 0.01
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.32
Consensus pattern (10 bp):
AAAATTTATA
Found at i:60020025 original size:19 final size:19
Alignment explanation
Indices: 60019962--60020104 Score: 86
Period size: 19 Copynumber: 7.5 Consensus size: 19
60019952 TCGTGACAAG
*
60019962 TTTA-AAAAAT-ATGAAAA
1 TTTATAAAAATCATAAAAA
* *
60019979 TTTATATAAATTTATAAAAA
1 TTTATA-AAAATCATAAAAA
*
60019999 -TTAAAAAAATCATAAAAA
1 TTTATAAAAATCATAAAAA
* *
60020017 TTTATAAAAGTAATAAAAACA
1 TTTATAAAAATCAT-AAAA-A
*
60020038 TATT-TAAAATAT-TTAAAAA
1 T-TTATAAAA-ATCATAAAAA
*
60020057 TTTATAAAAA-CGTATTAAAA
1 TTTATAAAAATC--ATAAAAA
60020077 TTCTATAAAAATCAT-AAAA
1 TT-TATAAAAATCATAAAAA
60020096 -TTATAAAAA
1 TTTATAAAAA
60020105 AAAGTATTAA
Statistics
Matches: 100, Mismatches: 12, Indels: 28
0.71 0.09 0.20
Matches are distributed among these distances:
17 12 0.12
18 16 0.16
19 29 0.29
20 23 0.23
21 16 0.16
22 4 0.04
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (19 bp):
TTTATAAAAATCATAAAAA
Found at i:60020034 original size:28 final size:27
Alignment explanation
Indices: 60019986--60020039 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
60019976 AAATTTATAT
*
60019986 AAATTTATAAAAATTAAAAAAATCATAA
1 AAATTTATAAAAAGTAAAAAAA-CATAA
60020014 AAATTTAT-AAAAGTAATAAAAACATA
1 AAATTTATAAAAAGTAA-AAAAACATA
60020040 TTTAAAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 11 0.46
28 13 0.54
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.28
Consensus pattern (27 bp):
AAATTTATAAAAAGTAAAAAAACATAA
Found at i:60020064 original size:31 final size:31
Alignment explanation
Indices: 60020011--60020095 Score: 86
Period size: 31 Copynumber: 2.8 Consensus size: 31
60020001 AAAAAAATCA
60020011 TAAAA-ATTTATAAAAGTAATAAAAACATATT
1 TAAAATATTTATAAAAGTAATAAAAACATA-T
* * *
60020042 TAAAATATTTA-AAAATTTATAAAAACGTAT
1 TAAAATATTTATAAAAGTAATAAAAACATAT
* * *
60020072 TAAAAT-TCTATAAAAATCATAAAA
1 TAAAATATTTATAAAAGTAATAAAA
60020096 TTATAAAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
29 3 0.07
30 18 0.39
31 20 0.43
32 5 0.11
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (31 bp):
TAAAATATTTATAAAAGTAATAAAAACATAT
Found at i:60020104 original size:9 final size:9
Alignment explanation
Indices: 60019964--60020145 Score: 71
Period size: 9 Copynumber: 18.7 Consensus size: 9
60019954 GTGACAAGTT
*
60019964 TAAAAAATA
1 TAAAAATTA
*
60019973 TGAAAATTTA
1 T-AAAAATTA
*
60019983 TATAAATTTA
1 TA-AAAATTA
60019993 TAAAAATTA
1 TAAAAATTA
* *
60020002 AAAAAATCA
1 TAAAAATTA
60020011 TAAAAATTTA
1 TAAAAA-TTA
* *
60020021 TAAAAGTAA
1 TAAAAATTA
*
60020030 TAAAAACATATT
1 T-AAAA-AT-TA
60020042 TAAAATATT-
1 TAAAA-ATTA
60020051 TAAAAATTTA
1 TAAAAA-TTA
*
60020061 TAAAAACGTA
1 TAAAAA-TTA
*
60020071 TTAAAATTCTA
1 -TAAAAAT-TA
*
60020082 TAAAAATCA
1 TAAAAATTA
60020091 T-AAAATTA
1 TAAAAATTA
*
60020099 TAAAAAAAAGTA
1 T---AAAAATTA
*
60020111 TTAAAATTGA
1 TAAAAATT-A
* *
60020121 CATAAACTTA
1 TA-AAAATTA
60020131 TAAAAATTA
1 TAAAAATTA
60020140 TAAAAA
1 TAAAAA
60020146 CAATATATAC
Statistics
Matches: 129, Mismatches: 28, Indels: 32
0.68 0.15 0.17
Matches are distributed among these distances:
8 8 0.06
9 49 0.38
10 45 0.35
11 19 0.15
12 8 0.06
ACGTcount: A:0.62, C:0.04, G:0.03, T:0.32
Consensus pattern (9 bp):
TAAAAATTA
Found at i:60020146 original size:19 final size:19
Alignment explanation
Indices: 60019964--60020145 Score: 95
Period size: 20 Copynumber: 9.3 Consensus size: 19
60019954 GTGACAAGTT
* *
60019964 TAAAAAATATGAAAATTTA
1 TAAAAATTATAAAAATTTA
*
60019983 TATAAATTTATAAAAA-TTA
1 TA-AAAATTATAAAAATTTA
* *
60020002 AAAAAATCATAAAAATTTA
1 TAAAAATTATAAAAATTTA
* *
60020021 TAAAAGTAATAAAAACATATT-
1 TAAAAATTAT-AAAA-AT-TTA
60020042 TAAAATATT-TAAAAATTTA
1 TAAAA-ATTATAAAAATTTA
* *
60020061 TAAAAACGTATTAAAATTCTA
1 TAAAAA-TTATAAAAATT-TA
*
60020082 TAAAAATCAT-AAAATTATAA
1 TAAAAATTATAAAAATT-T-A
* * * *
60020102 AAAAAAGTATTAAAATTGA
1 TAAAAATTATAAAAATTTA
* *
60020121 CATAAACTTATAAAAA-TTA
1 TA-AAAATTATAAAAATTTA
60020140 TAAAAA
1 TAAAAA
60020146 CAATATATAC
Statistics
Matches: 123, Mismatches: 27, Indels: 27
0.69 0.15 0.15
Matches are distributed among these distances:
18 17 0.14
19 36 0.29
20 45 0.37
21 22 0.18
22 3 0.02
ACGTcount: A:0.62, C:0.04, G:0.03, T:0.32
Consensus pattern (19 bp):
TAAAAATTATAAAAATTTA
Found at i:60020152 original size:20 final size:20
Alignment explanation
Indices: 60020051--60020152 Score: 59
Period size: 19 Copynumber: 5.1 Consensus size: 20
60020041 TTAAAATATT
*
60020051 TAAAAATTTATAAAAAC-GTA
1 TAAAAA-TTATAAAAACAATA
* * *
60020071 TTAAAATTCTATAAA-AATCA
1 TAAAAATTATAAAAACAAT-A
*
60020091 T-AAAATTATAAAAAAAAGTA
1 TAAAAATTATAAAAACAA-TA
* * * *
60020111 TTAAAATTGACATAAAC-TTA
1 TAAAAATT-ATAAAAACAATA
60020131 TAAAAATTATAAAAACAATA
1 TAAAAATTATAAAAACAATA
60020151 TA
1 TA
60020153 TACAAAACTT
Statistics
Matches: 61, Mismatches: 14, Indels: 14
0.69 0.16 0.16
Matches are distributed among these distances:
19 25 0.41
20 24 0.39
21 7 0.11
22 5 0.08
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.30
Consensus pattern (20 bp):
TAAAAATTATAAAAACAATA
Found at i:60020675 original size:9 final size:10
Alignment explanation
Indices: 60020660--60020684 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
60020650 TATTTTAAAT
60020660 AATTTTTTAA
1 AATTTTTTAA
60020670 AATTTTTTAA
1 AATTTTTTAA
60020680 AATTT
1 AATTT
60020685 ATTTTTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
AATTTTTTAA
Found at i:60020723 original size:17 final size:17
Alignment explanation
Indices: 60020671--60020739 Score: 54
Period size: 19 Copynumber: 3.9 Consensus size: 17
60020661 ATTTTTTAAA
*
60020671 ATTTTT-TAAAATTTAT
1 ATTTTTATAATATTTAT
*
60020687 -TTTTTATTAGAGTTTTTAT
1 ATTTTTA-TA-A-TATTTAT
60020706 ATTTTTATAATATTTAT
1 ATTTTTATAATATTTAT
60020723 ATGTTTTTATAAT-TTTA
1 A--TTTTTATAATATTTA
60020740 ATAAGTTTAT
Statistics
Matches: 43, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
15 5 0.12
17 9 0.21
18 6 0.14
19 17 0.40
20 6 0.14
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.65
Consensus pattern (17 bp):
ATTTTTATAATATTTAT
Found at i:60020738 original size:9 final size:9
Alignment explanation
Indices: 60020699--60020796 Score: 58
Period size: 9 Copynumber: 10.6 Consensus size: 9
60020689 TTTATTAGAG
60020699 TTTTTAT-A
1 TTTTTATAA
60020707 TTTTTATAA
1 TTTTTATAA
* *
60020716 TATTTATATG
1 TTTTTATA-A
60020726 TTTTTATAA
1 TTTTTATAA
*
60020735 TTTTAATAA
1 TTTTTATAA
*
60020744 GTTTATATCAA
1 -TTTTTAT-AA
*
60020755 -TTTTATTA
1 TTTTTATAA
60020763 -TTTTATTATA
1 TTTTTA-TA-A
* *
60020773 TTTTTGTGAT
1 TTTTTAT-AA
60020783 TTTTTATAA
1 TTTTTATAA
60020792 TTTTT
1 TTTTT
60020797 TAAAGATTTT
Statistics
Matches: 68, Mismatches: 14, Indels: 15
0.70 0.14 0.15
Matches are distributed among these distances:
8 13 0.19
9 28 0.41
10 20 0.29
11 7 0.10
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.66
Consensus pattern (9 bp):
TTTTTATAA
Found at i:60020747 original size:19 final size:19
Alignment explanation
Indices: 60020707--60020759 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
60020697 AGTTTTTATA
*
60020707 TTTTTATAATATTT-ATATG
1 TTTTTATAAT-TTTAATAAG
60020726 TTTTTATAATTTTAATAAG
1 TTTTTATAATTTTAATAAG
*
60020745 TTTATATCAATTTTA
1 TTTTTAT-AATTTTA
60020760 TTATTTTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
18 3 0.10
19 20 0.67
20 7 0.23
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (19 bp):
TTTTTATAATTTTAATAAG
Found at i:60020748 original size:27 final size:27
Alignment explanation
Indices: 60020698--60020751 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
60020688 TTTTATTAGA
*
60020698 GTTTTTATATTTTTATAATATTTATAT
1 GTTTTTATATTTTAATAATATTTATAT
*
60020725 GTTTTTATAATTTTAATAA-GTTTATAT
1 GTTTTTAT-ATTTTAATAATATTTATAT
60020752 CAATTTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 15 0.62
28 9 0.38
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (27 bp):
GTTTTTATATTTTAATAATATTTATAT
Found at i:60020777 original size:19 final size:19
Alignment explanation
Indices: 60020682--60020796 Score: 55
Period size: 19 Copynumber: 6.2 Consensus size: 19
60020672 TTTTTTAAAA
*
60020682 TTTATT-TTTTATTAGAGTT
1 TTTATTATTTTATTATA-TT
*
60020701 TTTA-TATTTTTATAATATT
1 TTTATTA-TTTTATTATATT
*
60020720 TATATGT-TTTTA-TA-ATT
1 TTTAT-TATTTTATTATATT
* * * *
60020737 TTAATAAGTTTA-TATCAAT
1 TTTATTATTTTATTAT-ATT
60020756 TTTATTATTTTATTATATT
1 TTTATTATTTTATTATATT
* *
60020775 TTTGTGATTTT-TTATAATT
1 TTTATTATTTTATTAT-ATT
60020794 TTT
1 TTT
60020797 TAAAGATTTT
Statistics
Matches: 72, Mismatches: 15, Indels: 18
0.69 0.14 0.17
Matches are distributed among these distances:
17 12 0.17
18 6 0.08
19 42 0.58
20 11 0.15
21 1 0.01
ACGTcount: A:0.28, C:0.01, G:0.05, T:0.66
Consensus pattern (19 bp):
TTTATTATTTTATTATATT
Found at i:60020786 original size:10 final size:10
Alignment explanation
Indices: 60020685--60020817 Score: 50
Period size: 10 Copynumber: 13.6 Consensus size: 10
60020675 TTTAAAATTT
60020685 ATTTTTTATTA
1 ATTTTTTA-TA
*
60020696 GAGTTTTTAT-
1 -ATTTTTTATA
60020706 A-TTTTTATA
1 ATTTTTTATA
*
60020715 A-TATTTAT-
1 ATTTTTTATA
60020723 ATGTTTTTATA
1 AT-TTTTTATA
*
60020734 A-TTTTAATA
1 ATTTTTTATA
* *
60020743 AGTTTATATCA
1 ATTTTTTAT-A
60020754 ATTTTATTAT-
1 ATTTT-TTATA
*
60020764 -TTTATTAT-
1 ATTTTTTATA
* *
60020772 A-TTTTTGTG
1 ATTTTTTATA
60020781 ATTTTTTATA
1 ATTTTTTATA
*
60020791 ATTTTTTAAA
1 ATTTTTTATA
* *
60020801 GATTTTTAATC
1 -ATTTTTTATA
60020812 ATTTTT
1 ATTTTT
60020818 CATGAAAAAT
Statistics
Matches: 93, Mismatches: 17, Indels: 24
0.69 0.13 0.18
Matches are distributed among these distances:
8 17 0.18
9 20 0.22
10 32 0.34
11 14 0.15
12 10 0.11
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.64
Consensus pattern (10 bp):
ATTTTTTATA
Found at i:60025173 original size:32 final size:30
Alignment explanation
Indices: 60025133--60025191 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
60025123 TATTTGAGTT
60025133 AATTAAATTATTCGGATAAACTCGAATAAAA
1 AATTAAATTATT-GGATAAACTCGAATAAAA
* * *
60025164 AATTAAAATTCTTGGTTTAACTCGAATA
1 AATT-AAATTATTGGATAAACTCGAATA
60025192 TAAATTACAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 17 0.71
32 7 0.29
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.34
Consensus pattern (30 bp):
AATTAAATTATTGGATAAACTCGAATAAAA
Found at i:60028413 original size:20 final size:19
Alignment explanation
Indices: 60028354--60028416 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 19
60028344 TTTTAGAAAA
60028354 TTTTT-AAATTTTTAACTTT
1 TTTTTAAAATTTTTAA-TTT
* * *
60028373 CTTTATATATTTTTTAGATTT
1 -TTTTTAAAATTTTTA-ATTT
60028394 TTTTTAAAATTTTATAATTT
1 TTTTTAAAATTTT-TAATTT
60028414 TTT
1 TTT
60028417 AAAAATATAT
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
20 21 0.62
21 12 0.35
22 1 0.03
ACGTcount: A:0.27, C:0.03, G:0.02, T:0.68
Consensus pattern (19 bp):
TTTTTAAAATTTTTAATTT
Found at i:60028427 original size:18 final size:18
Alignment explanation
Indices: 60028393--60028427 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
60028383 TTTTTAGATT
* *
60028393 TTTTTTAAAATTTTATAA
1 TTTTTTAAAAATATATAA
60028411 TTTTTTAAAAATATATA
1 TTTTTTAAAAATATATA
60028428 TATAATTTAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TTTTTTAAAAATATATAA
Found at i:60028491 original size:20 final size:21
Alignment explanation
Indices: 60028459--60028503 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
60028449 ATATTTTTAA
60028459 TTTTAAAATTTATTTTG-ATT
1 TTTTAAAATTTATTTTGAATT
60028479 TTTTGAAAA-TTATTTTGAATT
1 TTTT-AAAATTTATTTTGAATT
60028500 TTTT
1 TTTT
60028504 TTTTGTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 12 0.52
21 11 0.48
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (21 bp):
TTTTAAAATTTATTTTGAATT
Found at i:60030189 original size:15 final size:14
Alignment explanation
Indices: 60030168--60030203 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
60030158 ATAATCCTTA
*
60030168 ATAATTATCTTAAT
1 ATAATTATCCTAAT
60030182 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
60030197 ATAATTA
1 ATAATTA
60030204 AAATAGAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:60033834 original size:29 final size:29
Alignment explanation
Indices: 60033790--60033847 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
60033780 GCTAGGGAGA
*
60033790 AAGGGAAAGCATGCAATTCAATCTAATCC
1 AAGGGAAAGCACGCAATTCAATCTAATCC
* *
60033819 AAGGGAAAGCACGCAATTTAATCTGATCC
1 AAGGGAAAGCACGCAATTCAATCTAATCC
60033848 TCAGTTACCC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.21
Consensus pattern (29 bp):
AAGGGAAAGCACGCAATTCAATCTAATCC
Found at i:60035446 original size:15 final size:14
Alignment explanation
Indices: 60035425--60035460 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
60035415 ATAATCCTTA
*
60035425 ATAATTATCTTAAT
1 ATAATTATCCTAAT
60035439 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
60035454 ATAATTA
1 ATAATTA
60035461 AAATAGAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:60036924 original size:19 final size:19
Alignment explanation
Indices: 60036896--60036937 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
60036886 TCATCAATTA
60036896 ATTTAATAAT-ATTACTATT
1 ATTTAATAATCA-TACTATT
* *
60036915 ATTTATTAATCATATTATT
1 ATTTAATAATCATACTATT
60036934 ATTT
1 ATTT
60036938 GTATTATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 19 0.95
20 1 0.05
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTTAATAATCATACTATT
Found at i:60044627 original size:57 final size:58
Alignment explanation
Indices: 60044530--60044646 Score: 148
Period size: 57 Copynumber: 2.0 Consensus size: 58
60044520 ATTAATAGGC
* * *
60044530 GAAAATGGAAAAATGGGAAACATTTGGAGATGATTATGGTTTTCT-CAAATATGAAAAT
1 GAAAATGGAAAAATGAGAAACATTTGGAAATGAATATGGTTTTCTCCAAA-ATGAAAAT
* * * *
60044588 GAAAATGGAGAAAT-AGAATCATTTGGAAATGAATGTGGTTTTCTCCTAAATGAAAAT
1 GAAAATGGAAAAATGAGAAACATTTGGAAATGAATATGGTTTTCTCCAAAATGAAAAT
60044645 GA
1 GA
60044647 CCTGAAAAAT
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
57 35 0.69
58 16 0.31
ACGTcount: A:0.43, C:0.06, G:0.22, T:0.29
Consensus pattern (58 bp):
GAAAATGGAAAAATGAGAAACATTTGGAAATGAATATGGTTTTCTCCAAAATGAAAAT
Found at i:60046588 original size:4 final size:4
Alignment explanation
Indices: 60046579--60046605 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
60046569 AAAACATTTG
60046579 TAAA TAAA TAAA TAAA TAAA TAAA TAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAA
60046606 TAGATGATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
TAAA
Found at i:60053007 original size:41 final size:41
Alignment explanation
Indices: 60052950--60053182 Score: 360
Period size: 41 Copynumber: 5.7 Consensus size: 41
60052940 CATTGAATGT
* * *
60052950 AAGGGGTTGTTAAGTGCAGATTCCTCGAATCACTAATCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
*
60052991 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCGAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
* * *
60053032 AAGGGGTTACTAAGTGCAAATTCCCCGAATCATTGATCGAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATC-AAA
* * *
60053074 AA-GGGTTGCTAAGTGCAAATTCCCCGAATCATTGATCGAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
60053114 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
60053155 AAGGGGTTGCTAAGTGCAGATTCCCCGA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGA
60053183 GGGGTTGCTA
Statistics
Matches: 177, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
40 4 0.02
41 169 0.95
42 4 0.02
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (41 bp):
AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
Found at i:60053192 original size:26 final size:26
Alignment explanation
Indices: 60053156--60053208 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
60053146 CTGATCAAAA
60053156 AGGGGTTGCTAAGTGC-AGATTCCCCG
1 AGGGGTTGCTAAGTGCTA-ATTCCCCG
60053182 AGGGGTTGCTAAGTGCTAATTCCCCG
1 AGGGGTTGCTAAGTGCTAATTCCCCG
60053208 A
1 A
60053209 ATTATTGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.21, C:0.23, G:0.32, T:0.25
Consensus pattern (26 bp):
AGGGGTTGCTAAGTGCTAATTCCCCG
Found at i:60053225 original size:67 final size:68
Alignment explanation
Indices: 60053115--60053245 Score: 187
Period size: 67 Copynumber: 1.9 Consensus size: 68
60053105 TTGATCGAAA
60053115 AGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAAAAGG-GGTTGCTAAGTGCAGATTCC
1 AGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAAAAGGTGGTTGCTAAGTGCAGATTCC
60053179 CCG
66 CCG
* * * *
60053182 AGGGGTTGCTAAGTGCTA-ATTCCCCGAATTATTGATTC-TAAAGGTGGTTGCTAAGTGCTGATT
1 AGGGGTTGCTAAGTGC-AGATTCCCCGAATCACTGA-TCAAAAAGGTGGTTGCTAAGTGCAGATT
60053245 C
64 C
60053246 AACCGTATCC
Statistics
Matches: 57, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
67 36 0.63
68 21 0.37
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.28
Consensus pattern (68 bp):
AGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAAAAGGTGGTTGCTAAGTGCAGATTCC
CCG
Found at i:60053232 original size:42 final size:42
Alignment explanation
Indices: 60053185--60053327 Score: 148
Period size: 42 Copynumber: 3.4 Consensus size: 42
60053175 TTCCCCGAGG
* * * *
60053185 GGTTGCTAAGTGCTAATTCCCCGAATTATTGATTCTAAAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATAATTGATTATAAAGGT
* ** *
60053227 GGTTGCTAAGTGCTGATTCAACCGTATCCTTGATTGTGAAA-G-
1 GGTTGCTAAGTGCTGATTC-CCCGTATAATTGATTAT-AAAGGT
* * *
60053269 GGTTGCTATGTGCTGATTCCCCGTATAACTGAATAT-AAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATAATTGATTATAAAGGT
60053310 GGTTGCTAAGTGCTGATT
1 GGTTGCTAAGTGCTGATT
60053328 TCACCGAGTA
Statistics
Matches: 83, Mismatches: 14, Indels: 9
0.78 0.13 0.08
Matches are distributed among these distances:
39 2 0.02
40 1 0.01
41 28 0.34
42 36 0.43
43 13 0.16
44 3 0.04
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.35
Consensus pattern (42 bp):
GGTTGCTAAGTGCTGATTCCCCGTATAATTGATTATAAAGGT
Found at i:60053314 original size:151 final size:148
Alignment explanation
Indices: 60053033--60053327 Score: 344
Period size: 151 Copynumber: 2.0 Consensus size: 148
60053023 CTGATCGAAA
*
60053033 AGGGGTTACTAAGTGCAAATTCCCCGAATCATTGATCGAAAAAGGGTTGCTAAGTGCAAATTCCC
1 AGGGGTTACTAAGTGCAAATTCCCCGAATCATTGATCGAAAAAGGGTTGCTAAGTGCAAATTCAC
*
60053098 CGAATCATTGATCGAAAAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAAAAGGGGTT
66 CGAATCATTGATCGAAAAGGGGTTGCTAAGTGCAGATTCCCCGAATAACTGAT-AAAAAGGGGTT
60053163 GCTAAGTGCAGATTCCCCG
130 GCTAAGTGCAGATTCCCCG
* * * * * **
60053182 AGGGGTTGCTAAGTGCTAATTCCCCGAATTATTGATTC-TAAAGGTGGTTGCTAAGTGCTGATTC
1 AGGGGTTACTAAGTGCAAATTCCCCGAATCATTGA-TCGAAAAAG-GGTTGCTAAGTGCAAATTC
* * * * * * * *
60053246 AACCGTATCCTTGATTGTGAAA-GGGTTGCTATGTGCTGATTCCCCGTATAACTGA-ATATAAGG
64 -ACCGAATCATTGATCG-AAAAGGGGTTGCTAAGTGCAGATTCCCCGAATAACTGATA-AAAAGG
*
60053309 TGGTTGCTAAGTGCTGATT
126 -GGTTGCTAAGTGCAGATT
60053328 TCACCGAGTA
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
149 37 0.30
150 24 0.20
151 58 0.48
152 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (148 bp):
AGGGGTTACTAAGTGCAAATTCCCCGAATCATTGATCGAAAAAGGGTTGCTAAGTGCAAATTCAC
CGAATCATTGATCGAAAAGGGGTTGCTAAGTGCAGATTCCCCGAATAACTGATAAAAAGGGGTTG
CTAAGTGCAGATTCCCCG
Found at i:60058019 original size:22 final size:23
Alignment explanation
Indices: 60057976--60058024 Score: 55
Period size: 24 Copynumber: 2.1 Consensus size: 23
60057966 TAAAACAAGC
*
60057976 ATATATATAATAAATATTAAAATT
1 ATATATATAATAAATA-TAAAAAT
* *
60058000 ATATTTATATTAAATA-AAAAAT
1 ATATATATAATAAATATAAAAAT
60058022 ATA
1 ATA
60058025 AACTAAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 8 0.36
24 14 0.64
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (23 bp):
ATATATATAATAAATATAAAAAT
Found at i:60058472 original size:21 final size:23
Alignment explanation
Indices: 60058446--60058496 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
60058436 ATGAATCAAA
60058446 AAGAAAAAA-AAA-ATTTCTCCT
1 AAGAAAAAACAAACATTTCTCCT
*
60058467 AAGAAAAAACAAACTTTTCTCCT
1 AAGAAAAAACAAACATTTCTCCT
60058490 AA-AAAAA
1 AAGAAAAA
60058497 GTACGGATAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 9 0.33
22 8 0.30
23 10 0.37
ACGTcount: A:0.59, C:0.16, G:0.04, T:0.22
Consensus pattern (23 bp):
AAGAAAAAACAAACATTTCTCCT
Found at i:60058832 original size:18 final size:18
Alignment explanation
Indices: 60058809--60058851 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
60058799 GAATAGGTTT
60058809 TTAATTAAATAAATTT-AA
1 TTAATTAAA-AAATTTAAA
* *
60058827 TTAATTGAAAATTTTAAA
1 TTAATTAAAAAATTTAAA
60058845 TTAATTA
1 TTAATTA
60058852 CACCTTGAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
TTAATTAAAAAATTTAAA
Found at i:60070115 original size:19 final size:20
Alignment explanation
Indices: 60070093--60070144 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
60070083 AAATAGGAGG
60070093 ATATTTTTTAAAATTTTA-A
1 ATATTTTTTAAAATTTTATA
** *
60070112 ATATTTTTTGGATTTTTATA
1 ATATTTTTTAAAATTTTATA
60070132 AT-TTTTTTAAAAT
1 ATATTTTTTAAAAT
60070145 AATTTTTTTA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
19 23 0.88
20 3 0.12
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.62
Consensus pattern (20 bp):
ATATTTTTTAAAATTTTATA
Found at i:60070975 original size:16 final size:16
Alignment explanation
Indices: 60070956--60070989 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
60070946 TTTCCTCTCT
60070956 TTTTTTTAA-ATATTTA
1 TTTTTTTAACAT-TTTA
60070972 TTTTTTTAACATTTTA
1 TTTTTTTAACATTTTA
60070988 TT
1 TT
60070990 AGATCTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.88
17 2 0.12
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTTTTAACATTTTA
Found at i:60075732 original size:25 final size:24
Alignment explanation
Indices: 60075696--60075767 Score: 62
Period size: 21 Copynumber: 3.0 Consensus size: 24
60075686 AGGTAATAAA
60075696 TTTTATAA-AATTTTAAAAATTATAT
1 TTTTA-AATAATTTT-AAAATTATAT
*
60075721 TTTTAAATAA-TTT--AATCATAT
1 TTTTAAATAATTTTAAAATTATAT
**
60075742 TTTTATTTAATTTTAAGAATTATAT
1 TTTTAAATAATTTTAA-AATTATAT
60075767 T
1 T
60075768 AATTGATTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
21 15 0.39
22 3 0.08
24 5 0.13
25 15 0.39
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (24 bp):
TTTTAAATAATTTTAAAATTATAT
Found at i:60077268 original size:24 final size:23
Alignment explanation
Indices: 60077241--60077286 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
60077231 CTTAGTTATG
60077241 ACAATACAAAAATACATTATTTTT
1 ACAA-ACAAAAATACATTATTTTT
* *
60077265 ACAAAGAAAAATATATTATTTT
1 ACAAACAAAAATACATTATTTT
60077287 GAGAATATGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.52, C:0.09, G:0.02, T:0.37
Consensus pattern (23 bp):
ACAAACAAAAATACATTATTTTT
Found at i:60083403 original size:27 final size:25
Alignment explanation
Indices: 60083356--60083406 Score: 66
Period size: 27 Copynumber: 2.0 Consensus size: 25
60083346 CGGGTAACTC
60083356 TGAAAAGCTATTATCAGGAAGCTCA
1 TGAAAAGCTATTATCAGGAAGCTCA
* *
60083381 TGAAAGAGCTTTTAATCGGGAAGCTC
1 TGAAA-AGCTATT-ATCAGGAAGCTC
60083407 CGGATAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 5 0.23
26 6 0.27
27 11 0.50
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (25 bp):
TGAAAAGCTATTATCAGGAAGCTCA
Found at i:60083561 original size:24 final size:23
Alignment explanation
Indices: 60083523--60083584 Score: 61
Period size: 24 Copynumber: 2.7 Consensus size: 23
60083513 GGAAGAACCA
*
60083523 TATATCGGAAAGCTCAAGAGAGCT
1 TATATCGGGAAGCTCAAGAGAG-T
* * *
60083547 TATATCGGGATGCTCATGCGAGT
1 TATATCGGGAAGCTCAAGAGAGT
* *
60083570 TATAGCGGGACGCTC
1 TATATCGGGAAGCTC
60083585 TTGCGAGCTA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 14 0.44
24 18 0.56
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (23 bp):
TATATCGGGAAGCTCAAGAGAGT
Found at i:60083578 original size:23 final size:23
Alignment explanation
Indices: 60083546--60083591 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
60083536 TCAAGAGAGC
* *
60083546 TTATATCGGGATGCTCATGCGAG
1 TTATAGCGGGACGCTCATGCGAG
*
60083569 TTATAGCGGGACGCTCTTGCGAG
1 TTATAGCGGGACGCTCATGCGAG
60083592 CTATGGTGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.33, T:0.28
Consensus pattern (23 bp):
TTATAGCGGGACGCTCATGCGAG
Found at i:60090083 original size:41 final size:41
Alignment explanation
Indices: 60090026--60090258 Score: 369
Period size: 41 Copynumber: 5.7 Consensus size: 41
60090016 CATTGAATGT
* * *
60090026 AAGGGGTTGTTAAGTGCAGATTCCTCGAATCACTAATCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
*
60090067 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCGAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
* *
60090108 AAGGGGTTGCTAAGTGCAAATTCCCCGAATCATTGATCGAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATC-AAA
* * *
60090150 AA-GGGTTGCTAAGTGCAAATTCCCCGAATCATTGATCGAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
60090190 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
60090231 AAGGGGTTGCTAAGTGCAGATTCCCCGA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGA
60090259 GGGGTTGCTA
Statistics
Matches: 179, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
40 4 0.02
41 171 0.96
42 4 0.02
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (41 bp):
AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
Found at i:60090268 original size:26 final size:26
Alignment explanation
Indices: 60090232--60090284 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
60090222 CTGATCAAAA
60090232 AGGGGTTGCTAAGTGC-AGATTCCCCG
1 AGGGGTTGCTAAGTGCTA-ATTCCCCG
60090258 AGGGGTTGCTAAGTGCTAATTCCCCG
1 AGGGGTTGCTAAGTGCTAATTCCCCG
60090284 A
1 A
60090285 ATTATTGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.21, C:0.23, G:0.32, T:0.25
Consensus pattern (26 bp):
AGGGGTTGCTAAGTGCTAATTCCCCG
Found at i:60090301 original size:67 final size:68
Alignment explanation
Indices: 60090191--60090321 Score: 187
Period size: 67 Copynumber: 1.9 Consensus size: 68
60090181 TTGATCGAAA
60090191 AGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAAAAGG-GGTTGCTAAGTGCAGATTCC
1 AGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAAAAGGTGGTTGCTAAGTGCAGATTCC
60090255 CCG
66 CCG
* * * *
60090258 AGGGGTTGCTAAGTGCTA-ATTCCCCGAATTATTGATTC-TAAAGGTGGTTGCTAAGTGCTGATT
1 AGGGGTTGCTAAGTGC-AGATTCCCCGAATCACTGA-TCAAAAAGGTGGTTGCTAAGTGCAGATT
60090321 C
64 C
60090322 AACCGTATCC
Statistics
Matches: 57, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
67 36 0.63
68 21 0.37
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.28
Consensus pattern (68 bp):
AGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAAAAGGTGGTTGCTAAGTGCAGATTCC
CCG
Found at i:60090308 original size:42 final size:42
Alignment explanation
Indices: 60090261--60090403 Score: 148
Period size: 42 Copynumber: 3.4 Consensus size: 42
60090251 TTCCCCGAGG
* * * *
60090261 GGTTGCTAAGTGCTAATTCCCCGAATTATTGATTCTAAAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATAATTGATTATAAAGGT
* ** *
60090303 GGTTGCTAAGTGCTGATTCAACCGTATCCTTGATTGTGAAA-G-
1 GGTTGCTAAGTGCTGATTC-CCCGTATAATTGATTAT-AAAGGT
* * *
60090345 GGTTGCTATGTGCTGATTCCCCGTATAACTGAATAT-AAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATAATTGATTATAAAGGT
60090386 GGTTGCTAAGTGCTGATT
1 GGTTGCTAAGTGCTGATT
60090404 TCACCGAGTA
Statistics
Matches: 83, Mismatches: 14, Indels: 9
0.78 0.13 0.08
Matches are distributed among these distances:
39 2 0.02
40 1 0.01
41 28 0.34
42 36 0.43
43 13 0.16
44 3 0.04
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.35
Consensus pattern (42 bp):
GGTTGCTAAGTGCTGATTCCCCGTATAATTGATTATAAAGGT
Found at i:60090391 original size:151 final size:148
Alignment explanation
Indices: 60090109--60090403 Score: 353
Period size: 151 Copynumber: 2.0 Consensus size: 148
60090099 CTGATCGAAA
*
60090109 AGGGGTTGCTAAGTGCAAATTCCCCGAATCATTGATCGAAAAAGGGTTGCTAAGTGCAAATTCCC
1 AGGGGTTGCTAAGTGCAAATTCCCCGAATCATTGATCGAAAAAGGGTTGCTAAGTGCAAATTCAC
*
60090174 CGAATCATTGATCGAAAAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAAAAGGGGTT
66 CGAATCATTGATCGAAAAGGGGTTGCTAAGTGCAGATTCCCCGAATAACTGAT-AAAAAGGGGTT
60090239 GCTAAGTGCAGATTCCCCG
130 GCTAAGTGCAGATTCCCCG
* * * * **
60090258 AGGGGTTGCTAAGTGCTAATTCCCCGAATTATTGATTC-TAAAGGTGGTTGCTAAGTGCTGATTC
1 AGGGGTTGCTAAGTGCAAATTCCCCGAATCATTGA-TCGAAAAAG-GGTTGCTAAGTGCAAATTC
* * * * * * * *
60090322 AACCGTATCCTTGATTGTGAAA-GGGTTGCTATGTGCTGATTCCCCGTATAACTGA-ATATAAGG
64 -ACCGAATCATTGATCG-AAAAGGGGTTGCTAAGTGCAGATTCCCCGAATAACTGATA-AAAAGG
*
60090385 TGGTTGCTAAGTGCTGATT
126 -GGTTGCTAAGTGCAGATT
60090404 TCACCGAGTA
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
149 38 0.31
150 24 0.20
151 58 0.47
152 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (148 bp):
AGGGGTTGCTAAGTGCAAATTCCCCGAATCATTGATCGAAAAAGGGTTGCTAAGTGCAAATTCAC
CGAATCATTGATCGAAAAGGGGTTGCTAAGTGCAGATTCCCCGAATAACTGATAAAAAGGGGTTG
CTAAGTGCAGATTCCCCG
Found at i:60094032 original size:19 final size:20
Alignment explanation
Indices: 60094010--60094061 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
60094000 AAATAGGAGG
60094010 ATATTTTTTAAAATTTTA-A
1 ATATTTTTTAAAATTTTATA
** *
60094029 ATATTTTTTGGATTTTTATA
1 ATATTTTTTAAAATTTTATA
60094049 AT-TTTTTTAAAAT
1 ATATTTTTTAAAAT
60094062 AATTTTTTTA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
19 23 0.88
20 3 0.12
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.62
Consensus pattern (20 bp):
ATATTTTTTAAAATTTTATA
Found at i:60094895 original size:16 final size:16
Alignment explanation
Indices: 60094876--60094909 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
60094866 TTCCTCTCTT
60094876 TTTTTTTAA-ATATTTA
1 TTTTTTTAACAT-TTTA
60094892 TTTTTTTAACATTTTA
1 TTTTTTTAACATTTTA
60094908 TT
1 TT
60094910 AGATCTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.88
17 2 0.12
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTTTTAACATTTTA
Found at i:60099667 original size:25 final size:24
Alignment explanation
Indices: 60099631--60099702 Score: 62
Period size: 21 Copynumber: 3.0 Consensus size: 24
60099621 AGGTAATAAA
60099631 TTTTATAA-AATTTTAAAAATTATAT
1 TTTTA-AATAATTTT-AAAATTATAT
*
60099656 TTTTAAATAA-TTT--AATCATAT
1 TTTTAAATAATTTTAAAATTATAT
**
60099677 TTTTATTTAATTTTAAGAATTATAT
1 TTTTAAATAATTTTAA-AATTATAT
60099702 T
1 T
60099703 AATTGATTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
21 15 0.39
22 3 0.08
24 5 0.13
25 15 0.39
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (24 bp):
TTTTAAATAATTTTAAAATTATAT
Found at i:60101204 original size:24 final size:23
Alignment explanation
Indices: 60101177--60101222 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
60101167 CTTAGTTATG
60101177 ACAATACAAAAATACATTATTTTT
1 ACAA-ACAAAAATACATTATTTTT
* *
60101201 ACAAAGAAAAATATATTATTTT
1 ACAAACAAAAATACATTATTTT
60101223 GAGAATATGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.52, C:0.09, G:0.02, T:0.37
Consensus pattern (23 bp):
ACAAACAAAAATACATTATTTTT
Found at i:60107335 original size:27 final size:25
Alignment explanation
Indices: 60107288--60107338 Score: 66
Period size: 27 Copynumber: 2.0 Consensus size: 25
60107278 CGGGTAACTC
60107288 TGAAAAGCTATTATCAGGAAGCTCA
1 TGAAAAGCTATTATCAGGAAGCTCA
* *
60107313 TGAAAGAGCTTTTAATCGGGAAGCTC
1 TGAAA-AGCTATT-ATCAGGAAGCTC
60107339 CGGATAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 5 0.23
26 6 0.27
27 11 0.50
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (25 bp):
TGAAAAGCTATTATCAGGAAGCTCA
Found at i:60107493 original size:24 final size:23
Alignment explanation
Indices: 60107455--60107516 Score: 61
Period size: 24 Copynumber: 2.7 Consensus size: 23
60107445 GGAAGAACCA
*
60107455 TATATCGGAAAGCTCAAGAGAGCT
1 TATATCGGGAAGCTCAAGAGAG-T
* * *
60107479 TATATCGGGATGCTCATGTGAGT
1 TATATCGGGAAGCTCAAGAGAGT
* *
60107502 TATAGCGGGACGCTC
1 TATATCGGGAAGCTC
60107517 TTGCGAGCTA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 14 0.44
24 18 0.56
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (23 bp):
TATATCGGGAAGCTCAAGAGAGT
Found at i:60109404 original size:19 final size:19
Alignment explanation
Indices: 60109380--60109420 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
60109370 CCCCTTGCCC
60109380 AATCCATAAATAGGAGAAT
1 AATCCATAAATAGGAGAAT
60109399 AATCCATAAATAGGAGAAT
1 AATCCATAAATAGGAGAAT
60109418 AAT
1 AAT
60109421 ACGCTAAGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.54, C:0.10, G:0.15, T:0.22
Consensus pattern (19 bp):
AATCCATAAATAGGAGAAT
Found at i:60118723 original size:18 final size:18
Alignment explanation
Indices: 60118702--60118736 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
60118692 GATAATAATC
*
60118702 AATAATAATAAATAATAT
1 AATAAAAATAAATAATAT
*
60118720 AATAAAAATAATTAATA
1 AATAAAAATAAATAATA
60118737 ACAAGGGACC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
AATAAAAATAAATAATAT
Found at i:60120967 original size:20 final size:20
Alignment explanation
Indices: 60120942--60120987 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
60120932 ATTTAAAGAA
60120942 AATTTTTAATCAACTCAATC
1 AATTTTTAATCAACTCAATC
* *
60120962 AATTTTTTATCAATTCAATC
1 AATTTTTAATCAACTCAATC
60120982 AATTTT
1 AATTTT
60120988 GTATCGATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.37, C:0.15, G:0.00, T:0.48
Consensus pattern (20 bp):
AATTTTTAATCAACTCAATC
Found at i:60120992 original size:20 final size:20
Alignment explanation
Indices: 60120950--60120992 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
60120940 AAAATTTTTA
*
60120950 ATCAACTCAATCAATTTTTT
1 ATCAACTCAATCAATTTTGT
*
60120970 ATCAATTCAATCAATTTTGT
1 ATCAACTCAATCAATTTTGT
60120990 ATC
1 ATC
60120993 GATTAAATCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.35, C:0.19, G:0.02, T:0.44
Consensus pattern (20 bp):
ATCAACTCAATCAATTTTGT
Found at i:60121001 original size:20 final size:20
Alignment explanation
Indices: 60120958--60121001 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
60120948 TAATCAACTC
* *
60120958 AATCAATTTTTTATCAATTC
1 AATCAATTTTGTATCAATTA
*
60120978 AATCAATTTTGTATCGATTA
1 AATCAATTTTGTATCAATTA
60120998 AATC
1 AATC
60121002 TTTTTTAGGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.14, G:0.05, T:0.45
Consensus pattern (20 bp):
AATCAATTTTGTATCAATTA
Found at i:60126808 original size:17 final size:16
Alignment explanation
Indices: 60126786--60126829 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 16
60126776 TTCAAAATGC
60126786 AATTAATTAAAAATTTT
1 AATTAATTAAAAA-TTT
60126803 AATTAATT--AAATTT
1 AATTAATTAAAAATTT
*
60126817 ATTTAATTAAAAA
1 AATTAATTAAAAA
60126830 CTTATTCTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
14 10 0.42
15 3 0.12
16 3 0.12
17 8 0.33
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
AATTAATTAAAAATTT
Found at i:60127775 original size:23 final size:23
Alignment explanation
Indices: 60127725--60127769 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
60127715 GGCCAATCAC
*
60127725 TGTAATATCCCGAAAATTACTAA
1 TGTAATACCCCGAAAATTACTAA
60127748 TGTAATACCCCGAAAATTACTA
1 TGTAATACCCCGAAAATTACTA
60127770 CAGTAAGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (23 bp):
TGTAATACCCCGAAAATTACTAA
Found at i:60136776 original size:30 final size:31
Alignment explanation
Indices: 60136740--60136804 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
60136730 AACAACCTAA
* *
60136740 TGACTTAAAT-AATACTTTCGAATAGTTCAG
1 TGACTTAAATGAAAACTTTCAAATAGTTCAG
*
60136770 TGACTTAAATGAAAACTTTTAAATAGTTCAG
1 TGACTTAAATGAAAACTTTCAAATAGTTCAG
60136801 TGAC
1 TGAC
60136805 CATTTTGTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
30 10 0.32
31 21 0.68
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.35
Consensus pattern (31 bp):
TGACTTAAATGAAAACTTTCAAATAGTTCAG
Found at i:60138949 original size:30 final size:32
Alignment explanation
Indices: 60138883--60138941 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
60138873 TCTACTATAT
60138883 TTTTTGTTATAAATATTTTATTTAAAATACAC
1 TTTTTGTTATAAATATTTTATTTAAAATACAC
*
60138915 TTTTTGTTATAGATA-TTT-TTTAAAATA
1 TTTTTGTTATAAATATTTTATTTAAAATA
60138942 TCGTTTTTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 9 0.35
31 3 0.12
32 14 0.54
ACGTcount: A:0.36, C:0.03, G:0.05, T:0.56
Consensus pattern (32 bp):
TTTTTGTTATAAATATTTTATTTAAAATACAC
Found at i:60145766 original size:45 final size:44
Alignment explanation
Indices: 60145614--60146413 Score: 374
Period size: 44 Copynumber: 17.6 Consensus size: 44
60145604 AATCCTATAC
*
60145614 CCCTGAAGTTGCAGTGG-G-ATGGATTGAAGATCATAGCAAGCCTTATCT
1 CCCTGAAGTTGCAGTGGAGCA--GATTGAAG---ATAGCAA-TCTTATCT
* *
60145662 CCCTGAAGTTGCAGTGGAGCAGGTTGAA-ATTA-CTAGTCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGA-TAGC-AATCTTATCT
* *
60145706 CCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATTT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGC-AATCTTATCT
* * *
60145751 CCCTGAAGTTTCAGTGGAACGGATTGAAGCTATAAATTGCAGATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAG--AT--A--GCA-ATCTTATCT
** * *
60145802 CTTTGAAGTTGCAGTAGAGCAGATT----ATAGCAAACCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGC-AATCTTATCT
* * * * *
60145843 CCCTAAAGTTACAGTAGAGCAGGTTGAAGTTA-CAAGTCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAA-TCTTATCT
* * * * *
60145887 CCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGTGAATTTTATAT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG-CAATCTTATCT
* * * * *
60145932 CCCTAAAGTTGCAGTGGAACGGATTGAAGCTATAAATTGTAGGTCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAG--AT--A--GCA-ATCTTATCT
* * ** * *
60145983 CTCTGAAGTTGCAAT--AG-AG-TTGATCATAGAAAACCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG-CAATCTTATCT
* * * * * *
60146024 CCTTAAAATTACAGTGGAGCAGACTGAAGATAACCAATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-AGCAATCTTATCT
* *
60146069 CTCTGAAGTTGCAGTGGAGCAGATTGAAGACAGACTACAAATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG----C-AATCTTATCT
* * * ** *
60146118 CCTTGAAGTTGTAGTGGAGCAGATTAAAGCCA-CAAACCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGC-AATCTTATCT
* * * * * * * *
60146162 CACTGAAGTTGAAGTGGAACAGGTTAAAAATAAACCAATCTGATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGAT--AGCAATCTTATCT
* *
60146208 CCCTAAAGTTGCAGTGGAGCAGATTGAAGATGGGATACAAATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGAT---A-GC-AATCTTATCT
* * * * *
60146257 CCCTAAAGTTACAGTAGAGCAGATTAAAGCCATA--AACCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAG--ATAGCAATCTTATCT
* * * * * *
60146301 CCCTAAATTTACAGTGGAGCAGGTTGAAGATACCAATCTCATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAATCTTATCT
* * * * * * * **
60146345 CCTTAAAGTTGTAGTAGATCAAATTGAAGCTA-CTAATCCCATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGC-AATCTTATCT
* *
60146389 CCCCGAAGTTGCAGTGGAGCGGATT
1 CCCTGAAGTTGCAGTGGAGCAGATT
60146414 AAAACGATGA
Statistics
Matches: 571, Mismatches: 131, Indels: 104
0.71 0.16 0.13
Matches are distributed among these distances:
41 47 0.08
42 5 0.01
43 7 0.01
44 198 0.35
45 112 0.20
46 36 0.06
47 10 0.02
48 27 0.05
49 76 0.13
50 3 0.01
51 50 0.09
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.28
Consensus pattern (44 bp):
CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAATCTTATCT
Found at i:60145824 original size:96 final size:94
Alignment explanation
Indices: 60145696--60146001 Score: 317
Period size: 96 Copynumber: 3.3 Consensus size: 94
60145686 TGAAATTACT
* * *
60145696 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAGTT
1 AGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGATAGCGAATCTTATATCCCTAAAGTT
*
60145761 TCAGTGGAACGGATTGAAGCTATAAATTG
66 ACAGTGGAACGGATTGAAGCTATAAATTG
** * * * *
60145790 CAGATCTTATCTCTTTGAAGTTGCAGTAGAGCAGA-T---TATAGCAAACCTTATCTCCCTAAAG
1 -AG-TCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGATAGCGAATCTTATATCCCTAAAG
* * *
60145851 TTACAGTAGAGCAGG-TTGAAG-T-TACA---
64 TTACAGTGGAAC-GGATTGAAGCTATAAATTG
* * * *
60145877 AGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGTGAATTTTATATCCCTAAAGTT
1 AGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGATAGCGAATCTTATATCCCTAAAGTT
*
60145942 GCAGTGGAACGGATTGAAGCTATAAATTG
66 ACAGTGGAACGGATTGAAGCTATAAATTG
* *
60145971 TAGGTCTTATCTCTCTGAAGTTGCAATAGAG
1 -A-GTCTTATCTCCCTGAAGTTGCAGTAGAG
60146002 TTGATCATAG
Statistics
Matches: 168, Mismatches: 29, Indels: 27
0.75 0.13 0.12
Matches are distributed among these distances:
85 27 0.16
86 3 0.02
88 2 0.01
89 34 0.20
90 4 0.02
91 4 0.02
92 35 0.21
93 2 0.01
95 4 0.02
96 53 0.32
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (94 bp):
AGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGATAGCGAATCTTATATCCCTAAAGTT
ACAGTGGAACGGATTGAAGCTATAAATTG
Found at i:60145950 original size:181 final size:181
Alignment explanation
Indices: 60145641--60146098 Score: 648
Period size: 181 Copynumber: 2.5 Consensus size: 181
60145631 GATGGATTGA
* * * * *
60145641 AGATCATAGCAAGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATTACTAGTCTTATCT
1 AGATCATAGCAAACCTTATCTCCCTAAAGTTACAGTGGAGCAGGTTGAAGTTACAAGTCTTATCT
* * *
60145706 CCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAGTTTCAGTGGAAC
66 CCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATATCCCTAAAGTTGCAGTGGAAC
* *
60145771 GGATTGAAGCTATAAATTGCAGATCTTATCTCTTTGAAGTTGCAGTAGAGC
131 GGATTGAAGCTATAAATTGCAGATCTTATCTCTCTGAAGTTGCAATAGAGC
* *
60145822 AGATTATAGCAAACCTTATCTCCCTAAAGTTACAGTAGAGCAGGTTGAAGTTACAAGTCTTATCT
1 AGATCATAGCAAACCTTATCTCCCTAAAGTTACAGTGGAGCAGGTTGAAGTTACAAGTCTTATCT
* * *
60145887 CCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGTGAATTTTATATCCCTAAAGTTGCAGTGGAAC
66 CCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATATCCCTAAAGTTGCAGTGGAAC
* * *
60145952 GGATTGAAGCTATAAATTGTAGGTCTTATCTCTCTGAAGTTGCAATAGAGT
131 GGATTGAAGCTATAAATTGCAGATCTTATCTCTCTGAAGTTGCAATAGAGC
* * * * ** *
60146003 TGATCATAGAAAACCTTATCTCCTTAAAATTACAGTGGAGCAGACTGAAGATAACCAA-TCTTAT
1 AGATCATAGCAAACCTTATCTCCCTAAAGTTACAGTGGAGCAGGTTGAAG-TTA-CAAGTCTTAT
* *
60146067 CTCTCTGAAGTTGCAGTGGAGCAGATTGAAGA
64 CTCCCTGAAGTTGCAGTGGAGCAGACTGAAGA
60146099 CAGACTACAA
Statistics
Matches: 245, Mismatches: 30, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
181 205 0.84
182 37 0.15
183 3 0.01
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (181 bp):
AGATCATAGCAAACCTTATCTCCCTAAAGTTACAGTGGAGCAGGTTGAAGTTACAAGTCTTATCT
CCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATATCCCTAAAGTTGCAGTGGAAC
GGATTGAAGCTATAAATTGCAGATCTTATCTCTCTGAAGTTGCAATAGAGC
Found at i:60146219 original size:139 final size:138
Alignment explanation
Indices: 60146013--60146373 Score: 390
Period size: 139 Copynumber: 2.6 Consensus size: 138
60146003 TGATCATAGA
* ** * * * * *
60146013 AAACCTTATCTC-CTTAAAATT-ACAGTGGAGCAGACTGAAGATAACCAATCTTATCTCTCTGAA
1 AAACCTTATCTCAC-T-AAATTGACAGTGGAACAGGTTAAAAATAACCAATCTCATCTCCCTAAA
* * ** *
60146076 GTTGCAGTGGAGCAGATTGAAGA-CAGACTACAAATCTTATCTCCTTGAAGTTGTAGTGGAGCAG
64 GTTGCAGTGGAGCAGATTGAAGATCAGA-TACAAATCTTATCTCCCTAAAGTTACAGTAGAGCAG
60146140 ATTAAAGCCAC
128 ATTAAAGCCAC
* *
60146151 AAACCTTATCTCACTGAAGTTGA-AGTGGAACAGGTTAAAAATAAACCAATCTGATCTCCCTAAA
1 AAACCTTATCTCACT-AAATTGACAGTGGAACAGGTTAAAAAT-AACCAATCTCATCTCCCTAAA
**
60146215 GTTGCAGTGGAGCAGATTGAAGATGGGATACAAATCTTATCTCCCTAAAGTTACAGTAGAGCAGA
64 GTTGCAGTGGAGCAGATTGAAGATCAGATACAAATCTTATCTCCCTAAAGTTACAGTAGAGCAGA
*
60146280 TTAAAGCCAT
129 TTAAAGCCAC
* * * * * *
60146290 AAACCTTATCTCCCTAAATTTACAGTGGAGCAGGTTGAAGAT-ACCAATCTCATCTCCTTAAAGT
1 AAACCTTATCTCACTAAATTGACAGTGGAACAGGTTAAAAATAACCAATCTCATCTCCCTAAAGT
* * * *
60146354 TGTAGTAGATCAAATTGAAG
66 TGCAGTGGAGCAGATTGAAG
60146374 CTACTAATCC
Statistics
Matches: 188, Mismatches: 30, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
137 36 0.19
138 36 0.19
139 114 0.61
140 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (138 bp):
AAACCTTATCTCACTAAATTGACAGTGGAACAGGTTAAAAATAACCAATCTCATCTCCCTAAAGT
TGCAGTGGAGCAGATTGAAGATCAGATACAAATCTTATCTCCCTAAAGTTACAGTAGAGCAGATT
AAAGCCAC
Found at i:60146737 original size:16 final size:17
Alignment explanation
Indices: 60146711--60146742 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
60146701 AGACCAAATA
60146711 CAAATAATAAATAAAAC
1 CAAATAATAAATAAAAC
60146728 CAAA-AATAAATAAAA
1 CAAATAATAAATAAAA
60146743 AAAGTCCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.75, C:0.09, G:0.00, T:0.16
Consensus pattern (17 bp):
CAAATAATAAATAAAAC
Found at i:60146759 original size:15 final size:15
Alignment explanation
Indices: 60146735--60146765 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
60146725 AACCAAAAAT
60146735 AAATAAAAAAAGTCC
1 AAATAAAAAAAGTCC
*
60146750 AAATATAAAAAGTCC
1 AAATAAAAAAAGTCC
60146765 A
1 A
60146766 TTTACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.65, C:0.13, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATAAAAAAAGTCC
Found at i:60148170 original size:12 final size:12
Alignment explanation
Indices: 60148125--60148203 Score: 70
Period size: 12 Copynumber: 6.5 Consensus size: 12
60148115 TCAAATTTTA
*
60148125 TATTATTCACTAT
1 TATTA-TCATTAT
*
60148138 TATTATTATTAT
1 TATTATCATTAT
* * *
60148150 TAATGTCATTGT
1 TATTATCATTAT
60148162 TATTATCATTAT
1 TATTATCATTAT
* *
60148174 TATTGTCATCAT
1 TATTATCATTAT
60148186 T-TTCATCATTAT
1 TATT-ATCATTAT
60148198 TATTAT
1 TATTAT
60148204 TGTTTATGCA
Statistics
Matches: 51, Mismatches: 13, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
11 2 0.04
12 42 0.82
13 7 0.14
ACGTcount: A:0.29, C:0.10, G:0.04, T:0.57
Consensus pattern (12 bp):
TATTATCATTAT
Found at i:60154396 original size:118 final size:120
Alignment explanation
Indices: 60154256--60154497 Score: 425
Period size: 121 Copynumber: 2.0 Consensus size: 120
60154246 TGTTTGAATG
*
60154256 AATATGAACTTGAATTTTCATATAGTGTGTAC-AA-ATAGATTTTTTATGTCATTTTTCTTGTAT
1 AATATGAACTTGAATTTTCATATAGTGTGTACAAATATAGATTTTTTATGTCAATTTTCTTGTAT
*
60154319 GAAGATAAACTTGTCTTTTTAAAGAAAATTGGGTATGAATTTCCTGCCTTATAAT
66 GAAGATAAACTTGTCTTTTTAAAGAAAATTGGGTATGAATTTCCTACCTTATAAT
*
60154374 AATATGAACTTGAATTTTCATATAGTGTGTACAAATTATAGATTTTTTATGTTAATTTTCTTGTA
1 AATATGAACTTGAATTTTCATATAGTGTGTACAAA-TATAGATTTTTTATGTCAATTTTCTTGTA
*
60154439 TGAAGATAAACTTGTCTTTTTAAAGAAAATTGGGTATGAATTTCCTACCTTATATT
65 TGAAGATAAACTTGTCTTTTTAAAGAAAATTGGGTATGAATTTCCTACCTTATAAT
60154495 AAT
1 AAT
60154498 GTCACATTAC
Statistics
Matches: 117, Mismatches: 4, Indels: 3
0.94 0.03 0.02
Matches are distributed among these distances:
118 32 0.27
119 2 0.02
121 83 0.71
ACGTcount: A:0.33, C:0.09, G:0.14, T:0.45
Consensus pattern (120 bp):
AATATGAACTTGAATTTTCATATAGTGTGTACAAATATAGATTTTTTATGTCAATTTTCTTGTAT
GAAGATAAACTTGTCTTTTTAAAGAAAATTGGGTATGAATTTCCTACCTTATAAT
Found at i:60156990 original size:23 final size:22
Alignment explanation
Indices: 60156964--60157009 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 22
60156954 ATACATAAAT
60156964 ATTTTAAAA-ATATATAATAACAA
1 ATTTTAAAATATAT-TAA-AACAA
60156987 ATTTTAAAATATATTAAAACAA
1 ATTTTAAAATATATTAAAACAA
60157009 A
1 A
60157010 AAAAGTGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 6 0.27
23 12 0.55
24 4 0.18
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (22 bp):
ATTTTAAAATATATTAAAACAA
Found at i:60156995 original size:22 final size:23
Alignment explanation
Indices: 60156964--60157009 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 23
60156954 ATACATAAAT
60156964 ATTTTAAAAATATA-TAATAACAA
1 ATTTTAAAAATATATTAA-AACAA
60156987 ATTTT-AAAATATATTAAAACAA
1 ATTTTAAAAATATATTAAAACAA
60157009 A
1 A
60157010 AAAAGTGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (23 bp):
ATTTTAAAAATATATTAAAACAA
Found at i:60157438 original size:14 final size:15
Alignment explanation
Indices: 60157419--60157453 Score: 56
Period size: 13 Copynumber: 2.5 Consensus size: 15
60157409 GTGTTTTATC
60157419 TTTTTTTA-TTTTTA
1 TTTTTTTATTTTTTA
60157433 -TTTTTTATTTTTTA
1 TTTTTTTATTTTTTA
60157447 TTTTTTT
1 TTTTTTT
60157454 CAAATCTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 7 0.37
14 6 0.32
15 6 0.32
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (15 bp):
TTTTTTTATTTTTTA
Found at i:60157452 original size:7 final size:7
Alignment explanation
Indices: 60157420--60157452 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
60157410 TGTTTTATCT
60157420 TTTTTTA
1 TTTTTTA
60157427 -TTTTTA
1 TTTTTTA
60157433 TTTTTTA
1 TTTTTTA
60157440 TTTTTTA
1 TTTTTTA
60157447 TTTTTT
1 TTTTTT
60157453 TCAAATCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:60158218 original size:18 final size:18
Alignment explanation
Indices: 60158187--60158235 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
60158177 GGCCAATGTA
*
60158187 GGCGTGT-TGGCCACACG
1 GGCGTGTGTGCCCACACG
60158204 GGCGTGTGTGCCCACACG
1 GGCGTGTGTGCCCACACG
* *
60158222 GGCATGTGGGCCCA
1 GGCGTGTGTGCCCA
60158236 TAATTCTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
17 7 0.25
18 21 0.75
ACGTcount: A:0.12, C:0.31, G:0.41, T:0.16
Consensus pattern (18 bp):
GGCGTGTGTGCCCACACG
Found at i:60164780 original size:13 final size:12
Alignment explanation
Indices: 60164760--60164794 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
60164750 ATGCTATAAC
60164760 AAAAAGAAAAGA
1 AAAAAGAAAAGA
60164772 AAAAGAGAAAAGA
1 AAAA-AGAAAAGA
*
60164785 AAAATGAAAA
1 AAAAAGAAAA
60164795 CCTAAAGTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 9 0.43
13 12 0.57
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (12 bp):
AAAAAGAAAAGA
Found at i:60165940 original size:99 final size:99
Alignment explanation
Indices: 60165769--60165952 Score: 316
Period size: 99 Copynumber: 1.9 Consensus size: 99
60165759 GACAACACAT
* *
60165769 AGTAATTGAATGAGTGTAATAATTCTTAGGGTAGTAATTACACTCTCTTGTAATTACAAAGAATT
1 AGTAATTGAATGAGTGTAATAATTATTAAGGTAGTAATTACACTCTCTTGTAATTACAAAGAATT
*
60165834 AGAATTCCCTAGATGTGTTTTTTGGACAGAACAG
66 AGAATTCCCTAGACGTGTTTTTTGGACAGAACAG
*
60165868 AGTAATTGAATGAGTGTAATAATTATTAAGGTAGTAATTACACTCTCTTGTAATTATAAAGAATT
1 AGTAATTGAATGAGTGTAATAATTATTAAGGTAGTAATTACACTCTCTTGTAATTACAAAGAATT
60165933 -GTAATTCCCTAGACGTGTTT
66 AG-AATTCCCTAGACGTGTTT
60165953 AGCTAGCAGA
Statistics
Matches: 80, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
98 1 0.01
99 79 0.99
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (99 bp):
AGTAATTGAATGAGTGTAATAATTATTAAGGTAGTAATTACACTCTCTTGTAATTACAAAGAATT
AGAATTCCCTAGACGTGTTTTTTGGACAGAACAG
Done.