Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 23 of 207
Found at i:6802922 original size:44 final size:44
Alignment explanation
Indices: 6802859--6802949 Score: 173
Period size: 44 Copynumber: 2.1 Consensus size: 44
6802849 AACTCTGTTT
6802859 TTAATTTCTCACTTAAACTCTGATTAGTGTAGGTTATTTTAATA
1 TTAATTTCTCACTTAAACTCTGATTAGTGTAGGTTATTTTAATA
*
6802903 TTAATTTCTCACTTAAACTCTGATTAGTGTGGGTTATTTTAATA
1 TTAATTTCTCACTTAAACTCTGATTAGTGTAGGTTATTTTAATA
6802947 TTA
1 TTA
6802950 TTTGACCTAC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.29, C:0.11, G:0.12, T:0.48
Consensus pattern (44 bp):
TTAATTTCTCACTTAAACTCTGATTAGTGTAGGTTATTTTAATA
Found at i:6804420 original size:12 final size:12
Alignment explanation
Indices: 6804398--6804461 Score: 60
Period size: 12 Copynumber: 5.4 Consensus size: 12
6804388 TTTCTTTAGT
6804398 TTATT-TTATTA
1 TTATTGTTATTA
**
6804409 ACATTGTTATTA
1 TTATTGTTATTA
*
6804421 TTATTTTTATTA
1 TTATTGTTATTA
*
6804433 TTATTGTTATTG
1 TTATTGTTATTA
*
6804445 TTA-TATTATATA
1 TTATTGTTAT-TA
6804457 TTATT
1 TTATT
6804462 ATATCTACAT
Statistics
Matches: 41, Mismatches: 9, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
11 8 0.20
12 32 0.78
13 1 0.02
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.66
Consensus pattern (12 bp):
TTATTGTTATTA
Found at i:6804423 original size:3 final size:3
Alignment explanation
Indices: 6804415--6804463 Score: 55
Period size: 3 Copynumber: 16.3 Consensus size: 3
6804405 ATTAACATTG
* * *
6804415 TTA TTA TTA TTT TTA TTA TTA TTG TTA TTG TTA -TA TTA TATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
6804460 TTA T
1 TTA T
6804464 ATCTACATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
2 2 0.05
3 33 0.87
4 3 0.08
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:6804432 original size:24 final size:24
Alignment explanation
Indices: 6804401--6804448 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
6804391 CTTTAGTTTA
6804401 TTTTATTAACATTGTTATTATTAT
1 TTTTATTAACATTGTTATTATTAT
** *
6804425 TTTTATTATTATTGTTATTGTTAT
1 TTTTATTAACATTGTTATTATTAT
6804449 ATTATATATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.25, C:0.02, G:0.06, T:0.67
Consensus pattern (24 bp):
TTTTATTAACATTGTTATTATTAT
Found at i:6804626 original size:34 final size:33
Alignment explanation
Indices: 6804562--6804630 Score: 84
Period size: 34 Copynumber: 2.1 Consensus size: 33
6804552 TTTTATTATC
**
6804562 TTATTTTCATAATTTTCACATACATATATATTT
1 TTATTTTCATAATTTAAACATACATATATATTT
* * *
6804595 TTATATTTCATGATTTAAACATGCATGTATATTT
1 TTAT-TTTCATAATTTAAACATACATATATATTT
6804629 TT
1 TT
6804631 TGTATGTTTA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
33 4 0.13
34 26 0.87
ACGTcount: A:0.32, C:0.10, G:0.04, T:0.54
Consensus pattern (33 bp):
TTATTTTCATAATTTAAACATACATATATATTT
Found at i:6818588 original size:2 final size:2
Alignment explanation
Indices: 6818576--6818613 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
6818566 AAATGACGGG
* *
6818576 GA GA GA AA GA GA GA GA GA GA GA GA GA GA GA GA GG GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
6818614 TGAATTATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:6820307 original size:11 final size:10
Alignment explanation
Indices: 6820291--6820356 Score: 63
Period size: 9 Copynumber: 7.1 Consensus size: 10
6820281 TATTTTTTAA
6820291 TTAATATATTT
1 TTAATA-ATTT
6820302 TTAATAA-TT
1 TTAATAATTT
6820311 TTAATAATTT
1 TTAATAATTT
6820321 TT--T-ATTT
1 TTAATAATTT
6820328 TTAA-AATTT
1 TTAATAATTT
* *
6820337 TTTATATTTT
1 TTAATAATTT
6820347 TTAA-AATTT
1 TTAATAATTT
6820356 T
1 T
6820357 AATTTTAATT
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
7 6 0.13
8 1 0.02
9 21 0.46
10 12 0.26
11 6 0.13
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (10 bp):
TTAATAATTT
Found at i:6820321 original size:18 final size:17
Alignment explanation
Indices: 6820300--6820359 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
6820290 ATTAATATAT
*
6820300 TTTTAATAATTTTAATAA
1 TTTTAATATTTTTAA-AA
*
6820318 TTTT-TTATTTTTAAAA
1 TTTTAATATTTTTAAAA
*
6820334 TTTTTTATATTTTTTAAAA
1 -TTTTAATA-TTTTTAAAA
6820353 TTTTAAT
1 TTTTAAT
6820360 TTTAATTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
16 2 0.06
17 12 0.34
18 12 0.34
19 9 0.26
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTAATATTTTTAAAA
Found at i:6820331 original size:17 final size:17
Alignment explanation
Indices: 6820298--6820356 Score: 66
Period size: 19 Copynumber: 3.3 Consensus size: 17
6820288 TAATTAATAT
*
6820298 ATTTTTAATAATTTTAATA
1 ATTTTTTAT-ATTTTAA-A
6820317 ATTTTTTAT-TTTTAAA
1 ATTTTTTATATTTTAAA
6820333 ATTTTTTATATTTTTTAAA
1 ATTTTTTATA--TTTTAAA
6820352 ATTTT
1 ATTTT
6820357 AATTTTAATT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
16 10 0.28
17 6 0.17
19 20 0.56
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
ATTTTTTATATTTTAAA
Found at i:6820338 original size:26 final size:25
Alignment explanation
Indices: 6820297--6820349 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 25
6820287 TTAATTAATA
6820297 TATTTTTAATAATTTTAATAATTTTT
1 TATTTTTAATAATTTTAAT-ATTTTT
*
6820323 TATTTTTAA-AATTTTTTATATTTTT
1 TATTTTTAATAA-TTTTAATATTTTT
6820348 TA
1 TA
6820350 AAATTTTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (25 bp):
TATTTTTAATAATTTTAATATTTTT
Found at i:6827066 original size:50 final size:50
Alignment explanation
Indices: 6826942--6827190 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
6826932 GATAATAACA
* * ** * *
6826942 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
6826993 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
6827043 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
6827093 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
6827148 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
6827191 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:6827120 original size:100 final size:104
Alignment explanation
Indices: 6826941--6827190 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
6826931 TGATAATAAC
**
6826941 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
6827006 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
6827043 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
6827106 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
6827148 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
6827191 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:6827306 original size:13 final size:13
Alignment explanation
Indices: 6827285--6827316 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
6827275 GCTTGGATCA
*
6827285 TCATCAAATAAAT
1 TCATAAAATAAAT
6827298 TCATAAAATAAAT
1 TCATAAAATAAAT
6827311 TCATAA
1 TCATAA
6827317 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:6827563 original size:30 final size:30
Alignment explanation
Indices: 6827528--6827585 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
6827518 CCTCGACTCT
*
6827528 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
6827558 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
6827586 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:6832746 original size:50 final size:50
Alignment explanation
Indices: 6832622--6832815 Score: 259
Period size: 50 Copynumber: 3.9 Consensus size: 50
6832612 GATAATAACA
* ** * *
6832622 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCAT-CTCGG
* * *
6832673 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
6832723 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
6832773 TGCC-ATGCCATGTCCCAGACATGGTCTTACA-GGGACCTCTCAT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT
6832816 GATCTTAGAT
Statistics
Matches: 127, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
48 11 0.09
49 27 0.21
50 56 0.44
51 33 0.26
ACGTcount: A:0.20, C:0.30, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:6832992 original size:13 final size:13
Alignment explanation
Indices: 6832971--6833002 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
6832961 GCTTGGATCA
*
6832971 TCATCAAATAAAT
1 TCATAAAATAAAT
6832984 TCATAAAATAAAT
1 TCATAAAATAAAT
6832997 TCATAA
1 TCATAA
6833003 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:6833249 original size:30 final size:30
Alignment explanation
Indices: 6833214--6833271 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
6833204 CCTCGACTCT
*
6833214 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
6833244 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
6833272 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:6840165 original size:24 final size:22
Alignment explanation
Indices: 6840128--6840192 Score: 60
Period size: 24 Copynumber: 2.8 Consensus size: 22
6840118 TAAGCATGTA
6840128 GTACATAT-TAATATATAAAAACGT
1 GTACATATAT-ATATATAAAAA--T
*
6840152 GTACATATATATATTATGAAAAT
1 GTACATATATATA-TATAAAAAT
*
6840175 GATATATATATATATATA
1 G-TACATATATATATATA
6840193 GATATATAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
23 5 0.14
24 22 0.63
25 8 0.23
ACGTcount: A:0.49, C:0.05, G:0.08, T:0.38
Consensus pattern (22 bp):
GTACATATATATATATAAAAAT
Found at i:6840280 original size:3 final size:3
Alignment explanation
Indices: 6840241--6840356 Score: 89
Period size: 3 Copynumber: 38.7 Consensus size: 3
6840231 ATGTATTAGT
* * *
6840241 ATA ATA GTA ATAA ATA AAA AGA A-A ATA A-A ACTA ATA ATA ATTA ATA
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA A-TA ATA ATA A-TA ATA
* * **
6840287 ATA GTA ATA ATA GTA ATA ATA ATA ACC ATA ATA ATA ATA AGCTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A--TA ATA
6840334 ATA A-A AT- ATA ATA AT- ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
6840357 GAGCAAATAA
Statistics
Matches: 91, Mismatches: 12, Indels: 20
0.74 0.10 0.16
Matches are distributed among these distances:
2 10 0.11
3 70 0.77
4 8 0.09
5 3 0.03
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:6842007 original size:24 final size:24
Alignment explanation
Indices: 6841974--6842020 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
6841964 GCCCATCACT
* *
6841974 CACACGCAGCGCAACCTCATGTAC
1 CACACCCAGCGCAACCGCATGTAC
*
6841998 CACACCCAGCGCCACCGCATGTA
1 CACACCCAGCGCAACCGCATGTA
6842021 TCAAATCACC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.28, C:0.45, G:0.17, T:0.11
Consensus pattern (24 bp):
CACACCCAGCGCAACCGCATGTAC
Found at i:6844550 original size:26 final size:24
Alignment explanation
Indices: 6844511--6844570 Score: 68
Period size: 26 Copynumber: 2.4 Consensus size: 24
6844501 AAATTCGAAG
*
6844511 AAATATATAAAATACATGAATAATTT-
1 AAATATATATAATA-AT-AA-AATTTA
*
6844537 AAATATATATAATAATTAAATTTA
1 AAATATATATAATAATAAAATTTA
6844561 AAATATATAT
1 AAATATATAT
6844571 TAAAAAATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 5 0.16
24 11 0.35
25 2 0.06
26 13 0.42
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (24 bp):
AAATATATATAATAATAAAATTTA
Found at i:6849901 original size:49 final size:50
Alignment explanation
Indices: 6849780--6850068 Score: 378
Period size: 49 Copynumber: 5.8 Consensus size: 50
6849770 GATAATAACA
* * ** * * *
6849780 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGAGATGTTCTCGTGTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * *
6849831 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCA-CTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
6849880 TGCCAACGCCATGTCCCAGACATGGTCTTACAT-GGACCTCTCATCTC-G
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
6849928 TGCCAATGCC-TGTCCCAGACATGGTCTTACATGGGACCTCCTCTCATCTC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA---CCTCTCATCTCGG
6849978 TGCCAATGCCAT-TGCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGT-CCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
6850028 TGCC-ATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
6850069 TTACCCAAAA
Statistics
Matches: 213, Mismatches: 15, Indels: 22
0.85 0.06 0.09
Matches are distributed among these distances:
47 22 0.10
48 34 0.16
49 70 0.33
50 20 0.09
51 67 0.31
ACGTcount: A:0.20, C:0.32, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:6850063 original size:100 final size:99
Alignment explanation
Indices: 6849780--6850067 Score: 379
Period size: 100 Copynumber: 2.9 Consensus size: 99
6849770 GATAATAACA
* ** * * *
6849780 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGAGATGTTCTCGTGTTGGTGCCCATGCCATGT
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGGTG-CCATGCCATGT
* * *
6849845 CCCAGACATGGTCTTATAGGGGACCT-CTCACTCGG
64 CCCAGACATGGTCTTACATGGGACCTCCTCACTCGC
*
6849880 TGCCAACGCCATGTCCCAGACATGGTCTTACAT-GGACCTCTCATCTC-GTGCCAATGCC-TGTC
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCC-ATGCCATGTC
* *
6849942 CCAGACATGGTCTTACATGGGACCTCCTCTCATCTC
65 CCAGACATGGTCTTACATGGGACCTCCTCAC-TCGC
*
6849978 TGCCAATGCCAT-TGCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCATGCCATGTC
1 TGCCAAAGCCATGT-CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCATGCCATGTC
6850042 CCAGACATGGTCTTACATGGGACCTC
65 CCAGACATGGTCTTACATGGGACCTC
6850068 TTTACCCAAA
Statistics
Matches: 168, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
96 29 0.17
97 13 0.08
98 38 0.23
99 21 0.12
100 67 0.40
ACGTcount: A:0.20, C:0.32, G:0.22, T:0.26
Consensus pattern (99 bp):
TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCATGCCATGTCC
CAGACATGGTCTTACATGGGACCTCCTCACTCGC
Found at i:6850184 original size:13 final size:13
Alignment explanation
Indices: 6850163--6850194 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
6850153 GCTTAGATCA
*
6850163 TCATCAAATAAAT
1 TCATAAAATAAAT
6850176 TCATAAAATAAAT
1 TCATAAAATAAAT
6850189 TCATAA
1 TCATAA
6850195 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:6850442 original size:30 final size:30
Alignment explanation
Indices: 6850406--6850463 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
6850396 CCCTCGACCT
*
6850406 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
6850436 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
6850464 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:6858057 original size:25 final size:25
Alignment explanation
Indices: 6858012--6858074 Score: 67
Period size: 25 Copynumber: 2.6 Consensus size: 25
6858002 TAAGCATGTA
*
6858012 TGTACATAT-TA-AATATAAAAACG
1 TGTACATATATATATTATAAAAACG
* *
6858035 TGTACATATATATATTATGAAAATG
1 TGTACATATATATATTATAAAAACG
* *
6858060 TATATATATATATAT
1 TGTACATATATATAT
6858075 AGATATAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
23 9 0.27
24 2 0.06
25 22 0.67
ACGTcount: A:0.48, C:0.05, G:0.08, T:0.40
Consensus pattern (25 bp):
TGTACATATATATATTATAAAAACG
Found at i:6858159 original size:3 final size:3
Alignment explanation
Indices: 6858121--6858229 Score: 86
Period size: 3 Copynumber: 36.7 Consensus size: 3
6858111 ATGTATTAGT
* *
6858121 ATA ATA GTA ATAA ATA A-A AGA A-A ATA A-A ACTA ATA ATA ATTA ATA
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA A-TA ATA ATA A-TA ATA
* **
6858166 ATA GTA ATA ATA ATA ATA ACC ATA ATA ATA ATA AGCTA ATA ATA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A--TA ATA ATA ATA
6858212 AT- ATA ATA AT- ATA ATA AT
1 ATA ATA ATA ATA ATA ATA AT
6858230 GAGCAAATAA
Statistics
Matches: 87, Mismatches: 8, Indels: 22
0.74 0.07 0.19
Matches are distributed among these distances:
2 12 0.14
3 64 0.74
4 8 0.09
5 3 0.03
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:6859888 original size:24 final size:24
Alignment explanation
Indices: 6859855--6859901 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
6859845 GCCCATCACT
* *
6859855 CACACGCAGCGCAACCTCATGTAC
1 CACACCCAGCGCAACCGCATGTAC
*
6859879 CACACCCAGCGCCACCGCATGTA
1 CACACCCAGCGCAACCGCATGTA
6859902 TCAAATCACC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.28, C:0.45, G:0.17, T:0.11
Consensus pattern (24 bp):
CACACCCAGCGCAACCGCATGTAC
Found at i:6862446 original size:21 final size:21
Alignment explanation
Indices: 6862413--6862457 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
6862403 ATACATGAAT
6862413 AATTTAAATATATATAATAATA
1 AATTTAAATATATATAATAA-A
*
6862435 AATTTAAA-ATATATATTAAA
1 AATTTAAATATATATAATAAA
6862455 AAT
1 AAT
6862458 AAAAAATGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 4 0.18
21 10 0.45
22 8 0.36
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
AATTTAAATATATATAATAAA
Found at i:6862448 original size:23 final size:23
Alignment explanation
Indices: 6862413--6862460 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
6862403 ATACATGAAT
*
6862413 AATTTAAATATATA-TAATAATA
1 AATTTAAATATATATTAAAAATA
6862435 AATTTAAAATATATATTAAAAATA
1 AATTT-AAATATATATTAAAAATA
6862459 AA
1 AA
6862461 AAATGCCTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 5 0.22
23 9 0.39
24 9 0.39
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (23 bp):
AATTTAAATATATATTAAAAATA
Found at i:6883114 original size:92 final size:90
Alignment explanation
Indices: 6882881--6883142 Score: 269
Period size: 93 Copynumber: 2.8 Consensus size: 90
6882871 ACAAGTCACT
* *
6882881 GCATCTTCACTAAATTAAGATTCAAGAGGAAGTGCTTCAGTTTGGTTTGGTTTTGGACTCCACTA
1 GCATCTTCACTAAA-T-AGA-TCAAGAGGAAGTGCTTCAGTTTGGTTTTGTTTTGGACT-CACTG
*
6882946 ATCCTTTGAAAACATCAAAAGATACATCA
62 ATCCTTTGAAAGCATCAAAAGATACATCA
* * **
6882975 -CATCTTCACTAGATAAAGGTTCATA-AGGAAGCACTTCAGTTTGGTTTTGTTTTGGACTCAGCT
1 GCATCTTCACTA-A-ATA-GATCA-AGAGGAAGTGCTTCAGTTTGGTTTTGTTTTGGACTCA-CT
* * *
6883038 GATCCCTTGAAAGCAT-AAAAGGTGCATCGCA
61 GATCCTTTGAAAGCATCAAAAGATACAT--CA
* ** *
6883069 GCATCTTCACTAAATAGATCACGAGGAAGTGCTTCAACTTGGTTTTGTTTTGGACTCAAATGATC
1 GCATCTTCACTAAATAGATCAAGAGGAAGTGCTTCAGTTTGGTTTTGTTTTGGACTC-ACTGATC
6883134 CTTTGAAAG
65 CTTTGAAAG
6883143 TACTAAAAAA
Statistics
Matches: 139, Mismatches: 19, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
92 58 0.42
93 63 0.45
94 6 0.04
95 12 0.09
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.32
Consensus pattern (90 bp):
GCATCTTCACTAAATAGATCAAGAGGAAGTGCTTCAGTTTGGTTTTGTTTTGGACTCACTGATCC
TTTGAAAGCATCAAAAGATACATCA
Found at i:6883323 original size:15 final size:15
Alignment explanation
Indices: 6883305--6883336 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
6883295 CTCGCTAGAC
6883305 GGTTCATGTTTGAAA
1 GGTTCATGTTTGAAA
*
6883320 GGTTCATGTTTGGAA
1 GGTTCATGTTTGAAA
6883335 GG
1 GG
6883337 ACAACTAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.06, G:0.34, T:0.38
Consensus pattern (15 bp):
GGTTCATGTTTGAAA
Found at i:6885363 original size:6 final size:6
Alignment explanation
Indices: 6885352--6885393 Score: 84
Period size: 6 Copynumber: 7.0 Consensus size: 6
6885342 AGCTGAACCC
6885352 TATATT TATATT TATATT TATATT TATATT TATATT TATATT
1 TATATT TATATT TATATT TATATT TATATT TATATT TATATT
6885394 ATCTTAAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
TATATT
Found at i:6885404 original size:18 final size:17
Alignment explanation
Indices: 6885352--6885411 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 17
6885342 AGCTGAACCC
*
6885352 TATATTTATATTTATATT
1 TATA-TTATATTAATATT
*
6885370 TATATTTATATTTATATT
1 TATA-TTATATTAATATT
*
6885388 TATATTATCTTAAATATT
1 TATATTATATT-AATATT
6885406 TA-ATTA
1 TATATTA
6885412 AATAATCAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
17 10 0.26
18 29 0.74
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.62
Consensus pattern (17 bp):
TATATTATATTAATATT
Found at i:6893733 original size:13 final size:13
Alignment explanation
Indices: 6893715--6893740 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6893705 TCCTTTTACT
6893715 ATATATTTTGTAG
1 ATATATTTTGTAG
6893728 ATATATTTTGTAG
1 ATATATTTTGTAG
6893741 GTATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
ATATATTTTGTAG
Found at i:6894438 original size:20 final size:20
Alignment explanation
Indices: 6894385--6894456 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
6894375 AAATATTAAA
*
6894385 TTAA-ATTAAA-TAATTATC
1 TTAATATTAAATTTATTATC
* *
6894403 TTAATAGT-ATTTTATTAAT-
1 TTAATATTAAATTTATT-ATC
6894422 TTAATATTAAATTTATTATC
1 TTAATATTAAATTTATTATC
6894442 TTAATATTAAATTTA
1 TTAATATTAAATTTA
6894457 ATTTAATGTT
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
18 5 0.11
19 15 0.34
20 24 0.55
ACGTcount: A:0.43, C:0.03, G:0.01, T:0.53
Consensus pattern (20 bp):
TTAATATTAAATTTATTATC
Found at i:6894438 original size:25 final size:25
Alignment explanation
Indices: 6894410--6894461 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
6894400 ATCTTAATAG
*
6894410 TATTTTATTAAT-TTAATATTAAATT
1 TATTATATTAATATTAA-ATTAAATT
* *
6894435 TATTATCTTAATATTAAATTTAATT
1 TATTATATTAATATTAAATTAAATT
6894460 TA
1 TA
6894462 ATGTTTATCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (25 bp):
TATTATATTAATATTAAATTAAATT
Found at i:6894556 original size:59 final size:61
Alignment explanation
Indices: 6894442--6894558 Score: 159
Period size: 59 Copynumber: 1.9 Consensus size: 61
6894432 ATTTATTATC
* * * *
6894442 TTAATATTAAATTTAATTTAATGTTTATCTTATAGATAAATATTCTATTTATTTAATAAGAT
1 TTAATATTAAAGTTAATTTAATATTTATC-TATAGATAAATATTATATTAATTTAATAAGAT
6894504 TTAATATTAAAGTT-ATTATAATATTTATC-A-AGATAAATATTATATTAATTTAATA
1 TTAATATTAAAGTTAATT-TAATATTTATCTATAGATAAATATTATATTAATTTAATA
6894559 TTAAAGTGAT
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
59 23 0.46
60 1 0.02
61 3 0.06
62 23 0.46
ACGTcount: A:0.44, C:0.03, G:0.04, T:0.50
Consensus pattern (61 bp):
TTAATATTAAAGTTAATTTAATATTTATCTATAGATAAATATTATATTAATTTAATAAGAT
Found at i:6899169 original size:9 final size:9
Alignment explanation
Indices: 6899118--6899245 Score: 50
Period size: 9 Copynumber: 13.9 Consensus size: 9
6899108 ACTTTATAAA
6899118 AATTTTCTAT
1 AATTTT-TAT
6899128 -ATTTTATAT
1 AATTTT-TAT
6899137 ACATTTTTCAT
1 A-ATTTTT-AT
*
6899148 GATTTTTA-
1 AATTTTTAT
*
6899156 CATTTTTAT
1 AATTTTTAT
*
6899165 AATTTATAT
1 AATTTTTAT
* *
6899174 AAATTTGA-
1 AATTTTTAT
**
6899182 ACCTTTTA-
1 AATTTTTAT
6899190 AATATTTTAT
1 AAT-TTTTAT
6899200 AATTCTTTAT
1 AATT-TTTAT
*
6899210 -ATATATTAT
1 AAT-TTTTAT
* *
6899219 GAATCTCTAT
1 -AATTTTTAT
6899229 AATTTTTAT
1 AATTTTTAT
*
6899238 GATTTTTA
1 AATTTTTA
6899246 ATATAAAATA
Statistics
Matches: 88, Mismatches: 20, Indels: 21
0.68 0.16 0.16
Matches are distributed among these distances:
8 13 0.15
9 47 0.53
10 19 0.22
11 9 0.10
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (9 bp):
AATTTTTAT
Found at i:6903778 original size:29 final size:29
Alignment explanation
Indices: 6903729--6903809 Score: 80
Period size: 29 Copynumber: 2.8 Consensus size: 29
6903719 GGTCCTATTT
* *
6903729 TTTTTTAATTTCTT-TTA-AATTACCCCCA
1 TTTTTTAGTTT-TTATTACAATTACACCCA
*
6903757 TTTTTTCGTTTTTAATT-CAATTTA-ACCCA
1 TTTTTTAGTTTTT-ATTACAA-TTACACCCA
6903786 TTTTTTAGTTTTTATTACAATTAC
1 TTTTTTAGTTTTTATTACAATTAC
6903810 GCCATACTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
27 2 0.05
28 15 0.35
29 23 0.53
30 3 0.07
ACGTcount: A:0.25, C:0.16, G:0.02, T:0.57
Consensus pattern (29 bp):
TTTTTTAGTTTTTATTACAATTACACCCA
Found at i:6904307 original size:21 final size:21
Alignment explanation
Indices: 6904283--6904327 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
6904273 TTATTATAAG
6904283 CTTGTTGTATATATTTCTTCA
1 CTTGTTGTATATATTTCTTCA
6904304 CTTGTTGTATATATTTCTTCA
1 CTTGTTGTATATATTTCTTCA
6904325 CTT
1 CTT
6904328 ACCTTTTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.18, C:0.16, G:0.09, T:0.58
Consensus pattern (21 bp):
CTTGTTGTATATATTTCTTCA
Found at i:6906525 original size:22 final size:22
Alignment explanation
Indices: 6906500--6906542 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
6906490 ATAAGTTCCT
*
6906500 TTACATTCAATTAATAAATGTA
1 TTACATTCAATCAATAAATGTA
6906522 TTACATTCAATCAATAAATGT
1 TTACATTCAATCAATAAATGT
6906543 GAATTAAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.44, C:0.12, G:0.05, T:0.40
Consensus pattern (22 bp):
TTACATTCAATCAATAAATGTA
Found at i:6909120 original size:109 final size:109
Alignment explanation
Indices: 6908925--6909123 Score: 249
Period size: 109 Copynumber: 1.8 Consensus size: 109
6908915 GAAAAAAAAA
* ** *
6908925 ATCATATGCCTTAGTCATCGCCAAAGTCTTGGCGAAATGATGTAGCACGTCCTTGGTCCACTCCC
1 ATCATATGCCTCAACCATCGCCAAAGTCTTGGCGAAATGATATAGCACGTCCTTGGTCCACTCCC
* * * *
6908990 AAATATTTGTTGATGTTTCCAAAAATCTCGAAGTAAGCTTGAGC
66 AAAGATTTGTCGAAGTCTCCAAAAATCTCGAAGTAAGCTTGAGC
* * *
6909034 ATCATATGCCTCAACCATCGCCAAAGTCTTGGCGGAATGATATAGCACGT-CTTCGGTTCGC-CC
1 ATCATATGCCTCAACCATCGCCAAAGTCTTGGCGAAATGATATAGCACGTCCTT-GGTCCACTCC
**
6909097 TTTAAGATTTGTCGAAGTCTCCAAAAA
65 -CAAAGATTTGTCGAAGTCTCCAAAAA
6909124 ATATTGAGCT
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
108 5 0.07
109 70 0.93
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (109 bp):
ATCATATGCCTCAACCATCGCCAAAGTCTTGGCGAAATGATATAGCACGTCCTTGGTCCACTCCC
AAAGATTTGTCGAAGTCTCCAAAAATCTCGAAGTAAGCTTGAGC
Found at i:6920447 original size:20 final size:18
Alignment explanation
Indices: 6920419--6920459 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
6920409 TAAAAGATAG
6920419 ATAAAATT-AA-T-AACT
1 ATAAAATTAAATTAAACT
6920434 ATAAAATTAAATTAAACT
1 ATAAAATTAAATTAAACT
6920452 ATAAAATT
1 ATAAAATT
6920460 TAAAACACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 8 0.35
16 2 0.09
17 1 0.04
18 12 0.52
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (18 bp):
ATAAAATTAAATTAAACT
Found at i:6921002 original size:31 final size:31
Alignment explanation
Indices: 6920967--6921034 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
6920957 ATTTGATTTG
* *
6920967 ATTATACATATTAAAATTTGATTTTAAATT-A
1 ATTATACAAATAAAAATTTGATTTT-AATTCA
*
6920998 ATTATATAAATAAAAATTTGATTTTAATTCA
1 ATTATACAAATAAAAATTTGATTTTAATTCA
6921029 ATTATA
1 ATTATA
6921035 AATCTTTAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 4 0.12
31 29 0.88
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (31 bp):
ATTATACAAATAAAAATTTGATTTTAATTCA
Found at i:6921081 original size:93 final size:93
Alignment explanation
Indices: 6920983--6921163 Score: 256
Period size: 93 Copynumber: 1.9 Consensus size: 93
6920973 CATATTAAAA
* * *
6920983 TTTGATTTTAAATTAATTATATAAATAAAAATTTGA-TTTTAATTCAATTATAAATCTTTAGAAA
1 TTTGATTTTAAATTAATTATACAAAT-AAAATTTGAGTTTTAATTCAATTATAAACCATTAGAAA
*
6921047 AACAAATAAGTTATGTTATTTAATAATTT
65 AACAAATAAGTTAAGTTATTTAATAATTT
* * * * *
6921076 TTTGATTTTGAATTAATTATACAAATAAAATTTTAGTTTTGATTCAATTATAAACCATTATAAAT
1 TTTGATTTTAAATTAATTATACAAATAAAATTTGAGTTTTAATTCAATTATAAACCATTAGAAAA
*
6921141 ATAAATAAGTTAAGTTATTTAAT
66 ACAAATAAGTTAAGTTATTTAAT
6921164 GACTTAGGAA
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
92 8 0.10
93 69 0.90
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.46
Consensus pattern (93 bp):
TTTGATTTTAAATTAATTATACAAATAAAATTTGAGTTTTAATTCAATTATAAACCATTAGAAAA
ACAAATAAGTTAAGTTATTTAATAATTT
Found at i:6927758 original size:34 final size:34
Alignment explanation
Indices: 6927698--6927764 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 34
6927688 TCACTATAAT
*
6927698 CAAATAGTGATAATGCAACTATAATAACAACAACA
1 CAAATAGTGATAAT-CAACAATAATAACAACAACA
*
6927733 CAAATAGATGATAAT-AACAATAATAATAACAA
1 CAAATAG-TGATAATCAACAATAATAACAACAA
6927765 TTATGACATG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 15 0.52
35 7 0.24
36 7 0.24
ACGTcount: A:0.58, C:0.13, G:0.07, T:0.21
Consensus pattern (34 bp):
CAAATAGTGATAATCAACAATAATAACAACAACA
Found at i:6927873 original size:21 final size:21
Alignment explanation
Indices: 6927834--6927873 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
6927824 TTTAAAGGGC
*
6927834 AAAAATGTAAATAATAAAATT
1 AAAAATGTAAATAACAAAATT
6927855 AAAAATGCTAAA-AACAAAA
1 AAAAATG-TAAATAACAAAA
6927874 ATACACTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.70, C:0.05, G:0.05, T:0.20
Consensus pattern (21 bp):
AAAAATGTAAATAACAAAATT
Found at i:6929384 original size:16 final size:15
Alignment explanation
Indices: 6929361--6929392 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
6929351 AATTAATGGA
6929361 TTTTTTATTTTTGTT
1 TTTTTTATTTTTGTT
6929376 TTTTATTATTTTTGTT
1 TTTT-TTATTTTTGTT
6929392 T
1 T
6929393 AGGCCGGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.09, C:0.00, G:0.06, T:0.84
Consensus pattern (15 bp):
TTTTTTATTTTTGTT
Found at i:6932810 original size:29 final size:29
Alignment explanation
Indices: 6932761--6932845 Score: 84
Period size: 31 Copynumber: 2.8 Consensus size: 29
6932751 TTTTATGTGT
6932761 AATTTAATACATG-AACTTTGATTTGGTGC
1 AATTT-ATACATGAAACTTTGATTTGGTGC
*
6932790 AATTTGATACATGAAAC-TTGAATTGTGGTTC
1 AATTT-ATACATGAAACTTTG-ATT-TGGTGC
* *
6932821 ATATATATACATTAAACTTTGATTT
1 A-ATTTATACATGAAACTTTGATTT
6932846 TAGTTAAACT
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
29 15 0.32
30 7 0.15
31 19 0.40
32 6 0.13
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.42
Consensus pattern (29 bp):
AATTTATACATGAAACTTTGATTTGGTGC
Found at i:6933408 original size:24 final size:22
Alignment explanation
Indices: 6933366--6933409 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
6933356 ATTTATATTT
*
6933366 ATAAAAAAAAATAATAATTGAA
1 ATAAAAAAAAATAAAAATTGAA
6933388 ATAAGAAAAAAATGAAAAATTG
1 ATAA-AAAAAAAT-AAAAATTG
6933410 GAGAAATCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 8 0.42
24 7 0.37
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.20
Consensus pattern (22 bp):
ATAAAAAAAAATAAAAATTGAA
Found at i:6935414 original size:31 final size:31
Alignment explanation
Indices: 6935376--6935436 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
6935366 GGCCCATTTT
6935376 TATTTTAAAAAT-TTTAAAAAATTAAAAAAAG
1 TATTTTAAAAATATTT-AAAAATTAAAAAAAG
*
6935407 TATTTTAAAAATATTTTAAAATTAAAAAAA
1 TATTTTAAAAATATTTAAAAATTAAAAAAA
6935437 TTAAAAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
31 25 0.89
32 3 0.11
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (31 bp):
TATTTTAAAAATATTTAAAAATTAAAAAAAG
Found at i:6935416 original size:11 final size:11
Alignment explanation
Indices: 6935376--6935508 Score: 67
Period size: 11 Copynumber: 12.9 Consensus size: 11
6935366 GGCCCATTTT
6935376 TATTTT-AAAA
1 TATTTTAAAAA
6935386 -ATTTTAAAAA
1 TATTTTAAAAA
**
6935396 -ATTAAAAAAA
1 TATTTTAAAAA
6935406 GTATTTTAAAAA
1 -TATTTTAAAAA
6935418 TATTTT--AAA
1 TATTTTAAAAA
6935427 -A--TTAAAAA
1 TATTTTAAAAA
* **
6935435 AATTAAAAAAAA
1 TATT-TTAAAAA
6935447 GTATTTTAAAAA
1 -TATTTTAAAAA
6935459 TATTTT--AAA
1 TATTTTAAAAA
6935468 -A-TTTAAAAA
1 TATTTTAAAAA
* *
6935477 AAATTTAAAAA
1 TATTTTAAAAA
*
6935488 GTA-TGTAAAAA
1 -TATTTTAAAAA
6935499 TATTTTAAAA
1 TATTTTAAAA
6935509 TTAAAAAAAT
Statistics
Matches: 95, Mismatches: 12, Indels: 31
0.69 0.09 0.22
Matches are distributed among these distances:
6 2 0.02
7 3 0.03
8 5 0.05
9 15 0.16
10 15 0.16
11 33 0.35
12 19 0.20
13 3 0.03
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:6935441 original size:40 final size:41
Alignment explanation
Indices: 6935376--6935518 Score: 204
Period size: 41 Copynumber: 3.5 Consensus size: 41
6935366 GGCCCATTTT
*
6935376 TATTTTAAAAATTTTAAAAAATTAAAAAAAGTATTTTAAAAA
1 TATTTT-AAAATTTAAAAAAATTAAAAAAAGTATTTTAAAAA
6935418 TATTTTAAAA-TTAAAAAAATTAAAAAAAAGTATTTTAAAAA
1 TATTTTAAAATTTAAAAAAATT-AAAAAAAGTATTTTAAAAA
* *
6935459 TATTTTAAAATTTAAAAAAAATT-TAAAAAGTA-TGTAAAAA
1 TATTTTAAAATTT-AAAAAAATTAAAAAAAGTATTTTAAAAA
6935499 TATTTTAAAA-TTAAAAAAAT
1 TATTTTAAAATTTAAAAAAAT
6935519 AAATATATTT
Statistics
Matches: 95, Mismatches: 3, Indels: 10
0.88 0.03 0.09
Matches are distributed among these distances:
38 8 0.08
39 2 0.02
40 27 0.28
41 41 0.43
42 8 0.08
43 9 0.09
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (41 bp):
TATTTTAAAATTTAAAAAAATTAAAAAAAGTATTTTAAAAA
Found at i:6937321 original size:19 final size:20
Alignment explanation
Indices: 6937283--6937327 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
6937273 TAATTACTAT
*
6937283 AAAAATTTATTAACACAATA
1 AAAAATTTATAAACACAATA
*
6937303 AAAAATTTCTAAACA-AATA
1 AAAAATTTATAAACACAATA
6937322 ACAAAA
1 A-AAAA
6937328 AATCGTATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.64, C:0.11, G:0.00, T:0.24
Consensus pattern (20 bp):
AAAAATTTATAAACACAATA
Found at i:6938407 original size:19 final size:21
Alignment explanation
Indices: 6938363--6938407 Score: 58
Period size: 19 Copynumber: 2.2 Consensus size: 21
6938353 AAATTTATAA
*
6938363 AATATACATAAATTAGTTTTAT
1 AATATACATAAATTA-TTTTAC
6938385 AATATA-ATAAATT-TTTTAC
1 AATATACATAAATTATTTTAC
6938404 AATA
1 AATA
6938408 ACCATCCCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 9 0.41
21 7 0.32
22 6 0.27
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.44
Consensus pattern (21 bp):
AATATACATAAATTATTTTAC
Found at i:6939920 original size:13 final size:13
Alignment explanation
Indices: 6939902--6939926 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6939892 TATTTGTATG
6939902 TATATATATATTA
1 TATATATATATTA
6939915 TATATATATATT
1 TATATATATATT
6939927 GAGTTTCTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TATATATATATTA
Found at i:6940254 original size:18 final size:18
Alignment explanation
Indices: 6940217--6940259 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
6940207 GAATAGGTTT
6940217 TTAATTAAATAAATTTAA
1 TTAATTAAATAAATTTAA
* *
6940235 TTGATTAAA-AATTTTAAA
1 TTAATTAAATAAATTT-AA
6940253 TTAATTA
1 TTAATTA
6940260 CATATTGAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
TTAATTAAATAAATTTAA
Found at i:6943382 original size:17 final size:17
Alignment explanation
Indices: 6943349--6943383 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
6943339 TCCTCTATGT
* *
6943349 TAGAATAAATATTAAAA
1 TAGAATAAAAATCAAAA
6943366 TAGAATAAAAATCAAAA
1 TAGAATAAAAATCAAAA
6943383 T
1 T
6943384 CAAATAGTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.66, C:0.03, G:0.06, T:0.26
Consensus pattern (17 bp):
TAGAATAAAAATCAAAA
Found at i:6947966 original size:20 final size:20
Alignment explanation
Indices: 6947941--6947983 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
6947931 CAAATCCAAC
6947941 CTCGAACCTCAAATCCTGAA
1 CTCGAACCTCAAATCCTGAA
** *
6947961 CTCGAACCTTGAATCTTGAA
1 CTCGAACCTCAAATCCTGAA
6947981 CTC
1 CTC
6947984 AGGGTTCGGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.33, G:0.12, T:0.26
Consensus pattern (20 bp):
CTCGAACCTCAAATCCTGAA
Found at i:6949113 original size:15 final size:15
Alignment explanation
Indices: 6949074--6949106 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
6949064 TCTATTATTT
6949074 AATAATTTTTTTAAA
1 AATAATTTTTTTAAA
6949089 AATAATTTTTTTAAA
1 AATAATTTTTTTAAA
6949104 AAT
1 AAT
6949107 TGTTTTTAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
AATAATTTTTTTAAA
Found at i:6949963 original size:20 final size:19
Alignment explanation
Indices: 6949900--6949963 Score: 65
Period size: 19 Copynumber: 3.1 Consensus size: 19
6949890 AAAATTTTAT
6949900 AAAAATTTGATTTTCTATAAAA
1 AAAAATTT-ATTTT-TAT-AAA
*
6949922 ATAAAATCTAGTTTTTATAAA
1 A-AAAATTTA-TTTTTATAAA
*
6949943 AAAAATTTATTTTTATGAA
1 AAAAATTTATTTTTATAAA
6949962 AA
1 AA
6949964 TTATAAAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
19 11 0.30
20 7 0.19
21 4 0.11
22 5 0.14
23 10 0.27
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42
Consensus pattern (19 bp):
AAAAATTTATTTTTATAAA
Found at i:6952411 original size:16 final size:16
Alignment explanation
Indices: 6952390--6952427 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
6952380 TTTGGTTCGC
6952390 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
6952406 TGTATTGGATTAGATG
1 TGTATTGGATTAGAGG
6952422 TGTATT
1 TGTATT
6952428 AGCTAATCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.45
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:6952678 original size:16 final size:16
Alignment explanation
Indices: 6952641--6952695 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
6952631 TTAATCATAT
*
6952641 TTAAACATA-ATTATAA
1 TTAAA-ATATATTTTAA
6952657 TT-AAATATATTTTAA
1 TTAAAATATATTTTAA
6952672 TTAAAATATATAATTTAA
1 TTAAAATATAT--TTTAA
6952690 -TAAAAT
1 TTAAAAT
6952696 TCTTATAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 3 0.09
15 10 0.29
16 10 0.29
17 6 0.18
18 5 0.15
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
TTAAAATATATTTTAA
Found at i:6952688 original size:18 final size:18
Alignment explanation
Indices: 6952647--6952695 Score: 61
Period size: 16 Copynumber: 2.9 Consensus size: 18
6952637 ATATTTAAAC
6952647 ATAATTATAATT-AAATAT
1 ATAATT-TAATTAAAATAT
6952665 AT--TTTAATTAAAATAT
1 ATAATTTAATTAAAATAT
6952681 ATAATTTAA-TAAAAT
1 ATAATTTAATTAAAAT
6952696 TCTTATAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
15 5 0.18
16 10 0.36
17 6 0.21
18 7 0.25
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
ATAATTTAATTAAAATAT
Found at i:6952843 original size:18 final size:17
Alignment explanation
Indices: 6952816--6952850 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
6952806 ATTATTTTAA
*
6952816 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
6952834 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
6952851 TCTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:6952875 original size:136 final size:138
Alignment explanation
Indices: 6952734--6952998 Score: 408
Period size: 136 Copynumber: 1.9 Consensus size: 138
6952724 TAAATGATTA
* * *
6952734 TTGTTAATGTTATTTAAATTTTAATAAGATTATTATTATCAGTAATAAATATTTTAATCATATTT
1 TTGTTAATGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTT
* *
6952799 AAACATAATTATT-TTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTT-ATAATTA
66 AAACATAATTATTATTAAATACATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
6952862 GCAGAAAT
131 GCAGAAAT
* * *
6952870 TTGTTATTGTTATTTAAATTTTTATAAGATTATTAATATCAATAATAAATAATTTAATCGTATTT
1 TTGTTAATGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTT
****
6952935 AAACATAATTATTATTAAATACATTATAATTTTGGTATATAATTTAATAAAATTCTTAATAATT
66 AAACATAATTATTATTAAATACATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATT
6952999 CATATTCTTA
Statistics
Matches: 115, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
136 72 0.63
137 37 0.32
138 6 0.05
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.48
Consensus pattern (138 bp):
TTGTTAATGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTT
AAACATAATTATTATTAAATACATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
GCAGAAAT
Found at i:6952903 original size:156 final size:156
Alignment explanation
Indices: 6952548--6952868 Score: 572
Period size: 156 Copynumber: 2.1 Consensus size: 156
6952538 TAGAATACCC
* * * * *
6952548 TTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTC
1 TTAGCAGAAAATTATTTTGGTAAATAATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
6952613 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAA
6952678 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
*
6952704 TTAGCAGAAAATTATTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTATTTTGGTAAATAATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
*
6952769 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTAT-TTTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAA
6952833 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
6952859 TTAGCAGAAA
1 TTAGCAGAAA
6952869 TTTGTTATTG
Statistics
Matches: 160, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
155 57 0.36
156 103 0.64
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.46
Consensus pattern (156 bp):
TTAGCAGAAAATTATTTTGGTAAATAATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAA
TATATAATTTAATAAAATTCTTATAA
Found at i:6956475 original size:30 final size:29
Alignment explanation
Indices: 6956419--6956475 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
6956409 ATATTGGGCC
*
6956419 TTGGGTTTGGGTTGCTGGGTTAGGCTTAG
1 TTGGGTTTGGGTTGCTGAGTTAGGCTTAG
* *
6956448 TTGGGTATTGGGTTGCTGATTTGGGCTT
1 TTGGGT-TTGGGTTGCTGAGTTAGGCTT
6956476 TGGTTTGTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 6 0.25
30 18 0.75
ACGTcount: A:0.07, C:0.07, G:0.42, T:0.44
Consensus pattern (29 bp):
TTGGGTTTGGGTTGCTGAGTTAGGCTTAG
Found at i:6958904 original size:33 final size:33
Alignment explanation
Indices: 6958865--6958974 Score: 136
Period size: 33 Copynumber: 3.3 Consensus size: 33
6958855 ATTATAAAGC
6958865 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
* *
6958898 ATGTATAATTGACCTAAAATTACTTGTTGGTTT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
* *
6958931 AATGT-T-ATTGTCCCTAAAA-AACATTGTTGGTGT
1 -ATGTATAATTG-ACCTAAAATTA-ATTGTTGGTGT
6958964 ATGTATAATTG
1 ATGTATAATTG
6958975 TTGGTTTAAT
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
32 9 0.14
33 49 0.74
34 8 0.12
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.43
Consensus pattern (33 bp):
ATGTATAATTGACCTAAAATTAATTGTTGGTGT
Found at i:6958981 original size:51 final size:51
Alignment explanation
Indices: 6958921--6959023 Score: 190
Period size: 51 Copynumber: 2.0 Consensus size: 51
6958911 CTAAAATTAC
6958921 TTGTTGGTTTAATGTTATTGT-CCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATT-TACCCTAAAAAACATTGTTGGTGTATGTATAA
6958972 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
6959023 T
1 T
6959024 CTTTTAATTT
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
50 1 0.02
51 50 0.98
ACGTcount: A:0.28, C:0.08, G:0.18, T:0.46
Consensus pattern (51 bp):
TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
Found at i:6969993 original size:17 final size:18
Alignment explanation
Indices: 6969955--6969998 Score: 63
Period size: 17 Copynumber: 2.4 Consensus size: 18
6969945 TATTTTCAAG
*
6969955 AAAATATAATAATAAATTA
1 AAAATAT-ATAATAAATAA
6969974 AAAATATATAA-AAATAA
1 AAAATATATAATAAATAA
6969991 AAAATATA
1 AAAATATA
6969999 GTTGGCAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 13 0.54
18 4 0.17
19 7 0.29
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (18 bp):
AAAATATATAATAAATAA
Found at i:6970101 original size:25 final size:24
Alignment explanation
Indices: 6970073--6970121 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 24
6970063 ATTTAAATTT
*
6970073 TATATTAATATTAAATAAATATAAA
1 TATATTAATACTAAATAAA-ATAAA
6970098 TATATTAATACTAAATAAAATAAA
1 TATATTAATACTAAATAAAATAAA
6970122 AATCCCCCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 5 0.22
25 18 0.78
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (24 bp):
TATATTAATACTAAATAAAATAAA
Found at i:6970102 original size:19 final size:20
Alignment explanation
Indices: 6970080--6970119 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
6970070 TTTTATATTA
6970080 ATATTAA-A-TAAATATAAAT
1 ATATTAATACTAAATA-AAAT
6970099 ATATTAATACTAAATAAAAT
1 ATATTAATACTAAATAAAAT
6970119 A
1 A
6970120 AAAATCCCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.37
20 6 0.32
21 6 0.32
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (20 bp):
ATATTAATACTAAATAAAAT
Found at i:6970529 original size:12 final size:12
Alignment explanation
Indices: 6970507--6970549 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
6970497 AAAACATTTT
6970507 ATTTCAAAATATA
1 ATTT-AAAATATA
6970520 ATTTAAAATA-A
1 ATTTAAAATATA
*
6970531 ATTTTTAAATATA
1 A-TTTAAAATATA
6970544 ATTTAA
1 ATTTAA
6970550 TATAAAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
11 2 0.08
12 18 0.69
13 6 0.23
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (12 bp):
ATTTAAAATATA
Found at i:6970620 original size:29 final size:29
Alignment explanation
Indices: 6970588--6970673 Score: 83
Period size: 29 Copynumber: 3.1 Consensus size: 29
6970578 TAAATTATAT
6970588 ATTATTTTATTAAATTATATTTAATAACA
1 ATTATTTTATTAAATTATATTTAATAACA
* **
6970617 ATTA---TATTAAAATATGA-TTAA-AGTA
1 ATTATTTTATTAAATTAT-ATTTAATAACA
*
6970642 TTTATTATTATTAAATTATATTTAATAACA
1 ATTATT-TTATTAAATTATATTTAATAACA
6970672 AT
1 AT
6970674 CCTATTAAAT
Statistics
Matches: 42, Mismatches: 8, Indels: 13
0.67 0.13 0.21
Matches are distributed among these distances:
25 5 0.12
26 14 0.33
27 1 0.02
28 1 0.02
29 18 0.43
30 3 0.07
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (29 bp):
ATTATTTTATTAAATTATATTTAATAACA
Found at i:6970625 original size:26 final size:26
Alignment explanation
Indices: 6970595--6970684 Score: 90
Period size: 26 Copynumber: 3.3 Consensus size: 26
6970585 TATATTATTT
6970595 TATTAAATTATATTTAATAACAATTA
1 TATTAAATTATATTTAATAACAATTA
* * ***
6970621 TATTAAAATATGATTAAAGTATTTATTA
1 TATTAAATTAT-ATTTAA-TAACAATTA
**
6970649 TTATTAAATTATATTTAATAACAATCC
1 -TATTAAATTATATTTAATAACAATTA
6970676 TATTAAATT
1 TATTAAATT
6970685 TTAATAACAA
Statistics
Matches: 49, Mismatches: 12, Indels: 6
0.73 0.18 0.09
Matches are distributed among these distances:
26 19 0.39
27 9 0.18
28 11 0.22
29 10 0.20
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (26 bp):
TATTAAATTATATTTAATAACAATTA
Found at i:6970670 original size:55 final size:56
Alignment explanation
Indices: 6970558--6970682 Score: 171
Period size: 55 Copynumber: 2.2 Consensus size: 56
6970548 AATATAAAAT
* * *
6970558 AATTATATTAAGAATGTTATTAAATTATATATTATTTTATTAAATTATATTTAATAAC
1 AATTATATTAA-AATATGATTAAAGTATATATTA-TTTATTAAATTATATTTAATAAC
*
6970616 AATTATATTAAAATATGATTAAAGTATTTATTA-TTATTAAATTATATTTAATAAC
1 AATTATATTAAAATATGATTAAAGTATATATTATTTATTAAATTATATTTAATAAC
**
6970671 AATCCTATTAAA
1 AATTATATTAAA
6970683 TTTTAATAAC
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
55 32 0.52
57 18 0.30
58 11 0.18
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.47
Consensus pattern (56 bp):
AATTATATTAAAATATGATTAAAGTATATATTATTTATTAAATTATATTTAATAAC
Found at i:6970868 original size:16 final size:16
Alignment explanation
Indices: 6970847--6970886 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
6970837 TGAATTACTG
* *
6970847 ATTATAGCTTTATTTC
1 ATTATAGCTCTATTCC
6970863 ATTATAGCTCTATTCC
1 ATTATAGCTCTATTCC
*
6970879 CTTATAGC
1 ATTATAGC
6970887 AAATCAAACG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.25, C:0.20, G:0.07, T:0.47
Consensus pattern (16 bp):
ATTATAGCTCTATTCC
Found at i:6971262 original size:22 final size:22
Alignment explanation
Indices: 6971231--6971281 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
6971221 TAAACCTTTT
* *
6971231 TTTTGTTGTTGCTTTACTGTCA
1 TTTTGCTGTTGCTTTACTATCA
** *
6971253 TTTTGCTGTTTTTTTTCTATCA
1 TTTTGCTGTTGCTTTACTATCA
6971275 TTTTGCT
1 TTTTGCT
6971282 ATTATATTGC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.08, C:0.14, G:0.14, T:0.65
Consensus pattern (22 bp):
TTTTGCTGTTGCTTTACTATCA
Found at i:6971553 original size:20 final size:21
Alignment explanation
Indices: 6971515--6971555 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
6971505 TAGTCTATTT
6971515 TCAAAAAGGTTTATAAGTTTA
1 TCAAAAAGGTTTATAAGTTTA
6971536 TCAAAAACGGTTT-T-AGTTTA
1 TCAAAAA-GGTTTATAAGTTTA
6971556 ACTTTCCTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.32
21 8 0.42
22 5 0.26
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (21 bp):
TCAAAAAGGTTTATAAGTTTA
Found at i:6974656 original size:21 final size:21
Alignment explanation
Indices: 6974632--6974681 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
6974622 TTTACCTAAG
*
6974632 ATATAAATTGAATTGAATTGA
1 ATATAAATTGAATTAAATTGA
* *
6974653 ATATGAATTGTATTAAATTGA
1 ATATAAATTGAATTAAATTGA
*
6974674 GT-TAAATT
1 ATATAAATT
6974682 TACTTGTATA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
20 5 0.21
21 19 0.79
ACGTcount: A:0.44, C:0.00, G:0.14, T:0.42
Consensus pattern (21 bp):
ATATAAATTGAATTAAATTGA
Found at i:6976852 original size:21 final size:18
Alignment explanation
Indices: 6976824--6976880 Score: 69
Period size: 18 Copynumber: 3.0 Consensus size: 18
6976814 CTTTACACCA
6976824 CATTGTGGATAAACCACT
1 CATTGTGGATAAACCACT
**
6976842 CATCGTTGTGGACGAACCACT
1 CA---TTGTGGATAAACCACT
6976863 CATTGTGGATAAACCACT
1 CATTGTGGATAAACCACT
6976881 AGTAATAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
18 16 0.50
21 16 0.50
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (18 bp):
CATTGTGGATAAACCACT
Found at i:6977065 original size:22 final size:22
Alignment explanation
Indices: 6977035--6977113 Score: 79
Period size: 24 Copynumber: 3.5 Consensus size: 22
6977025 TTTCTATTAT
*
6977035 AGTGTAGATAAACCACTCAAAC
1 AGTGCAGATAAACCACTCAAAC
*
6977057 AGTGCAGATAAAATCTACTCAAAC
1 AGTGCAGAT-AAA-CCACTCAAAC
* **
6977081 GGTGTGGATAAACCACTC-AAC
1 AGTGCAGATAAACCACTCAAAC
*
6977102 GGTGCAGATAAA
1 AGTGCAGATAAA
6977114 TTGTTCAACT
Statistics
Matches: 47, Mismatches: 8, Indels: 5
0.78 0.13 0.08
Matches are distributed among these distances:
21 13 0.28
22 13 0.28
23 6 0.13
24 15 0.32
ACGTcount: A:0.42, C:0.20, G:0.19, T:0.19
Consensus pattern (22 bp):
AGTGCAGATAAACCACTCAAAC
Found at i:6982637 original size:109 final size:108
Alignment explanation
Indices: 6982442--6982782 Score: 465
Period size: 109 Copynumber: 3.1 Consensus size: 108
6982432 TGGATTAAGA
* *
6982442 TTTAAGAGGATATTTGGCTATTTGGTCCAACGAG--AAATCGAAACCCAGCA-CATTAGGGCACG
1 TTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAG-AGCATTAGGGCACG
** * *
6982504 TTTTCTCGAATTTTCGAACGCAAAACATTGCCTTATTTTGAAAT
65 TTTTCTCGAATTCCCAAACGCAAAACATTGCCTTACTTTGAAAT
* *
6982548 TTCTAAAAGGATATTTGGCTATTTGGTCGAATGAGAAAAATCGAAACCCAGAGCATTAGGGCAGG
1 TT-TAAAAGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGAGCATTAGGGCACG
*
6982613 TTTTCTCAAATTCCCAAACGCAAAACATTGCCTTACTTTGAAAAT
65 TTTTCTCGAATTCCCAAACGCAAAACATTGCCTTACTTTG-AAAT
** *
6982658 TTTAAAATTATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCGCATTAGGGCACGT
1 TTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGAGCATTAGGGCACGT
* *
6982723 TTTCTCGAA-TCTCTAAACGCAAAACATTGTCTTACTTTGAAATTTT
66 TTTCTCGAATTC-CCAAACGCAAAACATTGCCTTACTTTGAAA---T
6982769 TTTAAAAGGATATT
1 TTTAAAAGGATATT
6982783 AATATGCATA
Statistics
Matches: 207, Mismatches: 19, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
106 2 0.01
107 29 0.14
108 6 0.03
109 151 0.73
110 6 0.03
111 13 0.06
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (108 bp):
TTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGAGCATTAGGGCACGT
TTTCTCGAATTCCCAAACGCAAAACATTGCCTTACTTTGAAAT
Found at i:6984092 original size:12 final size:12
Alignment explanation
Indices: 6984075--6984125 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
6984065 TATATATATT
6984075 AAAATAAAAAGA
1 AAAATAAAAAGA
*
6984087 AAAATAAATAGA
1 AAAATAAAAAGA
* *
6984099 GTAAA-AAGAAGTA
1 -AAAATAAAAAG-A
6984112 AAAATAAAAAGA
1 AAAATAAAAAGA
6984124 AA
1 AA
6984126 CCCTTAGATC
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
12 21 0.70
13 9 0.30
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (12 bp):
AAAATAAAAAGA
Found at i:6984920 original size:88 final size:88
Alignment explanation
Indices: 6984801--6985058 Score: 374
Period size: 88 Copynumber: 2.9 Consensus size: 88
6984791 GATTTGTGGT
* * * * * * **
6984801 TTAAATTTACTTCACTACTACCTTGGGAAGATAAGATTCACCGTCTTTGATCCCCTCCACTACTG
1 TTAAATATACTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTG
*
6984866 CTTAGGGAGACATGACT-AATGGC
66 CTTAGGGAGACA-GAATCAATGGC
* *
6984889 TTAAATATATTTTTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTG
1 TTAAATATACTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTG
*
6984954 CTTAGGGAGATAGAATCAATGGC
66 CTTAGGGAGACAGAATCAATGGC
*
6984977 TTAAATATGCTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTG
1 TTAAATATACTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTG
*
6985042 CTTAGGGAGATAGAATC
66 CTTAGGGAGACAGAATC
6985059 TGCAATCTTC
Statistics
Matches: 154, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
87 3 0.02
88 151 0.98
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (88 bp):
TTAAATATACTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTG
CTTAGGGAGACAGAATCAATGGC
Found at i:6985079 original size:44 final size:44
Alignment explanation
Indices: 6985031--6985230 Score: 155
Period size: 44 Copynumber: 4.5 Consensus size: 44
6985021 CTTCGATCTG
6985031 CTCCACTACTGCTTAGGGAGATAGAATCTGCAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGAGATAGAATCTGCAATCTTCAACCTA
* * * *
6985075 CTCCACTACCGCTTAGGGAGATA-AGA-CT--AATGGCTTAAATATGCTT
1 CTCCACTACTGCTTAGGGAGATAGA-ATCTGCAAT--CTT-CA-A-CCTA
* * * * * *
6985121 CTCCACTA-T-CTT-GGGAAGATAAGATTC-ACCATCTTCGATCTG
1 CTCCACTACTGCTTAGGG-AGAT-AGAATCTGCAATCTTCAACCTA
* *
6985163 CTCCACTACTACTTAGGGAGACAGAATCTGCAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGAGATAGAATCTGCAATCTTCAACCTA
*
6985207 CTTCACTACTGCTTAGGGAGATAG
1 CTCCACTACTGCTTAGGGAGATAG
6985231 GACTAGTGGC
Statistics
Matches: 119, Mismatches: 21, Indels: 32
0.69 0.12 0.19
Matches are distributed among these distances:
41 3 0.03
42 10 0.08
43 16 0.13
44 68 0.57
45 8 0.07
46 12 0.10
47 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (44 bp):
CTCCACTACTGCTTAGGGAGATAGAATCTGCAATCTTCAACCTA
Found at i:6985154 original size:132 final size:132
Alignment explanation
Indices: 6984943--6985242 Score: 521
Period size: 132 Copynumber: 2.3 Consensus size: 132
6984933 CTTCGATCTG
*
6984943 CTCCACTACTGCTTAGGGAGAT-AGAATCAATGGCTTAAATATGCTTCTCCACTATCTTGGGAAG
1 CTCCACTACTGCTTAGGGAGATAAGACT-AATGGCTTAAATATGCTTCTCCACTATCTTGGGAAG
* *
6985007 ATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGAATCTGCAATCTTCAAC
65 ATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGAGACAGAATCTGCAATCTTCAAC
6985072 CTA
130 CTA
*
6985075 CTCCACTACCGCTTAGGGAGATAAGACTAATGGCTTAAATATGCTTCTCCACTATCTTGGGAAGA
1 CTCCACTACTGCTTAGGGAGATAAGACTAATGGCTTAAATATGCTTCTCCACTATCTTGGGAAGA
6985140 TAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGAGACAGAATCTGCAATCTTCAACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGAGACAGAATCTGCAATCTTCAACC
6985205 TA
131 TA
* * *
6985207 CTTCACTACTGCTTAGGGAGATAGGACTAGTGGCTT
1 CTCCACTACTGCTTAGGGAGATAAGACTAATGGCTT
6985243 CCCCGATCTA
Statistics
Matches: 159, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
132 155 0.97
133 4 0.03
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (132 bp):
CTCCACTACTGCTTAGGGAGATAAGACTAATGGCTTAAATATGCTTCTCCACTATCTTGGGAAGA
TAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGAGACAGAATCTGCAATCTTCAACC
TA
Found at i:6994778 original size:43 final size:43
Alignment explanation
Indices: 6994717--6994802 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
6994707 TATTCTCTTA
6994717 GCCTAAGGATGTTATCATTAATCCTTTTACTCTGCCACCCATG
1 GCCTAAGGATGTTATCATTAATCCTTTTACTCTGCCACCCATG
6994760 GCCTAAGGATGTTATCATTAATCCTTTTACTCTGCCACCCATG
1 GCCTAAGGATGTTATCATTAATCCTTTTACTCTGCCACCCATG
6994803 ATATTTGGGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.23, C:0.28, G:0.14, T:0.35
Consensus pattern (43 bp):
GCCTAAGGATGTTATCATTAATCCTTTTACTCTGCCACCCATG
Found at i:6996008 original size:16 final size:16
Alignment explanation
Indices: 6995987--6996021 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
6995977 TTTTATAATG
**
6995987 AAATGCCATGTAGTCA
1 AAATGCCATCCAGTCA
6996003 AAATGCCATCCAGTCA
1 AAATGCCATCCAGTCA
6996019 AAA
1 AAA
6996022 CAAAACAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.43, C:0.23, G:0.14, T:0.20
Consensus pattern (16 bp):
AAATGCCATCCAGTCA
Found at i:6997258 original size:109 final size:109
Alignment explanation
Indices: 6996955--6997276 Score: 500
Period size: 109 Copynumber: 3.0 Consensus size: 109
6996945 GATTTAAGAG
* * *
6996955 GATATTTGGCTATTTGGTCGAACGAAAAAAATCGAAACTCAGCACATTAGGGCACGTTTTCTCGA
1 GATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCGCATTAGGGCACGTTTTCTCGA
* * *
6997020 ATTTCCAAACGCAAAACATTACCTTATTTTGAAAGTTTTAAAAA
66 ATTTCCAAACGCAAAACATTGCCTTACTTTGAAATTTTTAAAAA
* *
6997064 GATATTTGGCTATTTGGTCGAACAAGAAAAATCGAAACCCAGCGCATTAGGGCACGTTTTCTTGA
1 GATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCGCATTAGGGCACGTTTTCTCGA
* * * * *
6997129 ATTTTCAAACGCAAAACATTGCCTCACCTTGAACTTTTTAAAAT
66 ATTTCCAAACGCAAAACATTGCCTTACTTTGAAATTTTTAAAAA
6997173 GATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCGCATTAGGGCACGTTTTCTCGA
1 GATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCGCATTAGGGCACGTTTTCTCGA
* * *
6997238 ATCTCCAAACGCAAAACATTGTCTTACTTTGAATTTTTT
66 ATTTCCAAACGCAAAACATTGCCTTACTTTGAAATTTTT
6997277 TTAAAAGGAT
Statistics
Matches: 192, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
109 192 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (109 bp):
GATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCGCATTAGGGCACGTTTTCTCGA
ATTTCCAAACGCAAAACATTGCCTTACTTTGAAATTTTTAAAAA
Found at i:6997530 original size:14 final size:14
Alignment explanation
Indices: 6997513--6997543 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
6997503 AAGTAAAAGT
*
6997513 AAAAATAAAACTAA
1 AAAAATAAAAATAA
6997527 AAAAATAAAAATAA
1 AAAAATAAAAATAA
6997541 AAA
1 AAA
6997544 TCTATGTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.84, C:0.03, G:0.00, T:0.13
Consensus pattern (14 bp):
AAAAATAAAAATAA
Found at i:7004691 original size:45 final size:45
Alignment explanation
Indices: 7004640--7004732 Score: 177
Period size: 45 Copynumber: 2.1 Consensus size: 45
7004630 AGTAAAAGAT
*
7004640 ACACAAATAACCAGCCAAAGGCACACCCAAATGTTCGACACAACA
1 ACACAAATAACCAACCAAAGGCACACCCAAATGTTCGACACAACA
7004685 ACACAAATAACCAACCAAAGGCACACCCAAATGTTCGACACAACA
1 ACACAAATAACCAACCAAAGGCACACCCAAATGTTCGACACAACA
7004730 ACA
1 ACA
7004733 TATTTATAGG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.48, C:0.33, G:0.10, T:0.09
Consensus pattern (45 bp):
ACACAAATAACCAACCAAAGGCACACCCAAATGTTCGACACAACA
Found at i:7006349 original size:18 final size:17
Alignment explanation
Indices: 7006328--7006362 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7006318 TTATTATTAA
*
7006328 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
7006346 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
7006363 TCTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:7006499 original size:156 final size:157
Alignment explanation
Indices: 7006215--7006530 Score: 571
Period size: 156 Copynumber: 2.0 Consensus size: 157
7006205 TAGAATACCC
*
7006215 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTATTATTTAAATTTTAATAAGATTATTA
1 TTAGCAAAAATTTGTTTTGGTAAATGATTATTGTTATTATTATTTAAATTTTAATAAGATTATTA
* *
7006280 TTATCAATAATAAATAATTTAATAATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 ATATCAATAATAAATAATTTAATAATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
7006345 TATATAATTTAATAAAATTCTT-ATAA
131 TATATAATTTAATAAAATTCTTAATAA
* *
7006371 TTAGCAAAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAAAAATTTGTTTTGGTAAATGATTATTGTTATTATTATTTAAATTTTAATAAGATTATTA
*
7006436 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
66 ATATCAATAATAAATAATTTAATAATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
7006501 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
7006528 TTA
1 TTA
7006531 ATATTCTTAT
Statistics
Matches: 153, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
156 146 0.95
157 7 0.05
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.47
Consensus pattern (157 bp):
TTAGCAAAAATTTGTTTTGGTAAATGATTATTGTTATTATTATTTAAATTTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATAATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:7006501 original size:16 final size:16
Alignment explanation
Indices: 7006464--7006505 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
7006454 TTAATCATAT
*
7006464 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
7006480 TT-AAATATATTATAA
1 TTAAAATATATTATAA
7006495 TTAAAATATAT
1 TTAAAATATAT
7006506 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:7006512 original size:14 final size:15
Alignment explanation
Indices: 7006473--7006514 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
7006463 TTTAAACATA
*
7006473 ATTATTATTAAATAT
1 ATTATAATTAAATAT
7006488 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
7006502 A-TATAATTTAATA
1 ATTATAATTAAATA
7006515 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:7006592 original size:120 final size:121
Alignment explanation
Indices: 7006462--7006752 Score: 473
Period size: 120 Copynumber: 2.4 Consensus size: 121
7006452 ATTTAATCAT
*
7006462 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
7006527 ATTAATATTCTTATACGAATTTACTCAAATCATAATATATGATACTGTAAAAT-ATAA
66 ATTAATATTCTTATACGAATTTACTCAAATCATAATATATGATACTGT-AAATGA-AA
*
7006584 A-TT-AACATAATTATTATTAAATATATTATAATTAAAATATATAACTTAATAAAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
* *
7006647 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATATTGTAAATGAAA
66 ATTAATATTCTTATACGAATTTACTCAAATCATAATATATGATACTGTAAATGAAA
* * *
7006703 ATTTGAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAA
7006753 AATAATTTAA
Statistics
Matches: 159, Mismatches: 7, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
119 7 0.04
120 147 0.92
121 4 0.03
122 1 0.01
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (121 bp):
ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
ATTAATATTCTTATACGAATTTACTCAAATCATAATATATGATACTGTAAATGAAA
Found at i:7006623 original size:16 final size:16
Alignment explanation
Indices: 7006583--7006625 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
7006573 GTAAAATATA
*
7006583 AATTAACATA-ATTAT
1 AATTAAAATATATTAT
*
7006598 TATT-AAATATATTAT
1 AATTAAAATATATTAT
7006613 AATTAAAATATAT
1 AATTAAAATATAT
7006626 AACTTAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
14 4 0.17
15 11 0.48
16 8 0.35
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
AATTAAAATATATTAT
Found at i:7006846 original size:24 final size:25
Alignment explanation
Indices: 7006800--7006847 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
7006790 TATGAATTTG
7006800 TATAATTTAAAATAATAATTATTACA
1 TATAATTTAAAAT-ATAATTATTACA
7006826 TATAATTTAATAAT-TAA-TATTA
1 TATAATTTAA-AATATAATTATTA
7006848 AATTTCATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 5 0.24
25 3 0.14
26 10 0.48
27 3 0.14
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (25 bp):
TATAATTTAAAATATAATTATTACA
Found at i:7006875 original size:92 final size:91
Alignment explanation
Indices: 7006775--7006983 Score: 260
Period size: 92 Copynumber: 2.3 Consensus size: 91
7006765 TAATTATAAC
* * *
7006775 TAATAAATTATATTTTATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATTTAATAA
1 TAATAAATTATATTTTATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTTAAT-A
* *
7006839 TTAATAT-TAAATTTCATAAAATTCTTGA
64 GTAATATAT-AATTTCATAAAATTCTTAA
* * *
7006867 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGT
1 TAATAAATTATATTTTATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGT
*
7006932 GATATATAATTTCATAAAATTCTTAA
66 AATATATAATTTCATAAAATTCTTAA
* * *
7006958 TAATAAAATGTTTTTATATGAATTTA
1 TAATAAATTATATTT-TATGAATTTA
7006984 CTAAAATCAA
Statistics
Matches: 101, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
91 35 0.35
92 63 0.62
93 3 0.03
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.46
Consensus pattern (91 bp):
TAATAAATTATATTTTATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGT
AATATATAATTTCATAAAATTCTTAA
Found at i:7011809 original size:13 final size:13
Alignment explanation
Indices: 7011791--7011817 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7011781 TAAAAACAAC
7011791 TATATTGTTTAAA
1 TATATTGTTTAAA
7011804 TATATTGTTTAAA
1 TATATTGTTTAAA
7011817 T
1 T
7011818 TAAACCGGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (13 bp):
TATATTGTTTAAA
Found at i:7013944 original size:98 final size:98
Alignment explanation
Indices: 7013775--7013969 Score: 381
Period size: 98 Copynumber: 2.0 Consensus size: 98
7013765 ATACAATAAA
7013775 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
7013840 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
*
7013873 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
7013938 CCTTTAGAATCCCAAACTCGGAATATTTCCTT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTT
7013970 CATGATTTTT
Statistics
Matches: 96, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
98 96 1.00
ACGTcount: A:0.36, C:0.26, G:0.11, T:0.27
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
Found at i:7014652 original size:24 final size:25
Alignment explanation
Indices: 7014623--7014671 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
7014613 ATATAAATAT
7014623 GAAAATATTC-ATTAAAAAATATAG
1 GAAAATATTCGATTAAAAAATATAG
*
7014647 GAAAATATTCGTTTTAAAAAATATA
1 GAAAATATTCG-ATTAAAAAATATA
7014672 TATACATGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 10 0.45
26 12 0.55
ACGTcount: A:0.55, C:0.04, G:0.08, T:0.33
Consensus pattern (25 bp):
GAAAATATTCGATTAAAAAATATAG
Found at i:7015445 original size:19 final size:19
Alignment explanation
Indices: 7015421--7015533 Score: 199
Period size: 19 Copynumber: 5.8 Consensus size: 19
7015411 AATCATATAT
7015421 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
7015440 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
7015459 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
7015480 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
7015499 TCTAGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
7015518 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
7015534 CTCAAAAATT
Statistics
Matches: 90, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
19 71 0.79
21 19 0.21
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:7015486 original size:40 final size:38
Alignment explanation
Indices: 7015414--7015533 Score: 199
Period size: 40 Copynumber: 3.2 Consensus size: 38
7015404 ATTACAAAAT
7015414 CATAT-AT-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
7015450 CATATCATATCTAAGATTGCATATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGC--ATATCATATCTAAGATTG
*
7015490 CATATCATATCTAGGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
7015528 CATATC
1 CATATC
7015534 CTCAAAAATT
Statistics
Matches: 79, Mismatches: 1, Indels: 6
0.92 0.01 0.07
Matches are distributed among these distances:
36 5 0.06
37 2 0.03
38 35 0.44
40 37 0.47
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (38 bp):
CATATCATATCTAAGATTGCATATCATATCTAAGATTG
Found at i:7015488 original size:59 final size:59
Alignment explanation
Indices: 7015421--7015532 Score: 215
Period size: 59 Copynumber: 1.9 Consensus size: 59
7015411 AATCATATAT
7015421 TCTAAGATTGCATATCATATCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
*
7015480 TCTAAGATTGCATATCATATCTAGGATTGCATATCATATCTAAGATTGCATAT
1 TCTAAGATTGCATATCATATCTAAGATTGCATATCATATCTAAGATTGCATAT
7015533 CCTCAAAAAT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 52 1.00
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.38
Consensus pattern (59 bp):
TCTAAGATTGCATATCATATCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
Found at i:7015856 original size:44 final size:44
Alignment explanation
Indices: 7015750--7016262 Score: 350
Period size: 44 Copynumber: 11.9 Consensus size: 44
7015740 GACTTGCTTG
* * *
7015750 TTTAGTCTGCTTCACTGCAACTTCAGGGAGATAAGA-CT-A-GA
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTAAGGT
*** * *
7015791 TGCGATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTAAGGT
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTAAGGT
* * *
7015834 TTTAAT-TCGCTCCACTGCAACTTCAGGGAGATAGGAT-TATCGGG
1 TTTAATCT-GCTCCACTGCAACTTCAGGGAGATAAGATCTA-AGGT
* * * *
7015878 TTTAATCTACTCCACTACAACTTCAGGGAGATAAGA-CT-TGCT
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTAAGGT
* * *
7015920 TACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGAT-T--TGA
1 T--TTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTAAGGT
*** * *
7015963 TGCGATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTAAGGT
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTAAGGT
* **
7016006 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGAT-TATCGT
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTAAGGT
* *
7016049 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-CT-TGCCAT
1 -TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTAAG--GT
* * * * * * *
7016094 CTTCAGTCTGCCCCACTGCAACTTGA-AGAGCATAAGA-CT-TGCT
1 -TTTAATCTGCTCCACTGCAACTTCAGGGAG-ATAAGATCTAAGGT
* * *
7016137 TACTTAGTCTGCTCCACTGCAACTTCAGGAAGATAAGA-CT-A-GA
1 T--TTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTAAGGT
*** * * *
7016180 TGCGATCTACT-CTCTGCAACTTCAGAGAGATAAGATCTAAGGT
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTAAGGT
** *
7016223 TTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATCTA
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTA
7016263 CAATCTTCAA
Statistics
Matches: 369, Mismatches: 76, Indels: 51
0.74 0.15 0.10
Matches are distributed among these distances:
40 66 0.18
41 23 0.06
42 6 0.02
43 34 0.09
44 204 0.55
45 36 0.10
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (44 bp):
TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTAAGGT
Found at i:7015980 original size:128 final size:128
Alignment explanation
Indices: 7015848--7016085 Score: 338
Period size: 128 Copynumber: 1.9 Consensus size: 128
7015838 ATTCGCTCCA
* * *
7015848 CTGCAACTTCAGGGAGATAGGAT-TATCGGGTTTAATCTACTCCACTACAACTTCAGGGAGATAA
1 CTGCAACTTCAGAGAGATAAGATCTA-AGGGTTTAATCTACTCCACTACAACTTCAGGGAGATAA
* *
7015912 GACTT-GCTTAC-TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATGCGATCTGCTC
65 GA-TTAGCGT-CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATGCGATCTGCTC
7015975 T
128 T
* * * *
7015976 CTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGG
1 CTGCAACTTCAGAGAGATAAGATCTAAGGGTTTAATCTACTCCACTACAACTTCAGGGAGATAAG
*
7016041 ATTATCGTCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
66 ATTAGCGTCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
7016086 CTTGCCATCT
Statistics
Matches: 97, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
127 3 0.03
128 92 0.95
129 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.29
Consensus pattern (128 bp):
CTGCAACTTCAGAGAGATAAGATCTAAGGGTTTAATCTACTCCACTACAACTTCAGGGAGATAAG
ATTAGCGTCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATGCGATCTGCTCT
Found at i:7016009 original size:172 final size:172
Alignment explanation
Indices: 7015705--7016255 Score: 647
Period size: 172 Copynumber: 3.2 Consensus size: 172
7015695 TTAGTGTCAT
* ** *
7015705 CTTTAGTCTAC-CTCACTGCAACTTCA-GGACGATAAGACTTGCTTGTTTAGTCTGCTTCACTGC
1 CTTTAATCTACTC-CACTGCAACTTCAGGGA-GATAAGACTTGCTTACTTAGTCTGCTCCACTGC
7015768 AACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGG
64 AACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGG
7015833 TTTTAAT-TCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGG
129 TTTTAATCT-GCTCCACTGCAACTTCAGGGAGATAGGATTATCGG
* *
7015877 GTTTAATCTACTCCACTACAACTTCAGGGAGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAA
1 CTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAA
* *
7015942 CTTCAGGGAGATAAGATTTGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTT
66 CTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTT
*
7016007 TTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATCGT
131 TTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATCGG
* * *
7016049 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGC-CATCTTCAGTCTGCCCCACTGC
1 CTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGCTTA-CTT-AGTCTGCTCCACTGC
* * * * * * *
7016113 AACTTGA-AGAGCATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAG-GAAGATAAGA-
64 AACTTCAGGGAG-ATAAGACTAG-ATGC-GA-TCTGCT-CTCTGCAACTTCAGAG-AGATAAGAT
* *** * * * * *
7016175 CT-A-GATGCGATCTACT-CTCTGCAACTTCAGAGAGATAAGATCTA-AGG
123 CTAAGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGAT-TATCGG
* *
7016222 TTTTAATCCACTCCACTGCAACTTCAGGGAGATA
1 CTTTAATCTACTCCACTGCAACTTCAGGGAGATA
7016256 GGATCTACAA
Statistics
Matches: 333, Mismatches: 34, Indels: 23
0.85 0.09 0.06
Matches are distributed among these distances:
171 1 0.00
172 200 0.60
173 88 0.26
174 12 0.04
175 2 0.01
176 9 0.03
177 21 0.06
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (172 bp):
CTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAA
CTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTT
TTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATCGG
Found at i:7016173 original size:217 final size:216
Alignment explanation
Indices: 7015795--7016262 Score: 656
Period size: 217 Copynumber: 2.2 Consensus size: 216
7015785 ACTAGATGCG
* * * *
7015795 ATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATTCGCTCCACTGCAACTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAGGATCTAACGTTTTAATTCGCTCCACTGCAACTTCA
* * * * * * *
7015859 GGGAGATAGGATTATCGGGTTTAATCTACTCCACTACAACTTCAGGGAGATAAGACTTGCTTACT
66 GGGAGATAAGATTACCAGCTTCAATCTACCCCACTACAACTTCAGAGAGATAAGACTTGCTTACT
* * * *
7015924 TAGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATGCGATCTGCTCTCTGCAACTTCAGA
131 TAGTCTGCTCCACTGCAACTTCAGGAAGATAAGACTAGATGCGATCTACTCTCTGCAACTTCAGA
7015989 GAGATAAGATCTAAGGTTTTA
196 GAGATAAGATCTAAGGTTTTA
*
7016010 ATCTGCTCCACTGCAACTTCAGGGAGATAGGAT-TATCGTCTTTAA-TCTGCTCCACTGCAACTT
1 ATCTGCTCCACTGCAACTTCAGGGAGATAGGATCTAACGT-TTTAATTC-GCTCCACTGCAACTT
* * * * * *
7016073 CAGGGAGATAAGACTTGCCATCTTCAGTCTGCCCCACTGCAACTTGA-AGAGCATAAGACTTGCT
64 CAGGGAGATAAGA-TTACCAGCTTCAATCTACCCCACTACAACTTCAGAGAG-ATAAGACTTGCT
7016137 TACTTAGTCTGCTCCACTGCAACTTCAGGAAGATAAGACTAGATGCGATCTACTCTCTGCAACTT
127 TACTTAGTCTGCTCCACTGCAACTTCAGGAAGATAAGACTAGATGCGATCTACTCTCTGCAACTT
7016202 CAGAGAGATAAGATCTAAGGTTTTA
192 CAGAGAGATAAGATCTAAGGTTTTA
**
7016227 ATCCACTCCACTGCAACTTCAGGGAGATAGGATCTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAGGATCTA
7016263 CAATCTTCAA
Statistics
Matches: 223, Mismatches: 24, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
215 13 0.06
216 57 0.26
217 151 0.68
218 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (216 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAGGATCTAACGTTTTAATTCGCTCCACTGCAACTTCA
GGGAGATAAGATTACCAGCTTCAATCTACCCCACTACAACTTCAGAGAGATAAGACTTGCTTACT
TAGTCTGCTCCACTGCAACTTCAGGAAGATAAGACTAGATGCGATCTACTCTCTGCAACTTCAGA
GAGATAAGATCTAAGGTTTTA
Found at i:7016371 original size:217 final size:216
Alignment explanation
Indices: 7015842--7016321 Score: 554
Period size: 217 Copynumber: 2.2 Consensus size: 216
7015832 GTTTTAATTC
* * ** * * * * * * *
7015842 GCTCCACTGCAACTTCAGGGAGATAGGA-TTATCGGGTTTAATCTACTCCACTACAACTTCAGGG
1 GCTCCACTGCAACTTCAGGGAGACAAGACTTGCCAGCTTAAATCTGCCCCACT-CAACTTGA-AG
* * * * *
7015906 AG-ATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATGCGATC
64 AGCATAAGACTCGCGTACTTAGTCTGCTCCACTGCAACTTCAGGAAGATAAGACTAGATGCGATC
* **
7015970 TGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCTGCTCCACTGCAACTTCAGGGA
129 TACTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACTTCAGGGA
* * *
7016035 GATAGGATTATCGTCTTTAATCT
194 GATAGGATTATCATCTTCAACCT
* * * *
7016058 GCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCTGCCCCACTGCAACTTGAAGA
1 GCTCCACTGCAACTTCAGGGAGACAAGACTTGCCAGCTTAAATCTGCCCCACT-CAACTTGAAGA
* *
7016123 GCATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGAAGATAAGACTAGATGCGATCT
65 GCATAAGACTCGCGTACTTAGTCTGCTCCACTGCAACTTCAGGAAGATAAGACTAGATGCGATCT
7016188 ACTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACTTCAGGGAG
130 ACTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACTTCAGGGAG
7016253 ATAGGATCTA-CAATCTTCAACCT
195 ATAGGAT-TATC-ATCTTCAACCT
* * ** * * ***
7016276 TCTCCGCTGCTGC-TGAGGGAGACAAGGCTTGGTGGCTTAAATCTGC
1 GCTCCACTGCAACTTCAGGGAGACAAGACTTGCCAGCTTAAATCTGC
7016322 TTCCCACTAT
Statistics
Matches: 225, Mismatches: 35, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
216 30 0.13
217 176 0.78
218 19 0.08
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (216 bp):
GCTCCACTGCAACTTCAGGGAGACAAGACTTGCCAGCTTAAATCTGCCCCACTCAACTTGAAGAG
CATAAGACTCGCGTACTTAGTCTGCTCCACTGCAACTTCAGGAAGATAAGACTAGATGCGATCTA
CTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACTTCAGGGAGA
TAGGATTATCATCTTCAACCT
Found at i:7016387 original size:44 final size:44
Alignment explanation
Indices: 7016339--7016825 Score: 195
Period size: 44 Copynumber: 11.1 Consensus size: 44
7016329 TATCTTGGAA
* *
7016339 AGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATCTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** * * * * *
7016383 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGG
1 AGATAAGATCTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * *
7016427 AGACAAG-GCTTGGTGGCTTAAATCTGCTTCTCACTA-T-CTT-GGAA
1 AGATAAGATC-TGCCGTCTTCAATCTGC-TC-CACTACTGCTTAGG-G
* * *
7016471 AGATAAAATCCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATCTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** * * * * *
7016515 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGG
1 AGATAAGATCTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * **
7016559 AGACAAG-GCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTTAGAA
1 AGATAAGATC-TGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGGG
* * *
7016603 AGATAAGATTTACCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATCTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** * * * * * *
7016647 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAAGG
1 AGATAAGATCTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * *
7016691 AGACAAG-GCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATC-TGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* * * *
7016735 ATATAAGATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATCTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** * * * * *
7016779 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGG
1 AGATAAGATCTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
7016823 AGA
1 AGA
7016826 CAAGGCTTGG
Statistics
Matches: 304, Mismatches: 117, Indels: 44
0.65 0.25 0.09
Matches are distributed among these distances:
42 17 0.06
43 13 0.04
44 250 0.82
45 13 0.04
46 11 0.04
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (44 bp):
AGATAAGATCTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
Found at i:7016444 original size:132 final size:132
Alignment explanation
Indices: 7016247--7016899 Score: 1180
Period size: 132 Copynumber: 4.9 Consensus size: 132
7016237 CTGCAACTTC
*
7016247 AGGGAGATAGGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
7016312 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGC
7016377 TT
131 TT
7016379 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
* *
7016444 TTAAATCTGCTTCTCACTATCTTGGAAAGATAAAATCCGCCGTCTTCGATCTGCTCCACTACTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGC
7016509 TT
131 TT
*
7016511 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
* ***
7016576 TTAAATCTGCTTCCCACTATCTTAGAAAGATAAGATTTACCGTCTTCGATCTGCTCCACTACTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGC
7016641 TT
131 TT
*
7016643 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAAGGAGACAAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
* *
7016708 TTAAATCTGCTTCCCACTATCTTGGAAATATAAGATCCGCCATCTTCGATCTGCTCCACTACTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGC
7016773 TT
131 TT
*
7016775 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
* *
7016840 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGTCGTCTTCGATCTGCTCCACT
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACT
7016900 GTCAATGCAG
Statistics
Matches: 497, Mismatches: 24, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 497 1.00
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (132 bp):
AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGC
TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGC
TT
Found at i:7017906 original size:350 final size:350
Alignment explanation
Indices: 7017265--7017968 Score: 1336
Period size: 350 Copynumber: 2.0 Consensus size: 350
7017255 CCCAAGGGTA
7017265 AAAATATCCGGCCTTTTCTCAATCCTCTGCTATCACAATTCGAAGATACATAATGCGAAACTCTT
1 AAAATATCCGGCCTTTTCTCAATCCTCTGCTATCACAATTCGAAGATACATAATGCGAAACTCTT
7017330 TGGTTTCCTACACCATTCCTAGGGTGTCATATCAAATGATCACGCACAAATGAAGGATTCTCTTC
66 TGGTTTCCTACACCATTCCTAGGGTGTCATATCAAATGATCACGCACAAATGAAGGATTCTCTTC
*
7017395 TCCAAGGAAACCCCTTCTTATTGTTTGGTGATTTAAACTTTGTCACCCATCTGACATTCGGTCAT
131 TCCAAGGAAACCCCTTCTTATTGTTTGGTGATTTAAACTTTGTCACCCATCTGACATCCGGTCAT
*
7017460 TTTGTTTGATTAATGTTTTTGAAAACAAAATCCAAAGAGATAGTCTTCATTTAGACTCTTCCTTC
196 TTTGTTTGATCAATGTTTTTGAAAACAAAATCCAAAGAGATAGTCTTCATTTAGACTCTTCCTTC
7017525 TCAGATTTCCAACCTTTAAACATGGTGCGTTCTAAACAATAGTCATGTTTCAGGCTCCTGTATTA
261 TCAGATTTCCAACCTTTAAACATGGTGCGTTCTAAACAATAGTCATGTTTCAGGCTCCTGTATTA
7017590 TTTAGAAACTTCTAGAGTAATATGC
326 TTTAGAAACTTCTAGAGTAATATGC
*
7017615 AAAATATCTGGCCTTTTCTCAATCCTCTGCTATCACAATTCGAAGATACATAATGCGAAACTCTT
1 AAAATATCCGGCCTTTTCTCAATCCTCTGCTATCACAATTCGAAGATACATAATGCGAAACTCTT
*
7017680 TGGTTTCCTACACCATTCCTAGGGTGTCATATCAAATGATCATGCACAAATGAAGGATTCTCTTC
66 TGGTTTCCTACACCATTCCTAGGGTGTCATATCAAATGATCACGCACAAATGAAGGATTCTCTTC
7017745 TCCAAGGAAACCCCTTCTTATTGTTTGGTGATTTAAACTTTGTCACCCATCTGACATCCGGTCAT
131 TCCAAGGAAACCCCTTCTTATTGTTTGGTGATTTAAACTTTGTCACCCATCTGACATCCGGTCAT
*
7017810 TTTGTTTGATCAATGTTTTTGACAACAAAATCCAAAGAGATAGTCTTCATTTAGACTCTTCCTTC
196 TTTGTTTGATCAATGTTTTTGAAAACAAAATCCAAAGAGATAGTCTTCATTTAGACTCTTCCTTC
* *
7017875 TCAGATTTCCAACCTTTAAACTTGGTGCGTTCTAAACAATAGTCCTGTTTCAGGCTCCTGTATTA
261 TCAGATTTCCAACCTTTAAACATGGTGCGTTCTAAACAATAGTCATGTTTCAGGCTCCTGTATTA
*
7017940 TTTAGAAACTTCTCGAGTAATATGC
326 TTTAGAAACTTCTAGAGTAATATGC
7017965 AAAA
1 AAAA
7017969 CTTCCTTCGT
Statistics
Matches: 346, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
350 346 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (350 bp):
AAAATATCCGGCCTTTTCTCAATCCTCTGCTATCACAATTCGAAGATACATAATGCGAAACTCTT
TGGTTTCCTACACCATTCCTAGGGTGTCATATCAAATGATCACGCACAAATGAAGGATTCTCTTC
TCCAAGGAAACCCCTTCTTATTGTTTGGTGATTTAAACTTTGTCACCCATCTGACATCCGGTCAT
TTTGTTTGATCAATGTTTTTGAAAACAAAATCCAAAGAGATAGTCTTCATTTAGACTCTTCCTTC
TCAGATTTCCAACCTTTAAACATGGTGCGTTCTAAACAATAGTCATGTTTCAGGCTCCTGTATTA
TTTAGAAACTTCTAGAGTAATATGC
Found at i:7024455 original size:98 final size:98
Alignment explanation
Indices: 7024286--7024477 Score: 366
Period size: 98 Copynumber: 2.0 Consensus size: 98
7024276 ATACAATAAA
*
7024286 ACTTTAAAAGAACATCTACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
7024351 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
*
7024384 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
7024449 CCTTTAGAATCCCAAACTCGGAATATTTC
66 CCTTTAGAATCCCAAACTCGGAATATTTC
7024478 TTTCATGATT
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
98 92 1.00
ACGTcount: A:0.36, C:0.26, G:0.11, T:0.27
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
Found at i:7025164 original size:24 final size:25
Alignment explanation
Indices: 7025135--7025183 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
7025125 ATATAAATAT
7025135 GAAAATATTCA-TTAAAAAATATAG
1 GAAAATATTCATTTAAAAAATATAG
7025159 GAAAATATTCATTTTAAAAAATATA
1 GAAAATATTCA-TTTAAAAAATATA
7025184 TATACATGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 11 0.48
26 12 0.52
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (25 bp):
GAAAATATTCATTTAAAAAATATAG
Found at i:7025279 original size:10 final size:10
Alignment explanation
Indices: 7025264--7025290 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
7025254 TTTTAAAAAA
7025264 ATATATATAC
1 ATATATATAC
7025274 ATATATATAC
1 ATATATATAC
7025284 ATATATA
1 ATATATA
7025291 AATGTGAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (10 bp):
ATATATATAC
Found at i:7025967 original size:19 final size:19
Alignment explanation
Indices: 7025943--7026074 Score: 203
Period size: 19 Copynumber: 6.8 Consensus size: 19
7025933 AATCATATAT
7025943 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
7025962 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
7025981 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
7026000 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
7026021 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
7026040 TAT-AGAATTGCATATCATA
1 TCTAAG-ATTGCATATCATA
7026059 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
7026075 CTCAAAAATT
Statistics
Matches: 103, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
18 2 0.02
19 80 0.78
20 2 0.02
21 19 0.18
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Done.