Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 24 of 207
Found at i:7026027 original size:59 final size:59
Alignment explanation
Indices: 7025936--7026073 Score: 205
Period size: 59 Copynumber: 2.4 Consensus size: 59
7025926 ATTACAAAAT
* *
7025936 CATAT-AT-TCTAAGATTGC--ATATCATATCTAAGATTATATATCATATCTA-AGATTG
1 CATATCATATCTAAGATTGCATATATCATATCTAAGATTACATATCATATATAGA-ATTG
*
7025991 CATATCATATCTAAGATTGCATATATCATATCTAAGATTGCATATCATATATAGAATTG
1 CATATCATATCTAAGATTGCATATATCATATCTAAGATTACATATCATATATAGAATTG
7026050 CATATCATATCTAAGATTGCATAT
1 CATATCATATCTAAGATTGCATAT
7026074 CCTCAAAAAT
Statistics
Matches: 75, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
55 5 0.07
56 2 0.03
57 11 0.15
59 56 0.75
60 1 0.01
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.38
Consensus pattern (59 bp):
CATATCATATCTAAGATTGCATATATCATATCTAAGATTACATATCATATATAGAATTG
Found at i:7027210 original size:6 final size:6
Alignment explanation
Indices: 7027199--7027223 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7027189 ATTGATAATA
7027199 ATTTTT ATTTTT ATTTTT ATTTTT A
1 ATTTTT ATTTTT ATTTTT ATTTTT A
7027224 AAAATATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (6 bp):
ATTTTT
Found at i:7028246 original size:6 final size:6
Alignment explanation
Indices: 7028235--7028259 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7028225 ATTGATAATA
7028235 ATTTTT ATTTTT ATTTTT ATTTTT A
1 ATTTTT ATTTTT ATTTTT ATTTTT A
7028260 AAAATATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (6 bp):
ATTTTT
Found at i:7028435 original size:16 final size:16
Alignment explanation
Indices: 7028414--7028448 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
7028404 TTTTATTTTC
7028414 ATAATAAATTTTAAA-A
1 ATAAT-AATTTTAAATA
7028430 ATAATAATTTTAAATA
1 ATAATAATTTTAAATA
7028446 ATA
1 ATA
7028449 TTCTTCTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
ATAATAATTTTAAATA
Found at i:7030337 original size:17 final size:17
Alignment explanation
Indices: 7030315--7030354 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
7030305 TAAAATTAAA
7030315 TATTTTAAATT-TATATT
1 TATTTT-AATTATATATT
7030332 TATTTTAATTATATATT
1 TATTTTAATTATATATT
*
7030349 AATTTT
1 TATTTT
7030355 TGAGAAGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TATTTTAATTATATATT
Found at i:7030468 original size:16 final size:17
Alignment explanation
Indices: 7030447--7030482 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
7030437 ACATAAAAGT
7030447 AAATAAAT-AAAGGAAG
1 AAATAAATAAAAGGAAG
7030463 AAATAAATAAAAGGAAG
1 AAATAAATAAAAGGAAG
7030480 AAA
1 AAA
7030483 ATCAATTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.72, C:0.00, G:0.17, T:0.11
Consensus pattern (17 bp):
AAATAAATAAAAGGAAG
Found at i:7031170 original size:6 final size:7
Alignment explanation
Indices: 7031152--7031176 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7031142 TTATTAATAA
7031152 ATTTTTT
1 ATTTTTT
7031159 ATTTTTT
1 ATTTTTT
7031166 ATTTTTT
1 ATTTTTT
7031173 ATTT
1 ATTT
7031177 AATTTAATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (7 bp):
ATTTTTT
Found at i:7036424 original size:22 final size:22
Alignment explanation
Indices: 7036384--7036428 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
7036374 AAACAAATTA
7036384 TCATATTTATATAATTAAATAT
1 TCATATTTATATAATTAAATAT
*
7036406 TCATATTT-TATACTATAAATAT
1 TCATATTTATATAAT-TAAATAT
7036428 T
1 T
7036429 TATAAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (22 bp):
TCATATTTATATAATTAAATAT
Found at i:7036444 original size:22 final size:22
Alignment explanation
Indices: 7036395--7036473 Score: 74
Period size: 24 Copynumber: 3.5 Consensus size: 22
7036385 CATATTTATA
*
7036395 TAAT-TAAATATTCAT--ATTT
1 TAATATAAATATTTATAAATTT
7036414 TATACTATAAATATTTATAAATTT
1 TA-A-TATAAATATTTATAAATTT
* *
7036438 TAATATATATTTATTATTAAATTT
1 TAATATAAATAT-TTA-TAAATTT
7036462 TAATATAAATAT
1 TAATATAAATAT
7036474 AAATATACTT
Statistics
Matches: 48, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
19 2 0.04
20 1 0.02
21 1 0.02
22 17 0.35
23 4 0.08
24 23 0.48
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.52
Consensus pattern (22 bp):
TAATATAAATATTTATAAATTT
Found at i:7036449 original size:12 final size:12
Alignment explanation
Indices: 7036429--7036471 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
7036419 TATAAATATT
7036429 TATAAATTTTAA
1 TATAAATTTTAA
* *
7036441 TATATA-TTTAT
1 TATAAATTTTAA
7036452 TATTAAATTTTAA
1 TA-TAAATTTTAA
7036465 TATAAAT
1 TATAAAT
7036472 ATAAATATAC
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 6 0.24
12 13 0.52
13 6 0.24
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (12 bp):
TATAAATTTTAA
Found at i:7040818 original size:29 final size:29
Alignment explanation
Indices: 7040780--7041740 Score: 790
Period size: 29 Copynumber: 35.5 Consensus size: 29
7040770 CATGGTAAGA
* * *
7040780 GTTTTCAATTAAATTAGGTTAGAGTTAGA
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
*
7040809 GATTTTAATTAAGA-TAGGTTAGGGTTAGG
1 GTTTTTAATTAA-ATTAGGTTAGGGTTAGG
* *
7040838 G-TTTTCATGTAAAATAGGTTAGGGTTAGG
1 GTTTTTAAT-TAAATTAGGTTAGGGTTAGG
*
7040867 GTTTTTAACT-AA--A--TTA-GGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
* *
7040890 GTTTTTAATTAAATTAGGATAGGGTTAGA
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
* *
7040919 GATTTTAATTAAAATAGGTTAGGGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
* * *
7040948 G-TTTTCATGTAAAATAGGTTAGGGTTAAG
1 GTTTTTAAT-TAAATTAGGTTAGGGTTAGG
*
7040977 GTTTTTAACT-AA--A--TTA-GGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
7041000 GTTTTTAATTAAATTAGGTTAGGGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
* *
7041029 GATTTTAATTAAAATAGGTTAGGGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
*
7041058 GTTTTTAACT-AA--A--TTA-GGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
*** *
7041081 GTTTTTAATTAAATTAAAATAGGGTAAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
**
7041110 GTTTTTAATTAAATTAAATTA-GGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
* *
7041138 GTTTTTAATTAAATTAGGTCAGAGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
* * *
7041167 GATTTTAATTAAAATAGGTTATGGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
* *
7041196 G-TTTTCATGTAAAATAGGTTAGGGTTA-G
1 GTTTTTAAT-TAAATTAGGTTAGGGTTAGG
*
7041224 GTTTTTAACTAAATTAGGTTA--G--A--
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
* *** *
7041247 ATTTTTAATTAAATTAAAATAGGGTAAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
* *** *
7041276 GCTTTTAATTAAATTAAAATAGGGTAAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
**
7041305 GTTTTTAATTAAATTAAATTA-GGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
7041333 GTTTTTAATT-AA--A--TTA-GGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
* **
7041356 GTTTTTACTTAAATTAAATTA-GGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
**
7041384 GTTTTTAATTAAATTAAATTA-GGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
*
7041412 GTTTTTAATT--A--A-GTTA-AGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
*
7041435 GTTTTTAATTAAAATAGGTTAGGGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
* *
7041464 G-TTTTCATGTAAAATAGGTTAGGGTTAGG
1 GTTTTTAAT-TAAATTAGGTTAGGGTTAGG
*
7041493 GTTTTTAACT-AA--A--TTA-GGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
**
7041516 GTTTTTAATTAAATTAAATTA-GGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
7041544 GTTTTTAATT-AA--A--TTA-GGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
**
7041567 GTTTTTAATTAAATTAAATTA-GGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
*
7041595 GTTTTTAATT--A--A-GTTA-AGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
*
7041618 GTTTTTAATTAAATTAGGTTAGGGTAAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
* *
7041647 GTTTTTAATTAAATTAAGTTA-GGTTAGA
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
*
7041675 GTTTTTAATT--A--A-GTTA-AGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
7041698 GTTTTTAATTAAATTAGGTTAGGGTTAGG
1 GTTTTTAATTAAATTAGGTTAGGGTTAGG
*
7041727 GTTTTTAATCAAAT
1 GTTTTTAATTAAAT
7041741 AATGTCAAAA
Statistics
Matches: 791, Mismatches: 73, Indels: 136
0.79 0.07 0.14
Matches are distributed among these distances:
23 175 0.22
24 28 0.04
25 6 0.01
26 14 0.02
27 8 0.01
28 207 0.26
29 337 0.43
30 16 0.02
ACGTcount: A:0.33, C:0.01, G:0.23, T:0.43
Consensus pattern (29 bp):
GTTTTTAATTAAATTAGGTTAGGGTTAGG
Found at i:7040887 original size:23 final size:23
Alignment explanation
Indices: 7040860--7041723 Score: 407
Period size: 23 Copynumber: 32.4 Consensus size: 23
7040850 AATAGGTTAG
*
7040860 GGTTAGGGTTTTTAACTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
7040883 GGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
* *
7040906 GGATAGGGTTAGAGATTTTAATTAAAATA
1 GGTTAGGG-T-----TTTTAATTAAATTA
*
7040935 GGTTAGGGTTAGGGTTTTCATGTAAAATAGGTTA
1 GGTTAGGG-T----TTTTAAT-T-AA--A--TTA
* *
7040969 GGGTTAAGGTTTTTAACTAAATTA
1 -GGTTAGGGTTTTTAATTAAATTA
7040993 GGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
7041016 GGTTAGGGTTAGGGATTTTAATTAAAATAGGTTA
1 GGTTAGGG-T-----TTTTAATT--AA-A--TTA
*
7041050 GGGTTAGGGTTTTTAACTAAATTA
1 -GGTTAGGGTTTTTAATTAAATTA
7041074 GGTTAGGGTTTTTAATTAAATTAAAATA
1 GGTTAGGGTTTTTAATTAAA-T----TA
*
7041102 GGGTAAGGGTTTTTAATTAAATTAAATTA
1 -GGTTAGGG-T-TT--TT-AATTAAATTA
7041131 GGTTAGGGTTTTTAATTAAATTAGGTCA
1 GGTTAGGGTTTTTAATTAAA-T---T-A
*
7041159 GAGTTAGGGATTTTAATTAAAATAGGTTA
1 G-GTTAGGGTTTTTAATT--AA-A--TTA
* *
7041188 TGGTTAGGG-TTTTCATGTAAAATA
1 -GGTTAGGGTTTTTAAT-TAAATTA
*
7041212 GGTTAGGGTTAGGTTTTTAACTAAATTA
1 GGTTA--G---GGTTTTTAATTAAATTA
**
7041240 GGTTAGAATTTTTAATTAAATTAAAATA
1 GGTTAGGGTTTTTAATTAAA-T----TA
* *
7041268 GGGTAAGGGCTTTTAATTAAATTAAAATA
1 -GGTTAGGG-TTTT---T-AATTAAATTA
*
7041297 GGGTAAGGGTTTTTAATTAAATTAAATTA
1 -GGTTAGGG-T-TT--TT-AATTAAATTA
7041326 GGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
7041349 GGTTAGGGTTTTTACTTAAATTAAATTA
1 GGTTAGGG--TTT--TT-AATTAAATTA
7041377 GGTTAGGGTTTTTAATTAAATTAAATTA
1 GGTTAGGG--TTT--TT-AATTAAATTA
*
7041405 GGTTAGGGTTTTTAATTAAGTTA
1 GGTTAGGGTTTTTAATTAAATTA
* *
7041428 AGTTAGGGTTTTTAATTAAAATA
1 GGTTAGGGTTTTTAATTAAATTA
*
7041451 GGTTAGGGTTAGGGTTTTCATGTAAAATAGGTTA
1 GGTTAGGG-T----TTTTAAT-T-AA--A--TTA
*
7041485 GGGTTAGGGTTTTTAACTAAATTA
1 -GGTTAGGGTTTTTAATTAAATTA
7041509 GGTTAGGGTTTTTAATTAAATTAAATTA
1 GGTTAGGG--TTT--TT-AATTAAATTA
7041537 GGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
7041560 GGTTAGGGTTTTTAATTAAATTAAATTA
1 GGTTAGGG--TTT--TT-AATTAAATTA
*
7041588 GGTTAGGGTTTTTAATTAAGTTA
1 GGTTAGGGTTTTTAATTAAATTA
*
7041611 AGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
7041634 GGTTAGGGTAAGGGTTTTTAATTAAATTAAGTTA
1 GG-T----T-AGGGTTTTTAATT--A--AA-TTA
* *
7041668 GGTTAGAGTTTTTAATTAAGTTA
1 GGTTAGGGTTTTTAATTAAATTA
*
7041691 AGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
7041714 GGTTAGGGTT
1 GGTTAGGGTT
7041724 AGGGTTTTTA
Statistics
Matches: 679, Mismatches: 56, Indels: 212
0.72 0.06 0.22
Matches are distributed among these distances:
23 243 0.36
24 29 0.04
25 10 0.01
26 19 0.03
27 13 0.02
28 149 0.22
29 121 0.18
30 23 0.03
31 7 0.01
32 5 0.01
33 8 0.01
34 29 0.04
35 23 0.03
ACGTcount: A:0.33, C:0.01, G:0.23, T:0.43
Consensus pattern (23 bp):
GGTTAGGGTTTTTAATTAAATTA
Found at i:7040888 original size:52 final size:51
Alignment explanation
Indices: 7040780--7041734 Score: 322
Period size: 51 Copynumber: 17.7 Consensus size: 51
7040770 CATGGTAAGA
* * * *
7040780 GTTTTCAATTAAATTAGGTTAGAGTTAGAGATTTTAATTAAGATAGGTTAGGGTTAGG
1 GTTTT-AATTAAAATAGGTTAGGGTTAGGGATTTTAACT-A-A-A--TTA-GGTTAGG
* *
7040838 GTTTTCATGTAAAATAGGTTAGGGTTAGGGTTTTTAACTAAATTAGGTTAGG
1 GTTTTAAT-TAAAATAGGTTAGGGTTAGGGATTTTAACTAAATTAGGTTAGG
* * * *
7040890 GTTTTTAATTAAATTAGGATAGGGTTAGAGATTTTAATTAAAATAGGTTAGGGTTAGG
1 G-TTTTAATTAAAATAGGTTAGGGTTAGGGATTTTAACT--AA-A--TTA-GGTTAGG
* * *
7040948 GTTTTCATGTAAAATAGGTTAGGGTTAAGGTTTTTAACTAAATTAGGTTAGG
1 GTTTTAAT-TAAAATAGGTTAGGGTTAGGGATTTTAACTAAATTAGGTTAGG
* *
7041000 GTTTTTAATTAAATTAGGTTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGTTAGG
1 G-TTTTAATTAAAATAGGTTAGGGTTAGGGATTTTAACT--AA-A--TTA-GGTTAGG
* * *** * * * * *
7041058 GTTTTTAACTAAATTAGGTTAGGGTT-TTTAATTAAATTAAAATAGGGTAAGG
1 G-TTTTAATTAAAATAGGTTAGGGTTAGGGATTTTAACTAAATTA-GGTTAGG
* ** * *
7041110 GTTTTTAATTAAATTAAATTA-GGTTAGGGTTTTTAATTAAATTAGGTCAGAGTTAGG
1 G-TTTTAATTAAAATAGGTTAGGGTTAGGGATTTTAACTAAA-T---T-AG-GTTAGG
* **
7041167 GATTTTAATTAAAATAGGTTATGGTTAGGG-TTTTCATGTAAAATAGGTTAGGGTTAGG
1 G-TTTTAATTAAAATAGGTTAGGGTTAGGGATTTT-AACT--AA-A--TTA-GGTTAGG
* * * ** *** * * * * *
7041225 TTTTTAACTAAATTAGGTTAGAATT-TTTAATTAAATTAAAATAGGGTAAGG
1 GTTTTAATTAAAATAGGTTAGGGTTAGGGATTTTAACTAAATTA-GGTTAGG
* *** * * *
7041276 GCTTTTAATTAAATTAAAATAGGGTAAGGGTTTTTAATTAAATTAAATTAGGTTAGG
1 G-TTTTAATTAAAATAGGTTAGGGTTAGGG--ATT--TT-AACTAAATTAGGTTAGG
* *** * * *
7041333 GTTTTTAATTAAATTAGGTTAGGGTT-TTTACTTAAATTAAATTAGGTTAGG
1 G-TTTTAATTAAAATAGGTTAGGGTTAGGGATTTTAACTAAATTAGGTTAGG
* ** * * * *
7041384 GTTTTTAATTAAATTAAATTA-GGTTAGGGTTTTTAATTAAGTTAAGTTAGG
1 G-TTTTAATTAAAATAGGTTAGGGTTAGGGATTTTAACTAAATTAGGTTAGG
**
7041435 GTTTTTAATTAAAATAGGTTAGGGTTAGGG-TTTTCATGTAAAATAGGTTAGGGTTAGG
1 G-TTTTAATTAAAATAGGTTAGGGTTAGGGATTTT-AACT--AA-A--TTA-GGTTAGG
* * *** * * *
7041493 GTTTTTAACTAAATTAGGTTAGGGTT-TTTAATTAAATTAAATTAGGTTAGG
1 G-TTTTAATTAAAATAGGTTAGGGTTAGGGATTTTAACTAAATTAGGTTAGG
* *** * * *
7041544 GTTTTTAATTAAATTAGGTTAGGGTT-TTTAATTAAATTAAATTAGGTTAGG
1 G-TTTTAATTAAAATAGGTTAGGGTTAGGGATTTTAACTAAATTAGGTTAGG
* * *
7041595 GTTTTTAATT---A-A-GTTA-AGTTAGGGTTTTTAATTAAATTAGGTTAGGGTAAGG
1 G-TTTTAATTAAAATAGGTTAGGGTTAGGGATTTTAACTAAATTAGG-T----T-AGG
* * * * * * *
7041647 GTTTTTAATTAAATTAAGTTA-GGTTAGAGTTTTTAATTAAGTTAAGTTAGG
1 G-TTTTAATTAAAATAGGTTAGGGTTAGGGATTTTAACTAAATTAGGTTAGG
* *
7041698 GTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAA
1 G-TTTTAATTAAAATAGGTTAGGGTTAGGGATTTTAA
7041735 TCAAATAATG
Statistics
Matches: 702, Mismatches: 134, Indels: 128
0.73 0.14 0.13
Matches are distributed among these distances:
45 3 0.00
46 18 0.03
47 2 0.00
50 4 0.01
51 179 0.25
52 162 0.23
53 19 0.03
54 11 0.02
55 9 0.01
56 9 0.01
57 128 0.18
58 152 0.22
59 2 0.00
60 2 0.00
61 1 0.00
62 1 0.00
ACGTcount: A:0.33, C:0.01, G:0.23, T:0.43
Consensus pattern (51 bp):
GTTTTAATTAAAATAGGTTAGGGTTAGGGATTTTAACTAAATTAGGTTAGG
Found at i:7043001 original size:25 final size:21
Alignment explanation
Indices: 7042957--7042998 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
7042947 GTATGGAAAT
7042957 ATCTATTTGCAATAATACTTA
1 ATCTATTTGCAATAATACTTA
7042978 ATCTATTTGCAATAATACTTA
1 ATCTATTTGCAATAATACTTA
7042999 CTTCTGCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.14, G:0.05, T:0.43
Consensus pattern (21 bp):
ATCTATTTGCAATAATACTTA
Found at i:7043925 original size:14 final size:15
Alignment explanation
Indices: 7043908--7043941 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
7043898 AATAAATATC
7043908 TAAAAATA-CATAAA
1 TAAAAATATCATAAA
*
7043922 TAAAAATATCTTAAA
1 TAAAAATATCATAAA
7043937 TAAAA
1 TAAAA
7043942 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAATATCATAAA
Found at i:7044169 original size:22 final size:22
Alignment explanation
Indices: 7044139--7044180 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7044129 ATTTGGAGAT
*
7044139 TTTTTGAAGGAAATTGAGAGGA
1 TTTTGGAAGGAAATTGAGAGGA
*
7044161 TTTTGGAAGGAATTTGAGAG
1 TTTTGGAAGGAAATTGAGAG
7044181 TTTGAGAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (22 bp):
TTTTGGAAGGAAATTGAGAGGA
Found at i:7044188 original size:30 final size:30
Alignment explanation
Indices: 7044152--7044210 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
7044142 TTGAAGGAAA
*
7044152 TTGAGAGGATTTTGGAAGGAATTTGAGAGT
1 TTGAGAGAATTTTGGAAGGAATTTGAGAGT
7044182 TTGAGAGAATTTTGGAAGGAATTTGAGAG
1 TTGAGAGAATTTTGGAAGGAATTTGAGAG
7044211 AATTTTTGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.36, T:0.32
Consensus pattern (30 bp):
TTGAGAGAATTTTGGAAGGAATTTGAGAGT
Found at i:7044201 original size:52 final size:51
Alignment explanation
Indices: 7044130--7044232 Score: 136
Period size: 52 Copynumber: 2.0 Consensus size: 51
7044120 TTAATATGGA
* * *
7044130 TTTGGAGATTTTTTGAAGGAAATTGAGAGGATTTTGGAA-GGAATTTGAGAG
1 TTTGGAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAATGGAA-TTGAGAG
* *
7044181 TTTGAGAGAATTTTGGAAGGAATTTGAGAGAATTTTTGAATGGAATTGAGAG
1 TTTG-GAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAATGGAATTGAGAG
7044233 AATTTTTGAA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
51 4 0.09
52 37 0.82
53 4 0.09
ACGTcount: A:0.33, C:0.00, G:0.32, T:0.35
Consensus pattern (51 bp):
TTTGGAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAATGGAATTGAGAG
Found at i:7044206 original size:22 final size:22
Alignment explanation
Indices: 7044181--7044251 Score: 108
Period size: 22 Copynumber: 3.2 Consensus size: 22
7044171 AATTTGAGAG
*
7044181 TTTGAGAGAATTTTGGAAGGAA
1 TTTGAGAGAATTTTTGAAGGAA
7044203 TTTGAGAGAATTTTTGAATGGAA
1 TTTGAGAGAATTTTTGAA-GGAA
7044226 -TTGAGAGAATTTTTGAAGGAA
1 TTTGAGAGAATTTTTGAAGGAA
*
7044247 ATTGA
1 TTTGA
7044252 TATTGAATTT
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
21 4 0.09
22 38 0.83
23 4 0.09
ACGTcount: A:0.37, C:0.00, G:0.28, T:0.35
Consensus pattern (22 bp):
TTTGAGAGAATTTTTGAAGGAA
Found at i:7044749 original size:22 final size:22
Alignment explanation
Indices: 7044720--7044765 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
7044710 TAATAGTGTT
7044720 AATAATTAAA-TTTAAAAAATA
1 AATAATTAAATTTTAAAAAATA
*
7044741 AATAGATTAAATTTTTAAAAATA
1 AATA-ATTAAATTTTAAAAAATA
7044764 AA
1 AA
7044766 AGTAAGAGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 4 0.18
22 6 0.27
23 12 0.55
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (22 bp):
AATAATTAAATTTTAAAAAATA
Found at i:7049572 original size:30 final size:27
Alignment explanation
Indices: 7049504--7049564 Score: 113
Period size: 27 Copynumber: 2.2 Consensus size: 27
7049494 TTCTCTTCTC
7049504 TCTCCTTATTTCTTCTATATTTCTTTT
1 TCTCCTTATTTCTTCTATATTTCTTTT
7049531 TCTCCTTATTTCTTCTATATTTCTTTT
1 TCTCCTTATTTCTTCTATATTTCTTTT
7049558 TCATCCT
1 TC-TCCT
7049565 CTTATTTCCA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 29 0.88
28 4 0.12
ACGTcount: A:0.11, C:0.25, G:0.00, T:0.64
Consensus pattern (27 bp):
TCTCCTTATTTCTTCTATATTTCTTTT
Found at i:7060426 original size:17 final size:17
Alignment explanation
Indices: 7060388--7060429 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
7060378 GCGCATATTT
*
7060388 TATATATAATATATATG
1 TATATATAATATATATA
* *
7060405 CATATTTAATATATATA
1 TATATATAATATATATA
7060422 TATATATA
1 TATATATA
7060430 TTAAGCCTTT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (17 bp):
TATATATAATATATATA
Found at i:7061423 original size:40 final size:38
Alignment explanation
Indices: 7061349--7061468 Score: 91
Period size: 40 Copynumber: 2.9 Consensus size: 38
7061339 AAACTGTTCA
* *
7061349 TCCACGTCAGCAAATCGCGTCCT-CGTAGGAGCGATTTGTG
1 TCCACGTAAGCAAATCGCG--CTACGT-GGAGCGATTTCTG
7061389 TCCACGTAAGCAAATCGCGCTGACGTGGATGCGATGTTCTG
1 TCCACGTAAGCAAATCGCGCT-ACGTGGA-GCGAT-TTCTG
* **
7061430 -ACACGTACCCTAACATCGCGCTAACGTGGACGCGATTTC
1 TCCACGTAAGC-AA-ATCGCGCT-ACGTGGA-GCGATTTC
7061469 GCGAAAAATG
Statistics
Matches: 67, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
38 2 0.03
39 3 0.04
40 33 0.49
41 9 0.13
42 20 0.30
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (38 bp):
TCCACGTAAGCAAATCGCGCTACGTGGAGCGATTTCTG
Found at i:7066520 original size:14 final size:14
Alignment explanation
Indices: 7066503--7066550 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
7066493 TGAAATGAAA
7066503 AAAATGAAAAAGTG
1 AAAATGAAAAAGTG
*
7066517 AAAACGAAAAA-TG
1 AAAATGAAAAAGTG
7066530 AAAAATGGAAAAAGT-
1 -AAAAT-GAAAAAGTG
7066545 AAAATG
1 AAAATG
7066551 GAGAGGCTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
13 3 0.10
14 19 0.66
15 6 0.21
16 1 0.03
ACGTcount: A:0.67, C:0.02, G:0.19, T:0.12
Consensus pattern (14 bp):
AAAATGAAAAAGTG
Found at i:7066540 original size:21 final size:21
Alignment explanation
Indices: 7066502--7066550 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
7066492 ATGAAATGAA
*
7066502 AAAAATGAAAAAGTGAAAACG
1 AAAAATGAAAAAGTGAAAAAG
7066523 AAAAATGAAAAA-TGGAAAAAG
1 AAAAATGAAAAAGT-GAAAAAG
*
7066544 TAAAATG
1 AAAAATG
7066551 GAGAGGCTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 1 0.04
21 24 0.96
ACGTcount: A:0.67, C:0.02, G:0.18, T:0.12
Consensus pattern (21 bp):
AAAAATGAAAAAGTGAAAAAG
Found at i:7067864 original size:44 final size:44
Alignment explanation
Indices: 7067807--7068928 Score: 1022
Period size: 44 Copynumber: 25.4 Consensus size: 44
7067797 GCTAAAGAGC
* * *
7067807 AGCAGATCTTGTCTTCATGTATTGGCTTGAAGTAGATCAAAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGAT
*** * ***
7067851 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCATGTA-TTGACATGAAGTAGATCGAAGAT
*** * *
7067896 AATGGATCTTGTCTTCATGTATTGACAAGGAGTAGATC-AGAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGAT
*
7067940 AGCAAATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGAT
* * *
7067984 AGCAGATCCTATCTTCATGTATTGACATGAAGTAGATCGAAGGT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGAT
***
7068028 AATGGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGAT
*** * *** *
7068072 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGGT
1 AGCAGATCTTGTCTTCATGTA-TTGACATGAAGTAGATCGAAGAT
*** *
7068117 AATGGATCTTGTCTTCATGTATTGACATGGAGTAGATC-AGAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGAT
*
7068161 AGTAGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGAT
* * * * *
7068205 ATCAAATCTTATCTTCCTGTATTAACATGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGAT
*** * * * * *
7068249 AATGGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCGGAGAA
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGAT
* * * * *
7068293 AGCAGATCTTATCTTCATGTACTGGCGTGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGAT
* * *
7068337 AGCAGATCTTGTATTCATGTATTGATATGAATTAGATCGAAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGAT
* *** * ***
7068381 AGCGGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCATGTA-TTGACATGAAGTAGATCGAAGAT
*
7068426 -G-ATGGATCTTGTCTTCATGTATTGACATAAAGTAGATCGAAGAT
1 AGCA--GATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGAT
* *** * ***
7068470 AGCGGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCATGTA-TTGACATGAAGTAGATCGAAGAT
*** *
7068515 AATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAAAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGAT
***
7068559 AATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGAT
* *** * ***
7068603 AGCGGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCATGTA-TTGACATGAAGTAGATCGAAGAT
*** *
7068648 AATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAAAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGAT
*** * *** *
7068692 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCAAAGAT
1 AGCAGATCTTGTCTTCATGTA-TTGACATGAAGTAGATCGAAGAT
*** * *
7068737 AATGGATCTTGTCTTCATGTATTGACAAGGAGTAGATC-AGAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGAT
*
7068781 AGCAAATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGAT
* *
7068825 AGCAGATCCTATCTTCATGTATTGACATGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGAT
***
7068869 AATGGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGAT
*
7068913 AGCAGATCGTGTCTTC
1 AGCAGATCTTGTCTTC
7068929 CCATACTAGT
Statistics
Matches: 868, Mismatches: 191, Indels: 38
0.79 0.17 0.03
Matches are distributed among these distances:
43 5 0.01
44 659 0.76
45 203 0.23
46 1 0.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (44 bp):
AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGAT
Found at i:7068152 original size:89 final size:88
Alignment explanation
Indices: 7067807--7068906 Score: 950
Period size: 89 Copynumber: 12.4 Consensus size: 88
7067797 GCTAAAGAGC
* * *** ***
7067807 AGCAGATCTTGTCTTCATGTATTGG-CTTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCAT
1 AGCAGATCTTGTCTTCATGTA-TGGACATGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGT
* ***
7067871 ACTGGTGGTGAAGTAGATCGAAGAT
65 A-TTGACATGAAGTAGATCGAAGAT
*** * * * ****
7067896 AATGGATCTTGTCTTCATGTATTGACAAGGAGTAGATC-AGAGATAGCAAATCTTGTCTTCATGT
1 AGCAGATCTTGTCTTCATGTATGGACATGAAGTAGATCGA-AGATAATGGATCTTGTCTTCATGT
7067960 ATTGACATGAAGTAGATC-AGAGAT
65 ATTGACATGAAGTAGATCGA-AGAT
* * * *
7067984 AGCAGATCCTATCTTCATGTATTGACATGAAGTAGATCGAAGGTAATGGATCTTGTCTTCATGTA
1 AGCAGATCTTGTCTTCATGTATGGACATGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTA
7068049 TTGACATGAAGTAGATC-AGAGAT
66 TTGACATGAAGTAGATCGA-AGAT
*** *** *
7068072 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGGTAATGGATCTTGTCTTCATGT
1 AGCAGATCTTGTCTTCATGTA-TGGACATGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGT
*
7068137 ATTGACATGGAGTAGATC-AGAGAT
65 ATTGACATGAAGTAGATCGA-AGAT
* * ** * *
7068161 AGTAGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGAT-ATCAAATCTTATCTTCCTG
1 AGCAGATCTTGTCTTCATGTATGGACATGAAGTAGATCGA-AGATAAT-GGATCTTGTCTTCATG
*
7068224 TATTAACATGAAGTAGATCGAAGAT
64 TATTGACATGAAGTAGATCGAAGAT
*** * * *
7068249 AATGGATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCGGAGA-AA-GCAGATCTTATCTTCAT
1 AGCAGATCTTGTCTTCATGTA-TGGACATGAAGTAGATCGAAGATAATG--GATCTTGTCTTCAT
* * * *
7068311 GTACTGGCGTGAAGTAGATCGAAGAA
63 GTATTGACATGAAGTAGATCGAAGAT
* * * * ** ***
7068337 AGCAGATCTTGTATTCATGTATTGATATGAATTAGATCGAAGATAGCGGATCTTGTCTTCCCATA
1 AGCAGATCTTGTCTTCATGTATGGACATGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTA
* ***
7068402 CTGGTGGTGAAGTAGATCGAAGAT
66 -TTGACATGAAGTAGATCGAAGAT
* * ** ***
7068426 -G-ATGGATCTTGTCTTCATGTATTGACATAAAGTAGATCGAAGATAGCGGATCTTGTCTTCCCA
1 AGCA--GATCTTGTCTTCATGTATGGACATGAAGTAGATCGAAGATAATGGATCTTGTCTTCATG
* ***
7068489 TACTGGTGGTGAAGTAGATCGAAGAT
64 TA-TTGACATGAAGTAGATCGAAGAT
*** * *
7068515 AATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTA
1 AGCAGATCTTGTCTTCATGTATGGACATGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTA
7068580 TTGACATGAAGTAGATCGAAGAT
66 TTGACATGAAGTAGATCGAAGAT
* *** ***
7068603 AGCGGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGT
1 AGCAGATCTTGTCTTCATGTA-TGGACATGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGT
*
7068668 ATTGACATGAAGTAGATCAAAGAT
65 ATTGACATGAAGTAGATCGAAGAT
*** *** *
7068692 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCAAAGATAATGGATCTTGTCTTCATGT
1 AGCAGATCTTGTCTTCATGTA-TGGACATGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGT
* *
7068757 ATTGACAAGGAGTAGATC-AGAGAT
65 ATTGACATGAAGTAGATCGA-AGAT
* * *** * *
7068781 AGCAAATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAGCAGATCCTATCTTCATGT
1 AGCAGATCTTGTCTTCATGTATGGACATGAAGTAGATCGA-AGATAATGGATCTTGTCTTCATGT
7068845 ATTGACATGAAGTAGATCGAAGAT
65 ATTGACATGAAGTAGATCGAAGAT
*** *
7068869 AATGGATCTTGTCTTCATGTATTGACATGAAGTAGATC
1 AGCAGATCTTGTCTTCATGTATGGACATGAAGTAGATC
7068907 AGAGATAGCA
Statistics
Matches: 851, Mismatches: 135, Indels: 51
0.82 0.13 0.05
Matches are distributed among these distances:
87 8 0.01
88 394 0.46
89 448 0.53
90 1 0.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.32
Consensus pattern (88 bp):
AGCAGATCTTGTCTTCATGTATGGACATGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTA
TTGACATGAAGTAGATCGAAGAT
Found at i:7068184 original size:133 final size:133
Alignment explanation
Indices: 7067879--7068889 Score: 952
Period size: 133 Copynumber: 7.6 Consensus size: 133
7067869 ATACTGGTGG
* * * *
7067879 TGAAGTAGATC-GAAGATAATGGATCTTGTCTTCATGTATTGACAAGGAGTAGATC-AGAGATAG
1 TGAAGTAGATCAG-AGATAGTAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAG
* * * *** *** * *
7067942 CAAATCTTGTCTTCATGTA-TTGACATGAAGTAGATC-AGAGATAGCAGATCCTATCTTCATGTA
64 CAGATCTTGTCTTCCTGTACTGGTGGTGAAGTAGATCGA-AGATAATGGATCTTGTCTTCATGTA
7068005 TTGACA
128 TTGACA
* * *
7068011 TGAAGTAGATC-GAAGGTAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAG
1 TGAAGTAGATCAG-AGATAGTAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAG
** *
7068074 CAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGGTAATGGATCTTGTCTTCATGTAT
64 CAGATCTTGTCTTCCTGTACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTAT
7068139 TGACA
129 TGACA
* *
7068144 TGGAGTAGATCAGAGATAGTAGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATATC
1 TGAAGTAGATCAGAGATAGTAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAGC
* * ***** *
7068208 AAATCTTATCTTCCTGTA-TTAACATGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTACT
65 AGATCTTGTCTTCCTGTACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATT
* *
7068272 GGCG
130 GACA
* * * * * * * *
7068276 TGAAGTAGATCGGAGAAAGCAGATCTTATCTTCATGTACTGGCGTGAAGTAGATCGAAGAAAGCA
1 TGAAGTAGATCAGAGATAGTAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCA
* * * * * * ** *** *
7068341 GATCTTGTATTCATGTATTGAT-ATGAATTAGATCGAAGATAGCGGATCTTGTCTTCCCATACTG
66 GATCTTGTCTTCCTGTACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTA-TT
***
7068405 GTGG
130 GACA
* *
7068409 TGAAGTAGATC-GAAGAT-GATGGATCTTGTCTTCATGTATTGACATAAAGTAGATCGAAGATAG
1 TGAAGTAGATCAG-AGATAG-TAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAG
* **
7068472 CGGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTAT
64 CAGATCTTGTCTTCCTGTACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTAT
7068537 TGACA
129 TGACA
* * * *
7068542 TGAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCG
1 TGAAGTAGATCAGAGATAGTAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCA
**
7068607 GATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTG
66 GATCTTGTCTTCCTGTACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTG
7068672 ACA
131 ACA
* * *** * *** * **
7068675 TGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCAAAGATAAT
1 TGAAGTAGATCAGAGATAGTAGATCTTGTCTTCATGTA-TTGACATGAAGTAGATCGAAGATAGC
* * * *** ****
7068740 GGATCTTGTCTTCATGTATTGACAAG-G-AGTAGATC-AGAGATAGCAAATCTTGTCTTCATGTA
65 AGATCTTGTCTTCCTGTACTG-GTGGTGAAGTAGATCGA-AGATAATGGATCTTGTCTTCATGTA
7068802 TTGACA
128 TTGACA
* * * ***
7068808 TGAAGTAGATCAGAGATAGCAGATCCTATCTTCATGTATTGACATGAAGTAGATCGAAGATAATG
1 TGAAGTAGATCAGAGATAGTAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCA
*
7068873 GATCTTGTCTTCATGTA
66 GATCTTGTCTTCCTGTA
7068890 TTGACATGAA
Statistics
Matches: 739, Mismatches: 126, Indels: 28
0.83 0.14 0.03
Matches are distributed among these distances:
132 257 0.35
133 410 0.55
134 71 0.10
135 1 0.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.32
Consensus pattern (133 bp):
TGAAGTAGATCAGAGATAGTAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCA
GATCTTGTCTTCCTGTACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTG
ACA
Found at i:7068569 original size:222 final size:221
Alignment explanation
Indices: 7067879--7068957 Score: 1124
Period size: 221 Copynumber: 4.9 Consensus size: 221
7067869 ATACTGGTGG
* * *
7067879 TGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACAAGGAGTAGATCAGAGATAGCA
1 TGAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCA
* ** * *** * *
7067944 AATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAGCAGATCCTATCTTCATGTATTG
66 GATCTTGTCTTCACATATGGACATGAAGTAGATCGA-AGATAATGGATCTTGTCTTCATGTATTG
* *** *** * ***
7068008 ACATGAAGTAGATCGAAGGTAATGGATCTTGTCTTCATGTA-TTGACATGAAGTAGATC-AGAGA
130 ACATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGA-AGA
*** *** * ***
7068071 TAGCAGATCTTGTCTTCCCATACTGGTGG
194 TAATGGATCTTGTCTTCATGTA-TTGACA
* * * *
7068100 TGAAGTAGATCGAAGGTAATGGATCTTGTCTTCATGTATTGACATGGAGTAGATCAGAGATAGTA
1 TGAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCA
** * ** * *
7068165 GATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGAT-ATCAAATCTTATCTTCCTGTATT
66 GATCTTGTCTTCACATATGGACATGAAGTAGATCGA-AGATAAT-GGATCTTGTCTTCATGTATT
* *** *** * *
7068228 AACATGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCGGAGA
129 GACATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGA
* * * *
7068292 -AA-GCAGATCTTATCTTCATGTACTGGCG
194 TAATG--GATCTTGTCTTCATGTATTGACA
* * * *
7068320 TGAAGTAGATCGAAGA-AA-GCAGATCTTGTATTCATGTATTGATATGAATTAGATC-GAAGATA
1 TGAAGTAGATCAAAGATAATG--GATCTTGTCTTCATGTATTGACATGAAGTAGATCAG-AGATA
* * *** *
7068382 GCGGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATGATGGATCTTGTCTTCATGTA
63 GCAGATCTTGTCTTCACATA-TGGACATGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTA
* *
7068447 TTGACATAAAGTAGATCGAAGATAGCGGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAA
127 TTGACATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAA
7068512 GATAATGGATCTTGTCTTCATGTATTGACA
192 GATAATGGATCTTGTCTTCATGTATTGACA
7068542 TGAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATC-GAAGATAGC
1 TGAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAG-AGATAGC
* * ***
7068606 GGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATT
65 AGATCTTGTCTTCACATA-TGGACATGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATT
* *
7068671 GACATGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCAAAGA
129 GACATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGA
7068736 TAATGGATCTTGTCTTCATGTATTGACA
194 TAATGGATCTTGTCTTCATGTATTGACA
* * * ****
7068764 AGGAGTAGATCAGAGATAGCAAATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCA
1 TGAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCA
* * ** *
7068829 GATCCTATCTTCATGTATTGACATGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGA
66 GATCTTGTCTTCACATATGGACATGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGA
* *
7068894 CATGAAGTAGATC-AGAGATAGCAGATCGTGTCTTCCCATACTAGT-GTGAAGTAGATCGAAGAT
131 CATGAAGTAGATCGA-AGATAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAT
7068957 A
195 A
7068958 CAAGTCTTAC
Statistics
Matches: 756, Mismatches: 84, Indels: 37
0.86 0.10 0.04
Matches are distributed among these distances:
218 1 0.00
219 3 0.00
220 87 0.12
221 343 0.45
222 315 0.42
223 5 0.01
224 2 0.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (221 bp):
TGAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCA
GATCTTGTCTTCACATATGGACATGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGA
CATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATA
ATGGATCTTGTCTTCATGTATTGACA
Found at i:7068993 original size:132 final size:130
Alignment explanation
Indices: 7067811--7068950 Score: 372
Period size: 133 Copynumber: 8.6 Consensus size: 130
7067801 AAGAGCAGCA
* ** * * * *
7067811 GATCTTGTCTTCATGTATTGGCTTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGG
1 GATCTTGTCTTCATGTATTGACAAGAAGTAGATCAGAGATAGCAAATCGTGTCTT--CAT-CTAG
* *** * * * * * *
7067876 TGGTGAAGTAGATC-GAAGATAATGGATCTTGTCTTCATGTATTGACAAGGAGTAGATC-AGAGA
63 TGATGAAGTAGATCAG-AGATAGCAGATCCTATCCTCATGCATTGACATGAAGTAGATCGA-AGA
***
7067939 TAGCA
126 TAATG
* * * * * * *
7067944 AATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCCTATCTTCATGTATTGA
1 GATCTTGTCTTCATGTATTGACAAGAAGTAGATCAGAGATAGCAAATCGTGTCTTCATCTAGTG-
* *** * * * *
7068009 CATGAAGTAGATC-GAAGGTAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGAT
65 -ATGAAGTAGATCAG-AGATAGCAGATCCTATCCTCATGCATTGACATGAAGTAGATCGA-AGAT
***
7068072 AGCA
127 AATG
*** * **** * **** * * *
7068076 GATCTTGTCTTCCCATACTGGTGGTGAAGTAGATC-GAAGGTAATGGATCTTGTCTTCATGTATT
1 GATCTTGTCTTCATGTA-TTGACAAGAAGTAGATCAG-AGATAGCAAATCGTGTCTTCATCTAGT
* * * * * *
7068140 GACATGGAGTAGATCAGAGATAGTAGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGA
64 G--ATGAAGTAGATCAGAGATAGCAGATCCTATCCTCATGCATTGACATGAAGTAGATCGA-AGA
*
7068204 T-ATCA
126 TAAT-G
* * * * * **** * * *
7068209 AATCTTATCTTCCTGTATTAACATGAAGTAGATC-GAAGATAATGGATCTTGTCTTCATGTACTG
1 GATCTTGTCTTCATGTATTGACAAGAAGTAGATCAG-AGATAGCAAATCGTGTCTTCATCTAGT-
* * * * * * * * *
7068273 GCGTGAAGTAGATCGGAGAAAGCAGATCTTATCTTCATGTACTGGCGTGAAGTAGATCGAAGA-A
64 G-ATGAAGTAGATCAGAGATAGCAGATCCTATCCTCATGCATTGACATGAAGTAGATCGAAGATA
7068337 A-G
128 ATG
* * * * ** *
7068339 CAGATCTTGTATTCATGTATTGATATGAATTAGATC-GAAGATAGCGGATCTTGTCTTCCCATAC
1 --GATCTTGTCTTCATGTATTGACAAGAAGTAGATCAG-AGATAGCAAATCGTGTCTT--CAT-C
* * * * * * *
7068403 TGGTGGTGAAGTAGATC-GAAGAT-G-ATGGATCTTGTCTTCATGTATTGACATAAAGTAGATCG
60 TAGTGATGAAGTAGATCAG-AGATAGCA--GATCCTATCCTCATGCATTGACATGAAGTAGATCG
**
7068465 AAGATAGCG
122 AAGATAATG
*** * **** **** * * *
7068474 GATCTTGTCTTCCCATACTGGTGGTGAAGTAGATC-GAAGATAATGGATCTTGTCTTCATGTATT
1 GATCTTGTCTTCATGTA-TTGACAAGAAGTAGATCAG-AGATAGCAAATCGTGTCTTCATCTAGT
* *** * * * *
7068538 GACATGAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGAT
64 G--ATGAAGTAGATCAGAGATAGCAGATCCTATCCTCATGCATTGACATGAAGTAGATCGAAGAT
**
7068603 AGCG
127 AATG
*** * **** **** * * *
7068607 GATCTTGTCTTCCCATACTGGTGGTGAAGTAGATC-GAAGATAATGGATCTTGTCTTCATGTATT
1 GATCTTGTCTTCATGTA-TTGACAAGAAGTAGATCAG-AGATAGCAAATCGTGTCTTCATCTAGT
* * * * * * *** *
7068671 GACATGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATAC-TGGTGGTGAAGTAGATCAAAG
64 G--ATGAAGTAGATCAGAGATAGCAGATCCTATC--CTCATGCATTGACATGAAGTAGATCGAAG
7068735 ATAATG
125 ATAATG
* * * *
7068741 GATCTTGTCTTCATGTATTGACAAGGAGTAGATCAGAGATAGCAAATCTTGTCTTCATGTATTGA
1 GATCTTGTCTTCATGTATTGACAAGAAGTAGATCAGAGATAGCAAATCGTGTCTTCATCTAGTG-
* *
7068806 CATGAAGTAGATCAGAGATAGCAGATCCTATCTTCATGTATTGACATGAAGTAGATCGAAGATAA
65 -ATGAAGTAGATCAGAGATAGCAGATCCTATCCTCATGCATTGACATGAAGTAGATCGAAGATAA
7068871 TG
129 TG
* *
7068873 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCGTGTCTTCCCATACTAG
1 GATCTTGTCTTCATGTATTGACAAGAAGTAGATCAGAGATAGCAAATCGTGTCTT--CAT-CTAG
7068938 TG-TGAAGTAGATC
63 TGATGAAGTAGATC
7068951 GAAGATACAA
Statistics
Matches: 838, Mismatches: 137, Indels: 65
0.81 0.13 0.06
Matches are distributed among these distances:
130 3 0.00
131 10 0.01
132 302 0.36
133 438 0.52
134 75 0.09
135 10 0.01
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (130 bp):
GATCTTGTCTTCATGTATTGACAAGAAGTAGATCAGAGATAGCAAATCGTGTCTTCATCTAGTGA
TGAAGTAGATCAGAGATAGCAGATCCTATCCTCATGCATTGACATGAAGTAGATCGAAGATAATG
Found at i:7070220 original size:24 final size:23
Alignment explanation
Indices: 7070184--7070228 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
7070174 ATATACATGC
*
7070184 GCATATTTTATATATAATATATAT
1 GCATATTTAATATAT-ATATATAT
7070208 GCATATTTAATATATATATAT
1 GCATATTTAATATATATATAT
7070229 TTTAAGCCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.49
Consensus pattern (23 bp):
GCATATTTAATATATATATATAT
Found at i:7070228 original size:15 final size:15
Alignment explanation
Indices: 7070192--7070230 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
7070182 GCGCATATTT
*
7070192 TATATATAATATATA
1 TATATTTAATATATA
7070207 TGCATATTTAATATATA
1 T--ATATTTAATATATA
7070224 TATATTT
1 TATATTT
7070231 TAAGCCTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 7 0.33
17 14 0.67
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (15 bp):
TATATTTAATATATA
Found at i:7071550 original size:19 final size:19
Alignment explanation
Indices: 7071526--7071618 Score: 150
Period size: 19 Copynumber: 4.9 Consensus size: 19
7071516 TAATCTTCAG
7071526 TGATATGCAATCTTAGATA
1 TGATATGCAATCTTAGATA
7071545 TGATATGCAATCTTAGATA
1 TGATATGCAATCTTAGATA
* ** *
7071564 TAATATATAATATTAGATA
1 TGATATGCAATCTTAGATA
7071583 TGATATGCAATCTTAGATA
1 TGATATGCAATCTTAGATA
7071602 TGATATGCAATCTTAGA
1 TGATATGCAATCTTAGA
7071619 AGATAAGATT
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 66 1.00
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.38
Consensus pattern (19 bp):
TGATATGCAATCTTAGATA
Found at i:7073377 original size:9 final size:9
Alignment explanation
Indices: 7073363--7073408 Score: 65
Period size: 9 Copynumber: 5.1 Consensus size: 9
7073353 TATAGTTTAA
7073363 TATTCGAAT
1 TATTCGAAT
7073372 TATTCGAAT
1 TATTCGAAT
7073381 TATTCGAAT
1 TATTCGAAT
* *
7073390 CATTCGAGT
1 TATTCGAAT
*
7073399 TATTCAAAT
1 TATTCGAAT
7073408 T
1 T
7073409 TGAAAACTCA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43
Consensus pattern (9 bp):
TATTCGAAT
Found at i:7073651 original size:25 final size:25
Alignment explanation
Indices: 7073623--7073680 Score: 68
Period size: 23 Copynumber: 2.4 Consensus size: 25
7073613 TTTTAACTAA
* *
7073623 TTTTTATATATATG-AACATATTTAT
1 TTTTTATATAAATGCAA-ATATATAT
7073648 TTTTTA-A-AAATGCAAATATATAT
1 TTTTTATATAAATGCAAATATATAT
7073671 TTTTTATATA
1 TTTTTATATA
7073681 CTTTATAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
23 17 0.61
24 4 0.14
25 7 0.25
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.53
Consensus pattern (25 bp):
TTTTTATATAAATGCAAATATATAT
Found at i:7081458 original size:77 final size:77
Alignment explanation
Indices: 7081372--7081557 Score: 363
Period size: 77 Copynumber: 2.4 Consensus size: 77
7081362 CATCGAGGAG
*
7081372 ATAGAAACTGGTGCTTCAACCCACTCCACTGCCCTTCTTCATGTAGTCTCGTTCTAATCCACTAC
1 ATAGAAACTGGTGCTTCAACCCACTCCACTGCCCCTCTTCATGTAGTCTCGTTCTAATCCACTAC
7081437 ATCTTTAGGGGT
66 ATCTTTAGGGGT
7081449 ATAGAAACTGGTGCTTCAACCCACTCCACTGCCCCTCTTCATGTAGTCTCGTTCTAATCCACTAC
1 ATAGAAACTGGTGCTTCAACCCACTCCACTGCCCCTCTTCATGTAGTCTCGTTCTAATCCACTAC
7081514 ATCTTTAGGGGT
66 ATCTTTAGGGGT
7081526 ATAGAAACTGGTGCTTCAACCCACTCCACTGC
1 ATAGAAACTGGTGCTTCAACCCACTCCACTGC
7081558 GACATCGGGG
Statistics
Matches: 108, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
77 108 1.00
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.30
Consensus pattern (77 bp):
ATAGAAACTGGTGCTTCAACCCACTCCACTGCCCCTCTTCATGTAGTCTCGTTCTAATCCACTAC
ATCTTTAGGGGT
Found at i:7084071 original size:43 final size:42
Alignment explanation
Indices: 7083930--7084829 Score: 370
Period size: 43 Copynumber: 21.1 Consensus size: 42
7083920 CTTTAGCCCA
* *
7083930 CACATCCCAGGCACCAAGGTGCCGATGGGTGCCCGAGGCTCCCG
1 CACAT-CCAAGCACCAAGGTACCGAT-GGTGCCCGAGGCTCCCG
* * * *
7083974 CACATCCAAGCACCAAGTTGCCTATGGTGTCCGAGGCTCCCG
1 CACATCCAAGCACCAAGGTACCGATGGTGCCCGAGGCTCCCG
* * * * *
7084016 CACCTCCTAGCCACCGAGGTACCGATGCTACCCGAGGCTCCCG
1 CACATCCAAG-CACCAAGGTACCGATGGTGCCCGAGGCTCCCG
*
7084059 CACATCCGAGCCACCAAGGTACCGATGGTGCCCGAGGCTCCCG
1 CACATCCAAG-CACCAAGGTACCGATGGTGCCCGAGGCTCCCG
* * ** *
7084102 CACATCCCAGCACCTAGGGGCCGATGGTGGCCGAGGCTCCCG
1 CACATCCAAGCACCAAGGTACCGATGGTGCCCGAGGCTCCCG
** *** *
7084144 CACGA-CCAAGGGCCTATTTTGCCGATGGTGCCCGAGGCTCCCG
1 CAC-ATCCAAGCACC-AAGGTACCGATGGTGCCCGAGGCTCCCG
** ** * * * *
7084187 CACGA-CCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCG
1 CAC-ATCCAAGCACCAAG-GTACCGATGGTGCCCGAGGCTCCCG
** * * * *
7084230 CACGA-CCAAGGGCCTAGGTTGCCGATGGTTCTCGAGGCTCCCG
1 CAC-ATCCAAGCACCAAGG-TACCGATGGTGCCCGAGGCTCCCG
** * ** *
7084273 CACGA-CCAAGGGCCTAGGTTACCGACAGTGTCCGAGGCTCCCG
1 CAC-ATCCAAGCACCAAGG-TACCGATGGTGCCCGAGGCTCCCG
* * * *
7084316 CACAT-TATAGCACCGAGCTGCCGATGGTGCCCGAGGCTCCCG
1 CACATCCA-AGCACCAAGGTACCGATGGTGCCCGAGGCTCCCG
* * * * * *
7084358 CACGA-CCAAAG-GCCTAGTTTGCGGATGGTGTCCGAGGCTCCCG
1 CAC-ATCC-AAGCACCAAG-GTACCGATGGTGCCCGAGGCTCCCG
* * * * ** * *
7084401 TACATCCCAGAACCTAGGGGCCGATGGTGGCCGAGGCTCCCA
1 CACATCCAAGCACCAAGGTACCGATGGTGCCCGAGGCTCCCG
** *** *
7084443 CACGA-CCAAGGGCCTATTTTGCCGATGGTGCCCGAGGCTCCCG
1 CAC-ATCCAAGCACC-AAGGTACCGATGGTGCCCGAGGCTCCCG
** ** * * * *
7084486 CACGA-CCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCG
1 CAC-ATCCAAGCACCAAG-GTACCGATGGTGCCCGAGGCTCCCG
** * * * * *
7084529 CACGA-CCAAGGGCCTAGGTTGCCGATGGTGCGCGAGGTTCTCG
1 CAC-ATCCAAGCACCAAGG-TACCGATGGTGCCCGAGGCTCCCG
* * * *
7084572 CACATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCC
1 CACATCCAAGCACCAAGGTACCGATGGTGCCCGAGGCTCCCG
** * * ** **
7084614 CACGA-CCAAGGGCCTAGGTTGCCGACAGTGTTCGAGGCTCCCG
1 CAC-ATCCAAGCACCAAGG-TACCGATGGTGCCCGAGGCTCCCG
* * * *
7084657 CACAT-CATAGCACCGAGCTGCCGATGATGCCCGAGGCTCCCG
1 CACATCCA-AGCACCAAGGTACCGATGGTGCCCGAGGCTCCCG
* ** * * *
7084699 CACGA-CTAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTG
1 CAC-ATCCAAGCACCAAGG-TACCGATGGTGCCCGAGGCTCCCG
* ** ** * * ** * *
7084742 CATGA-CCAAGGGCTTAGTTTGCCGATGGTGAACGGGGCTCCTG
1 CA-CATCCAAGCACCAAG-GTACCGATGGTGCCCGAGGCTCCCG
* ** *
7084785 CACATCCTAGCACCAAGGTGTCGATGGTGCCCGAGACTCCCG
1 CACATCCAAGCACCAAGGTACCGATGGTGCCCGAGGCTCCCG
7084827 CAC
1 CAC
7084830 GACTAAGGGC
Statistics
Matches: 681, Mismatches: 147, Indels: 58
0.77 0.17 0.07
Matches are distributed among these distances:
42 207 0.30
43 468 0.69
44 6 0.01
ACGTcount: A:0.19, C:0.35, G:0.30, T:0.17
Consensus pattern (42 bp):
CACATCCAAGCACCAAGGTACCGATGGTGCCCGAGGCTCCCG
Found at i:7084449 original size:256 final size:255
Alignment explanation
Indices: 7084164--7084771 Score: 806
Period size: 256 Copynumber: 2.4 Consensus size: 255
7084154 GGCCTATTTT
* *
7084164 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTC
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTC-C
* * * * *
7084229 GCACGACCAAGGGCCTAGGTTGCCGATGGTTCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
65 GCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCCCGCACGACCAAGGGCCTAGGTTA
* * *
7084294 CCGACAGTGTC-CGAGGCTCCCGCACAT-TATAGCACCGAGCTGCCGATGGTGCCCGAGGCTCCC
130 CCGACAGTG-CGCGAGGCTCCCGCACATCCA-AGCACCAAGCTGCCGATGCTGCCCGAGGCTCCC
* * * ** * * * *
7084357 GCACGACCAAAGGCCTAGTTTGCGGATGGTGTCCGAGGCTCCCGTACATCCCAGAACCTAGGG
193 CCACGACCAAAGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACATCACAGAACCGAGCG
* * *
7084420 GCCGATGGTGGCCGAGGCTCCCACACGACCAAGGGCCTATTTTGCCGATGGTGCCCGAGGCTCCC
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCT-CC
* *
7084485 GCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTG
65 GCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCCCGCACGACCAAGGGCCTAGGTTA
** * * * *
7084550 CCGATGGTGCGCGAGGTTCTCGCACATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCCC
130 CCGACAGTGCGCGAGGCTCCCGCACATCCAAGCACCAAGCTGCCGATGCTGCCCGAGGCTCCCCC
* * * * *
7084615 ACGACCAAGGGCCTAGGTTGCCGACAGTGTTCGAGGCTCCCGCACATCATAGCACCGAGCT
195 ACGACCAAAGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACATCACAGAACCGAGCG
* * *
7084676 GCCGATGATGCCCGAGGCTCCCGCACGACTAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCC-
*
7084741 GCATGACCAAGGGCTTAGTTTGCCGATGGTG
65 GCACGACCAAGGGCTTAGTTTGCCGATGGTG
7084772 AACGGGGCTC
Statistics
Matches: 306, Mismatches: 42, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
255 3 0.01
256 301 0.98
257 2 0.01
ACGTcount: A:0.18, C:0.33, G:0.31, T:0.18
Consensus pattern (255 bp):
GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCG
CACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCCCGCACGACCAAGGGCCTAGGTTAC
CGACAGTGCGCGAGGCTCCCGCACATCCAAGCACCAAGCTGCCGATGCTGCCCGAGGCTCCCCCA
CGACCAAAGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACATCACAGAACCGAGCG
Found at i:7084652 original size:299 final size:299
Alignment explanation
Indices: 7084082--7084771 Score: 874
Period size: 299 Copynumber: 2.3 Consensus size: 299
7084072 CCAAGGTACC
* *
7084082 GATGGTGCCCGAGGCTCCCGCACATCCCAGCACCTAGGGGCCGATGGTGGCCGAGGCTCCCGCAC
1 GATGGTGCCCGAGGCTCCCGCACATCCCAGAACCTAGGGGCCGATGGTGGCCGAGGCTCCCACAC
7084147 GACCAAGGGCCTATTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGA
66 GACCAAGGGCCTATTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGA
* *
7084212 TGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTTCTCGAGGCTCCCGCACG
131 TGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCGCGAGGCTCCCGCACG
** * * ** **
7084277 ACCAAGGGCCTAGGTTACCGACAGTGTCCGAGGCTCCCGCACATTATAGCACCGAGCTGCCGATG
196 ACCAAGCACCAAGGTTACCGACAGTGTCCGAGGCTCCCCCACACCATAGCACCGAGCTGCCGACA
7084342 GTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGTTTGCG
261 GTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGTTTGCG
* *
7084381 GATGGTGTCCGAGGCTCCCGTACATCCCAGAACCTAGGGGCCGATGGTGGCCGAGGCTCCCACAC
1 GATGGTGCCCGAGGCTCCCGCACATCCCAGAACCTAGGGGCCGATGGTGGCCGAGGCTCCCACAC
7084446 GACCAAGGGCCTATTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGA
66 GACCAAGGGCCTATTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGA
* *
7084511 TGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCGCGAGGTTCTCGCAC-
131 TGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCGCGAGGCTCCCGCACG
* * ** * *
7084575 ATCCAAGCACCAAGG-TGCCGA-TGCTG-CTCGAGGCTCCCCCACGACCA-AGGGCCTAGGTTGC
196 A-CCAAGCACCAAGGTTACCGACAG-TGTC-CGAGGCTCCCCCAC-ACCATAGCACCGA-GCTGC
** * * * * * *
7084636 CGACAGTGTTCGAGGCTCCCGCAC-ATCATAGCACCGAG-CTGCC
256 CGACAGTGCCCGAGGCTCCCGCACGACCAAAG-GCCTAGTTTGCG
* ** ** * * **
7084679 GATGATGCCCGAGGCTCCCGCACGA-CTAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTGC
1 GATGGTGCCCGAGGCTCCCGCAC-ATCCCAGAACCTAGG-GGCCGATGGTGGCCGAGGCTCCCAC
* * *
7084743 ATGACCAAGGGCTTAGTTTGCCGATGGTG
64 ACGACCAAGGGCCTATTTTGCCGATGGTG
7084772 AACGGGGCTC
Statistics
Matches: 339, Mismatches: 44, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
297 2 0.01
298 63 0.19
299 274 0.81
ACGTcount: A:0.18, C:0.33, G:0.31, T:0.17
Consensus pattern (299 bp):
GATGGTGCCCGAGGCTCCCGCACATCCCAGAACCTAGGGGCCGATGGTGGCCGAGGCTCCCACAC
GACCAAGGGCCTATTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGA
TGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCGCGAGGCTCCCGCACG
ACCAAGCACCAAGGTTACCGACAGTGTCCGAGGCTCCCCCACACCATAGCACCGAGCTGCCGACA
GTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGTTTGCG
Found at i:7084749 original size:128 final size:127
Alignment explanation
Indices: 7083949--7084842 Score: 730
Period size: 128 Copynumber: 7.0 Consensus size: 127
7083939 GGCACCAAGG
** * *
7083949 TGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAG-TTGCCTATGGTGTCCGAGGCT
1 TGCCGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCT
* * * * * * * ** *
7084012 CCCGCACCTCCTAGCCACCGAGGTACCGATGCTACCCGAGGCTCCCGCAC-ATCCGAGCCACCAA
64 CCCGCACAT-CAAG-CACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GGCCTA
7084076 GG-
125 GGT
* * ** ** *
7084078 TACCGATGGTGCCCGAGGCTCCCGCAC-ATCCCAGCACCTAG-GGGCCGATGGTGGCCGAGGCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTC
* ** ** * *
7084141 CCGCACGACCAAGGGCCTATTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTT
65 CCGCAC-ATCAAGCACCTA-GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
7084206 TGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGT-TCTCGAGGCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTC-CGAGGCTC
* ** * ** * ** ** *
7084270 CCGCACGACCAAGGGCCTAGGTTACCGACAGTGTCCGAGGCTCCCGCAC-ATTATAGCACCGA-G
65 CCGCAC-ATCAAGCACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGGCCTAGG
*
7084333 C
127 T
* *
7084334 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGTTTGCGGATGGTGTCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCC
* * * * * * **
7084399 CGTACATCCCAGAACCTAGGGGCCGATGGTGGCCGAGGCTCCCACACGACCAAGGGCCTATTT
66 CGCACAT-CAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
7084462 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCC
* ** * * * ** *
7084527 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCGCGAGGTTCTCGCAC-ATCCAAGCACCAAGG-
66 CGCAC-ATCAAGCACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * * * ** *
7084590 TGCCGATGCTGCTCGAGGCTCCCCCACGACCAAGGGCCTAGGTTGCCGACAGTGTTCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCC
* * * *
7084655 CGCACATCATAGCACCGAGCTGCCGATGATGCCCGAGGCTCCCGCACGACTAAGGGCCTAGGT
66 CGCACATCA-AGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * ** *
7084718 TGCCGATGGTGCCCGAGGCTCCTGCATGACCAAGGGCTTAGTTTGCCGATGGTGAACGGGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCC
* * * * * *
7084783 TGCACATCCTAGCACCAAGGTGTCGATGGTGCCCGAGACTCCCGCACGACTAAGGGCCTA
66 CGCACAT-CAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
7084843 TGCTACCGGG
Statistics
Matches: 610, Mismatches: 135, Indels: 41
0.78 0.17 0.05
Matches are distributed among these distances:
127 68 0.11
128 438 0.72
129 104 0.17
ACGTcount: A:0.19, C:0.34, G:0.30, T:0.17
Consensus pattern (127 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCC
CGCACATCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
Found at i:7084876 original size:24 final size:24
Alignment explanation
Indices: 7084849--7084925 Score: 102
Period size: 24 Copynumber: 3.2 Consensus size: 24
7084839 CCTATGCTAC
*
7084849 CGGGACGGATCGCCGGAACACCGA
1 CGGGACGGATCGCCGGAGCACCGA
*
7084873 CGGGACGGTTCGCCGGAGCACC-A
1 CGGGACGGATCGCCGGAGCACCGA
* *
7084896 CCGGGACGGATCACCGGAGCACCGC
1 -CGGGACGGATCGCCGGAGCACCGA
7084921 CGGGA
1 CGGGA
7084926 ACCTAACCGG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
23 1 0.02
24 45 0.98
ACGTcount: A:0.21, C:0.35, G:0.39, T:0.05
Consensus pattern (24 bp):
CGGGACGGATCGCCGGAGCACCGA
Found at i:7085183 original size:42 final size:42
Alignment explanation
Indices: 7085134--7085411 Score: 260
Period size: 42 Copynumber: 6.6 Consensus size: 42
7085124 ACTTTAGCTT
* * *
7085134 TGGTGCTCAAGGCTCCCGCTCATCCATGCACCAAGGTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
** *
7085176 TGGTGCTCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
* * *
7085219 TAGTG-TCCGAGGCTCCCGCACAT-CATAGTACCGAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGA
* ** * * *
7085261 TGGT-CTCCGAGGCTCCC-CACAACCAAGGGCCTAGTTTGCTGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCAAG-GTGCCGA
* *
7085303 TGGTGTTCGATGCTCCCGCACATCCAAGCACCAAGGTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* *
7085345 TGGTGCTCGAGGCTCCCGCACATCCAAGCATCAAGGTTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGA
* * *
7085388 TGGTGTTTGAGGCTCCCACACATC
1 TGGTGCTCGAGGCTCCCGCACATC
7085412 TGAGCCACCA
Statistics
Matches: 193, Mismatches: 32, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
41 10 0.05
42 111 0.58
43 72 0.37
ACGTcount: A:0.20, C:0.33, G:0.28, T:0.20
Consensus pattern (42 bp):
TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
Found at i:7085323 original size:84 final size:86
Alignment explanation
Indices: 7085143--7085372 Score: 326
Period size: 84 Copynumber: 2.7 Consensus size: 86
7085133 TTGGTGCTCA
* *
7085143 AGGCTCCCGCTCATCCAT-GCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGC
1 AGGCTCCCGCACATCCATAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACAACCAAGGGC
7085207 CTAGGTTGCCGATAGTGTCCG
66 CTAGGTTGCCGATAGTGTCCG
* *
7085228 AGGCTCCCGCACAT-CATAGTACCGAGGTGCCGATGGT-CTCCGAGGCTCCC-CACAACCAAGGG
1 AGGCTCCCGCACATCCATAGCACCAAGGTGCCGATGGTGCT-CGAGGCTCCCGCACAACCAAGGG
* * * *
7085290 CCTAGTTTGCTGATGGTGTTCG
65 CCTAGGTTGCCGATAGTGTCCG
* *
7085312 ATGCTCCCGCACATCCA-AGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACATCCAAG
1 AGGCTCCCGCACATCCATAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACAACCAAG
7085373 CATCAAGGTT
Statistics
Matches: 128, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
84 75 0.59
85 53 0.41
ACGTcount: A:0.20, C:0.34, G:0.28, T:0.18
Consensus pattern (86 bp):
AGGCTCCCGCACATCCATAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACAACCAAGGGC
CTAGGTTGCCGATAGTGTCCG
Found at i:7085410 original size:85 final size:84
Alignment explanation
Indices: 7085134--7085411 Score: 328
Period size: 85 Copynumber: 3.3 Consensus size: 84
7085124 ACTTTAGCTT
* * * *
7085134 TGGTGCTCAAGGCTCCCGCTCATCCATGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGA
1 TGGTGTTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCAC-A
7085199 CCAAGGGCCTAGGTTGCCGA
65 CCAAGGGCCTAGGTTGCCGA
* * * *
7085219 TAGTGTCCGAGGCTCCCGCACAT-CATAGTACCGAGGTGCCGATGGT-CTCCGAGGCTCCC-CAC
1 TGGTGTTCGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGATGGTGCT-CGAGGCTCCCGCAC
* *
7085281 AACCAAGGGCCTAGTTTGCTGA
64 -ACCAAGGGCCTAGGTTGCCGA
*
7085303 TGGTGTTCGATGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACAT
1 TGGTGTTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACA-
*** * *
7085368 CCAAGCATCAAGGTTACCGA
65 CCAAGGGCCTAGGTTGCCGA
* *
7085388 TGGTGTTTGAGGCTCCCACACATC
1 TGGTGTTCGAGGCTCCCGCACATC
7085412 TGAGCCACCA
Statistics
Matches: 161, Mismatches: 26, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
84 75 0.47
85 86 0.53
ACGTcount: A:0.20, C:0.33, G:0.28, T:0.20
Consensus pattern (84 bp):
TGGTGTTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACAC
CAAGGGCCTAGGTTGCCGA
Found at i:7096357 original size:85 final size:84
Alignment explanation
Indices: 7095951--7096795 Score: 637
Period size: 85 Copynumber: 9.9 Consensus size: 84
7095941 CACCCCCCAG
* * * * * * *
7095951 TGGTGTCCGAGGCTCCCGCACCTCCTAGCCACCGAGGTACCGATGCTGCCCGAGGCTCCCGCAC-
1 TGGTGCCCGAGGCTCCCGCACAT-CAAG-CACTGAGTTGCCGATGGTGCCCGAGGCTCCCGCACG
* ** *
7096015 ATCCGAGCCACCAAGG-TGCCGA
64 A-CCAAG-GGCCTAGGTTGCCGA
* * * ** * * *
7096037 TGGTACCCGAGGCTCCAAG-ACGACCAAGGGCCGAGGTGCCGATGGTGTCCGAGGCTCCCGCAC-
1 TGGTGCCCGAGGCTCC-CGCAC-ATCAAGCACTGAGTTGCCGATGGTGCCCGAGGCTCCCGCACG
* ** *
7096100 ATCCCAGCACCTAGG-GGCCGA
64 A-CCAAGGGCCTAGGTTGCCGA
* * * * ** * * *
7096121 TGGTGGCTGAGGCTACCGCACGACCAAGGGCCGATTTTGCCGATGGTGCCCGAGGCTCCCGCATG
1 TGGTGCCCGAGGCTCCCGCAC-ATCAAGCACTGA-GTTGCCGATGGTGCCCGAGGCTCCCGCACG
* * *
7096186 ACCAAGGGCTTAGTTTGCTGA
64 ACCAAGGGCCTAGGTTGCCGA
* ** * * *
7096207 TGGTGCCCGAGCCTCTTGCACGACCAAGGGC-CT-AGGTTACCGATGGTGCTCGAGGCTCCCGCA
1 TGGTGCCCGAGGCTCCCGCAC-ATCAA--GCACTGA-GTTGCCGATGGTGCCCGAGGCTCCCGCA
7096270 CGACCAAGGGCCTAGGTTGCCGA
62 CGACCAAGGGCCTAGGTTGCCGA
** * * * *
7096293 CAGTGTCCGAGGCTCTCGCACATCATAGCACTGAGCTGCCGATGGTGCCCGAGGCTCCCTCACGA
1 TGGTGCCCGAGGCTCCCGCACATCA-AGCACTGAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA
*
7096358 CCAAGGGCCTAGTTTGCCGA
65 CCAAGGGCCTAGGTTGCCGA
* * * * *
7096378 TGGTGTCCGAGGCTCCCGTACATCCCAGCACCTAGAG--GCCGATTGTGGCCGAGGCTCCCGCAC
1 TGGTGCCCGAGGCTCCCGCACAT-CAAGCA-CT-GAGTTGCCGATGGTGCCCGAGGCTCCCGCAC
**
7096441 GACCAAGGGCCTATTTTGCCGA
63 GACCAAGGGCCTAGGTTGCCGA
** * * *
7096463 TGGTGCCCGAGGCTCCCGCACAATCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACG
1 TGGTGCCCGAGGCTCCCGCAC-ATCAAGCACTGAG-TTGCCGATGGTGCCCGAGGCTCCCGCACG
7096528 ACCAAGGGCCTAGGTTGCCGA
64 ACCAAGGGCCTAGGTTGCCGA
* * * * ** * * *
7096549 TAGTGCGCGAGGTTCTCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGTACGA
1 TGGTGCCCGAGGCTCCCGCACAT-CAAGCACTGAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA
** *
7096614 TTAAGGGCCTAAGTTGCCGA
65 CCAAGGGCCTAGGTTGCCGA
** * * * *
7096634 CAGTGTCCGAGGCTCCCGCACATCATAGCACCGAGCTGTCGATGGTGCCCGAGGCTCCCGCACGA
1 TGGTGCCCGAGGCTCCCGCACATCA-AGCACTGAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA
*
7096699 CCAAGGGCCTAGGTTACCGA
65 CCAAGGGCCTAGGTTGCCGA
* * * ** * * *
7096719 TGGTGCCCGAGGCTCCTGCATGACCAAGGGCTTAGTTTGCCGATGGTGTCCGGGGCTCCCGCACG
1 TGGTGCCCGAGGCTCCCGCA-CATCAAGCACTGAG-TTGCCGATGGTGCCCGAGGCTCCCGCACG
7096784 ACCAAGGGCCTA
64 ACCAAGGGCCTA
7096796 TGCTACCGGG
Statistics
Matches: 615, Mismatches: 122, Indels: 44
0.79 0.16 0.06
Matches are distributed among these distances:
83 3 0.00
84 45 0.07
85 342 0.56
86 219 0.36
87 5 0.01
88 1 0.00
ACGTcount: A:0.18, C:0.33, G:0.31, T:0.18
Consensus pattern (84 bp):
TGGTGCCCGAGGCTCCCGCACATCAAGCACTGAGTTGCCGATGGTGCCCGAGGCTCCCGCACGAC
CAAGGGCCTAGGTTGCCGA
Found at i:7096447 original size:256 final size:256
Alignment explanation
Indices: 7096159--7096795 Score: 852
Period size: 256 Copynumber: 2.5 Consensus size: 256
7096149 GGCCGATTTT
* * * * *
7096159 GCCGATGGTGCCCGAGGCTCCCGCATGACCAAGGGCTTAGTTTGCTGATGGTGCCCGAGCCTCTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCT
* * *
7096224 GCACGACCAAGGGCCTAGGTTACCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
66 GCACGACCAAGGGCTTAGTTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
**
7096289 CCGACAGTGTC-CGAGGCTCTCGCACAT-CATAGCACTGAGCTGCCGATGGTGCCCGAGGCTCCC
131 CCGACAGTG-CGCGAGGCTCTCGCACATCCA-AGCACCAAGCTGCCGATGGTGCCCGAGGCTCCC
** * * *
7096352 -TCACGACCAAGGGCCT-AGTTTGCCGATGGTGTCCGAGGCTCCCGTACATCCCAGCACCTAGAG
194 GT-ACGACCAAGGGCCTAAG-TTGCCGACAGTGTCCGAGGCTCCCGCACATCACAGCACCGAGAG
* * * *
7096415 GCCGATTGTGGCCGAGGCTCCCGCACGACCAAGGGCCTATTTTGCCGATGGTGCCCGAGGCTCCC
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCT
* * * * *
7096480 GCACAATCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTG
66 GCACGACCAAGGGCTTAGTTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
* * * *
7096545 CCGATAGTGCGCGAGGTTCTCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGT
131 CCGACAGTGCGCGAGGCTCTCGCACATCCAAGCACCAAGCTGCCGATGGTGCCCGAGGCTCCCGT
** * **
7096610 ACGATTAAGGGCCTAAGTTGCCGACAGTGTCCGAGGCTCCCGCACATCATAGCACCGAGCT
196 ACGACCAAGGGCCTAAGTTGCCGACAGTGTCCGAGGCTCCCGCACATCACAGCACCGAGAG
* * *
7096671 GTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCT
* *
7096736 GCATGACCAAGGGCTTAGTTTGCCGATGGTG-TCCGGGGCTCCCGCACGACCAAGGGCCTA
66 GCACGACCAAGGGCTTAGTTTGCCGATGGTGCT-CGAGGCTCCCGCACGACCAAGGGCCTA
7096796 TGCTACCGGG
Statistics
Matches: 329, Mismatches: 47, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
255 1 0.00
256 323 0.98
257 5 0.02
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.19
Consensus pattern (256 bp):
GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCT
GCACGACCAAGGGCTTAGTTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
CCGACAGTGCGCGAGGCTCTCGCACATCCAAGCACCAAGCTGCCGATGGTGCCCGAGGCTCCCGT
ACGACCAAGGGCCTAAGTTGCCGACAGTGTCCGAGGCTCCCGCACATCACAGCACCGAGAG
Found at i:7096646 original size:299 final size:297
Alignment explanation
Indices: 7096000--7096792 Score: 900
Period size: 299 Copynumber: 2.6 Consensus size: 297
7095990 CCGATGCTGC
** * * ** * *
7096000 CCGAGGCTCCCGCACATCCGAGCCACCAAGGTGCCGATGGTACCCGAGGCTCCAAG-ACGACCAA
1 CCGAGGCTCCCGCACATCATAG-CACTAAGCTGCCGACAGTGCCCGAGGCTCC-CGCACGACCAA
* *
7096064 GGGCCGAGGTGCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCTAGGGGCCGATGGTGGCT
64 GGGCCGAGCTGCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCTA-GGGCCGATGGTGGCC
* * *
7096129 GAGGCTACCGCACGACCAAGGGCCGATTTTGCCGATGGTGCCCGAGGCTCCCGCATGACCAAGGG
128 GAGGCTCCCGCACGACCAAGGGCCTATTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
7096194 CTTAGTTTGCTGATGGTGCCCGAGCCTCTTGCACGACCAAGGGCCTAGGTTACCGATGGTGCTCG
193 CTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTACCGATAGTGCGCG
** *
7096259 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGT
258 AGGCTCCCGCACGACCAAGCACCAAGGTTGCCGACAGTGT
* * ** *
7096299 CCGAGGCTCTCGCACATCATAGCACTGAGCTGCCGATGGTGCCCGAGGCTCCCTCACGACCAAGG
1 CCGAGGCTCCCGCACATCATAGCACTAAGCTGCCGACAGTGCCCGAGGCTCCCGCACGACCAAGG
* * * *
7096364 GCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGTACATCCCAGCACCTAGAGGCCGATTGTGGCCG
66 GCCGAG-CTGCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCTAG-GGCCGATGGTGGCCG
* *
7096429 AGGCTCCCGCACGACCAAGGGCCTATTTTGCCGATGGTGCCCGAGGCTCCCGCACAATCAAGGGC
129 AGGCTCCCGCACGACCAAGGGCCTATTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
*
7096494 TTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATAGTGCGCGA
194 TTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTACCGATAGTGCGCGA
* * **
7096559 GGTTCTCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTG-
259 GGCTCCCGCACGA-CCAAGCACCAAGGTTGCCGACAGTGT
* * * * *
7096596 CTCGAGGCTCCCGTACGATTA-AGGGC-CTAAGTTGCCGACAGTGTCCGAGGCTCCCGCAC-ATC
1 C-CGAGGCTCCCGCAC-ATCATA--GCACTAAGCTGCCGACAGTGCCCGAGGCTCCCGCACGACC
** * * * ** *
7096658 ATAGCACCGAGCTGTCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTACCGATGG
62 A-AGGGCCGAGCTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCCAGCACCTAGG--GCCGATGG
* * * * * * *
7096722 TGCCCGAGGCTCCTGCATGACCAAGGGCTTAGTTTGCCGATGGTGTCCGGGGCTCCCGCACGACC
123 TGGCCGAGGCTCCCGCACGACCAAGGGCCTATTTTGCCGATGGTGCCCGAGGCTCCCGCACGACC
7096787 AAGGGC
188 AAGGGC
7096793 CTATGCTACC
Statistics
Matches: 420, Mismatches: 62, Indels: 24
0.83 0.12 0.05
Matches are distributed among these distances:
297 2 0.00
298 101 0.24
299 315 0.75
300 2 0.00
ACGTcount: A:0.19, C:0.33, G:0.31, T:0.17
Consensus pattern (297 bp):
CCGAGGCTCCCGCACATCATAGCACTAAGCTGCCGACAGTGCCCGAGGCTCCCGCACGACCAAGG
GCCGAGCTGCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCTAGGGCCGATGGTGGCCGAG
GCTCCCGCACGACCAAGGGCCTATTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTT
AGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTACCGATAGTGCGCGAGG
CTCCCGCACGACCAAGCACCAAGGTTGCCGACAGTGT
Found at i:7096744 original size:43 final size:43
Alignment explanation
Indices: 7095990--7096795 Score: 683
Period size: 43 Copynumber: 18.9 Consensus size: 43
7095980 CACCGAGGTA
* * ** *
7095990 CCGATGCTGCCCGAGGCTCCCGCAC-ATCCGAGCCACCAAGG-TG
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GGCCTAGGTTG
* * *
7096033 CCGATGGTACCCGAGGCTCCAAG-ACGACCAAGGGCCGAGG-TG
1 CCGATGGTGCCCGAGGCTCC-CGCACGACCAAGGGCCTAGGTTG
* * ** *
7096075 CCGATGGTGTCCGAGGCTCCCGCAC-ATCCCAGCACCTAGG-GG
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTG
* * * * **
7096117 CCGATGGTGGCTGAGGCTACCGCACGACCAAGGGCCGATTTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
* * *
7096160 CCGATGGTGCCCGAGGCTCCCGCATGACCAAGGGCTTAGTTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
* * ** *
7096203 CTGATGGTGCCCGAGCCTCTTGCACGACCAAGGGCCTAGGTTA
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
*
7096246 CCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
** * * * *
7096289 CCGACAGTGTCCGAGGCTCTCGCAC-ATCATA--GCACT-GAGCTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGGC-CTAG-GTTG
* *
7096331 CCGATGGTGCCCGAGGCTCCCTCACGACCAAGGGCCTAGTTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
* * * **
7096374 CCGATGGTGTCCGAGGCTCCCGTAC-ATCCCAGCACCTAGAG--G
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAG-GTTG
* * **
7096416 CCGATTGTGGCCGAGGCTCCCGCACGACCAAGGGCCTATTTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
* * * *
7096459 CCGATGGTGCCCGAGGCTCCCGCACAATCAAGGGCTTAGTTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
* *
7096502 CCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
* * * * ** *
7096545 CCGATAGTGCGCGAGGTTCTCGCAC-ATCCAAGCACCAAGG-TG
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTG
* * ** *
7096587 CCGATGGTGCTCGAGGCTCCCGTACGATTAAGGGCCTAAGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
** * * ** * *
7096630 CCGACAGTGTCCGAGGCTCCCGCAC-ATCATAGCACCGA-GCTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGGCCTAGGTTG
* *
7096672 TCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
* * * *
7096715 CCGATGGTGCCCGAGGCTCCTGCATGACCAAGGGCTTAGTTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
* *
7096758 CCGATGGTGTCCGGGGCTCCCGCACGACCAAGGGCCTA
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
7096796 TGCTACCGGG
Statistics
Matches: 602, Mismatches: 137, Indels: 48
0.76 0.17 0.06
Matches are distributed among these distances:
41 5 0.01
42 189 0.31
43 403 0.67
44 5 0.01
ACGTcount: A:0.18, C:0.33, G:0.31, T:0.17
Consensus pattern (43 bp):
CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
Found at i:7096865 original size:23 final size:24
Alignment explanation
Indices: 7096802--7096877 Score: 100
Period size: 24 Copynumber: 3.2 Consensus size: 24
7096792 CCTATGCTAC
7096802 CGGGACGGTTCGCCGGAGCACCGA
1 CGGGACGGTTCGCCGGAGCACCGA
* *
7096826 CAGGACGGTTCGCCGGAGTACCG-
1 CGGGACGGTTCGCCGGAGCACCGA
* * *
7096849 CGGGACGGATCGTCGGAGCACCGT
1 CGGGACGGTTCGCCGGAGCACCGA
7096873 CGGGA
1 CGGGA
7096878 ACCTAATCGG
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
23 19 0.42
24 26 0.58
ACGTcount: A:0.17, C:0.30, G:0.42, T:0.11
Consensus pattern (24 bp):
CGGGACGGTTCGCCGGAGCACCGA
Found at i:7102940 original size:43 final size:43
Alignment explanation
Indices: 7102870--7103517 Score: 202
Period size: 43 Copynumber: 15.2 Consensus size: 43
7102860 TCTTCTTTAG
* *
7102870 CCCGCACATCCCAGGCACCAAGGTGCCGATGGGTGCCCGAGGCT
1 CCCGCACATCCTAAGCACCAAGGTGCCGAT-GGTGCCCGAGGCT
* *
7102914 CCCGCACAT-CTAAGCACCAAGTTGCCGATGGTGTCCGAGGCT
1 CCCGCACATCCTAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
* * *
7102956 CCCGCACCTCCT-AGCCACCGAGGTGCCGATGCTGCCCGAGGCT
1 CCCGCACATCCTAAG-CACCAAGGTGCCGATGGTGCCCGAGGCT
* ** ** * * * *
7102999 CCCGCATGA-CC-AAGGGCTTAGTTTACCGATGGTGCTCGAGCCT
1 CCCGCA-CATCCTAAGCACCAAG-GTGCCGATGGTGCCCGAGGCT
* ** * *
7103042 CTCGCACGA-CC-AAGGGCCTAGGTTGCCGATGGTGCTCGAGGCT
1 CCCGCAC-ATCCTAAGCACCAAGG-TGCCGATGGTGCCCGAGGCT
* * ** *
7103085 CCCGCACGA-CC-AATG-GCCTAGGTTGCCGACAGTGTTCCGAGGCT
1 CCCGCAC-ATCCTAA-GCACCAAGG-TGCCGATGGTG-CCCGAGGCT
* * * *
7103129 CCC-CACATCATTAGCACCGAGCTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCTAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
* ** * * *
7103171 CCCGCACGA-CCAAAGGGCCTAGTTTGCCGATCGGTG-CTGAGGCT
1 CCCGCAC-ATCCTAAGCACCAAG-GTGCCGAT-GGTGCCCGAGGCT
* * *
7103215 CCCGTACATCC-AA-CACCTAGG-GCCGATGGTGGCCGAGGCT
1 CCCGCACATCCTAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
* * ***
7103255 CCAGCACGA-CC-AATGGC-CTATTTTGCCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCTAA--GCACCAAGGTGCCGATGGTGCCCGAGGCT
* * * ** * *
7103298 CTCGCA-AGACC-AATG-GCTTAGTTTGCCGAT-GTGCGCCGAGCCT
1 CCCGCACA-TCCTAA-GCACCAAG-GTGCCGATGGTGC-CCGAGGCT
* * ** * * * *
7103341 CTCGCATGA-CC-AAGGGCCTAGGTTGCCGATGGTGCGCGTGGTT
1 CCCGCA-CATCCTAAGCACCAAGG-TGCCGATGGTGCCCGAGGCT
* * * *
7103384 CTCGCACATCC-AAGTACCAAGCTGCCGATGGTGCTCGAGGCT
1 CCCGCACATCCTAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
* * * * ** *
7103426 CCCGCACGA-CCAAAG-GCCTAGGTGCAGACAGTGTCCGGGAGGCT
1 CCCGCAC-ATCCTAAGCACCAAGGTGCCGATGGTG-CC-CGAGGCT
* * * *
7103470 -CCGCACATCAT-AGCACCGAGCTACCGATGGTGCCCGAGGCT
1 CCCGCACATCCTAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
7103511 CCCGCAC
1 CCCGCAC
7103518 GACCAAGGGC
Statistics
Matches: 463, Mismatches: 100, Indels: 84
0.72 0.15 0.13
Matches are distributed among these distances:
39 4 0.01
40 22 0.05
41 8 0.02
42 100 0.22
43 266 0.57
44 58 0.13
45 5 0.01
ACGTcount: A:0.19, C:0.34, G:0.30, T:0.18
Consensus pattern (43 bp):
CCCGCACATCCTAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
Found at i:7103028 original size:86 final size:84
Alignment explanation
Indices: 7102870--7103552 Score: 525
Period size: 86 Copynumber: 8.0 Consensus size: 84
7102860 TCTTCTTTAG
* * * * ** *
7102870 CCCGCACATCCCAGGCACCAAGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCTAAGCACCAA
1 CCCGCACAT-CCAAGCACCGAGCTGCCGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTA
7102934 G-TTGCCGATGGTGTCCGAGGCT
63 GTTTGCCGATGGTG-CCGAGGCT
* * * * * *
7102956 CCCGCACCTCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCTCCCGCATGACCAAGGGCTTAGT
1 CCCGCACATCCAAG-CACCGAGCTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGT
* *
7103021 TTACCGATGGTGCTCGAGCCT
65 TTGCCGATGGTGC-CGAGGCT
* ** * * * *
7103042 CTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAATGGCCTAG
1 CCCGCAC-ATCCAAGCACCGA-GCTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * *
7103106 GTTGCCGACAGTGTTCCGAGGCT
64 TTTGCCGA-TG-GTGCCGAGGCT
7103129 CCC-CACAT-CATTAGCACCGAGCTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGGCCTA
1 CCCGCACATCCA--AGCACCGAGCTGCCGATGGTGCCCGAGGCTCCCGCACGACC-AAGGGCCTA
*
7103192 GTTTGCCGATCGGTGCTGAGGCT
63 GTTTGCCGAT-GGTGCCGAGGCT
* * * * * * *
7103215 CCCGTACATCCAA-CACCTAG-GGCCGATGGTGGCCGAGGCTCCAGCACGACCAATGGCCTATTT
1 CCCGCACATCCAAGCACCGAGCTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTT
7103278 TGCCGATGGTGCCCGAGGCT
66 TGCCGATGGTG-CCGAGGCT
* * * ** * * * *
7103298 CTCGCA-AGACCAATG-GCTTAGTTTGCCGAT-GTGCGCCGAGCCTCTCGCATGACCAAGGGCCT
1 CCCGCACA-TCCAA-GCACCGAG-CTGCCGATGGTGC-CCGAGGCTCCCGCACGACCAAGGGCCT
* * *
7103360 AGGTTGCCGATGGTGCGCGTGGTT
62 AGTTTGCCGATGGTGC-CGAGGCT
* * * * * *
7103384 CTCGCACATCCAAGTACCAAGCTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAAGGCCTAG-G
1 CCCGCACATCCAAGCACCGAGCTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTT
* **
7103448 TGCAGACAGTGTCCGGGAGGCT
66 TGCCGATGGTG-CC--GAGGCT
* *
7103470 -CCGCACAT-CATAGCACCGAGCTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT-GG
1 CCCGCACATCCA-AGCACCGAGCTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGT
7103532 TTG-CGATGGTGCCCGA-GCT
65 TTGCCGATGGTG-CCGAGGCT
7103551 CC
1 CC
7103553 TGCGTGACCA
Statistics
Matches: 473, Mismatches: 92, Indels: 68
0.75 0.15 0.11
Matches are distributed among these distances:
81 3 0.01
82 8 0.02
83 32 0.07
84 51 0.11
85 131 0.28
86 207 0.44
87 36 0.08
88 5 0.01
ACGTcount: A:0.18, C:0.34, G:0.30, T:0.18
Consensus pattern (84 bp):
CCCGCACATCCAAGCACCGAGCTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTT
TGCCGATGGTGCCGAGGCT
Found at i:7103361 original size:256 final size:254
Alignment explanation
Indices: 7102874--7103611 Score: 747
Period size: 256 Copynumber: 2.9 Consensus size: 254
7102864 CTTTAGCCCG
* * * * ** *
7102874 CACATCCCAGGCACCAAGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCTAAGCACCAAGTTG
1 CACAT-CCAAGCACCAAGCTGCCGAT-GGTGCCCGAGGCTCCCGCACGACCAAAGGGCCTAGTTG
* * *
7102938 CCGAT-GGTGTCCGAGGCTCCCGCACCTCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCTCCC
64 CCGATCGGTG-CCGAGGCTCCCGCACATCC-AGACACCGAGG-GCCGATGGTGCCCGAGGCTCCC
* * * * * * * *
7103002 GCATGACCAAGGGCTTAGTTTACCGATGGTGCTCGAGCCTCTCGCACGACCAAGGGCCTAGGTTG
126 GCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCTCGCAAGACCAA-GGCTTAGTTTG
* * *
7103067 CCGATGGTGC-TCGAGGCTCCCGCACGACCAATGGCCTAGGTTGCCGACAGTGTTC-CGAGGCTC
190 CCGATGGTGCGCCGAGGCT-CCGCACGACCAAGGGCCTAGGTTGCCGA-AG-GTGCGCGAGGCTC
7103130 -CC
252 TCC
*
7103132 CACAT-CATTAGCACCGAGCTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGGCCTAGTTT
1 CACATCCA--AGCACCAAGCTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGGCCTAG-TT
* * * * *
7103196 GCCGATCGGTGCTGAGGCTCCCGTACATCCA-ACACCTAGGGCCGATGGTGGCCGAGGCTCCAGC
63 GCCGATCGGTGCCGAGGCTCCCGCACATCCAGACACCGAGGGCCGATGGTGCCCGAGGCTCCCGC
* *
7103260 ACGACCAATGGCCTATTTTGCCGATGGTGCCCGAGGCTCTCGCAAGACCAATGGCTTAGTTTGCC
128 ACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCTCGCAAGACCAA-GGCTTAGTTTGCC
* * * * * *
7103325 GAT-GTGCGCCGAGCCTCTCGCATGACCAAGGGCCTAGGTTGCCGATGGTGCGCGTGGTTCTCG
192 GATGGTGCGCCGAGGCTC-CGCACGACCAAGGGCCTAGGTTGCCGAAGGTGCGCGAGGCTCTCC
* * * *
7103388 CACATCCAAGTACCAAGCTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAA-GGCCTAGGTGCA
1 CACATCCAAGCACCAAGCTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGGCCTAGTTGCC
* * **
7103452 GA-CAGTGTCCGGGAGGCT-CCGCACAT-CATAGCACCGAGCTACCGATGGTGCCCGAGGCTCCC
66 GATCGGTG-CC--GAGGCTCCCGCACATCCAGA-CACCGAG-GGCCGATGGTGCCCGAGGCTCCC
* **
7103514 GCACGACCAAGGGCCT-GGTTG-CGATGGTGCCCGA-GCTC-CTGCGTGACCAAGGCTTAGTTTG
126 GCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCTC-GCAAGACCAAGGCTTAGTTTG
7103575 CCGATGGTG-GCC-AGGGCTCCGCACGACCAAGGGCCTA
190 CCGATGGTGCGCCGA-GGCTCCGCACGACCAAGGGCCTA
7103612 TGCTACCGGA
Statistics
Matches: 405, Mismatches: 56, Indels: 45
0.80 0.11 0.09
Matches are distributed among these distances:
251 18 0.04
252 28 0.07
253 23 0.06
254 31 0.08
255 68 0.17
256 151 0.37
257 29 0.07
258 29 0.07
259 24 0.06
260 4 0.01
ACGTcount: A:0.19, C:0.33, G:0.30, T:0.18
Consensus pattern (254 bp):
CACATCCAAGCACCAAGCTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGGCCTAGTTGCC
GATCGGTGCCGAGGCTCCCGCACATCCAGACACCGAGGGCCGATGGTGCCCGAGGCTCCCGCACG
ACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCTCGCAAGACCAAGGCTTAGTTTGCCGATG
GTGCGCCGAGGCTCCGCACGACCAAGGGCCTAGGTTGCCGAAGGTGCGCGAGGCTCTCC
Found at i:7113898 original size:11 final size:11
Alignment explanation
Indices: 7113879--7113916 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
7113869 TAATAACATG
7113879 AAAAAATTATT
1 AAAAAATTATT
*
7113890 AAAATATTATT
1 AAAAAATTATT
*
7113901 AAATAATT-TT
1 AAAAAATTATT
7113911 AAAAAA
1 AAAAAA
7113917 AAACCATGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
10 7 0.30
11 16 0.70
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (11 bp):
AAAAAATTATT
Found at i:7117605 original size:14 final size:15
Alignment explanation
Indices: 7117567--7117608 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 15
7117557 TATAAATGGG
7117567 AATAAAAA-AAGAAT
1 AATAAAAACAAGAAT
7117581 AATAAATAAACAA-AAT
1 AAT-AA-AAACAAGAAT
7117597 AATAAAAACAAG
1 AATAAAAACAAG
7117609 TCAGGGACCA
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
14 9 0.38
15 4 0.17
16 9 0.38
17 2 0.08
ACGTcount: A:0.76, C:0.05, G:0.05, T:0.14
Consensus pattern (15 bp):
AATAAAAACAAGAAT
Found at i:7119284 original size:40 final size:40
Alignment explanation
Indices: 7119213--7119445 Score: 333
Period size: 40 Copynumber: 5.8 Consensus size: 40
7119203 GCTTCTTTTG
** *
7119213 TCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGCGA
1 TCTGCTCCACTACTGCTT-AGGGAGATAAGACTTGATGCGA
7119254 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
*
7119294 TCTGCTCCACTACTGCTTAGAGAGATAAGACTTGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
* * *
7119334 TTTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTG-
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-TGATGC-GA
*
7119376 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGAGGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
* *
7119416 TCTGCTTCATTACTGCTTAGGGAGATAAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA
7119446 TCGGTTTCTT
Statistics
Matches: 174, Mismatches: 14, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 119 0.68
41 20 0.11
42 33 0.19
43 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.28
Consensus pattern (40 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
Found at i:7119387 original size:122 final size:121
Alignment explanation
Indices: 7119215--7119445 Score: 349
Period size: 122 Copynumber: 1.9 Consensus size: 121
7119205 TTCTTTTGTC
7119215 TGCTCCACTACAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCCACTACTGCTTAGGGAGAT
1 TGCTCCACTACAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCCACTACTGCTTAGGGAGAT
*
7119280 AAGACTTGATGCGATCTGCTCCACTACTGCTTAGAGAGATAAGACTTGATGCGATT
66 AAGACTTGAGGCGATCTGCTCCACTACTGCTTAGAGAGATAAGACTTGATGCGATT
** * *
7119336 TGCTCCACTACTGCTT-AGGGAGATAAGATCTGTGGTTCTG-TCTGCTCCACTACTGCTTAGGGA
1 TGCTCCACTACAACTTCAGGGAGATAAGA-CTG-GATGC-GATCTGCTCCACTACTGCTTAGGGA
* * *
7119399 GATAAGACTTGAGGCGATCTGCTTCATTACTGCTTAGGGAGATAAGA
63 GATAAGACTTGAGGCGATCTGCTCCACTACTGCTTAGAGAGATAAGA
7119446 TCGGTTTCTT
Statistics
Matches: 99, Mismatches: 8, Indels: 5
0.88 0.07 0.04
Matches are distributed among these distances:
120 12 0.12
121 17 0.17
122 69 0.70
123 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (121 bp):
TGCTCCACTACAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCCACTACTGCTTAGGGAGAT
AAGACTTGAGGCGATCTGCTCCACTACTGCTTAGAGAGATAAGACTTGATGCGATT
Found at i:7119416 original size:82 final size:81
Alignment explanation
Indices: 7119211--7119447 Score: 343
Period size: 82 Copynumber: 2.9 Consensus size: 81
7119201 TGGCTTCTTT
** *
7119211 TGTCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCCACTACTGCTTAGGG
1 TGTCTGCTCCACTACTGCTT-AGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGG
7119276 AGATAAGA-CTTGATGC
65 AGATAAGATCTTGATGC
* *
7119292 -GATCTGCTCCACTACTGCTTAGAGAGATAAGACTTGATGCGATTTGCTCCACTACTGCTTAGGG
1 TG-TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGG
* *
7119356 AGATAAGATCTGTGGTTC
65 AGATAAGATCT-TGATGC
* * *
7119374 TGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGAGGCGATCTGCTTCATTACTGCTTAGGGA
1 TGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGA
7119439 GATAAGATC
66 GATAAGATC
7119448 GGTTTCTTTC
Statistics
Matches: 140, Mismatches: 12, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
80 50 0.36
81 18 0.13
82 71 0.51
83 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.29
Consensus pattern (81 bp):
TGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGA
GATAAGATCTTGATGC
Found at i:7119551 original size:50 final size:50
Alignment explanation
Indices: 7119482--7120227 Score: 322
Period size: 50 Copynumber: 15.0 Consensus size: 50
7119472 ATCGAGGAAC
* * **
7119482 AAGATTCGCCATTGTAGCTTTAATCTGCTCCACTGCACCGCCAGGGAAGT
1 AAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGCAATGCCAGGGAAGT
* * * ** ** * *
7119532 AAGATTCGTCGTTGCAGCTTCAATCTTTTAAATTGCAATACCAGGGAAGC
1 AAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGCAATGCCAGGGAAGT
* * ** * *
7119582 AAGATTCACCGTCGTAGCTTTAATCTGCTCCATTTTACTGCCAGAGAAGT
1 AAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGCAATGCCAGGGAAGT
* * * * ** ** * *
7119632 GAGATTCGCCGTTGTGGCTTCAATATTTTTAATTGCAATGTC-GAGGAA-C
1 AAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGCAATGCCAG-GGAAGT
* * * * **
7119681 AAGATTC-CCATTGTGGCTTTAATCTGCTCCACTACACCGCCAGGGAAGT
1 AAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGCAATGCCAGGGAAGT
* ** ** * * *
7119730 AAGATTCGCCGTTG-CGACTTTAATCTTTTAAATTGCAATGTCGGGGAAGC
1 AAGATTCGCCGTTGTAG-CTTTAATCTGCTCCATTGCAATGCCAGGGAAGT
* * **
7119780 AAGATTCGCCTTTGTAGCTTTAATCTGCTCCACTGC-ATCGCCATAGAAGT
1 AAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGCAAT-GCCAGGGAAGT
* * * * ** ** ** *
7119830 AAGATTCGCCGTTATGGCTTCAATCT-TTTAATTTGCAATTTCAGCAAAGC
1 AAGATTCGCCGTTGTAGCTTTAATCTGCTCCA-TTGCAATGCCAGGGAAGT
* * * *** *
7119880 AAGATTCACCGTCGTAGCTTTAATCTGCTCCACTGCACCACCAAGGAAGT
1 AAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGCAATGCCAGGGAAGT
* * * ** ** * * *
7119930 AAGATTTGCCGTTGCAGCTTCAATCTTTTTAATTGCAATGTCGGGGAA-C
1 AAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGCAATGCCAGGGAAGT
* * * * * *** **
7119979 ACGATTCACCGTTGTAGCTTCAATCAGCTCCACTGCACCACCAAAGAAGT
1 AAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGCAATGCCAGGGAAGT
* * * ** ** * * * *
7120029 AAGATTCACCGTTG-CGACTTCAATCTTTTTAATTACAATGTCGGGGAAGC
1 AAGATTCGCCGTTGTAG-CTTTAATCTGCTCCATTGCAATGCCAGGGAAGT
* * * * * * *
7120079 AGGATTCACCGTCGTAGCTTCAATCTGATCCACTGC-ATCGCTAGGGAAGT
1 AAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGCAAT-GCCAGGGAAGT
* ** * ** ** * * *
7120129 AAGATTCGCCATTGCGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGC
1 AAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGCAATGCCAGGGAAGT
* * *
7120179 AAGATTCGCCGTTGTAGCTTTAATCTGCTCCACTGTACTGCCAGGGAAG
1 AAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGCAATGCCAGGGAAG
7120228 ATAACTTCAT
Statistics
Matches: 474, Mismatches: 207, Indels: 30
0.67 0.29 0.04
Matches are distributed among these distances:
48 26 0.05
49 54 0.11
50 386 0.81
51 8 0.02
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (50 bp):
AAGATTCGCCGTTGTAGCTTTAATCTGCTCCATTGCAATGCCAGGGAAGT
Found at i:7119654 original size:100 final size:100
Alignment explanation
Indices: 7119466--7120227 Score: 915
Period size: 100 Copynumber: 7.7 Consensus size: 100
7119456 TCAAATTGAC
* * * * *
7119466 TGCAATATCGAGGAA-CAAGATTCGCCATTGTAGCTTTAATCTGCTCCACTGCACCGCCAGGGAA
1 TGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTTAATCTGCTCCACTGCACCGCCAGAGAA
* * *
7119530 GTAAGATTCGTCGTTGCAGCTTCAATCTTTTAAAT
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
** * * * ** *
7119565 TGCAATACCAGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCCATTTTACTGCCAGAGAA
1 TGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTTAATCTGCTCCACTGCACCGCCAGAGAA
* * *
7119630 GTGAGATTCGCCGTTGTGGCTTCAATATTTTTAAT
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
* * * * *
7119665 TGCAATGTCGAGGAA-CAAGATTC-CCATTGTGGCTTTAATCTGCTCCACTACACCGCCAGGGAA
1 TGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTTAATCTGCTCCACTGCACCGCCAGAGAA
* * *
7119728 GTAAGATTCGCCGTTGCGACTTTAATCTTTTAAAT
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
* * * *
7119763 TGCAATGTCGGGGAAGCAAGATTCGCCTTTGTAGCTTTAATCTGCTCCACTGCATCGCCATAGAA
1 TGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTTAATCTGCTCCACTGCACCGCCAGAGAA
**
7119828 GTAAGATTCGCCGTTATGGCTTCAATC-TTTTAATT
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAA-T
* * ** * *
7119863 TGCAATTTCAGCAAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCCACTGCACCACCA-AGGA
1 TGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTTAATCTGCTCCACTGCACCGCCAGA-GA
* *
7119927 AGTAAGATTTGCCGTTGCAGCTTCAATCTTTTTAAT
65 AGTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
* * * * *
7119963 TGCAATGTCGGGGAA-CACGATTCACCGTTGTAGCTTCAATCAGCTCCACTGCACCACCAAAGAA
1 TGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTTAATCTGCTCCACTGCACCGCCAGAGAA
* *
7120027 GTAAGATTCACCGTTGCGACTTCAATCTTTTTAAT
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
* * * * * * * *
7120062 TACAATGTCGGGGAAGCAGGATTCACCGTCGTAGCTTCAATCTGATCCACTGCATCGCTAGGGAA
1 TGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTTAATCTGCTCCACTGCACCGCCAGAGAA
*
7120127 GTAAGATTCGCCATTGCGGCTTCAATCTTTTTAAT
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
* * * *
7120162 TGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGCTCCACTGTACTGCCAGGGAA
1 TGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTTAATCTGCTCCACTGCACCGCCAGAGAA
7120227 G
66 G
7120228 ATAACTTCAT
Statistics
Matches: 560, Mismatches: 95, Indels: 15
0.84 0.14 0.02
Matches are distributed among these distances:
98 75 0.13
99 122 0.22
100 357 0.64
101 6 0.01
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (100 bp):
TGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTTAATCTGCTCCACTGCACCGCCAGAGAA
GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
Found at i:7120138 original size:299 final size:297
Alignment explanation
Indices: 7119468--7120213 Score: 965
Period size: 299 Copynumber: 2.5 Consensus size: 297
7119458 AAATTGACTG
* * * * * *
7119468 CAATATCGAGGAA-CAAGATTCGCCATTGTAGCTTTAATCTGCTCCACTGCACCGCCAGGGAAGT
1 CAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCCACTGCATCGCCAGGGAAGT
* * *
7119532 AAGATTCGTCGTTGCAGCTTCAATCTTTTAAATTGCAATACCAGGGAAGCAAGATTCACCGTCGT
66 AAGATTCGCCGTTGCGGCTTCAATCTTTT-AATTGCAATATCAGGGAAGCAAGATTCACCGTCGT
* ** ** * **
7119597 AGCTTTAATCTGCTCCATTTTACTGCCAGAGAAGTGAGATTCGCCGTTGTGGCTTCAATATTTTT
130 AGCTTTAATCTGCTCCACTGCACCACCAGAGAAGTAAGATTCGCCGTTGCAGCTTCAATATTTTT
* * * * **
7119662 AATTGCAATGTCGAGGAACAAGATTCCCATTGTGGCTTTAATCTGCTCCACTACACCGCCAGGGA
195 AATTGCAATGTCGAGGAACAAGATTCCCATTGTAGCTTCAATCAGCTCCACTACACCACCAAAGA
* * *
7119727 AGTAAGATTCGCCGTTGCGACTTTAATCTTTTAAATTG
260 AGTAAGATTCACCGTTGCGACTTCAATCTTTTAAATTA
* * * **
7119765 CAATGTCGGGGAAGCAAGATTCGCCTTTGTAGCTTTAATCTGCTCCACTGCATCGCCATAGAAGT
1 CAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCCACTGCATCGCCAGGGAAGT
** * **
7119830 AAGATTCGCCGTTATGGCTTCAATCTTTTAATTTGCAATTTCAGCAAAGCAAGATTCACCGTCGT
66 AAGATTCGCCGTTGCGGCTTCAATCTTTTAA-TTGCAATATCAGGGAAGCAAGATTCACCGTCGT
* *
7119895 AGCTTTAATCTGCTCCACTGCACCACCA-AGGAAGTAAGATTTGCCGTTGCAGCTTCAATCTTTT
130 AGCTTTAATCTGCTCCACTGCACCACCAGA-GAAGTAAGATTCGCCGTTGCAGCTTCAATATTTT
* * * *
7119959 TAATTGCAATGTCGGGGAACACGATTCACCGTTGTAGCTTCAATCAGCTCCACTGCACCACCAAA
194 TAATTGCAATGTCGAGGAACAAGATTC-CCATTGTAGCTTCAATCAGCTCCACTACACCACCAAA
*
7120024 GAAGTAAGATTCACCGTTGCGACTTCAATCTTTTTAATTA
258 GAAGTAAGATTCACCGTTGCGACTTCAATCTTTTAAATTA
* * * *
7120064 CAATGTCGGGGAAGCAGGATTCACCGTCGTAGCTTCAATCTGATCCACTGCATCGCTAGGGAAGT
1 CAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCCACTGCATCGCCAGGGAAGT
* * * * *
7120129 AAGATTCGCCATTGCGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGT
66 AAGATTCGCCGTTGCGGCTTCAATC-TTTTAATTGCAATATCAGGGAAGCAAGATTCACCGTCGT
7120194 AGCTTTAATCTGCTCCACTG
130 AGCTTTAATCTGCTCCACTG
7120214 TACTGCCAGG
Statistics
Matches: 388, Mismatches: 56, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
297 14 0.04
298 178 0.46
299 190 0.49
300 6 0.02
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (297 bp):
CAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCCACTGCATCGCCAGGGAAGT
AAGATTCGCCGTTGCGGCTTCAATCTTTTAATTGCAATATCAGGGAAGCAAGATTCACCGTCGTA
GCTTTAATCTGCTCCACTGCACCACCAGAGAAGTAAGATTCGCCGTTGCAGCTTCAATATTTTTA
ATTGCAATGTCGAGGAACAAGATTCCCATTGTAGCTTCAATCAGCTCCACTACACCACCAAAGAA
GTAAGATTCACCGTTGCGACTTCAATCTTTTAAATTA
Found at i:7120572 original size:24 final size:24
Alignment explanation
Indices: 7120528--7120573 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
7120518 TTGCCCCCAC
*
7120528 TGTAATCTTCAAAGTTCAATCCGT
1 TGTAATCTTCAAAGTTAAATCCGT
* *
7120552 TGTAATCTTTAAGGTTAAATCC
1 TGTAATCTTCAAAGTTAAATCC
7120574 ACGGTAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.39
Consensus pattern (24 bp):
TGTAATCTTCAAAGTTAAATCCGT
Found at i:7126965 original size:21 final size:21
Alignment explanation
Indices: 7126916--7126965 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
7126906 TATAAATGGG
* *
7126916 AATAAAAAAAGAACAATAAAT
1 AATAAAAAAAGAAAAAGAAAT
7126937 AA-ACAAAATAA-AAAAAGAAAT
1 AATA-AAAA-AAGAAAAAGAAAT
7126958 AATAAAAA
1 AATAAAAA
7126966 CAAGTCAGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
20 1 0.04
21 20 0.83
22 3 0.12
ACGTcount: A:0.80, C:0.04, G:0.04, T:0.12
Consensus pattern (21 bp):
AATAAAAAAAGAAAAAGAAAT
Found at i:7130411 original size:26 final size:26
Alignment explanation
Indices: 7130375--7130433 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 26
7130365 TGTTTTCTTG
*
7130375 AAATTTTACTAGGGCTGAAATAGTCA
1 AAATTTTACTAGGGCTAAAATAGTCA
* *
7130401 AAATTTTACTAGGGGTAAAATCGTCA
1 AAATTTTACTAGGGCTAAAATAGTCA
7130427 AAATTTT
1 AAATTTT
7130434 GTTAGAGGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.39, C:0.10, G:0.17, T:0.34
Consensus pattern (26 bp):
AAATTTTACTAGGGCTAAAATAGTCA
Found at i:7130443 original size:26 final size:26
Alignment explanation
Indices: 7130375--7130449 Score: 89
Period size: 26 Copynumber: 2.9 Consensus size: 26
7130365 TGTTTTCTTG
*
7130375 AAATTTTACTAG-GGCTGAAATAGTCA
1 AAATTTTACTAGAGG-TAAAATAGTCA
* *
7130401 AAATTTTACTAGGGGTAAAATCGTCA
1 AAATTTTACTAGAGGTAAAATAGTCA
**
7130427 AAATTTTGTTAGAGGTAAAATAG
1 AAATTTTACTAGAGGTAAAATAG
7130450 AGATAAGAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 40 0.95
27 2 0.05
ACGTcount: A:0.40, C:0.08, G:0.20, T:0.32
Consensus pattern (26 bp):
AAATTTTACTAGAGGTAAAATAGTCA
Found at i:7132101 original size:22 final size:23
Alignment explanation
Indices: 7132058--7132101 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
7132048 TATGTTGATT
7132058 AAGGTTAAAAAAATAAATAACAA
1 AAGGTTAAAAAAATAAATAACAA
7132081 AAGGTTAAAAAAATAAA-AACA
1 AAGGTTAAAAAAATAAATAACA
7132102 TCAAAATATC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 4 0.19
23 17 0.81
ACGTcount: A:0.70, C:0.05, G:0.09, T:0.16
Consensus pattern (23 bp):
AAGGTTAAAAAAATAAATAACAA
Found at i:7143577 original size:30 final size:28
Alignment explanation
Indices: 7143553--7143609 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 28
7143543 ATATACTTAC
*
7143553 ACACTTTTTTATTTTTGTAAATATATACA
1 ACACATTTTTA-TTTTGTAAATATATACA
*
7143582 TATACATTTTTATTTTGTAAATATATAC
1 -ACACATTTTTATTTTGTAAATATATAC
7143610 TGGTACATGC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 16 0.64
30 9 0.36
ACGTcount: A:0.35, C:0.09, G:0.04, T:0.53
Consensus pattern (28 bp):
ACACATTTTTATTTTGTAAATATATACA
Found at i:7146494 original size:31 final size:31
Alignment explanation
Indices: 7146449--7146517 Score: 111
Period size: 31 Copynumber: 2.2 Consensus size: 31
7146439 TAACAATTTG
*
7146449 GTCACTTAACTATTCAAAAGTTTTCATTTAA
1 GTCACTGAACTATTCAAAAGTTTTCATTTAA
* *
7146480 GTCACTGAATTATTCAAAAGTTTTTATTTAA
1 GTCACTGAACTATTCAAAAGTTTTCATTTAA
7146511 GTCACTG
1 GTCACTG
7146518 GGCAGTTAAG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.33, C:0.14, G:0.10, T:0.42
Consensus pattern (31 bp):
GTCACTGAACTATTCAAAAGTTTTCATTTAA
Found at i:7150280 original size:13 final size:14
Alignment explanation
Indices: 7150255--7150283 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
7150245 ATGAATCTCG
7150255 AATAAATAATAAAA
1 AATAAATAATAAAA
7150269 AATAAA-AATAAAA
1 AATAAATAATAAAA
7150282 AA
1 AA
7150284 CAACCATATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (14 bp):
AATAAATAATAAAA
Found at i:7151269 original size:18 final size:19
Alignment explanation
Indices: 7151241--7151277 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
7151231 AAAAAAAGTA
7151241 AAATAAAATAAGAGAAAAC
1 AAATAAAATAAGAGAAAAC
7151260 AAAT-AAATAAGAGAAAAC
1 AAATAAAATAAGAGAAAAC
7151278 GAAGAAGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.73, C:0.05, G:0.11, T:0.11
Consensus pattern (19 bp):
AAATAAAATAAGAGAAAAC
Found at i:7155065 original size:21 final size:20
Alignment explanation
Indices: 7155041--7155101 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 20
7155031 AGATGTCAGT
7155041 GATACAAAGGATGATGATGAA
1 GATA-AAAGGATGATGATGAA
* *
7155062 GATAAAGAGGATGATAATGCA
1 GATAAA-AGGATGATGATGAA
*
7155083 GATGAAAAAGATGATGATG
1 GAT-AAAAGGATGATGATG
7155102 GAGCTGATGA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
20 2 0.06
21 29 0.85
22 3 0.09
ACGTcount: A:0.48, C:0.03, G:0.30, T:0.20
Consensus pattern (20 bp):
GATAAAAGGATGATGATGAA
Found at i:7168362 original size:5 final size:5
Alignment explanation
Indices: 7168352--7168379 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
7168342 TAGGTTGCTG
7168352 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
7168380 GAAATGAGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:7171125 original size:19 final size:16
Alignment explanation
Indices: 7171088--7171135 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 16
7171078 AAAACTATAG
7171088 AAAATTATAAAATCAA
1 AAAATTATAAAATCAA
7171104 AAAATATATAAAAGTGCAA
1 AAAAT-TATAAAA-T-CAA
7171123 AAAAGTTATAAAA
1 AAAA-TTATAAAA
7171136 ATGATTATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
16 5 0.18
17 7 0.25
18 1 0.04
19 14 0.50
20 1 0.04
ACGTcount: A:0.67, C:0.04, G:0.06, T:0.23
Consensus pattern (16 bp):
AAAATTATAAAATCAA
Found at i:7171383 original size:23 final size:24
Alignment explanation
Indices: 7171333--7171391 Score: 77
Period size: 25 Copynumber: 2.5 Consensus size: 24
7171323 AAATCATATA
* *
7171333 AATTGTAAAAAAAAATATTACAAT
1 AATTTTAAAAAAAAATATGACAAT
7171357 AATTTTTAAAAAAAAATATGA-AA-
1 AA-TTTTAAAAAAAAATATGACAAT
7171380 AATTTTAAAAAA
1 AATTTTAAAAAA
7171392 CATATAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
22 10 0.31
23 2 0.06
24 4 0.12
25 16 0.50
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (24 bp):
AATTTTAAAAAAAAATATGACAAT
Found at i:7171391 original size:21 final size:20
Alignment explanation
Indices: 7171321--7171410 Score: 63
Period size: 21 Copynumber: 4.0 Consensus size: 20
7171311 TAAATGACTC
* *
7171321 AAAAATCATATAAATTGTAAAA
1 AAAAAT-ATAAAAATT-TTAAA
7171343 AAAAATATTACAATAATTTTTAAAA
1 AAAAATA-TA-AA-AA-TTTT-AAA
7171368 AAAAATATGAAAAATTTTAAA
1 AAAAATAT-AAAAATTTTAAA
* *
7171389 AAACATATAAAATTATTTAAA
1 AAAAATATAAAAAT-TTTAAA
7171410 A
1 A
7171411 TATTACTAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 15
0.75 0.05 0.20
Matches are distributed among these distances:
20 5 0.09
21 18 0.32
22 12 0.21
23 3 0.05
24 6 0.11
25 13 0.23
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.31
Consensus pattern (20 bp):
AAAAATATAAAAATTTTAAA
Found at i:7171808 original size:20 final size:20
Alignment explanation
Indices: 7171771--7171810 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
7171761 ATATACTTAC
* * *
7171771 TTTTTTATTATAATTTTTAA
1 TTTTTTATAAAAAATTTTAA
7171791 TTTTTTATAAAAAATTTTAA
1 TTTTTTATAAAAAATTTTAA
7171811 ATTTAATTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTTTTATAAAAAATTTTAA
Found at i:7171919 original size:9 final size:9
Alignment explanation
Indices: 7171862--7171997 Score: 56
Period size: 9 Copynumber: 15.3 Consensus size: 9
7171852 TTTTTAAATT
7171862 TTTTTCATAA
1 TTTTT-ATAA
*
7171872 TTTTT-TCA
1 TTTTTATAA
*
7171880 TTTTCT-TAT
1 TTTT-TATAA
*
7171889 TTTTTGTAA
1 TTTTTATAA
**
7171898 TTCATAT-A
1 TTTTTATAA
7171906 TTTTTATAA
1 TTTTTATAA
7171915 TTTTTAT-A
1 TTTTTATAA
*
7171923 -TTTTA-AT
1 TTTTTATAA
*
7171930 TTTTTATAT
1 TTTTTATAA
* *
7171939 TCTTTTGTAC
1 T-TTTTATAA
7171949 TTTTCTAT-A
1 TTTT-TATAA
7171958 TTTTTATAAAA
1 TTTTTAT--AA
7171969 TTTTTA-ATA
1 TTTTTATA-A
7171978 TTTTTAT-A
1 TTTTTATAA
*
7171986 TTTTCATAA
1 TTTTTATAA
7171995 TTT
1 TTT
7171998 ACATATTTTC
Statistics
Matches: 97, Mismatches: 15, Indels: 29
0.69 0.11 0.21
Matches are distributed among these distances:
7 5 0.05
8 30 0.31
9 41 0.42
10 14 0.14
11 7 0.07
ACGTcount: A:0.26, C:0.06, G:0.01, T:0.67
Consensus pattern (9 bp):
TTTTTATAA
Found at i:7171965 original size:8 final size:8
Alignment explanation
Indices: 7171902--7172020 Score: 73
Period size: 8 Copynumber: 14.0 Consensus size: 8
7171892 TTGTAATTCA
7171902 TATATTTT
1 TATATTTT
7171910 TATAATTTT
1 TAT-ATTTT
7171919 TATATTTT
1 TATATTTT
*
7171927 AAT-TTTT
1 TATATTTT
7171934 TATATTCTTT
1 TATA-T-TTT
*
7171944 TGTACTTTT
1 TATA-TTTT
7171953 CTATATTTT
1 -TATATTTT
7171962 TATAAAATTTT
1 TAT---ATTTT
7171973 TAATATTTT
1 T-ATATTTT
7171982 TATATTTT
1 TATATTTT
* *
7171990 CATAATTTA
1 TAT-ATTTT
*
7171999 CATATTTT
1 TATATTTT
*
7172007 CAT-TTTT
1 TATATTTT
7172014 T-TATTTT
1 TATATTTT
7172021 AAATAATTTT
Statistics
Matches: 91, Mismatches: 9, Indels: 23
0.74 0.07 0.19
Matches are distributed among these distances:
6 1 0.01
7 14 0.15
8 29 0.32
9 29 0.32
10 10 0.11
11 6 0.07
12 2 0.02
ACGTcount: A:0.27, C:0.05, G:0.01, T:0.67
Consensus pattern (8 bp):
TATATTTT
Found at i:7171997 original size:17 final size:17
Alignment explanation
Indices: 7171863--7172030 Score: 57
Period size: 17 Copynumber: 9.8 Consensus size: 17
7171853 TTTTAAATTT
7171863 TTTTCATAATTTTT-TCA
1 TTTTCATAATTTTTAT-A
* * *
7171880 TTTTCTTATTTTTTGTA
1 TTTTCATAATTTTTATA
*
7171897 -ATTCATATATTTTTATAA
1 TTTTCATA-ATTTTTAT-A
* *
7171915 TTTTTAT-ATTTTAAT-
1 TTTTCATAATTTTTATA
* * *
7171930 TTTTTATATTCTTTTGTA
1 TTTTCATAAT-TTTTATA
7171948 CTTTTC-TATATTTTTATAAAA
1 -TTTTCATA-ATTTTTAT---A
*
7171969 TTTTTA-ATATTTTTATA
1 TTTTCATA-ATTTTTATA
**
7171986 TTTTCATAATTTACATA
1 TTTTCATAATTTTTATA
7172003 TTTTCAT--TTTTT-TA
1 TTTTCATAATTTTTATA
*
7172017 TTTTAAATAATTTT
1 TTTT-CATAATTTT
7172031 AATGCTTTTT
Statistics
Matches: 112, Mismatches: 22, Indels: 34
0.67 0.13 0.20
Matches are distributed among these distances:
14 6 0.05
15 12 0.11
16 6 0.05
17 54 0.48
18 10 0.09
19 9 0.08
20 14 0.12
21 1 0.01
ACGTcount: A:0.27, C:0.06, G:0.01, T:0.66
Consensus pattern (17 bp):
TTTTCATAATTTTTATA
Found at i:7172125 original size:28 final size:27
Alignment explanation
Indices: 7172066--7172161 Score: 95
Period size: 27 Copynumber: 3.4 Consensus size: 27
7172056 AATTTTATAA
*
7172066 TTTATATATTTTTTGTAAGCTATAATACTT
1 TTTATAT-TTTTTTGTAA-CTTTAATA-TT
* *
7172096 TTTATATTTTTTTG-CACTTTTATATAT
1 TTTATATTTTTTTGTAACTTTAATAT-T
*
7172123 TTTACAATTTTTTTGTAACTTTAATATT
1 TTTA-TATTTTTTTGTAACTTTAATATT
*
7172151 TTTATAATTTT
1 TTTATATTTTT
7172162 AATATTTTTA
Statistics
Matches: 55, Mismatches: 8, Indels: 9
0.76 0.11 0.12
Matches are distributed among these distances:
26 1 0.02
27 16 0.29
28 15 0.27
29 16 0.29
30 7 0.13
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.62
Consensus pattern (27 bp):
TTTATATTTTTTTGTAACTTTAATATT
Found at i:7172134 original size:29 final size:28
Alignment explanation
Indices: 7172074--7172161 Score: 90
Period size: 28 Copynumber: 3.1 Consensus size: 28
7172064 AATTTATATA
* *
7172074 TTTTTTGTAAGCTATAATACTTTTTA-TAT
1 TTTTTTGTAA-CTTTAATA-TTTTTACAAT
* *
7172103 TTTTTTG-CACTTTTATATATTTTACAAT
1 TTTTTTGTAACTTTAATAT-TTTTACAAT
*
7172131 TTTTTTGTAACTTTAATATTTTTATAAT
1 TTTTTTGTAACTTTAATATTTTTACAAT
7172159 TTT
1 TTT
7172162 AATATTTTTA
Statistics
Matches: 49, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 11 0.22
28 21 0.43
29 16 0.33
ACGTcount: A:0.26, C:0.07, G:0.05, T:0.62
Consensus pattern (28 bp):
TTTTTTGTAACTTTAATATTTTTACAAT
Found at i:7172152 original size:17 final size:17
Alignment explanation
Indices: 7172132--7172172 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
7172122 TTTTACAATT
*
7172132 TTTTTGTAACTTTAATA
1 TTTTTATAACTTTAATA
*
7172149 TTTTTATAATTTTAATA
1 TTTTTATAACTTTAATA
7172166 TTTTTAT
1 TTTTTAT
7172173 GATTATCTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.66
Consensus pattern (17 bp):
TTTTTATAACTTTAATA
Found at i:7172160 original size:9 final size:9
Alignment explanation
Indices: 7172148--7172218 Score: 54
Period size: 9 Copynumber: 7.6 Consensus size: 9
7172138 TAACTTTAAT
7172148 ATTTTTATA
1 ATTTTTATA
*
7172157 ATTTTAAT-
1 ATTTTTATA
*
7172165 ATTTTTATG
1 ATTTTTATA
*
7172174 ATTATCTATA
1 ATT-TTTATA
*
7172184 ATTTTTTTATG
1 A--TTTTTATA
*
7172195 ATTTTTATT
1 ATTTTTATA
7172204 ATTTTTAATA
1 ATTTTT-ATA
7172214 ATTTT
1 ATTTT
7172219 AAGTATAAAA
Statistics
Matches: 49, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
8 7 0.14
9 23 0.47
10 12 0.24
11 5 0.10
12 2 0.04
ACGTcount: A:0.30, C:0.01, G:0.03, T:0.66
Consensus pattern (9 bp):
ATTTTTATA
Found at i:7172218 original size:27 final size:26
Alignment explanation
Indices: 7172142--7172219 Score: 68
Period size: 30 Copynumber: 2.8 Consensus size: 26
7172132 TTTTTGTAAC
*
7172142 TTTAATATTTTT-ATAATTTTAATATT
1 TTTATTATTTTTAATAATTTT-ATATT
* **
7172168 TTTATGATTATCTATAATTTTTTTATGATT
1 TTTATTATT-T-T-TAATAATTTTAT-ATT
7172198 TTTATTATTTTTAATAATTTTA
1 TTTATTATTTTTAATAATTTTA
7172220 AGTATAAAAC
Statistics
Matches: 40, Mismatches: 7, Indels: 9
0.71 0.12 0.16
Matches are distributed among these distances:
26 7 0.17
27 10 0.25
28 2 0.05
29 4 0.10
30 17 0.43
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.65
Consensus pattern (26 bp):
TTTATTATTTTTAATAATTTTATATT
Found at i:7187172 original size:20 final size:20
Alignment explanation
Indices: 7187122--7187173 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 20
7187112 AAATATTTAA
*
7187122 ATATTTTAAAAATATAAAATG
1 ATATTTTAATAA-ATAAAATG
7187143 AGTA--TT-ATAAATAAAATG
1 A-TATTTTAATAAATAAAATG
7187161 ATATTTTAATAAA
1 ATATTTTAATAAA
7187174 GGTTAGTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 9
0.72 0.03 0.25
Matches are distributed among these distances:
17 2 0.08
18 9 0.35
19 5 0.19
20 7 0.27
21 1 0.04
22 2 0.08
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (20 bp):
ATATTTTAATAAATAAAATG
Found at i:7187516 original size:25 final size:25
Alignment explanation
Indices: 7187468--7187520 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 25
7187458 CTTTTTTTAT
*
7187468 ATTTTTAATTAATCAATAATAAAATA
1 ATTTTTAATTAA-CAATAAGAAAATA
7187494 ATTTTTAATTAA-AATTAAGAAAATA
1 ATTTTTAATTAACAA-TAAGAAAATA
7187519 AT
1 AT
7187521 ATATAAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 2 0.08
25 11 0.44
26 12 0.48
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (25 bp):
ATTTTTAATTAACAATAAGAAAATA
Found at i:7194636 original size:11 final size:11
Alignment explanation
Indices: 7194620--7194654 Score: 70
Period size: 11 Copynumber: 3.2 Consensus size: 11
7194610 TGATTTTGTC
7194620 TTAGTGGAAAA
1 TTAGTGGAAAA
7194631 TTAGTGGAAAA
1 TTAGTGGAAAA
7194642 TTAGTGGAAAA
1 TTAGTGGAAAA
7194653 TT
1 TT
7194655 TACAGTATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.43, C:0.00, G:0.26, T:0.31
Consensus pattern (11 bp):
TTAGTGGAAAA
Found at i:7196213 original size:31 final size:32
Alignment explanation
Indices: 7196178--7196239 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
7196168 ATCTCCCTTG
* *
7196178 ACCTTCCACCTTTCATCTTCTTT-AACCTTTA
1 ACCTTCAACCTTCCATCTTCTTTAAACCTTTA
*
7196209 ACCTTTAACCTTCCATCTTCTTTAAACCTTT
1 ACCTTCAACCTTCCATCTTCTTTAAACCTTT
7196240 CATCTCCTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 20 0.74
32 7 0.26
ACGTcount: A:0.21, C:0.34, G:0.00, T:0.45
Consensus pattern (32 bp):
ACCTTCAACCTTCCATCTTCTTTAAACCTTTA
Found at i:7196238 original size:18 final size:17
Alignment explanation
Indices: 7196185--7196255 Score: 58
Period size: 18 Copynumber: 4.2 Consensus size: 17
7196175 TTGACCTTCC
*
7196185 ACCTTTCATCTTCTTTA
1 ACCTTCCATCTTCTTTA
* *
7196202 ACCTT-TAAC--CTTTA
1 ACCTTCCATCTTCTTTA
7196216 ACCTTCCATCTTCTTTAA
1 ACCTTCCATCTTCTTT-A
* *
7196234 ACCTTTCATCTCCTTGTA
1 ACCTTCCATCTTCTT-TA
7196252 ACCT
1 ACCT
7196256 CATTTTCTTA
Statistics
Matches: 43, Mismatches: 6, Indels: 9
0.74 0.10 0.16
Matches are distributed among these distances:
14 10 0.23
15 2 0.05
16 2 0.05
17 9 0.21
18 19 0.44
19 1 0.02
ACGTcount: A:0.21, C:0.32, G:0.01, T:0.45
Consensus pattern (17 bp):
ACCTTCCATCTTCTTTA
Found at i:7197871 original size:17 final size:18
Alignment explanation
Indices: 7197839--7197872 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7197829 TGTTTTAAAC
*
7197839 TATTTATGAAATTTTATA
1 TATTTATGAAAATTTATA
7197857 TATTT-TGAAAATTTAT
1 TATTTATGAAAATTTAT
7197873 GTCACATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (18 bp):
TATTTATGAAAATTTATA
Found at i:7211332 original size:2 final size:2
Alignment explanation
Indices: 7211325--7211350 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7211315 CGACCGAGGC
7211325 GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA
7211351 AAAGAAAGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7219658 original size:135 final size:135
Alignment explanation
Indices: 7219416--7219687 Score: 490
Period size: 135 Copynumber: 2.0 Consensus size: 135
7219406 ACTTGTTGAA
7219416 TGATTGTGGTTGACAAGATTAATGTTTATTAACATTGTGTTAAATGTATAAAATGAAACGGGTAT
1 TGATTGTGGTTGACAAGATTAATGTTTATTAACATTGTGTTAAATGTATAAAATGAAACGGGTAT
* * * *
7219481 ATAAAACAGTTATATGGAATGAGAGACTGATATGAATTATTTAAACGAAATGTAATTTATAAAAT
66 ATAAAACAGTTATATAGAATAAGAGACTGATATGAATTATTTAAACAAAATGTAATTTACAAAAT
7219546 GATTT
131 GATTT
*
7219551 TGATTGTGGTTGACAGGATTAATGTTTATTAACATTGTGTTAAATGTATAAAATGAAACGGGTAT
1 TGATTGTGGTTGACAAGATTAATGTTTATTAACATTGTGTTAAATGTATAAAATGAAACGGGTAT
*
7219616 ATAAAATAGTTATATAGAATAAGAGACTGATATGAATTATTTAAACAAAATGTAATTTACAAAAT
66 ATAAAACAGTTATATAGAATAAGAGACTGATATGAATTATTTAAACAAAATGTAATTTACAAAAT
7219681 GATTT
131 GATTT
7219686 TG
1 TG
7219688 TGTTAAATGT
Statistics
Matches: 131, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
135 131 1.00
ACGTcount: A:0.41, C:0.04, G:0.18, T:0.36
Consensus pattern (135 bp):
TGATTGTGGTTGACAAGATTAATGTTTATTAACATTGTGTTAAATGTATAAAATGAAACGGGTAT
ATAAAACAGTTATATAGAATAAGAGACTGATATGAATTATTTAAACAAAATGTAATTTACAAAAT
GATTT
Found at i:7219719 original size:13 final size:13
Alignment explanation
Indices: 7219701--7219828 Score: 105
Period size: 13 Copynumber: 9.7 Consensus size: 13
7219691 TAAATGTGTA
7219701 ATATGAAATGGTT
1 ATATGAAATGGTT
* * *
7219714 ATATGAGACGATT
1 ATATGAAATGGTT
*
7219727 ATACGAAATGGTT
1 ATATGAAATGGTT
* **
7219740 ATATAAAATGAAT
1 ATATGAAATGGTT
*
7219753 ATATGAAATGATT
1 ATATGAAATGGTT
*
7219766 ATATGAATTGGTT
1 ATATGAAATGGTT
* *
7219779 ATATGGAAATAGAT
1 ATAT-GAAATGGTT
*
7219793 ATACT-AAATGATT
1 ATA-TGAAATGGTT
*
7219806 ATATGAATTGGTT
1 ATATGAAATGGTT
7219819 ATATGGAAAT
1 ATAT-GAAAT
7219829 AATTATAAAG
Statistics
Matches: 87, Mismatches: 24, Indels: 7
0.74 0.20 0.06
Matches are distributed among these distances:
12 1 0.01
13 72 0.83
14 13 0.15
15 1 0.01
ACGTcount: A:0.43, C:0.02, G:0.19, T:0.36
Consensus pattern (13 bp):
ATATGAAATGGTT
Found at i:7219749 original size:39 final size:39
Alignment explanation
Indices: 7219713--7219861 Score: 110
Period size: 40 Copynumber: 3.8 Consensus size: 39
7219703 ATGAAATGGT
*
7219713 TATATGAGACGATTATACGAAATGGTTATATAAAATGAA
1 TATATGAAACGATTATACGAAATGGTTATATAAAATGAA
* * * *
7219752 TATATGAAATGATTATATGAATTGGTTATATGGAAAT-AGA
1 TATATGAAACGATTATACGAAATGGTTATAT-AAAATGA-A
* * * *
7219792 TATACT-AAATGATTATATGAATTGGTTATATGGAAAT-AA
1 TATA-TGAAACGATTATACGAAATGGTTATAT-AAAATGAA
* * *
7219831 T-TAT-AAAGTGTTTATACGAAATGTTTATATA
1 TATATGAAA-CGATTATACGAAATGGTTATATA
7219862 GATAGATATG
Statistics
Matches: 96, Mismatches: 10, Indels: 10
0.83 0.09 0.09
Matches are distributed among these distances:
37 4 0.04
38 20 0.21
39 30 0.31
40 41 0.43
41 1 0.01
ACGTcount: A:0.43, C:0.03, G:0.17, T:0.38
Consensus pattern (39 bp):
TATATGAAACGATTATACGAAATGGTTATATAAAATGAA
Found at i:7219781 original size:26 final size:26
Alignment explanation
Indices: 7219701--7219860 Score: 128
Period size: 26 Copynumber: 6.2 Consensus size: 26
7219691 TAAATGTGTA
* *
7219701 ATATGAAATGGTTATATGAGACGATT
1 ATATGAAATGGTTATATGAAATGATT
* * *
7219727 ATACGAAATGGTTATATAAAATGAAT
1 ATATGAAATGGTTATATGAAATGATT
* * *
7219753 ATATGAAATGATTATATGAATTGGTT
1 ATATGAAATGGTTATATGAAATGATT
* *
7219779 ATATGGAAATAGATATACT-AAATGATT
1 ATAT-GAAATGGTTATA-TGAAATGATT
* *
7219806 ATATGAATTGGTTATATGGAAATAATT
1 ATATGAAATGGTTATAT-GAAATGATT
* * * *
7219833 ATA--AAGTGTTTATACGAAATGTTT
1 ATATGAAATGGTTATATGAAATGATT
7219857 ATAT
1 ATAT
7219861 AGATAGATAT
Statistics
Matches: 104, Mismatches: 25, Indels: 11
0.74 0.18 0.08
Matches are distributed among these distances:
24 10 0.10
25 10 0.10
26 54 0.52
27 29 0.28
28 1 0.01
ACGTcount: A:0.42, C:0.03, G:0.17, T:0.38
Consensus pattern (26 bp):
ATATGAAATGGTTATATGAAATGATT
Found at i:7219806 original size:40 final size:41
Alignment explanation
Indices: 7219713--7219829 Score: 152
Period size: 40 Copynumber: 2.9 Consensus size: 41
7219703 ATGAAATGGT
* * * * *
7219713 TATATGAGACGATTATACGAAATGGTTATAT-AAAAT-GAA
1 TATATGAAATGATTATATGAATTGGTTATATGGAAATAGAA
7219752 TATATGAAATGATTATATGAATTGGTTATATGGAAATAG-A
1 TATATGAAATGATTATATGAATTGGTTATATGGAAATAGAA
7219792 TATACT-AAATGATTATATGAATTGGTTATATGGAAATA
1 TATA-TGAAATGATTATATGAATTGGTTATATGGAAATA
7219830 ATTATAAAGT
Statistics
Matches: 70, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
39 27 0.39
40 41 0.59
41 2 0.03
ACGTcount: A:0.44, C:0.03, G:0.18, T:0.36
Consensus pattern (41 bp):
TATATGAAATGATTATATGAATTGGTTATATGGAAATAGAA
Found at i:7222388 original size:39 final size:39
Alignment explanation
Indices: 7222332--7222540 Score: 301
Period size: 39 Copynumber: 5.4 Consensus size: 39
7222322 AATGGAATAT
* *
7222332 TGATTATACTGAATGCTTGCTCAAACGAGCATTATGCAC
1 TGATTATACTAAATGCTTGCTCAAACGAGCATTATCCAC
* * *
7222371 TAATTATACTAAATGCTTGCTTAAACGAGTATTATCCAC
1 TGATTATACTAAATGCTTGCTCAAACGAGCATTATCCAC
* * *
7222410 TAATTATACTGAATGCTTGCTCAAACAAGCATTATCCAC
1 TGATTATACTAAATGCTTGCTCAAACGAGCATTATCCAC
* * * *
7222449 TGATTATACTGAATGCTTGCTCAAACGAGTAATATTCAC
1 TGATTATACTAAATGCTTGCTCAAACGAGCATTATCCAC
7222488 TGATTATACTAAATGCTTGCTCAAACGAGCATTATCCAC
1 TGATTATACTAAATGCTTGCTCAAACGAGCATTATCCAC
*
7222527 TGGTTATACTAAAT
1 TGATTATACTAAAT
7222541 AAGATTTTCT
Statistics
Matches: 151, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 151 1.00
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.33
Consensus pattern (39 bp):
TGATTATACTAAATGCTTGCTCAAACGAGCATTATCCAC
Found at i:7224297 original size:16 final size:16
Alignment explanation
Indices: 7224276--7224306 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7224266 TTGGATTGAA
*
7224276 AAAAATTATTTAATTG
1 AAAAATTAATTAATTG
7224292 AAAAATTAATTAATT
1 AAAAATTAATTAATT
7224307 TAATTTAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (16 bp):
AAAAATTAATTAATTG
Found at i:7224309 original size:21 final size:18
Alignment explanation
Indices: 7224270--7224311 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 18
7224260 TTAGAATTGG
7224270 ATTGAAAAAAATTATTTA
1 ATTGAAAAAAATTATTTA
7224288 ATTGAAAAATTAATTAATTTA
1 ATTGAAAAA--AATT-ATTTA
7224309 ATT
1 ATT
7224312 TAATTTAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 9 0.43
20 4 0.19
21 8 0.38
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (18 bp):
ATTGAAAAAAATTATTTA
Found at i:7225643 original size:53 final size:52
Alignment explanation
Indices: 7225585--7225691 Score: 119
Period size: 51 Copynumber: 2.0 Consensus size: 52
7225575 GCATAATAAT
* *
7225585 AAATTTAACTCTCCAATATTTATAAATTCTA-TCAATTTAGTTCTAATT-TTAAA
1 AAATTTAACCCT-CAAT-TTTACAAATTCTATTC-ATTTAGTTCTAATTCTTAAA
* * * *
7225638 AAATTTAGCCCTCAATTTTACATATTCTATTCATTTAGTTTTACTTCTTAAA
1 AAATTTAACCCTCAATTTTACAAATTCTATTCATTTAGTTCTAATTCTTAAA
7225690 AA
1 AA
7225692 TTAAAATTTA
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
51 23 0.50
52 13 0.28
53 10 0.22
ACGTcount: A:0.36, C:0.15, G:0.03, T:0.46
Consensus pattern (52 bp):
AAATTTAACCCTCAATTTTACAAATTCTATTCATTTAGTTCTAATTCTTAAA
Found at i:7226367 original size:20 final size:20
Alignment explanation
Indices: 7226342--7226386 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
7226332 CTTAAATTTT
*
7226342 TTTTATTTATAAGATTATTA
1 TTTTATTTATAAAATTATTA
*
7226362 TTTTATTTATAAAATTTTTA
1 TTTTATTTATAAAATTATTA
7226382 TTTTA
1 TTTTA
7226387 ATAAATAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (20 bp):
TTTTATTTATAAAATTATTA
Found at i:7232580 original size:18 final size:19
Alignment explanation
Indices: 7232570--7232609 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
7232560 ATATAATTTA
7232570 TTATTTTAATATTACAATT
1 TTATTTTAATATTACAATT
*
7232589 TTATTTTAATAATA-AATT
1 TTATTTTAATATTACAATT
7232607 TTA
1 TTA
7232610 AAAACAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (19 bp):
TTATTTTAATATTACAATT
Found at i:7232594 original size:19 final size:18
Alignment explanation
Indices: 7232557--7232609 Score: 63
Period size: 19 Copynumber: 2.9 Consensus size: 18
7232547 AATAATATAA
*
7232557 TTAAT-ATAATTTATTATT
1 TTAATAATAAATT-TTATT
*
7232575 TTAATATTACAATTTTATT
1 TTAATAATA-AATTTTATT
7232594 TTAATAATAAATTTTA
1 TTAATAATAAATTTTA
7232610 AAAACAATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 12 0.40
19 15 0.50
20 3 0.10
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.57
Consensus pattern (18 bp):
TTAATAATAAATTTTATT
Found at i:7232960 original size:16 final size:16
Alignment explanation
Indices: 7232939--7232972 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
7232929 TACTTAAAAG
7232939 TTAAAACTAATTGTTA
1 TTAAAACTAATTGTTA
*
7232955 TTAAAATTAATTGTTA
1 TTAAAACTAATTGTTA
7232971 TT
1 TT
7232973 GAATTTATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.41, C:0.03, G:0.06, T:0.50
Consensus pattern (16 bp):
TTAAAACTAATTGTTA
Found at i:7233146 original size:8 final size:8
Alignment explanation
Indices: 7233133--7233157 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
7233123 ATTTAATTAC
7233133 TTTTAACT
1 TTTTAACT
7233141 TTTTAACT
1 TTTTAACT
7233149 TTTTAACT
1 TTTTAACT
7233157 T
1 T
7233158 AAATATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (8 bp):
TTTTAACT
Found at i:7234460 original size:13 final size:13
Alignment explanation
Indices: 7234442--7234575 Score: 94
Period size: 13 Copynumber: 10.2 Consensus size: 13
7234432 AATTTAAAAG
*
7234442 TTAAAACATTATA
1 TTAAAACAGTATA
*
7234455 TTAAAACAATATAA
1 TTAAAACAGTAT-A
* *
7234469 TTATAATAGTATA
1 TTAAAACAGTATA
*
7234482 TTAAAACAATATA
1 TTAAAACAGTATA
* *
7234495 TTAAAAAAATATA
1 TTAAAACAGTATA
* *
7234508 TTTATAATAGTATA
1 -TTAAAACAGTATA
7234522 TTAAAACAGTATA
1 TTAAAACAGTATA
* * *
7234535 TTATAA-ATTTTA
1 TTAAAACAGTATA
*
7234547 -TAACAATA-TATTA
1 TTAA-AACAGTA-TA
7234560 TTAAAACAGTATA
1 TTAAAACAGTATA
7234573 TTA
1 TTA
7234576 CATTAAAAAT
Statistics
Matches: 95, Mismatches: 19, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
11 2 0.02
12 7 0.07
13 61 0.64
14 25 0.26
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.39
Consensus pattern (13 bp):
TTAAAACAGTATA
Found at i:7234487 original size:40 final size:40
Alignment explanation
Indices: 7234442--7234537 Score: 156
Period size: 40 Copynumber: 2.4 Consensus size: 40
7234432 AATTTAAAAG
* *
7234442 TTAAAACATTATATTAAAACAATATAATTATAATAGTATA
1 TTAAAACAATATATTAAAAAAATATAATTATAATAGTATA
*
7234482 TTAAAACAATATATTAAAAAAATATATTTATAATAGTATA
1 TTAAAACAATATATTAAAAAAATATAATTATAATAGTATA
*
7234522 TTAAAACAGTATATTA
1 TTAAAACAATATATTA
7234538 TAAATTTTAT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.55, C:0.04, G:0.03, T:0.38
Consensus pattern (40 bp):
TTAAAACAATATATTAAAAAAATATAATTATAATAGTATA
Found at i:7234548 original size:27 final size:26
Alignment explanation
Indices: 7234410--7234542 Score: 99
Period size: 27 Copynumber: 4.9 Consensus size: 26
7234400 AAATTAAATG
*
7234410 TATATTTATAACAGTATATTAAAATTTAA
1 TATA-TTAAAACAGTATATTAAAA--TAA
* *
7234439 -A-AGTTAAAACATTATATTAAAACAA
1 TATA-TTAAAACAGTATATTAAAATAA
* * *
7234464 TATAATTATAATAGTATATTAAAACAA
1 TAT-ATTAAAACAGTATATTAAAATAA
* * * *
7234491 TATATTAAAAAAATATATTTATAATAG
1 TATATTAAAACAGTATA-TTAAAATAA
7234518 TATATTAAAACAGTATATTATAAAT
1 TATATTAAAACAGTATATTA-AAAT
7234543 TTTATAACAA
Statistics
Matches: 83, Mismatches: 16, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
25 2 0.02
26 15 0.18
27 64 0.77
28 2 0.02
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (26 bp):
TATATTAAAACAGTATATTAAAATAA
Found at i:7234710 original size:15 final size:15
Alignment explanation
Indices: 7234690--7234723 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
7234680 AAACTAAAAT
*
7234690 TTAATGTGTTAGAAA
1 TTAATGTGTTACAAA
7234705 TTAATGTGTTACAAA
1 TTAATGTGTTACAAA
7234720 TTAA
1 TTAA
7234724 ATGTATATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.41, C:0.03, G:0.15, T:0.41
Consensus pattern (15 bp):
TTAATGTGTTACAAA
Found at i:7234832 original size:15 final size:13
Alignment explanation
Indices: 7234759--7234850 Score: 114
Period size: 13 Copynumber: 7.0 Consensus size: 13
7234749 AATTTAAAAG
*
7234759 TTAAAACATTATA
1 TTAAAACAATATA
*
7234772 TTAAAACAATACAA
1 TTAAAACAATA-TA
* *
7234786 TTATAACAGTATA
1 TTAAAACAATATA
*
7234799 TTATAACAATATA
1 TTAAAACAATATA
7234812 TTAAAACAATATA
1 TTAAAACAATATA
7234825 TTAAAA-AAGTATA
1 TTAAAACAA-TATA
7234838 TTAAAACAATATA
1 TTAAAACAATATA
7234851 ACCGAACTCA
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
12 2 0.03
13 55 0.80
14 12 0.17
ACGTcount: A:0.58, C:0.08, G:0.02, T:0.33
Consensus pattern (13 bp):
TTAAAACAATATA
Found at i:7235954 original size:8 final size:8
Alignment explanation
Indices: 7235943--7235976 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
7235933 AGTGAAGCAC
7235943 CGTGGAGT
1 CGTGGAGT
7235951 CGTGGAGT
1 CGTGGAGT
7235959 CGTGGA--
1 CGTGGAGT
7235965 CGTGGAGT
1 CGTGGAGT
7235973 CGTG
1 CGTG
7235977 AATCGGTGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 6 0.25
8 18 0.75
ACGTcount: A:0.12, C:0.15, G:0.50, T:0.24
Consensus pattern (8 bp):
CGTGGAGT
Found at i:7235971 original size:22 final size:22
Alignment explanation
Indices: 7235943--7235994 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
7235933 AGTGAAGCAC
*
7235943 CGTGGAGTCGTGGAGTC-GTGGA
1 CGTGGAGTCGT-GAATCGGTGGA
7235965 CGTGGAGTCGTGAATCGGTGGA
1 CGTGGAGTCGTGAATCGGTGGA
*
7235987 GGTGGAGT
1 CGTGGAGT
7235995 TGGATCCGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 4 0.15
22 23 0.85
ACGTcount: A:0.15, C:0.12, G:0.50, T:0.23
Consensus pattern (22 bp):
CGTGGAGTCGTGAATCGGTGGA
Found at i:7240213 original size:6 final size:6
Alignment explanation
Indices: 7240204--7240234 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
7240194 TTCTTCTTCT
7240204 CACAGC CACAGC CACAGC CACAGC CACAGC C
1 CACAGC CACAGC CACAGC CACAGC CACAGC C
7240235 TCTTCTTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.32, C:0.52, G:0.16, T:0.00
Consensus pattern (6 bp):
CACAGC
Found at i:7244999 original size:95 final size:95
Alignment explanation
Indices: 7244885--7245075 Score: 337
Period size: 95 Copynumber: 2.0 Consensus size: 95
7244875 GCTAAACCCA
*
7244885 ACACATCCGTATTTAACAAGGCTAAGATACTAATAAATGTGCAATGAAAAGTAACCGGCTCGAGT
1 ACACATCCGTATTTAACAAGGCTAAGATACTAATAAATGTGCAATGAAAAGTAACCGACTCGAGT
7244950 CATGTTAATTGTTGTAAGCTTATTAGAAAG
66 CATGTTAATTGTTGTAAGCTTATTAGAAAG
* * * *
7244980 ACACATCCTTATTTAACAAGGCTAAGATACTAATAGATGTGCAATGAAAAGTAACCGATTTGAGT
1 ACACATCCGTATTTAACAAGGCTAAGATACTAATAAATGTGCAATGAAAAGTAACCGACTCGAGT
7245045 CATGTTAATTGTTGTAAGCTTATTAGAAAG
66 CATGTTAATTGTTGTAAGCTTATTAGAAAG
7245075 A
1 A
7245076 TTTAATTCTT
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
95 91 1.00
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (95 bp):
ACACATCCGTATTTAACAAGGCTAAGATACTAATAAATGTGCAATGAAAAGTAACCGACTCGAGT
CATGTTAATTGTTGTAAGCTTATTAGAAAG
Found at i:7246621 original size:27 final size:27
Alignment explanation
Indices: 7246591--7246643 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
7246581 ACTATCTCAT
7246591 AATTCAAGTATATCATTAAAACATACC
1 AATTCAAGTATATCATTAAAACATACC
*
7246618 AATTCAAGTATATGATTAAAACATAC
1 AATTCAAGTATATCATTAAAACATAC
7246644 ACTTTACATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.49, C:0.15, G:0.06, T:0.30
Consensus pattern (27 bp):
AATTCAAGTATATCATTAAAACATACC
Found at i:7252868 original size:29 final size:29
Alignment explanation
Indices: 7252826--7252887 Score: 115
Period size: 29 Copynumber: 2.1 Consensus size: 29
7252816 CCAAAAAGGG
*
7252826 TTCTTGAGGCTTAGAATCCGTACTTAGCC
1 TTCTTAAGGCTTAGAATCCGTACTTAGCC
7252855 TTCTTAAGGCTTAGAATCCGTACTTAGCC
1 TTCTTAAGGCTTAGAATCCGTACTTAGCC
7252884 TTCT
1 TTCT
7252888 CAACGAGTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (29 bp):
TTCTTAAGGCTTAGAATCCGTACTTAGCC
Found at i:7265751 original size:202 final size:202
Alignment explanation
Indices: 7265405--7266012 Score: 1171
Period size: 202 Copynumber: 3.0 Consensus size: 202
7265395 TAAGTTGTTG
*
7265405 AATTTCCGATTTTTGCTAATTATTTACATATAAATCATTGAACTGTTAATTTCTATGTCAACTTT
1 AATTTCCGATTTTTGCTAATTATTTGCATATAAATCATTGAACTGTTAATTTCTATGTCAACTTT
7265470 TTAACAGTAAGGTTTAGCAATATTCTTTAATTGGACATTTCCGTAAAGCATAAGGATCAAATTTT
66 TTAACAGTAAGGTTTAGCAATATTCTTTAATTGGACATTTCCGTAAAGCATAAGGATCAAATTTT
*
7265535 GACAAATTAAAGTAGATGGGCTAACATATTAGTTTTTGTAAAGTAGAGGGATGGAATTCATAATT
131 GACAAATTAAAGTAGAGGGGCTAACATATTAGTTTTTGTAAAGTAGAGGGATGGAATTCATAATT
7265600 AAACCTA
196 AAACCTA
7265607 AATTTCCGATTTTTGCTAATTATTTGCATATAAATCATTGAACTGTTAATTTCTATGTCAACTTT
1 AATTTCCGATTTTTGCTAATTATTTGCATATAAATCATTGAACTGTTAATTTCTATGTCAACTTT
7265672 TTAACAGTAAGGTTTAGCAATATTCTTTAATTGGACATTTCCGTAAAGCATAAGGATCAAATTTT
66 TTAACAGTAAGGTTTAGCAATATTCTTTAATTGGACATTTCCGTAAAGCATAAGGATCAAATTTT
*
7265737 GACAAATTAAAGTAGAGGGGCTAACATATTAGTTTTTGTAAAGTAGAGGGACGGAATTCATAATT
131 GACAAATTAAAGTAGAGGGGCTAACATATTAGTTTTTGTAAAGTAGAGGGATGGAATTCATAATT
7265802 AAACCTA
196 AAACCTA
7265809 AATTTCCGATTTTTGCTAATTATTTGCATATAAATCATTGAACTGTTAATTTCTATGTCAACTTT
1 AATTTCCGATTTTTGCTAATTATTTGCATATAAATCATTGAACTGTTAATTTCTATGTCAACTTT
*
7265874 TTAACAGTAAGGTTTAGCAATATTCTTTAATTGGACATTTCCGTAAAGTATAAGGATCAAATTTT
66 TTAACAGTAAGGTTTAGCAATATTCTTTAATTGGACATTTCCGTAAAGCATAAGGATCAAATTTT
*
7265939 GACAAATTAAAGTAGAGGGGCTAACATATTAGTTTTTGTAAAGTAGAGGGATGGAAATCATAATT
131 GACAAATTAAAGTAGAGGGGCTAACATATTAGTTTTTGTAAAGTAGAGGGATGGAATTCATAATT
7266004 AAACCTA
196 AAACCTA
7266011 AA
1 AA
7266013 AAAGGTAATG
Statistics
Matches: 400, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
202 400 1.00
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (202 bp):
AATTTCCGATTTTTGCTAATTATTTGCATATAAATCATTGAACTGTTAATTTCTATGTCAACTTT
TTAACAGTAAGGTTTAGCAATATTCTTTAATTGGACATTTCCGTAAAGCATAAGGATCAAATTTT
GACAAATTAAAGTAGAGGGGCTAACATATTAGTTTTTGTAAAGTAGAGGGATGGAATTCATAATT
AAACCTA
Found at i:7271697 original size:52 final size:51
Alignment explanation
Indices: 7271620--7271719 Score: 182
Period size: 52 Copynumber: 1.9 Consensus size: 51
7271610 AGAGAGTGAG
7271620 AGAGAGAACGACACACAGCCTAAATAAATCAACCAATTCATAGGTGCTCGC
1 AGAGAGAACGACACACAGCCTAAATAAATCAACCAATTCATAGGTGCTCGC
*
7271671 AGAGAGAATGACACCACAGCCTAAATAAATCAACCAATTCATAGGTGCT
1 AGAGAGAACGACA-CACAGCCTAAATAAATCAACCAATTCATAGGTGCT
7271720 TGCATCCTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
51 12 0.26
52 35 0.74
ACGTcount: A:0.42, C:0.24, G:0.17, T:0.17
Consensus pattern (51 bp):
AGAGAGAACGACACACAGCCTAAATAAATCAACCAATTCATAGGTGCTCGC
Found at i:7278613 original size:27 final size:29
Alignment explanation
Indices: 7278576--7278642 Score: 71
Period size: 32 Copynumber: 2.2 Consensus size: 29
7278566 TGTTTTACAT
* *
7278576 TATTTTCTTTTTTTTCGTATTTTATTATAG
1 TATTTT-TTTTGTTACGTATTTTATTATAG
*
7278606 TATTTTTTTTGTTCAAACGTATTTTATTATTG
1 TATTTTTTTTGTT---ACGTATTTTATTATAG
7278638 TATTT
1 TATTT
7278643 CATATTATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
29 6 0.19
30 6 0.19
32 19 0.61
ACGTcount: A:0.19, C:0.06, G:0.07, T:0.67
Consensus pattern (29 bp):
TATTTTTTTTGTTACGTATTTTATTATAG
Found at i:7281056 original size:35 final size:35
Alignment explanation
Indices: 7280995--7281061 Score: 84
Period size: 35 Copynumber: 1.9 Consensus size: 35
7280985 GAAGAAGGAT
*
7280995 AAAATACAAAAATATGTATATGTGTATATATTTAC
1 AAAATACAAAAATATGTATATATGTATATATTTAC
*
7281030 AAAATA-AAAAA-ATGTATAAGTATGTATGTATT
1 AAAATACAAAAATATGTAT-A-TATGTATATATT
7281062 GGAAAATCGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 6 0.21
34 6 0.21
35 16 0.57
ACGTcount: A:0.51, C:0.03, G:0.10, T:0.36
Consensus pattern (35 bp):
AAAATACAAAAATATGTATATATGTATATATTTAC
Found at i:7281514 original size:3 final size:3
Alignment explanation
Indices: 7281480--7281541 Score: 63
Period size: 3 Copynumber: 20.3 Consensus size: 3
7281470 GTAGAGATAG
* * * *
7281480 TAA TAG TAA TAA TGA TAA TATT TAA T-A TAA TAA TAA TGA TAA TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA
7281525 TAAA TAA TAA TAA TAA T
1 T-AA TAA TAA TAA TAA T
7281542 TTAAAAAACA
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
2 2 0.04
3 41 0.85
4 5 0.10
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (3 bp):
TAA
Done.