Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 25 of 207
Found at i:7281518 original size:24 final size:25
Alignment explanation
Indices: 7281480--7281541 Score: 90
Period size: 24 Copynumber: 2.5 Consensus size: 25
7281470 GTAGAGATAG
* * *
7281480 TAATAGTAATAATGATAATATTTAA
1 TAATAATAATAATGATAATAATAAA
7281505 T-ATAATAATAATGATAATAATAAA
1 TAATAATAATAATGATAATAATAAA
7281529 TAATAATAATAAT
1 TAATAATAATAAT
7281542 TTAAAAAACA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 21 0.64
25 12 0.36
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (25 bp):
TAATAATAATAATGATAATAATAAA
Found at i:7281532 original size:19 final size:20
Alignment explanation
Indices: 7281480--7281541 Score: 72
Period size: 19 Copynumber: 3.0 Consensus size: 20
7281470 GTAGAGATAG
* *
7281480 TAATAGTAATAATGATAATATT
1 TAATA-TAATAATAATAATA-A
*
7281502 TAATATAATAATAATGATAA
1 TAATATAATAATAATAATAA
7281522 TAATA-AATAATAATAATAA
1 TAATATAATAATAATAATAA
7281541 T
1 T
7281542 TTAAAAAACA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
19 14 0.39
20 5 0.14
21 12 0.33
22 5 0.14
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (20 bp):
TAATATAATAATAATAATAA
Found at i:7289658 original size:17 final size:17
Alignment explanation
Indices: 7289623--7289659 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
7289613 ATATATGTTC
*
7289623 TATTGTTGGAATTAAAT
1 TATTGTTGGAAATAAAT
*
7289640 TATTGTTGGAAATATAT
1 TATTGTTGGAAATAAAT
7289657 TAT
1 TAT
7289660 CGAATTTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (17 bp):
TATTGTTGGAAATAAAT
Found at i:7295399 original size:20 final size:20
Alignment explanation
Indices: 7295370--7295432 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
7295360 AATAAAAAAT
*
7295370 AATTATGATTTTAATAATTA
1 AATTAAGATTTTAATAATTA
7295390 AATTAAGATTTTCAAATAA--A
1 AATTAAGATTTT--AATAATTA
* *
7295410 AATTAAGAATTAAAT-ATTA
1 AATTAAGATTTTAATAATTA
7295429 AATT
1 AATT
7295433 TTTTCTTTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
17 1 0.03
18 3 0.08
19 5 0.14
20 22 0.61
22 5 0.14
ACGTcount: A:0.52, C:0.02, G:0.05, T:0.41
Consensus pattern (20 bp):
AATTAAGATTTTAATAATTA
Found at i:7298244 original size:15 final size:15
Alignment explanation
Indices: 7298208--7298245 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
7298198 TTTTGTTTTT
7298208 TTTTTTCTATTTCAA
1 TTTTTTCTATTTCAA
*
7298223 TTGTTTCT-TTTCAAA
1 TTTTTTCTATTTC-AA
7298238 TTTTTTCT
1 TTTTTTCT
7298246 GCTTCACTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 4 0.20
15 16 0.80
ACGTcount: A:0.16, C:0.13, G:0.03, T:0.68
Consensus pattern (15 bp):
TTTTTTCTATTTCAA
Found at i:7298328 original size:19 final size:19
Alignment explanation
Indices: 7298293--7298331 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
7298283 CCCATTAAAA
7298293 AATATTATATTTCTTCATG
1 AATATTATATTTCTTCATG
7298312 AATACTTATATTT-TTCATG
1 AATA-TTATATTTCTTCATG
7298331 A
1 A
7298332 GTAATTCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.33, C:0.10, G:0.05, T:0.51
Consensus pattern (19 bp):
AATATTATATTTCTTCATG
Found at i:7299249 original size:6 final size:6
Alignment explanation
Indices: 7299219--7299252 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
7299209 GCCTCTGAAC
* *
7299219 CAAAAA AAAAAA AAAAAA CAAAAA CAAAAA CAAA
1 CAAAAA CAAAAA CAAAAA CAAAAA CAAAAA CAAA
7299253 CAGAAATTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (6 bp):
CAAAAA
Found at i:7307423 original size:28 final size:28
Alignment explanation
Indices: 7307383--7307439 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
7307373 TTCACGGTTG
7307383 AGTTGACTGAATCAACAATGATCCCTGA
1 AGTTGACTGAATCAACAATGATCCCTGA
7307411 AGTTGACTGAATCAACAATGATCCCTGA
1 AGTTGACTGAATCAACAATGATCCCTGA
7307439 A
1 A
7307440 ACCCTGATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.25
Consensus pattern (28 bp):
AGTTGACTGAATCAACAATGATCCCTGA
Found at i:7309586 original size:28 final size:28
Alignment explanation
Indices: 7309566--7309620 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
7309556 TATTTTTTGT
7309566 AATAATAGTAATTTAATTTATTTATTTAC
1 AATAATAGTAA-TTAATTTATTTATTTAC
* *
7309595 AATAATGGTAATTAATATA-TTATTTA
1 AATAATAGTAATTAATTTATTTATTTA
7309621 TAGTAGTGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 7 0.29
28 7 0.29
29 10 0.42
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (28 bp):
AATAATAGTAATTAATTTATTTATTTAC
Found at i:7314613 original size:7 final size:7
Alignment explanation
Indices: 7314601--7314641 Score: 82
Period size: 7 Copynumber: 5.9 Consensus size: 7
7314591 TGTATTTGTT
7314601 TGAATTA
1 TGAATTA
7314608 TGAATTA
1 TGAATTA
7314615 TGAATTA
1 TGAATTA
7314622 TGAATTA
1 TGAATTA
7314629 TGAATTA
1 TGAATTA
7314636 TGAATT
1 TGAATT
7314642 GTGGATTGTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (7 bp):
TGAATTA
Found at i:7314831 original size:20 final size:21
Alignment explanation
Indices: 7314806--7314853 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
7314796 TTGTAAGGGA
*
7314806 TTGCACTTCGGTGCCACT-AT
1 TTGCACTTCGGTGCCACTGAC
7314826 TTGCACTTCGGTGCCACTGAC
1 TTGCACTTCGGTGCCACTGAC
7314847 TTGCACT
1 TTGCACT
7314854 ACGATACCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 18 0.69
21 8 0.31
ACGTcount: A:0.15, C:0.31, G:0.21, T:0.33
Consensus pattern (21 bp):
TTGCACTTCGGTGCCACTGAC
Found at i:7314903 original size:22 final size:22
Alignment explanation
Indices: 7314860--7314955 Score: 102
Period size: 22 Copynumber: 4.3 Consensus size: 22
7314850 CACTACGATA
* * *
7314860 CCTATTGTTCAGCATTTCGGTG
1 CCTACTGTTCAACACTTCGGTG
* *
7314882 CCCACTGTCCAACACTTCGGTG
1 CCTACTGTTCAACACTTCGGTG
* *
7314904 CCTACTATTCAACACTTTGGTG
1 CCTACTGTTCAACACTTCGGTG
* *
7314926 CCTATTGTTTAAGCACTTCGGTG
1 CCTACTGTTCAA-CACTTCGGTG
7314949 CCTACTG
1 CCTACTG
7314956 GTGTGGTGTA
Statistics
Matches: 59, Mismatches: 14, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
22 44 0.75
23 15 0.25
ACGTcount: A:0.18, C:0.29, G:0.19, T:0.34
Consensus pattern (22 bp):
CCTACTGTTCAACACTTCGGTG
Found at i:7315768 original size:11 final size:11
Alignment explanation
Indices: 7315754--7315779 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7315744 TATTTTTTAA
7315754 TTTTAAAATAC
1 TTTTAAAATAC
7315765 TTTTAAAATAC
1 TTTTAAAATAC
7315776 TTTT
1 TTTT
7315780 TTTAAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (11 bp):
TTTTAAAATAC
Found at i:7315774 original size:42 final size:43
Alignment explanation
Indices: 7315728--7315848 Score: 139
Period size: 42 Copynumber: 3.0 Consensus size: 43
7315718 CGAATATAAT
7315728 AAATATTTTTTATTTTTA-TTTTTTAATTTTAAAATACTTTTA
1 AAATATTTTTTATTTTTATTTTTTTAATTTTAAAATACTTTTA
* *** *
7315770 AAATACTTTTT-TTAAAATTTTTTTAATTTTAAAATATTTTTA
1 AAATATTTTTTATTTTTATTTTTTTAATTTTAAAATACTTTTA
*
7315812 AAATA-----TATTTTTATTTTTTTAATTTTAAAATAATTTT
1 AAATATTTTTTATTTTTATTTTTTTAATTTTAAAATACTTTT
7315849 TTAATAAAAT
Statistics
Matches: 68, Mismatches: 9, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
37 1 0.01
38 26 0.38
41 3 0.04
42 38 0.56
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (43 bp):
AAATATTTTTTATTTTTATTTTTTTAATTTTAAAATACTTTTA
Found at i:7315808 original size:19 final size:19
Alignment explanation
Indices: 7315786--7315853 Score: 59
Period size: 19 Copynumber: 3.6 Consensus size: 19
7315776 TTTTTTTAAA
7315786 ATTTTTTTAATTTTAAAAT
1 ATTTTTTTAATTTTAAAAT
** **
7315805 ATTTTTAAAATATATT--TTT
1 ATTTTTTTAAT-T-TTAAAAT
7315824 ATTTTTTTAATTTTAAAAT
1 ATTTTTTTAATTTTAAAAT
*
7315843 AATTTTTTAAT
1 ATTTTTTTAAT
7315854 AAAATTTTGG
Statistics
Matches: 36, Mismatches: 9, Indels: 8
0.68 0.17 0.15
Matches are distributed among these distances:
17 2 0.06
18 1 0.03
19 30 0.83
20 1 0.03
21 2 0.06
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (19 bp):
ATTTTTTTAATTTTAAAAT
Found at i:7318394 original size:24 final size:22
Alignment explanation
Indices: 7318361--7318420 Score: 57
Period size: 23 Copynumber: 2.6 Consensus size: 22
7318351 TTGAATTTTT
* *
7318361 TTTAAATATAAATCTTTCAAAAA
1 TTTAATTATAAATATTT-AAAAA
* *
7318384 TTTATATTATATATATTTAAAAT
1 TTTA-ATTATAAATATTTAAAAA
*
7318407 TTTAATCATAAATA
1 TTTAATTATAAATA
7318421 AGATAAATAT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
22 8 0.27
23 12 0.40
24 10 0.33
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.47
Consensus pattern (22 bp):
TTTAATTATAAATATTTAAAAA
Found at i:7327600 original size:13 final size:13
Alignment explanation
Indices: 7327584--7327610 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7327574 AAATAATTTT
7327584 AAATTTTTTTTAA
1 AAATTTTTTTTAA
7327597 AAATTTTTTTTAA
1 AAATTTTTTTTAA
7327610 A
1 A
7327611 CCGTAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
AAATTTTTTTTAA
Found at i:7329772 original size:15 final size:15
Alignment explanation
Indices: 7329754--7329806 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
7329744 AATTCGTTTT
*
7329754 TTATTATTACCATTA
1 TTATTATTACTATTA
*
7329769 TTATCATATTATTTATTA
1 TTAT--TATTA-CTATTA
*
7329787 TCATTATTACTATTA
1 TTATTATTACTATTA
7329802 TTATT
1 TTATT
7329807 TCTATATTCA
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
15 13 0.43
16 5 0.17
17 5 0.17
18 7 0.23
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.58
Consensus pattern (15 bp):
TTATTATTACTATTA
Found at i:7329806 original size:12 final size:12
Alignment explanation
Indices: 7329754--7329811 Score: 50
Period size: 12 Copynumber: 5.1 Consensus size: 12
7329744 AATTCGTTTT
*
7329754 TTATTATTACCA
1 TTATTATTACTA
*
7329766 TTATTATCA-TA
1 TTATTATTACTA
*
7329777 TTA-T-TTATTA
1 TTATTATTACTA
*
7329787 TCATTATTACTA
1 TTATTATTACTA
*
7329799 TTATTATTTCTA
1 TTATTATTACTA
7329811 T
1 T
7329812 ATTCATATGC
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
9 2 0.06
10 5 0.14
11 5 0.14
12 24 0.67
ACGTcount: A:0.31, C:0.10, G:0.00, T:0.59
Consensus pattern (12 bp):
TTATTATTACTA
Found at i:7340631 original size:44 final size:44
Alignment explanation
Indices: 7340481--7340899 Score: 294
Period size: 45 Copynumber: 9.4 Consensus size: 44
7340471 AGCAGGTTGA
* * ** *
7340481 AAAGATGACAGATCTTGTCTTCATGTATTGACGTGAAATAGATC
1 AAAGATAACAGATCTTGTCTTCATGTACTGGTGTGAAGTAGATC
*** * *
7340525 GAAAGA-AAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGAAGATC
1 -AAAGATAA-CAGATCTTGTCTTCATGTACTGGT-GTGAAGTAGATC
* *
7340571 GAAGA-AAGC-GTATCTTGTCTTCATGTACCGGTGTGAAGTAGATC
1 AAAGATAA-CAG-ATCTTGTCTTCATGTACTGGTGTGAAGTAGATC
* *** *
7340615 AAATATAACAGATCTTGTCTTCCCATACTGGTG-GCAAAGGAGATC
1 AAAGATAACAGATCTTGTCTTCATGTACTGGTGTG--AAGTAGATC
* * * *
7340660 GAAGA-AAGCGGATCTTGTCTTCATGTACCGGCGTGAAGTAGATC
1 AAAGATAA-CAGATCTTGTCTTCATGTACTGGTGTGAAGTAGATC
* * *** * *
7340704 AAATATAACAGATTTTGTCTTCCCATACTGGTGGCGAAGGAGATC
1 AAAGATAACAGATCTTGTCTTCATGTACTGGT-GTGAAGTAGATC
* * * *
7340749 GAAA-A-AAGCGGATCTTGTCTTTATGTACCGGCGTGAAGTAGATC
1 -AAAGATAA-CAGATCTTGTCTTCATGTACTGGTGTGAAGTAGATC
* *** *
7340793 AAATATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATC
1 AAAGATAACAGATCTTGTCTTCATGTACTGGT-GTGAAGTAGATC
* * * * *
7340838 GAAGAAAATAAATCTTGTCTTCATGTACTGGCGTGAAGTAGATC
1 AAAGATAACAGATCTTGTCTTCATGTACTGGTGTGAAGTAGATC
*
7340882 AAAGACAACAGATCTTGT
1 AAAGATAACAGATCTTGT
7340900 TTCCCCATAC
Statistics
Matches: 282, Mismatches: 76, Indels: 33
0.72 0.19 0.08
Matches are distributed among these distances:
43 4 0.01
44 119 0.42
45 146 0.52
46 13 0.05
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (44 bp):
AAAGATAACAGATCTTGTCTTCATGTACTGGTGTGAAGTAGATC
Found at i:7340649 original size:89 final size:89
Alignment explanation
Indices: 7340491--7340915 Score: 620
Period size: 89 Copynumber: 4.8 Consensus size: 89
7340481 AAAGATGACA
** * * *
7340491 GATCTTGTCTTCATGTATTGACGTGAAATAGATCGAAAGA-AAGCAGATCTTGTCTTCCCATACT
1 GATCTTGTCTTCATGTACCGGCGTGAAGTAGATC-AAATATAA-CAGATCTTGTCTTCCCATACT
*
7340555 GGTGGCGAAGAAGATCGAAGAAAGCG
64 GGTGGCGAAGGAGATCGAAGAAAGCG
* *
7340581 TATCTTGTCTTCATGTACCGGTGTGAAGTAGATCAAATATAACAGATCTTGTCTTCCCATACTGG
1 GATCTTGTCTTCATGTACCGGCGTGAAGTAGATCAAATATAACAGATCTTGTCTTCCCATACTGG
*
7340646 TGGCAAAGGAGATCGAAGAAAGCG
66 TGGCGAAGGAGATCGAAGAAAGCG
*
7340670 GATCTTGTCTTCATGTACCGGCGTGAAGTAGATCAAATATAACAGATTTTGTCTTCCCATACTGG
1 GATCTTGTCTTCATGTACCGGCGTGAAGTAGATCAAATATAACAGATCTTGTCTTCCCATACTGG
*
7340735 TGGCGAAGGAGATCGAAAAAAGCG
66 TGGCGAAGGAGATCGAAGAAAGCG
*
7340759 GATCTTGTCTTTATGTACCGGCGTGAAGTAGATCAAATATAACAGATCTTGTCTTCCCATACTGG
1 GATCTTGTCTTCATGTACCGGCGTGAAGTAGATCAAATATAACAGATCTTGTCTTCCCATACTGG
* ***
7340824 TGGCGAAGTAGATCGAAGAAAATA
66 TGGCGAAGGAGATCGAAGAAAGCG
* * * * *
7340848 AATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACAGATCTTGT-TTCCCCATACTA
1 GATCTTGTCTTCATGTACCGGCGTGAAGTAGATCAAATATAACAGATCTTGTCTT-CCCATACTG
7340912 GTGG
65 GTGG
7340916 TGGAGCAGAT
Statistics
Matches: 306, Mismatches: 27, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
88 2 0.01
89 274 0.90
90 30 0.10
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (89 bp):
GATCTTGTCTTCATGTACCGGCGTGAAGTAGATCAAATATAACAGATCTTGTCTTCCCATACTGG
TGGCGAAGGAGATCGAAGAAAGCG
Found at i:7341158 original size:132 final size:132
Alignment explanation
Indices: 7340915--7341167 Score: 323
Period size: 132 Copynumber: 1.9 Consensus size: 132
7340905 CATACTAGTG
* *
7340915 GTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGAGGTTGCAGCGGAGTATATTGAAGCCAG
1 GTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGAGGTTACAACGGAGTATATTGAAGCCAG
* * * *
7340980 TAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAA
66 TAATTCTATCTCCCTGGGCAGCAATGGAATAGATTGAAAATCACAGATCTCATCTCCCTAAGCAA
7341045 TA
131 TA
** *
7341047 GTGGAGCAGATCAAAGATGATGGATTTTACCTCCCTGAGGTTACAATGGAGTATATTGAAGCCAG
1 GTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGAGGTTACAACGGAGTATATTGAAGCCAG
* ** * * *
7341112 T-ATTCCTATCTCCTTGAAGTTA-TAATGGAGTGGATT-AAAATCACAGATCTCATCTC
66 TAATT-CTATCTCCCTG--GGCAGCAATGGAATAGATTGAAAATCACAGATCTCATCTC
7341168 TCTGAAGTTG
Statistics
Matches: 103, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
131 3 0.03
132 88 0.85
133 10 0.10
134 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (132 bp):
GTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGAGGTTACAACGGAGTATATTGAAGCCAG
TAATTCTATCTCCCTGGGCAGCAATGGAATAGATTGAAAATCACAGATCTCATCTCCCTAAGCAA
TA
Found at i:7341977 original size:15 final size:15
Alignment explanation
Indices: 7341950--7341978 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7341940 CATTTATACA
7341950 TATATATTATTTTTT
1 TATATATTATTTTTT
7341965 TATAT-TTATTTTTT
1 TATATATTATTTTTT
7341979 CGCTTAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (15 bp):
TATATATTATTTTTT
Found at i:7342532 original size:3 final size:3
Alignment explanation
Indices: 7342526--7342572 Score: 51
Period size: 3 Copynumber: 15.7 Consensus size: 3
7342516 AATTCATTTT
** *
7342526 TTA TTA TTA CCA TTA TTA TTA -TA TTA TTTA TTA TCA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
7342571 TT
1 TT
7342573 TCTATATTCA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
2 2 0.06
3 31 0.86
4 3 0.08
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:7342571 original size:12 final size:12
Alignment explanation
Indices: 7342526--7342571 Score: 67
Period size: 12 Copynumber: 3.8 Consensus size: 12
7342516 AATTCATTTT
*
7342526 TTATTATTACCA
1 TTATTATTATCA
7342538 TTATTATTAT-A
1 TTATTATTATCA
7342549 TTATTTATTATCA
1 TTA-TTATTATCA
7342562 TTATTATTAT
1 TTATTATTAT
7342572 TTCTATATTC
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
11 4 0.13
12 23 0.74
13 4 0.13
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.61
Consensus pattern (12 bp):
TTATTATTATCA
Found at i:7342583 original size:21 final size:19
Alignment explanation
Indices: 7342537--7342583 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
7342527 TATTATTACC
7342537 ATTATT-ATTATATTATTT
1 ATTATTCATTATATTATTT
7342555 ATTA-TCATTATTATTATTT
1 ATTATTCATTA-TATTATTT
*
7342574 CTATATTCAT
1 AT-TATTCAT
7342584 ATGCATAGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
17 1 0.04
18 8 0.33
19 9 0.38
20 2 0.08
21 4 0.17
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (19 bp):
ATTATTCATTATATTATTT
Found at i:7343505 original size:4 final size:4
Alignment explanation
Indices: 7343496--7343592 Score: 79
Period size: 4 Copynumber: 22.8 Consensus size: 4
7343486 ATACAACAAC
* * ** *
7343496 AAAT AAAT AAAT AAAT AAACT AAA- ACAT AAAA AAAT GGAT ATAT AAAT
1 AAAT AAAT AAAT AAAT AAA-T AAAT AAAT AAAT AAAT AAAT AAAT AAAT
7343544 AAAT AAAT AAAT AAAT AAAT GAACAT AAAGT AAAAT AAAAT AAAAT AAA
1 AAAT AAAT AAAT AAAT AAAT -AA-AT AAA-T -AAAT -AAAT -AAAT AAA
7343593 ATAATAATAA
Statistics
Matches: 78, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
3 2 0.03
4 51 0.65
5 20 0.26
6 5 0.06
ACGTcount: A:0.71, C:0.03, G:0.04, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:7343581 original size:10 final size:9
Alignment explanation
Indices: 7343496--7343624 Score: 67
Period size: 8 Copynumber: 14.3 Consensus size: 9
7343486 ATACAACAAC
7343496 AAATAAAT-
1 AAATAAATA
7343504 AAATAAATA
1 AAATAAATA
*
7343513 AACT-AA-A
1 AAATAAATA
*
7343520 ACATAAA-A
1 AAATAAATA
*
7343528 AAATGGATATA
1 AAAT--AAATA
7343539 TAAATAAAT-
1 -AAATAAATA
7343548 AAATAAAT-
1 AAATAAATA
7343556 AAATAAATGA
1 AAATAAAT-A
*
7343566 ACATAAAGTA
1 AAATAAA-TA
7343576 AAATAAAATA
1 AAAT-AAATA
7343586 AAATAAA-A
1 AAATAAATA
*
7343594 TAAT-AATA
1 AAATAAATA
*
7343602 ACAATAAAGGA
1 A-AATAAA-TA
*
7343613 AAATAGATA
1 AAATAAATA
7343622 AAA
1 AAA
7343625 ATCATAAAAT
Statistics
Matches: 94, Mismatches: 13, Indels: 27
0.70 0.10 0.20
Matches are distributed among these distances:
7 5 0.05
8 37 0.39
9 13 0.14
10 28 0.30
11 7 0.07
12 4 0.04
ACGTcount: A:0.71, C:0.03, G:0.05, T:0.21
Consensus pattern (9 bp):
AAATAAATA
Found at i:7343607 original size:6 final size:5
Alignment explanation
Indices: 7343540--7343609 Score: 60
Period size: 5 Copynumber: 14.4 Consensus size: 5
7343530 ATGGATATAT
* *
7343540 AAAT- AAAT- AAAT- AAAT- AAAT- AAATGA ACATA AAGTA AAATA AAATA
1 AAATA AAATA AAATA AAATA AAATA AAAT-A AAATA AAATA AAATA AAATA
7343586 AAATA AAATA ATAATA ACAATA AA
1 AAATA AAATA A-AATA A-AATA AA
7343610 GGAAAATAGA
Statistics
Matches: 58, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
4 20 0.34
5 25 0.43
6 13 0.22
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.21
Consensus pattern (5 bp):
AAATA
Found at i:7343609 original size:37 final size:37
Alignment explanation
Indices: 7343540--7343617 Score: 92
Period size: 37 Copynumber: 2.1 Consensus size: 37
7343530 ATGGATATAT
*
7343540 AAAT-AAATAAATAAATAAATAAATGAACATAAAGTA
1 AAATAAAATAAATAAATAAATAAATGAACATAAAGGA
7343576 AAATAAAATAAAATAAA-ATAAT-AAT-AACAATAAAGGA
1 AAATAAAAT-AAATAAATA-AATAAATGAAC-ATAAAGGA
7343613 AAATA
1 AAATA
7343618 GATAAAAATC
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
36 7 0.19
37 20 0.54
38 10 0.27
ACGTcount: A:0.72, C:0.03, G:0.05, T:0.21
Consensus pattern (37 bp):
AAATAAAATAAATAAATAAATAAATGAACATAAAGGA
Found at i:7345569 original size:44 final size:43
Alignment explanation
Indices: 7345491--7345703 Score: 155
Period size: 44 Copynumber: 4.9 Consensus size: 43
7345481 TTGTGGTAGA
* * * *
7345491 TTTAATCCGAC-CTACTGCAACTTCAAAGG-TATAGGATTCATCAT
1 TTTAATCCG-CTCCACTGCAACTTC-AGGGAGATAGGATT-ATGAT
* *
7345535 TTTAATCCGCTCCATTGCAACTTCAGGGAGATAGGATTTGTGAT
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGA-TTATGAT
* * * *
7345579 TCTTCAATCTGCTCCACTGGAACTTCAGGGAGATAAGATT-GGA-
1 T-TT-AATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATGAT
** * * * * * *
7345622 TACAATCTGCTCTACTGCAACTTCAGAGAGATAAGACTTGTGGT
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGA-TTATGAT
* *
7345666 TTTAATCCACTCTACTGCAACTTCAGGGAGATAGGATT
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATT
7345704 GGCTTCTTCA
Statistics
Matches: 137, Mismatches: 24, Indels: 17
0.77 0.13 0.10
Matches are distributed among these distances:
41 30 0.22
42 2 0.01
43 8 0.06
44 62 0.45
45 6 0.04
46 29 0.21
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.31
Consensus pattern (43 bp):
TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATGAT
Found at i:7345603 original size:46 final size:43
Alignment explanation
Indices: 7345533--7345715 Score: 167
Period size: 44 Copynumber: 4.2 Consensus size: 43
7345523 AGGATTCATC
* *
7345533 ATTTT-AATCCGCTCCATTGCAACTTCAGGGAGATAGGATTTGTG
1 ATTTTCAATCCGCTCCACTGCAACTTCAGGGAGATAAGA-TTG-G
* *
7345577 ATTCTTCAATCTGCTCCACTGGAACTTCAGGGAGATAAGATTGG
1 ATT-TTCAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTGG
* * * *
7345621 A--TACAATCTGCTCTACTGCAACTTCAGAGAGATAAGACTTGTG
1 ATTTTCAATCCGCTCCACTGCAACTTCAGGGAGATAAGA-TTG-G
* * * *
7345664 GTTTT-AATCCACTCTACTGCAACTTCAGGGAGATAGGATTGG
1 ATTTTCAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTGG
*
7345706 CTTCTTCAAT
1 ATT-TTCAAT
7345716 TTTTTTAACT
Statistics
Matches: 116, Mismatches: 15, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
41 32 0.28
42 6 0.05
43 6 0.05
44 37 0.32
45 6 0.05
46 29 0.25
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (43 bp):
ATTTTCAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTGG
Found at i:7345824 original size:25 final size:25
Alignment explanation
Indices: 7345792--7345841 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
7345782 CTTAGGGTGT
* *
7345792 AAGATTCACTGTTGTAGCTTTAATC
1 AAGATTCACCGATGTAGCTTTAATC
*
7345817 AAGATTCACCGATGTGGCTTTAATC
1 AAGATTCACCGATGTAGCTTTAATC
7345842 TTTTTAACTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (25 bp):
AAGATTCACCGATGTAGCTTTAATC
Found at i:7345939 original size:125 final size:125
Alignment explanation
Indices: 7345717--7346186 Score: 807
Period size: 125 Copynumber: 3.8 Consensus size: 125
7345707 TTCTTCAATT
*** *
7345717 TTTTTAACTGCAATGTCAGG-GAAGTGAGATTTACCAATTTGGCTTTAATCTATTCCACTGCATC
1 TTTTTAACTGCAATGTC-GGAGAAACAAGATTCACCAATTTGGCTTTAATCTATTCCACTGCATC
* * * *
7345781 GCTTAGGGTGTAAGATTCACTGTTGTAGCTTTAATCAAGATTCACCGATGTGGCTTTAATC
65 ACTTGGGGCGTAAGATTCGCTGTTGTAGCTTTAATCAAGATTCACCGATGTGGCTTTAATC
*
7345842 TTTTTAACTGCAATGTCGGAGAAACAAGATTCACCAATTTGGCTTTAATCTATTCCACTGCACCA
1 TTTTTAACTGCAATGTCGGAGAAACAAGATTCACCAATTTGGCTTTAATCTATTCCACTGCATCA
*
7345907 CTTGGGTCGTAAGATTCGCTGTTGTAGCTTTAATCAAGATTCACCGATGTGGCTTTAATC
66 CTTGGGGCGTAAGATTCGCTGTTGTAGCTTTAATCAAGATTCACCGATGTGGCTTTAATC
*
7345967 TTTTTAACTGCAATGTCGGAGAAACAAAATTCACCAATTTGGCTTTAATCTATTCCACTGCATCA
1 TTTTTAACTGCAATGTCGGAGAAACAAGATTCACCAATTTGGCTTTAATCTATTCCACTGCATCA
7346032 CTTGGGGCGTAAGATTCGCTGTTGTAGCTTTAATCAAGATTCACCGATGTGGCTTTAATC
66 CTTGGGGCGTAAGATTCGCTGTTGTAGCTTTAATCAAGATTCACCGATGTGGCTTTAATC
* *
7346092 TTTTCAACTGCAATGTCGGAGAAACAAGATTCACCAATTTGGCTTTAATCTATTCCACTGCATCG
1 TTTTTAACTGCAATGTCGGAGAAACAAGATTCACCAATTTGGCTTTAATCTATTCCACTGCATCA
7346157 CTTGGGGCGTAAGATTCGCTGTTGTAGCTT
66 CTTGGGGCGTAAGATTCGCTGTTGTAGCTT
7346187 CCATATTTTT
Statistics
Matches: 328, Mismatches: 16, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
124 2 0.01
125 326 0.99
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (125 bp):
TTTTTAACTGCAATGTCGGAGAAACAAGATTCACCAATTTGGCTTTAATCTATTCCACTGCATCA
CTTGGGGCGTAAGATTCGCTGTTGTAGCTTTAATCAAGATTCACCGATGTGGCTTTAATC
Found at i:7346250 original size:100 final size:100
Alignment explanation
Indices: 7346133--7347503 Score: 2142
Period size: 100 Copynumber: 13.7 Consensus size: 100
7346123 CACCAATTTG
* * * * *** * * * *
7346133 GCTTTAATCTATTCCACTGCATCGCTTGGGGCGTAAGATTCGCTGTTGTAGCTTCCATATTTTTA
1 GCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTCTTA
*
7346198 AATGCAATGTCAGGGAAGTAAGATCCGCTGTTGTA
66 ATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTA
* * *
7346233 GCTTCAATCTATTCCACTGCAACGCTAGGAAAGTAAGATTCGCTGTTGTAGCTTCAATCTTTTTA
1 GCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTCTTA
* *
7346298 AATGCAATGTCAGGGAAGGAAGATCCGCTGTTGTA
66 ATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTA
* *
7346333 GCTTCAATCTGTTCCACTGCAATGCTAAGAAAGTAAGATCCGCTG-T-T-GCTTCAATCTT-TTG
1 GCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTCTT-
** * *
7346394 AATTGCAATGTCAGGGAAGTAAGATTTGCCGTCGTA
65 AATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTA
* * ** * * *
7346430 GCTTCAATCTGTTTCGCTGCGTCGCCT-GGAAAGGTAAGATTCGCCGTTGTGGCTTCAATCTT-T
1 GCTTCAATCTGTTCCACTGCAACG-CTAGGAAA-GTAAGATCCGCTGTTGTAGCTTCAATCTTCT
*
7346493 TAAATTGCAATGTCAAGGAAGTAAGATCCGCTGTTGTA
64 T-AATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTA
* * *
7346531 GCTTCAATCTGTTCCACTGCAATGCTAGGAAAGTAAGATCTGCTGTTGTAGCTTCGATCTTCTTA
1 GCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTCTTA
*
7346596 ATTACAATGTCAGGGAAGTAAGATCCGCTGTTGTA
66 ATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTA
*
7346631 GCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCACTGTTGTAGCTTCAATCTTCTTA
1 GCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTCTTA
*
7346696 ATTGCAATGTCAGAGAAGTAAGATCCGCTGTTGTA
66 ATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTA
*
7346731 GCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTAGGTTCAATCTTCTTA
1 GCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTCTTA
*
7346796 ATTGCAATGTCAGTGAAGTAAGATCCGCTGTTGTA
66 ATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTA
* *
7346831 GCTTCAATCTGTTCCACTGCAACGCTAGAAAACTAAGATCCGCTGTTGTAGCTTCAATCTTCTTA
1 GCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTCTTA
7346896 ATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTA
66 ATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTA
7346931 GCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTCTTA
1 GCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTCTTA
*
7346996 ATTGCAATGTCAGGGAAGTAAGATCTGCTGTTGTA
66 ATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTA
* *
7347031 GCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTATTGTATCTTCAATCTTCTTA
1 GCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTCTTA
*
7347096 ATTACAATGTCAGGGAAGTAAGATCCGCTGTTGTA
66 ATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTA
* * *
7347131 GCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCTGCTATTGTAGCTTTAATCTTCTTA
1 GCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTCTTA
*
7347196 ATTGCAATGTCAGGGAAGTAAGATCTGCTGTTGTA
66 ATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTA
7347231 GCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTCTTA
1 GCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTCTTA
*
7347296 ATTGCAATGTCAGGGAAGTAAGATCTGCTGTTGTA
66 ATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTA
* * *
7347331 GCTTCAATCTATTCCACTGCAACGCTAGGAAAGTAAGATCCGCTATTGTATCTTCAATCTTCTTA
1 GCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTCTTA
* *
7347396 ATTGCAATGTCAGGAAAGTAAGATCCGCTATTGTA
66 ATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTA
* * *
7347431 GCTTCAATTTGTTCCACTGCAATGCTAGGAAAGTAAGTTCCGCTGTTGTAGCTTCAATCTTCTTA
1 GCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTCTTA
7347496 ATTGCAAT
66 ATTGCAAT
7347504 CTATAGTTTC
Statistics
Matches: 1178, Mismatches: 85, Indels: 16
0.92 0.07 0.01
Matches are distributed among these distances:
96 2 0.00
97 64 0.05
98 14 0.01
99 2 0.00
100 1026 0.87
101 70 0.06
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (100 bp):
GCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTCTTA
ATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTA
Found at i:7346254 original size:50 final size:50
Alignment explanation
Indices: 7346165--7347490 Score: 1306
Period size: 50 Copynumber: 26.6 Consensus size: 50
7346155 CGCTTGGGGC
* * * * * * *
7346165 GTAAGATTCGCTGTTGTAGCTTCCATATTTTTAAATGCAATGTCAGGGAA
1 GTAAGATCCGCTGTTGTAGCTTCAATCTGTTCAACTGCAATGTCAGGAAA
* * *
7346215 GTAAGATCCGCTGTTGTAGCTTCAATCTATTCCACTGCAACG-CTAGGAAA
1 GTAAGATCCGCTGTTGTAGCTTCAATCTGTTCAACTGCAATGTC-AGGAAA
* * * * *
7346265 GTAAGATTCGCTGTTGTAGCTTCAATCTTTTTAAATGCAATGTCAGGGAA
1 GTAAGATCCGCTGTTGTAGCTTCAATCTGTTCAACTGCAATGTCAGGAAA
* * *
7346315 GGAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAATG-CTAAGAAA
1 GTAAGATCCGCTGTTGTAGCTTCAATCTGTTCAACTGCAATGTC-AGGAAA
* * * *
7346365 GTAAGATCCGCTG-T-T-GCTTCAATCTTTTGAATTGCAATGTCAGGGAA
1 GTAAGATCCGCTGTTGTAGCTTCAATCTGTTCAACTGCAATGTCAGGAAA
** * * * * * *
7346412 GTAAGATTTGCCGTCGTAGCTTCAATCTGTTTC-GCTGC-GTCGCCTGGAAA
1 GTAAGATCCGCTGTTGTAGCTTCAATCTG-TTCAACTGCAAT-GTCAGGAAA
* * * * * *
7346462 GGTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAATTGCAATGTCAAGG-AA
1 -GTAAGATCCGCTGTTGTAGCTTCAATCTGTTCAACTGCAATGTC-AGGAAA
*
7346513 GTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAATG-CTAGGAAA
1 GTAAGATCCGCTGTTGTAGCTTCAATCTGTTCAACTGCAATGTC-AGGAAA
* * * * * *
7346563 GTAAGATCTGCTGTTGTAGCTTCGATCT-TCTTAATTACAATGTCAGGGAA
1 GTAAGATCCGCTGTTGTAGCTTCAATCTGT-TCAACTGCAATGTCAGGAAA
* *
7346613 GTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAACG-CTAGGAAA
1 GTAAGATCCGCTGTTGTAGCTTCAATCTGTTCAACTGCAATGTC-AGGAAA
* * *
7346663 GTAAGATCCACTGTTGTAGCTTCAATCT-TCTTAATTGCAATGTCA-GAGAA
1 GTAAGATCCGCTGTTGTAGCTTCAATCTGT-TCAACTGCAATGTCAGGA-AA
* *
7346713 GTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAACG-CTAGGAAA
1 GTAAGATCCGCTGTTGTAGCTTCAATCTGTTCAACTGCAATGTC-AGGAAA
* * *
7346763 GTAAGATCCGCTGTTGTAGGTTCAATCT-TCTTAATTGCAATGTCAGTG-AA
1 GTAAGATCCGCTGTTGTAGCTTCAATCTGT-TCAACTGCAATGTCAG-GAAA
* * *
7346813 GTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAACG-CTAGAAAA
1 GTAAGATCCGCTGTTGTAGCTTCAATCTGTTCAACTGCAATGTC-AGGAAA
* * * *
7346863 CTAAGATCCGCTGTTGTAGCTTCAATCT-TCTTAATTGCAATGTCAGGGAA
1 GTAAGATCCGCTGTTGTAGCTTCAATCTGT-TCAACTGCAATGTCAGGAAA
* *
7346913 GTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAACG-CTAGGAAA
1 GTAAGATCCGCTGTTGTAGCTTCAATCTGTTCAACTGCAATGTC-AGGAAA
* * *
7346963 GTAAGATCCGCTGTTGTAGCTTCAATCT-TCTTAATTGCAATGTCAGGGAA
1 GTAAGATCCGCTGTTGTAGCTTCAATCTGT-TCAACTGCAATGTCAGGAAA
* * *
7347013 GTAAGATCTGCTGTTGTAGCTTCAATCTGTTCCACTGCAACG-CTAGGAAA
1 GTAAGATCCGCTGTTGTAGCTTCAATCTGTTCAACTGCAATGTC-AGGAAA
* * * * * *
7347063 GTAAGATCCGCTATTGTATCTTCAATCT-TCTTAATTACAATGTCAGGGAA
1 GTAAGATCCGCTGTTGTAGCTTCAATCTGT-TCAACTGCAATGTCAGGAAA
* *
7347113 GTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAACG-CTAGGAAA
1 GTAAGATCCGCTGTTGTAGCTTCAATCTGTTCAACTGCAATGTC-AGGAAA
* * * * * *
7347163 GTAAGATCTGCTATTGTAGCTTTAATCT-TCTTAATTGCAATGTCAGGGAA
1 GTAAGATCCGCTGTTGTAGCTTCAATCTGT-TCAACTGCAATGTCAGGAAA
* * *
7347213 GTAAGATCTGCTGTTGTAGCTTCAATCTGTTCCACTGCAACG-CTAGGAAA
1 GTAAGATCCGCTGTTGTAGCTTCAATCTGTTCAACTGCAATGTC-AGGAAA
* * *
7347263 GTAAGATCCGCTGTTGTAGCTTCAATCT-TCTTAATTGCAATGTCAGGGAA
1 GTAAGATCCGCTGTTGTAGCTTCAATCTGT-TCAACTGCAATGTCAGGAAA
* * * *
7347313 GTAAGATCTGCTGTTGTAGCTTCAATCTATTCCACTGCAACG-CTAGGAAA
1 GTAAGATCCGCTGTTGTAGCTTCAATCTGTTCAACTGCAATGTC-AGGAAA
* * * *
7347363 GTAAGATCCGCTATTGTATCTTCAATCT-TCTTAATTGCAATGTCAGGAAA
1 GTAAGATCCGCTGTTGTAGCTTCAATCTGT-TCAACTGCAATGTCAGGAAA
* * *
7347413 GTAAGATCCGCTATTGTAGCTTCAATTTGTTCCACTGCAATG-CTAGGAAA
1 GTAAGATCCGCTGTTGTAGCTTCAATCTGTTCAACTGCAATGTC-AGGAAA
*
7347463 GTAAGTTCCGCTGTTGTAGCTTCAATCT
1 GTAAGATCCGCTGTTGTAGCTTCAATCT
7347491 TCTTAATTGC
Statistics
Matches: 1042, Mismatches: 180, Indels: 108
0.78 0.14 0.08
Matches are distributed among these distances:
47 34 0.03
48 2 0.00
49 29 0.03
50 918 0.88
51 56 0.05
52 3 0.00
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (50 bp):
GTAAGATCCGCTGTTGTAGCTTCAATCTGTTCAACTGCAATGTCAGGAAA
Found at i:7349948 original size:20 final size:20
Alignment explanation
Indices: 7349931--7349981 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
7349921 CTCCTTTTTT
*
7349931 CTTTTATTTTTCTATTTTGA
1 CTTTGATTTTTCTATTTTGA
*
7349951 CTTTGATTTTTTTA-TTTGA
1 CTTTGATTTTTCTATTTTGA
*
7349970 TTTTTGATTTTT
1 -CTTTGATTTTT
7349982 TGATTTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 5 0.19
20 22 0.81
ACGTcount: A:0.14, C:0.06, G:0.08, T:0.73
Consensus pattern (20 bp):
CTTTGATTTTTCTATTTTGA
Found at i:7349961 original size:13 final size:13
Alignment explanation
Indices: 7349945--7350015 Score: 55
Period size: 12 Copynumber: 5.7 Consensus size: 13
7349935 TATTTTTCTA
7349945 TTTTGACTTTGATT
1 TTTTGA-TTTGATT
*
7349959 TTTTTATTTGA-T
1 TTTTGATTTGATT
7349971 TTTTGATTT--TT
1 TTTTGATTTGATT
*
7349982 TGATTT-TTTTGATT
1 T--TTTGATTTGATT
7349996 TTTT--TTTGATT
1 TTTTGATTTGATT
7350007 TTTTGATTT
1 TTTTGATTT
7350016 TTTTTTTAGT
Statistics
Matches: 47, Mismatches: 3, Indels: 15
0.72 0.05 0.23
Matches are distributed among these distances:
11 13 0.28
12 15 0.32
13 11 0.23
14 8 0.17
ACGTcount: A:0.13, C:0.01, G:0.11, T:0.75
Consensus pattern (13 bp):
TTTTGATTTGATT
Found at i:7349982 original size:20 final size:20
Alignment explanation
Indices: 7349952--7350019 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
7349942 CTATTTTGAC
7349952 TTTGATTTTTTTATTTGATT
1 TTTGATTTTTTTATTTGATT
*
7349972 TTTGATTTTTTGA-TT--TT
1 TTTGATTTTTTTATTTGATT
7349989 TTTGA-TTTTTT-TTTGATTT
1 TTTGATTTTTTTATTTGA-TT
7350008 TTTGATTTTTTT
1 TTTGATTTTTTT
7350020 TTTAGTCTAA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
16 7 0.17
17 7 0.17
19 9 0.22
20 18 0.44
ACGTcount: A:0.12, C:0.00, G:0.10, T:0.78
Consensus pattern (20 bp):
TTTGATTTTTTTATTTGATT
Found at i:7349983 original size:28 final size:28
Alignment explanation
Indices: 7349952--7350019 Score: 111
Period size: 28 Copynumber: 2.4 Consensus size: 28
7349942 CTATTTTGAC
7349952 TTTGATTTTTTT-ATTTGATTTTTGATTT
1 TTTGATTTTTTTGATTT-ATTTTTGATTT
*
7349980 TTTGATTTTTTTGATTTTTTTTTGATTT
1 TTTGATTTTTTTGATTTATTTTTGATTT
7350008 TTTGATTTTTTT
1 TTTGATTTTTTT
7350020 TTTAGTCTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
28 34 0.89
29 4 0.11
ACGTcount: A:0.12, C:0.00, G:0.10, T:0.78
Consensus pattern (28 bp):
TTTGATTTTTTTGATTTATTTTTGATTT
Found at i:7350022 original size:20 final size:19
Alignment explanation
Indices: 7349952--7350021 Score: 85
Period size: 19 Copynumber: 3.7 Consensus size: 19
7349942 CTATTTTGAC
7349952 TTTGATTTTTTTATTTGA-TT
1 TTTGA-TTTTTT-TTTGATTT
7349972 TTTGA---TTTTTTGATTTT
1 TTTGATTTTTTTTTGA-TTT
7349989 TTTGATTTTTTTTTGATTT
1 TTTGATTTTTTTTTGATTT
7350008 TTTGATTTTTTTTT
1 TTTGATTTTTTTTT
7350022 TAGTCTAAAC
Statistics
Matches: 45, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
15 5 0.11
16 3 0.07
17 7 0.16
19 17 0.38
20 13 0.29
ACGTcount: A:0.11, C:0.00, G:0.10, T:0.79
Consensus pattern (19 bp):
TTTGATTTTTTTTTGATTT
Found at i:7350771 original size:17 final size:18
Alignment explanation
Indices: 7350739--7350775 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
7350729 TTTGCACAGT
7350739 ATGATTATGAATGAAAGA
1 ATGATTATGAATGAAAGA
*
7350757 ATGATT-TGGATGAAAGA
1 ATGATTATGAATGAAAGA
7350774 AT
1 AT
7350776 AAAAGAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.30
Consensus pattern (18 bp):
ATGATTATGAATGAAAGA
Found at i:7351278 original size:19 final size:20
Alignment explanation
Indices: 7351249--7351297 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
7351239 CACTTCGTGA
* *
7351249 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAAATGCATG
*
7351268 CAATGTAATGCAAATGCATG
1 AAATGTAATGCAAATGCATG
7351288 AAATG-AATGC
1 AAATGTAATGC
7351298 CTAAAGAGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.27
Consensus pattern (20 bp):
AAATGTAATGCAAATGCATG
Found at i:7352977 original size:4 final size:4
Alignment explanation
Indices: 7352968--7353072 Score: 88
Period size: 4 Copynumber: 24.8 Consensus size: 4
7352958 ATACAACAAC
* ** *
7352968 AAAT AAAT AAAT AAAT AAACT AAA- ACAT AAA- AAAT GGAT ATAT AAAT
1 AAAT AAAT AAAT AAAT AAA-T AAAT AAAT AAAT AAAT AAAT AAAT AAAT
7353015 AAAT AAAT AAAT AAAT AAAT GAACAT AAAGT AAAAT AAAAT AAAAT AAAAT
1 AAAT AAAT AAAT AAAT AAAT -AA-AT AAA-T -AAAT -AAAT -AAAT -AAAT
7353066 AAAT AAA
1 AAAT AAA
7353073 ATAATAATAA
Statistics
Matches: 87, Mismatches: 7, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
3 5 0.06
4 52 0.60
5 25 0.29
6 5 0.06
ACGTcount: A:0.71, C:0.03, G:0.04, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:7353053 original size:5 final size:5
Alignment explanation
Indices: 7353011--7353089 Score: 71
Period size: 5 Copynumber: 16.4 Consensus size: 5
7353001 ATGGATATAT
* *
7353011 AAAT- AAAT- AAAT- AAAT- AAAT- AAATGA ACATA AAGTA AAATA AAATA
1 AAATA AAATA AAATA AAATA AAATA AAAT-A AAATA AAATA AAATA AAATA
7353057 AAATA AAAT- AAATA AAATA ATAATA ACAATA AA
1 AAATA AAATA AAATA AAATA A-AATA A-AATA AA
7353090 GGAAAATAGA
Statistics
Matches: 66, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
4 24 0.36
5 29 0.44
6 13 0.20
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.22
Consensus pattern (5 bp):
AAATA
Found at i:7353066 original size:47 final size:45
Alignment explanation
Indices: 7352968--7353097 Score: 121
Period size: 43 Copynumber: 2.9 Consensus size: 45
7352958 ATACAACAAC
* *
7352968 AAATAAATAAATAAATAAACT-AA-AACAT-AA-AAAATGGATATAT
1 AAATAAATAAATAAATAAA-TAAATAACATAAAGAAAAT-AAAATAT
7353011 AAATAAATAAATAAATAAATAAATGAACATAAAGTAAAATAAAATA-
1 AAATAAATAAATAAATAAATAAAT-AACATAAAG-AAAATAAAATAT
7353057 AAATAAAATAAATAAA-ATAAT-AATAACAATAAAGGAAAATA
1 AAAT-AAATAAATAAATA-AATAAATAAC-ATAAA-GAAAATA
7353098 GATAAAAATC
Statistics
Matches: 75, Mismatches: 2, Indels: 17
0.80 0.02 0.18
Matches are distributed among these distances:
42 1 0.01
43 21 0.28
45 8 0.11
46 21 0.28
47 19 0.25
48 5 0.07
ACGTcount: A:0.71, C:0.03, G:0.05, T:0.22
Consensus pattern (45 bp):
AAATAAATAAATAAATAAATAAATAACATAAAGAAAATAAAATAT
Found at i:7353106 original size:46 final size:46
Alignment explanation
Indices: 7352968--7353097 Score: 119
Period size: 47 Copynumber: 2.8 Consensus size: 46
7352958 ATACAACAAC
* * *
7352968 AAATAAATAAATAAATAAACTAAAACAT-AA--AAAATGGATATATAAAT
1 AAATAAATAAATAAATAAA-T-GAACATAAAGGAAAAT-AAAATA-AAAT
*
7353015 AAATAAATAAATAAATAAATGAACATAAAGTAAAATAAAATAAAAT
1 AAATAAATAAATAAATAAATGAACATAAAGGAAAATAAAATAAAAT
7353061 AAAATAAATAAA-ATAAT-AAT-AACAATAAAGGAAAATA
1 -AAATAAATAAATA-AATAAATGAAC-ATAAAGGAAAATA
7353098 GATAAAAATC
Statistics
Matches: 73, Mismatches: 4, Indels: 13
0.81 0.04 0.14
Matches are distributed among these distances:
45 8 0.11
46 23 0.32
47 37 0.51
48 5 0.07
ACGTcount: A:0.71, C:0.03, G:0.05, T:0.22
Consensus pattern (46 bp):
AAATAAATAAATAAATAAATGAACATAAAGGAAAATAAAATAAAAT
Found at i:7358671 original size:123 final size:123
Alignment explanation
Indices: 7358371--7358712 Score: 506
Period size: 125 Copynumber: 2.8 Consensus size: 123
7358361 GCAAAAGCAC
* *
7358371 ATTT-ACAAATTCTTCTCAAATAGCATCCTCCTAGAAGCGATTTTATACTATTTGCTCAGAAACG
1 ATTTCACAAATTCTTCTCAAATAGCATCATGCTAGAAGCGATTTTATACTATTTGCTCAGAAACG
* *
7358435 TCAAAAAAATTTATTTCTTCCATGACCTACTGTAGCAAAAGCGCGTCCACGATGGCGCG
66 TCAAAAAAA-TTATTTCTTCCATGACCTACTGTAGCAAAAGCGCATCCACGAGGGCGCG
* * *
7358494 ATTTTCTCAAATTCTTCTCAAATAACATCATGGTAGAAGCGATTTTATACTATTTGCTCAGAAAC
1 A-TTTCACAAATTCTTCTCAAATAGCATCATGCTAGAAGCGATTTTATACTATTTGCTCAGAAAC
* *
7358559 GTCAAAAAAATTATTTCTTCCATTACCTACTGTAGCAAAAGCGCATCCACTAGGGCGCG
65 GTCAAAAAAATTATTTCTTCCATGACCTACTGTAGCAAAAGCGCATCCACGAGGGCGCG
* * *
7358618 ATTTCACAAATTCTTCTTAAATAGCATCATGCTAGAAGCGATTTTATACTATTTGATCAGAGACG
1 ATTTCACAAATTCTTCTCAAATAGCATCATGCTAGAAGCGATTTTATACTATTTGCTCAGAAACG
** *
7358683 TCAACTCGAAATTATTTCTTCCAGGACCTA
66 TCAA--AAAAATTATTTCTTCCATGACCTA
7358713 AAAACCCTAA
Statistics
Matches: 196, Mismatches: 19, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
123 63 0.32
124 49 0.25
125 84 0.43
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (123 bp):
ATTTCACAAATTCTTCTCAAATAGCATCATGCTAGAAGCGATTTTATACTATTTGCTCAGAAACG
TCAAAAAAATTATTTCTTCCATGACCTACTGTAGCAAAAGCGCATCCACGAGGGCGCG
Found at i:7359998 original size:19 final size:19
Alignment explanation
Indices: 7359966--7360013 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
7359956 TTGGAAATTC
7359966 AATTTAAATAATAAAATATA
1 AATTT-AATAATAAAATATA
*
7359986 AATTTAATTATAAAATATA
1 AATTTAATAATAAAATATA
7360005 AATTTAATA
1 AATTTAATA
7360014 TTTTATTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 21 0.81
20 5 0.19
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (19 bp):
AATTTAATAATAAAATATA
Found at i:7360016 original size:26 final size:24
Alignment explanation
Indices: 7359975--7360022 Score: 60
Period size: 26 Copynumber: 1.9 Consensus size: 24
7359965 CAATTTAAAT
7359975 AATAAAATATAAATTTAATTATAA
1 AATAAAATATAAATTTAATTATAA
* *
7359999 AATATAAATTTAATATTTTATTAT
1 AATA-AAATATAA-ATTTAATTAT
7360023 TTTTTAAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 4 0.20
25 7 0.35
26 9 0.45
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (24 bp):
AATAAAATATAAATTTAATTATAA
Found at i:7362518 original size:4 final size:4
Alignment explanation
Indices: 7362509--7362703 Score: 390
Period size: 4 Copynumber: 48.8 Consensus size: 4
7362499 ATTTTGTTGT
7362509 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
7362557 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
7362605 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
7362653 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
7362701 ATA
1 ATA
7362704 TCTTTTTGCA
Statistics
Matches: 191, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 191 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:7376474 original size:33 final size:33
Alignment explanation
Indices: 7376422--7376484 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
7376412 GATCAACTTT
**
7376422 GTTATTTTACTATTGTATAATACTAAAAACAAA
1 GTTATTTTACTATCATATAATACTAAAAACAAA
*
7376455 GTTATTTTTCTATCATATAATACTAAAAAC
1 GTTATTTTACTATCATATAATACTAAAAAC
7376485 CTAACGGTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.43, C:0.11, G:0.05, T:0.41
Consensus pattern (33 bp):
GTTATTTTACTATCATATAATACTAAAAACAAA
Found at i:7379313 original size:22 final size:22
Alignment explanation
Indices: 7379271--7379346 Score: 56
Period size: 22 Copynumber: 3.7 Consensus size: 22
7379261 AATTTAAAAA
*
7379271 TGTATATAAATATATAGATATG
1 TGTATATAAATATATAAATATG
*
7379293 TGTATATAAGT-TATAAA-A--
1 TGTATATAAATATATAAATATG
* *
7379311 --TATAAAAATATATAAGTATG
1 TGTATATAAATATATAAATATG
* *
7379331 TGTATACATATATATA
1 TGTATATAAATATATA
7379347 TTTACAAAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 12
0.68 0.12 0.20
Matches are distributed among these distances:
16 7 0.17
17 5 0.12
18 1 0.02
20 1 0.02
21 5 0.12
22 22 0.54
ACGTcount: A:0.49, C:0.01, G:0.11, T:0.39
Consensus pattern (22 bp):
TGTATATAAATATATAAATATG
Found at i:7379554 original size:3 final size:3
Alignment explanation
Indices: 7379486--7379534 Score: 55
Period size: 3 Copynumber: 16.7 Consensus size: 3
7379476 AAATGAAAAT
* * * *
7379486 ATA ATG ATA ATA ACA ATA ATA TTA ATA ATA ATA CTA ATA ATA AT- ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7379533 AT
1 AT
7379535 TTATTATTTT
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:7382876 original size:99 final size:99
Alignment explanation
Indices: 7381160--7382868 Score: 2087
Period size: 99 Copynumber: 17.3 Consensus size: 99
7381150 ATCTATTCAT
* * * *
7381160 CAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAATTGCAATGTCAGGGAAGCAAGATT
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCT-TTTAATTGCAATGTCGGGGAAGCAAGATT
* * * *
7381225 CGCCGTTGTAGCTTTAATCTATTCCATTGCACCAC
65 CGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * * *
7381260 CAGGAAAGTAAGATTCGCCGTTGAGGCCTCAATCTTTTAATTGCAATGTCGAGAAAGCAAGATTC
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
* *
7381325 ACCGTTGTAGCTTCAATCTGTTCCATTGCACCGC
66 GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
** * * * * *
7381359 CAGAAAAGTAAGATTTGCCGTTGTGGCCTCGATCTTTTAATTGTAATGACAGGGAAGCAAGATTC
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
7381424 GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
66 GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * * ** *
7381458 CAAGGAAGTAAGATTCACCGTCGT----TTGATCTTTTAATCGCAATGTCGGGGAAGCAAGATTC
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
** *
7381519 GTTGTTGTAGCTTCAATCTATTCCACTGCACCGC
66 GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* ** * *
7381553 CAGGGAAGTAAGATTCACCGTTGTGGTTTCAATATTTTTAATTGCAATGTCGGAGAAGCAAGATT
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAAT-CTTTTAATTGCAATGTCGGGGAAGCAAGATT
* * * *
7381618 CGCCGTTGTAGCTTCAATCTATCCCACTACACTGC
65 CGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * * * *
7381653 TAGGGAAGTAAGATTCGTCGTTGTGGCTTCAATTTTTTTAA-TGCAATGTCGGGGAAGTAAGATT
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAA-TCTTTTAATTGCAATGTCGGGGAAGCAAGATT
* * * *
7381717 TGTCATTGTAGCTTCAATCTGTCCCACTGCACCGC
65 CGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * * * * *
7381752 CAAGGAAGTAAGATTCGCTGTTGTCGCTTCAATCTTTTTAATTGCAATGTCGGGAAAACAAGATT
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATC-TTTTAATTGCAATGTCGGGGAAGCAAGATT
* * *
7381817 CACCGTTGTAGCTTTAATCTGTTCCACTACACCGC
65 CGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * * *
7381852 CAGGAAAGTAAGATTCACCGTTGTGACCTCAATCTTTTAATTGCAATGTCGAGGAAGCAAGATTC
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
*
7381917 GCCGTTGTAGCTTCAATCTGTTTCACTGCACCGC
66 GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
** * *
7381951 CAGAAAAGTAAGATTTGCCGTTGTGGCCTCGATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
* * * *
7382016 ACCGTTGTAGCTTTAATTTGTTCCACTGCACTGC
66 GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * *
7382050 CAGGGAAGTAAGATTCGCTGTTGTGGCCTCGATCTTTTAATTGCAATGTCGGGAAAGCAAGATTC
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
* * * * *
7382115 GTCGTTCTAACTTCAATCTGTTCCACTACACTGC
66 GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * *
7382149 CAGGGAAATAAGATTTGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCAGGGAAGCAAGATTC
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
** *
7382214 GCCGTTGTAGCTTCAATCTGTTCCTTTGCACCAC
66 GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
** * * **
7382248 CAGAAAAGTAATATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGAGGAAGTGAGATTC
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
* * *
7382313 GCCGTTGTAGCTTCAATCTATTCTACTGCACTGC
66 GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * ** ** *
7382347 TAGGGAAATAAGATTCGCCGTTGTGGCCTTGATCTTTTAATTGCAATACCGAGGAAGCAAGATTC
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
* * * *
7382412 ACCGTTGTAGCTTTAATCTGTTCTACTGCACCAC
66 GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * * * * *
7382446 TAGGGAAATAAGATTCGCCGTTATGGCCTCGATCTTTTAATTGCAATGTAGGGGAAGTAAGATTC
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
*
7382511 GCCGTTGTAGCTTCAATCTGTTCCACTACACCGC
66 GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * * * ***
7382545 CAGGGAAATAAGATTCACCGTTGTGACCTTAATCTTTTAATTGCAATGTCGGGGAAATGAGATTC
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
* * **
7382610 ACCGTTGTAGCTTCAATCTATTCCACTGCATTGC
66 GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * * * * ** * *
7382644 CAGGGAAGTAAGATTCGTCGTTATGACCTTAATCTTTTAATTACAATACCGGGGAAGCGAGATTT
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
* * *
7382709 GCTGTTGTAGCTTCAATCTATTCTACTGCACCGC
66 GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * * *
7382743 CAGGGAAATAAGATTCACCGTTGTGGCCTCGATCTTTTAATTGCAATGTCGGGGAAGCAAGATTT
1 CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
*
7382808 GCCTTTGTAGCTTCAATCTGTTCCACTGCACCGC
66 GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
*
7382842 CAGGGAAGTAAGATTCACCGTTGTGGC
1 CAGGGAAGTAAGATTCGCCGTTGTGGC
7382869 TTCGATCTGC
Statistics
Matches: 1385, Mismatches: 216, Indels: 17
0.86 0.13 0.01
Matches are distributed among these distances:
95 85 0.06
98 1 0.00
99 1100 0.79
100 198 0.14
101 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (99 bp):
CAGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
GCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
Found at i:7383227 original size:24 final size:24
Alignment explanation
Indices: 7383167--7383228 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 24
7383157 TCGGATTGCC
* *
7383167 CCCACTGTAATCTTCAAAGTTTAA
1 CCCACTGTAATTTTCAAAGGTTAA
* * *
7383191 TCCATTGTGATTTTC-AAGGTTAA
1 CCCACTGTAATTTTCAAAGGTTAA
7383214 GCCCACTGTAATTTT
1 -CCCACTGTAATTTT
7383229 GGGACATAAA
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
23 7 0.24
24 22 0.76
ACGTcount: A:0.27, C:0.21, G:0.13, T:0.39
Consensus pattern (24 bp):
CCCACTGTAATTTTCAAAGGTTAA
Found at i:7383879 original size:108 final size:107
Alignment explanation
Indices: 7383680--7383879 Score: 276
Period size: 108 Copynumber: 1.9 Consensus size: 107
7383670 TTTTAACATT
* * *
7383680 TGAAAAAGATTATCACGATGGACAAACAAAATGTTATTGAGAACAAATCTCAAAATGAATAAGTT
1 TGAAAAAGATTATCACAATGGACAAACAAAATGTTATTGAGAACAAAGCTCAAAATGAATAAATT
**
7383745 AATCAAGATAGCAAATTTTGTTAAGATACGAACTGAATAAGA
66 AATCAAGATAGCAAATTTTGCCAAGATACGAACTGAATAAGA
** * * **
7383787 TGAAAAAGATTATCACAATGGACAAGATGAAAT-TTTTTAGAGAGCAAAGCTTGAAATGAATAAA
1 TGAAAAAGATTATCACAATGGACAA-ACAAAATGTTATT-GAGAACAAAGCTCAAAATGAATAAA
7383851 TTAATCAAGATAGCAAATTTTGCCAAGAT
64 TTAATCAAGATAGCAAATTTTGCCAAGAT
7383880 TCAAAATAGA
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
107 28 0.35
108 52 0.65
ACGTcount: A:0.47, C:0.10, G:0.17, T:0.26
Consensus pattern (107 bp):
TGAAAAAGATTATCACAATGGACAAACAAAATGTTATTGAGAACAAAGCTCAAAATGAATAAATT
AATCAAGATAGCAAATTTTGCCAAGATACGAACTGAATAAGA
Found at i:7395407 original size:20 final size:19
Alignment explanation
Indices: 7395361--7395407 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
7395351 CATAAAAATT
7395361 TAAAA-ATGTATATAGATA
1 TAAAATATGTATATAGATA
* *
7395379 TATAGATATGTATATAAGTTA
1 TA-AAATATGTATAT-AGATA
7395400 TAAAATAT
1 TAAAATAT
7395408 AAAAATATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 2 0.09
19 2 0.09
20 13 0.57
21 6 0.26
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.38
Consensus pattern (19 bp):
TAAAATATGTATATAGATA
Found at i:7395478 original size:21 final size:21
Alignment explanation
Indices: 7395452--7395496 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
7395442 TTATAAAAAT
7395452 TAAAAAAATATGTACGTATATA
1 TAAAAAAA-ATGTACGTATATA
* *
7395474 TAAAAAAAATGTATGTATGTA
1 TAAAAAAAATGTACGTATATA
7395495 TA
1 TA
7395497 CACATATAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.53, C:0.02, G:0.11, T:0.33
Consensus pattern (21 bp):
TAAAAAAAATGTACGTATATA
Found at i:7395599 original size:3 final size:3
Alignment explanation
Indices: 7395579--7395626 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
7395569 AAATGAAAAT
* * * *
7395579 ATA ATG ATA ATA AAA ATA ATA TTA ATA ATA ATA CTA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7395627 CAATTTATTA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7398362 original size:27 final size:26
Alignment explanation
Indices: 7398306--7398363 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
7398296 TTTACTAATT
* * *
7398306 TTTTTTTGTAAAATTTGACATCTATT
1 TTTTTTAGTAAAATTTGACATCAATC
* *
7398332 TTTTTTAGTTAAATTTGACCCTCAATC
1 TTTTTTAGTAAAATTTGA-CATCAATC
7398359 TTTTT
1 TTTTT
7398364 AAAAAAGAGT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 16 0.62
27 10 0.38
ACGTcount: A:0.24, C:0.12, G:0.07, T:0.57
Consensus pattern (26 bp):
TTTTTTAGTAAAATTTGACATCAATC
Found at i:7401952 original size:44 final size:44
Alignment explanation
Indices: 7401884--7402404 Score: 344
Period size: 44 Copynumber: 11.7 Consensus size: 44
7401874 GGTTTTAGTT
* *
7401884 TGCTCCACTGCAACTTCAGTGAGATAAGACTTGTATCTTCAACC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTCAATC
* ** ** *
7401928 TACTCCACTGCAACTTCAGGGAGATAAGGTTTGATATGATAAGATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TATCTTCA-ATC
* * * * * * *
7401974 TAATTCGACCTACTGCAACTTTAGAGG-TATATGA-TT-CATCGTTTTAATC
1 ---TGC-TCC-ACTGCAACTTCAG-GGAGATAAGACTTGTATC--TTCAATC
* * *
7402023 CGCTCCACTGCAACTTCAGGGAGATAGGA-TTAGTAGCTTCAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTT-GTATCTTCAATC
* * *
7402067 TGTTCCACTGCAACTTCAGGGAGATAAGACTCGCTATCTTCAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TATCTTCAATC
* * * *
7402112 TGCCCCACTGCAAGTTCA-GGAGGATAAGACTTGCTTTCTTCAGTC
1 TGCTCCACTGCAACTTCAGGGA-GATAAGACTTG-TATCTTCAATC
* * *
7402157 TGCTCCACTGCAACTTCAGGGAAATAAGACTTGTAACTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTCAATC
* * * *
7402201 CGCTCCACTGCAACTTCAGGGAGATAGGA-TTAT-TGGCTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAT--CTTCAATC
* * ** *
7402245 TGCTCCACTGCAACTTCAAGGATATAAGA-TTCACCATCTTCAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTT--GTATCTTCAATC
* * * **
7402290 TGCCCCACTGCAACTTCAGGGGGATAAGACTTGTTTTCTTCAGCC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TATCTTCAATC
* * * * *
7402335 TACTCCACTGTAACTTAAGGGAGATAAGACTTG-AT-AT-GATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTCAATC
* **
7402376 TGCTCTACTGCAACTTCAAAGAGATAAGA
1 TGCTCCACTGCAACTTCAGGGAGATAAGA
7402405 TCGATAATTT
Statistics
Matches: 371, Mismatches: 82, Indels: 51
0.74 0.16 0.10
Matches are distributed among these distances:
41 24 0.06
42 1 0.00
43 6 0.02
44 152 0.41
45 146 0.39
46 10 0.03
47 1 0.00
48 2 0.01
49 5 0.01
50 6 0.02
51 16 0.04
52 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (44 bp):
TGCTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTCAATC
Found at i:7402210 original size:178 final size:178
Alignment explanation
Indices: 7402016--7402367 Score: 551
Period size: 178 Copynumber: 2.0 Consensus size: 178
7402006 GATTCATCGT
*
7402016 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTAGCTTCAATCTGTTCCACTGCAAC
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTAGCTTCAATCTGCTCCACTGCAAC
* * * *
7402081 TTCAGGGAGATAAGACTCGCTATCTTCAGTCTGCCCCACTGCAAGTTCAGGAGGATAAGACTTGC
66 TTCAAGGAGATAAGACTCACCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGC
* * *
7402146 TTTCTTCAGTCTGCTCCACTGCAACTTCAGGGAAATAAGACTTGTAAC
131 TTTCTTCAGCCTACTCCACTGCAACTTAAGGGAAATAAGACTTGTAAC
* * *
7402194 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAAC
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTAGCTTCAATCTGCTCCACTGCAAC
* * * *
7402259 TTCAAGGATATAAGATTCACCATCTTCAGTCTGCCCCACTGCAACTTCAGGGGGATAAGACTTGT
66 TTCAAGGAGATAAGACTCACCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGC
* *
7402324 TTTCTTCAGCCTACTCCACTGTAACTTAAGGGAGATAAGACTTG
131 TTTCTTCAGCCTACTCCACTGCAACTTAAGGGAAATAAGACTTG
7402368 ATATGATCTG
Statistics
Matches: 157, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
178 157 1.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (178 bp):
TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTAGCTTCAATCTGCTCCACTGCAAC
TTCAAGGAGATAAGACTCACCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGC
TTTCTTCAGCCTACTCCACTGCAACTTAAGGGAAATAAGACTTGTAAC
Found at i:7402545 original size:50 final size:50
Alignment explanation
Indices: 7402488--7403143 Score: 379
Period size: 50 Copynumber: 13.1 Consensus size: 50
7402478 ACTGCAATGT
** * *
7402488 CAGGGAAGTAAGATTTACTATTGTAGCTTCAATCTGTTCCACTACACAGC
1 CAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACAGC
* * * ** * *
7402538 CAGGGAAGTAAAATTCACTGTTGTAGCTTCAATCTTTTTAACTGTA-ATGT
1 CAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACA-GC
* * * * *
7402588 CGGGGAAGCAAGATTCGTTGTTGTAACTTCAATCTGTTCCACTGCACCGC
1 CAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACAGC
* * * * * * * ** *
7402638 CAAGGAGGTAAAATTTGCCGTTGTGGCTTCAATCTTTTTAACTGCA-ATGT
1 CAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACA-GC
* * * * * *
7402688 CGGGGAAGTAAGATTCACTGTTGTACCTTTAATCTGTTCCACTGTACCGC
1 CAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACAGC
* * * * ** * *
7402738 CAGGGAAGTAAGACTCGCCGTTGTGGCTTCAATCTTTTTAATTGCA-ATGT
1 CAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACA-GC
* * * * * *
7402788 CGGGGAAGCAAGATTCGTTGTTGTAGCTTCAATCTATTCCACTGTACCGC
1 CAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACAGC
** * * * ** * *
7402838 CAGGGAAGTAAGATTTACCGTTGTGGCTTCAATCTTTTTAATTGCA-ATGT
1 CAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACA-GC
* * * * * ** *
7402888 CAGAGAAGCAAGATTTGCCGTTGTAGCTTCAATCTGTCCCACTATACTGC
1 CAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACAGC
* * * * ** * *
7402938 CAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATTTTTTTAATTGCA-ATGT
1 CAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACA-GC
* * * * * *
7402988 CGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTCCCACTGCACTGC
1 CAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACAGC
* * * * ** * *
7403038 CAGGAAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAATTGCA-ATGT
1 CAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACA-GC
* ** * * * * *
7403088 CGGGGAAACAAGATTTGCCGTTGTAGCTTTAATCTGTTCCACTGCACCGT
1 CAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACAGC
7403138 CAGGGA
1 CAGGGA
7403144 TGCACCGCCA
Statistics
Matches: 437, Mismatches: 157, Indels: 24
0.71 0.25 0.04
Matches are distributed among these distances:
49 1 0.00
50 436 1.00
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (50 bp):
CAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACAGC
Found at i:7402594 original size:100 final size:100
Alignment explanation
Indices: 7402475--7403294 Score: 982
Period size: 100 Copynumber: 8.1 Consensus size: 100
7402465 TTTAGTCTAA
* * * ** * * *
7402475 TTAACTGCAATGTCAGGGAAGTAAGATTTACTATTGTAGCTTCAATCTGTTCCACTACACAGCCA
1 TTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCA
* * * *
7402540 GGGAAGTAAAATTCACTGTTGTAGCTTCAATCTTT
66 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
* * * *
7402575 TTAACTGTAATGTCGGGGAAGCAAGATTCGTTGTTGTAACTTCAATCTGTTCCACTGCACCGCCA
1 TTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCA
* * * *
7402640 AGGAGGTAAAATTTGCCGTTGTGGCTTCAATCTTT
66 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
* * * * * *
7402675 TTAACTGCAATGTCGGGGAAGTAAGATTCACTGTTGTACCTTTAATCTGTTCCACTGTACCGCCA
1 TTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCA
*
7402740 GGGAAGTAAGACTCGCCGTTGTGGCTTCAATCTTT
66 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
* * *
7402775 TTAATTGCAATGTCGGGGAAGCAAGATTCGTTGTTGTAGCTTCAATCTATTCCACTGTACCGCCA
1 TTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCA
**
7402840 GGGAAGTAAGATTTACCGTTGTGGCTTCAATCTTT
66 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
* * * * * ** *
7402875 TTAATTGCAATGTCAGAGAAGCAAGATTTGCCGTTGTAGCTTCAATCTGTCCCACTATACTGCCA
1 TTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCA
*
7402940 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATTTTT
66 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
* * * *
7402975 TTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTCCCACTGCACTGCCA
1 TTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCA
*
7403040 GGAAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
66 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
* * * *
7403075 TTAATTGCAATGTCGGGGAAACAAGATTTGCCGTTGTAGCTTTAATCTGTTCCACTGCACCGTCA
1 TTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTT---C--CA----C-
7403140 GGGATGCACCGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATC--T
56 ----TGCACCGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
* * * * *
7403187 TT--TTGCAATGTTGGGGAAGCAAGATTCACTGTTGTAGCTTGAATCTATTCCACTGCATCGCCA
1 TTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCA
*
7403250 GGGAAGTAAGATTCGCCGTTGTGACTTCAATCTTT
66 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
7403285 TTAATTGCAA
1 TTAATTGCAA
7403295 CCTCAAGGGT
Statistics
Matches: 628, Mismatches: 74, Indels: 36
0.85 0.10 0.05
Matches are distributed among these distances:
96 40 0.06
98 3 0.00
100 494 0.79
101 1 0.00
103 1 0.00
105 4 0.01
107 1 0.00
109 1 0.00
110 40 0.06
112 3 0.00
114 40 0.06
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (100 bp):
TTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCA
GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
Found at i:7403241 original size:110 final size:112
Alignment explanation
Indices: 7403030--7403253 Score: 317
Period size: 110 Copynumber: 2.0 Consensus size: 112
7403020 TCTGTCCCAC
*
7403030 TGCACTGCCAGGAAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAA
1 TGCACCGCCAGGAAAGTAAGATTCGCCGTTGTGGCTTCAATC-TTTT-ATTGCAATGTCGGGGAA
** * * *
7403095 ACAAGATTTGCCGTTGTAGCTTTAATCTGTTCCACTGCACCGTCAGGGA
64 ACAAGATTCACCGTTGTAGCTTGAATCTATTCCACTGCACCGCCAGGGA
* * *
7403144 TGCACCGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATC-TTT-TTGCAATGTTGGGGAAGC
1 TGCACCGCCAGGAAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTATTGCAATGTCGGGGAAAC
* *
7403207 AAGATTCACTGTTGTAGCTTGAATCTATTCCACTGCATCGCCAGGGA
66 AAGATTCACCGTTGTAGCTTGAATCTATTCCACTGCACCGCCAGGGA
7403254 AGTAAGATTC
Statistics
Matches: 99, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
110 56 0.57
112 3 0.03
114 40 0.40
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.30
Consensus pattern (112 bp):
TGCACCGCCAGGAAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTATTGCAATGTCGGGGAAAC
AAGATTCACCGTTGTAGCTTGAATCTATTCCACTGCACCGCCAGGGA
Found at i:7403271 original size:50 final size:46
Alignment explanation
Indices: 7403144--7403284 Score: 124
Period size: 46 Copynumber: 3.0 Consensus size: 46
7403134 CCGTCAGGGA
* * *
7403144 TGCACCGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTT
1 TGCATCGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTC
*** * * * *
7403190 TGCAAT-GTTGGGGAAGCAAGATTCACTGTTGTAGCTTGAATCTATTCCAC
1 TGC-ATCGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TT---C
7403240 TGCATCGCCAGGGAAGTAAGATTCGCCGTTGT-GACTTCAATCTTT
1 TGCATCGCCAGGGAAGTAAGATTCGCCGTTGTAG-CTTCAATCTTT
7403285 TTAATTGCAA
Statistics
Matches: 71, Mismatches: 17, Indels: 11
0.72 0.17 0.11
Matches are distributed among these distances:
46 32 0.45
47 3 0.04
49 5 0.07
50 31 0.44
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (46 bp):
TGCATCGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTC
Found at i:7404186 original size:19 final size:19
Alignment explanation
Indices: 7404162--7404198 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
7404152 GACCTTTCCT
7404162 TTTTCTTTTTTTGTTCTTC
1 TTTTCTTTTTTTGTTCTTC
*
7404181 TTTTCTTTTTTTTTTCTT
1 TTTTCTTTTTTTGTTCTT
7404199 TTATTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.00, C:0.14, G:0.03, T:0.84
Consensus pattern (19 bp):
TTTTCTTTTTTTGTTCTTC
Found at i:7404197 original size:16 final size:17
Alignment explanation
Indices: 7404162--7404208 Score: 60
Period size: 16 Copynumber: 2.7 Consensus size: 17
7404152 GACCTTTCCT
7404162 TTTTCTTTTTTTGTTCTTC
1 TTTTC-TTTTTT-TTCTTC
7404181 TTTTCTTTTTTTT-TTC
1 TTTTCTTTTTTTTCTTC
*
7404197 TTTTATTTTTTT
1 TTTTCTTTTTTT
7404209 CAAGTGAAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 14 0.52
17 2 0.07
18 6 0.22
19 5 0.19
ACGTcount: A:0.02, C:0.11, G:0.02, T:0.85
Consensus pattern (17 bp):
TTTTCTTTTTTTTCTTC
Found at i:7404208 original size:19 final size:20
Alignment explanation
Indices: 7404160--7404208 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
7404150 TTGACCTTTC
*
7404160 CTTTTTCTTTTTTTGTTCTT
1 CTTTTTTTTTTTTTGTTCTT
*
7404180 CTTTTCTTTTTTTT-TTCTT
1 CTTTTTTTTTTTTTGTTCTT
*
7404199 -TTATTTTTTT
1 CTTTTTTTTTT
7404209 CAAGTGAAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
18 8 0.32
19 5 0.20
20 12 0.48
ACGTcount: A:0.02, C:0.12, G:0.02, T:0.84
Consensus pattern (20 bp):
CTTTTTTTTTTTTTGTTCTT
Found at i:7408853 original size:120 final size:120
Alignment explanation
Indices: 7408595--7408838 Score: 461
Period size: 120 Copynumber: 2.0 Consensus size: 120
7408585 AATCAGTGCA
*
7408595 ACCTCAATGGTATAATCATCCTTTTAACTTACTTAACCAAGCCAAATTATACCATTATCTCACAC
1 ACCTCAATGGTATAATCATCCTTTTAACTTACTTAACCAAGCCAAATTATACCATCATCTCACAC
7408660 ATAGAATGACCCACCTATCATACTTCTAAATTATGTCACTTAATAGACCAAATAT
66 ATAGAATGACCCACCTATCATACTTCTAAATTATGTCACTTAATAGACCAAATAT
7408715 ACCTCAATGGTATAATCATCCTTTTAACTTACTTAACCAAGCCAAATTATACCATCATCTCACAC
1 ACCTCAATGGTATAATCATCCTTTTAACTTACTTAACCAAGCCAAATTATACCATCATCTCACAC
* *
7408780 ATAGAATGACCCACTTATCATACTTCTCAATTATGTCACTTAATAGACCAAATAT
66 ATAGAATGACCCACCTATCATACTTCTAAATTATGTCACTTAATAGACCAAATAT
7408835 ACCT
1 ACCT
7408839 AACCTTTATC
Statistics
Matches: 121, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 121 1.00
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.32
Consensus pattern (120 bp):
ACCTCAATGGTATAATCATCCTTTTAACTTACTTAACCAAGCCAAATTATACCATCATCTCACAC
ATAGAATGACCCACCTATCATACTTCTAAATTATGTCACTTAATAGACCAAATAT
Found at i:7413366 original size:50 final size:50
Alignment explanation
Indices: 7413255--7413452 Score: 198
Period size: 50 Copynumber: 3.8 Consensus size: 50
7413245 ATTTGGGTAA
* * *
7413255 AGAGATCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCA---AG---ATG
* *
7413311 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
** * * *
7413361 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCTATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
** * * * *
7413411 AGAACTCTCATGTAAGACCATATCTGGGATATGACATTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
7413453 GTACAAGAAA
Statistics
Matches: 121, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
50 79 0.65
53 2 0.02
56 40 0.33
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
Found at i:7424274 original size:26 final size:26
Alignment explanation
Indices: 7424238--7424291 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
7424228 TTTCCACAAG
7424238 AAAATTTTAATTTTTTTGGTACCTAT
1 AAAATTTTAATTTTTTTGGTACCTAT
7424264 AAAATTTTAATTTTTTTGGTACCTAT
1 AAAATTTTAATTTTTTTGGTACCTAT
7424290 AA
1 AA
7424292 GCTCCAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.52
Consensus pattern (26 bp):
AAAATTTTAATTTTTTTGGTACCTAT
Found at i:7425291 original size:16 final size:16
Alignment explanation
Indices: 7425266--7425298 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
7425256 TATTTTTTAA
7425266 AAAAATTATAATATTTT
1 AAAAATTATAA-ATTTT
7425283 AAAAA-TATAAATTTT
1 AAAAATTATAAATTTT
7425298 A
1 A
7425299 GAATTTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 5 0.31
17 5 0.31
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
AAAAATTATAAATTTT
Found at i:7425349 original size:20 final size:19
Alignment explanation
Indices: 7425293--7425364 Score: 92
Period size: 20 Copynumber: 3.7 Consensus size: 19
7425283 AAAAATATAA
7425293 ATTTTAGAATTTTTATAAA-T
1 ATTTT-GAATTTTTA-AAATT
* *
7425313 ATTTAGAATTTTAAAAATT
1 ATTTTGAATTTTTAAAATT
7425332 ATTTTGAATTTTTGAAAATT
1 ATTTTGAATTTTT-AAAATT
7425352 ATTTTGAATTTTT
1 ATTTTGAATTTTT
7425365 TTTTAATTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
18 3 0.07
19 20 0.43
20 23 0.50
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.56
Consensus pattern (19 bp):
ATTTTGAATTTTTAAAATT
Found at i:7427502 original size:16 final size:15
Alignment explanation
Indices: 7427477--7427515 Score: 62
Period size: 16 Copynumber: 2.6 Consensus size: 15
7427467 ATATATATTT
7427477 AAAT-TTATAAAATA
1 AAATATTATAAAATA
7427491 AAATCATTATAAAATA
1 AAAT-ATTATAAAATA
7427507 AAATATTAT
1 AAATATTAT
7427516 GGAACTATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 4 0.17
15 5 0.22
16 14 0.61
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (15 bp):
AAATATTATAAAATA
Found at i:7427839 original size:22 final size:22
Alignment explanation
Indices: 7427811--7427877 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
7427801 TCTCTGATTA
*
7427811 TTAGCACGTCATTGCTCTCTGT
1 TTAGCACATCATTGCTCTCTGT
7427833 TTAGCACATC-TATGCTCTCTGT
1 TTAGCACATCAT-TGCTCTCTGT
* * * *
7427855 ATAGCACTTTAGTGCTCTCTGT
1 TTAGCACATCATTGCTCTCTGT
7427877 T
1 T
7427878 CATTAGTGCA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 36 0.97
ACGTcount: A:0.16, C:0.25, G:0.16, T:0.42
Consensus pattern (22 bp):
TTAGCACATCATTGCTCTCTGT
Found at i:7436659 original size:37 final size:37
Alignment explanation
Indices: 7436609--7436687 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
7436599 TTATTACGAA
* *
7436609 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
7436646 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
7436683 GTCTT
1 GTCTT
7436688 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:7436884 original size:47 final size:47
Alignment explanation
Indices: 7436806--7437198 Score: 642
Period size: 47 Copynumber: 8.3 Consensus size: 47
7436796 CCCTTCGGGA
* * * * * * *
7436806 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
7436853 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7436900 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
7436947 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
7436994 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
7437041 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
7437088 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7437135 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7437184 CTTATCACATATATA
1 CTTATCACATATATA
7437199 TATTATTCAA
Statistics
Matches: 327, Mismatches: 17, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 281 0.86
49 46 0.14
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:7444243 original size:21 final size:21
Alignment explanation
Indices: 7444219--7444260 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
7444209 TAAGTGTCAC
7444219 AATT-AAAATGGATATTAATTT
1 AATTGAAAATGGAT-TTAATTT
* *
7444240 AATTGATAATTGATTTAATTT
1 AATTGAAAATGGATTTAATTT
7444261 TTTTATAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.48
Consensus pattern (21 bp):
AATTGAAAATGGATTTAATTT
Found at i:7446009 original size:14 final size:15
Alignment explanation
Indices: 7445986--7446041 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
7445976 ACAATATATT
7445986 AACATAAATAACTAA
1 AACATAAATAACTAA
** *
7446001 AACAT-AATATTTCA
1 AACATAAATAACTAA
*
7446015 AATATAAATAACTAA
1 AACATAAATAACTAA
*
7446030 AATATAATATAA
1 AACATAA-ATAA
7446042 AGTAAAAAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
14 10 0.31
15 18 0.56
16 4 0.12
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.29
Consensus pattern (15 bp):
AACATAAATAACTAA
Found at i:7446281 original size:21 final size:21
Alignment explanation
Indices: 7446243--7446282 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7446233 TGACAGATCA
* *
7446243 TAGAAAAAGAAACCAAAAATC
1 TAGAAAAAAAAAACAAAAATC
*
7446264 TAGAAAAAAAAAAGAAAAA
1 TAGAAAAAAAAAACAAAAA
7446283 AAATTAAATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.75, C:0.07, G:0.10, T:0.07
Consensus pattern (21 bp):
TAGAAAAAAAAAACAAAAATC
Found at i:7455249 original size:20 final size:20
Alignment explanation
Indices: 7455215--7455256 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
7455205 AACTATTTAA
** *
7455215 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
7455235 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
7455255 AT
1 AT
7455257 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:7460181 original size:50 final size:51
Alignment explanation
Indices: 7460106--7460238 Score: 180
Period size: 50 Copynumber: 2.6 Consensus size: 51
7460096 GTGAAGTTGC
*
7460106 TAGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA-ATG-A
1 TAGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGATA-GCA
* * * *
7460156 TAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCT
1 TAGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGATAGCA
* *
7460207 TCGATCACGTGTGTAGTACTATGTGCAGGCTA
1 TAGGTCACGTGTGTAGTACTATGTGCAGGCTA
7460239 TGTGAACCGA
Statistics
Matches: 72, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
50 43 0.60
51 29 0.40
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (51 bp):
TAGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGATAGCA
Found at i:7462126 original size:19 final size:19
Alignment explanation
Indices: 7462090--7462126 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7462080 GATAATAATT
* *
7462090 TGAAATTTTTTAATTTGGA
1 TGAAATTTTATAACTTGGA
7462109 TGAAATTTTATAACTTGG
1 TGAAATTTTATAACTTGG
7462127 TTTAATATGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.03, G:0.16, T:0.49
Consensus pattern (19 bp):
TGAAATTTTATAACTTGGA
Found at i:7470459 original size:477 final size:477
Alignment explanation
Indices: 7469559--7470601 Score: 1840
Period size: 477 Copynumber: 2.2 Consensus size: 477
7469549 GGCCAAGTTT
* * * *
7469559 TTCTTCTCAGCTTCTG-CAGTCCTCAGCTTTTCAGCAAGATCATTCTTCTCTTGAGCTACTGCCT
1 TTCTTATCAGCTTCAGTC-GTCCTCAGCTTTTTAGCAAGATCATTCTTCTCTTGAGCTACTTCCT
*
7469623 GCATCATTTAAGTTTTCACCACAGTAAGATGACTCCTCAAAGGCAAAGGGCACTTGGAAACATTT
65 GCATCATTTAAGTTTTCACCTCAGTAAGATGACTCCTCAAAGGCAAAGGGCACTTGGAAACATTT
* *
7469688 TACAGCCAATAGAGGCTTTTGTCCTTCTGCGAAGATACTCTAGCAAGGACAACCAGGTCAGATGC
130 TACAGCAAATAGAGGCTTTTGTCCTTCTGCGAAGATAATCTAGCAAGGACAACCAGGTCAGATGC
* *
7469753 AAAACAAAATTGAACTGAATGTGAAGTTTTAGATTTATGGTAGAAAGAACCATTATCATAACTGA
195 AAAACAAAATTGAACTGAATGTGAAGTTTTAGATTTACGGTAGAAAGAACCATTAACATAACTGA
*
7469818 GACCCAGAGAAAGTAAGAAGAGACAAACCTGCAAACTATTCAACTTCACTTCCAGCTCATCATTA
260 GACCCAGAGAAAGTAAGAAGAAACAAACCTGCAAACTATTCAACTTCACTTCCAGCTCATCATTA
7469883 TAGTTCTTACAGCGTCCAATTTCCTCTTCCTTCTCCTGTTTCTCTCTTTTGATCTGCCTAAGTTC
325 TAGTTCTTACAGCGTCCAATTTCCTCTTCCTTCTCCTGTTTCTCTCTTTTGATCTGCCTAAGTTC
* *
7469948 TTGCTTCAACGTCTGGACTTCATTTGAAAGTGACTGTTGTTCTGCTTTTTGAGCTTCAACTTCTG
390 TTGCTTCAACATCTGGACTTCATTTGAAAGTGACTGTTGTTCTGCGTTTTGAGCTTCAACTTCTG
*
7470013 TTCTCAATTCTTCAACGAATCTG
455 TTCTCAATTCTTCAACGAAGCTG
*
7470036 TTCTTATCAGCTTCAGTCTTCCTCAGCTTTTTAGCAAGATCATTCTTCTCTTGAGCTACTTCCTG
1 TTCTTATCAGCTTCAGTCGTCCTCAGCTTTTTAGCAAGATCATTCTTCTCTTGAGCTACTTCCTG
7470101 CATCATTTAAGTTTTCACCTCAGTAAGATGACTCCTCAAAGGCAAAGGGCACTTGGAAACATTTT
66 CATCATTTAAGTTTTCACCTCAGTAAGATGACTCCTCAAAGGCAAAGGGCACTTGGAAACATTTT
*
7470166 ACAGCAAATAGAGGCTTTTGTCCTTCTGCGAGGATAATCTAGCAAGGACAACCAGGTCAGATGCA
131 ACAGCAAATAGAGGCTTTTGTCCTTCTGCGAAGATAATCTAGCAAGGACAACCAGGTCAGATGCA
*
7470231 AAACAAAATTGAACTGAATGTGAAGTTTTAGATTTACGGTAGAAAGAACCATTAACATAAGT-AG
196 AAACAAAATTGAACTGAATGTGAAGTTTTAGATTTACGGTAGAAAGAACCATTAACATAACTGA-
*
7470295 GACCCAGAGAAAGTAAGAAGAAACAAACCTGCAAACTATTTAACTTCACTTCCAGCTCATCATTA
260 GACCCAGAGAAAGTAAGAAGAAACAAACCTGCAAACTATTCAACTTCACTTCCAGCTCATCATTA
*
7470360 TAGTTCTTACAGCGTCCAATTTCCTCTTCCTTCTCCTGTTTCTCTCTTTTGATCTGCTTAAGTTC
325 TAGTTCTTACAGCGTCCAATTTCCTCTTCCTTCTCCTGTTTCTCTCTTTTGATCTGCCTAAGTTC
7470425 TTGCTTCAACATCTGGACTTCATTTGAAAGTGACTGTTGTTCTGCGTTTTGAGCTTCAACTTCTG
390 TTGCTTCAACATCTGGACTTCATTTGAAAGTGACTGTTGTTCTGCGTTTTGAGCTTCAACTTCTG
*
7470490 TTCTCAATTCTTCAACGAGGCTG
455 TTCTCAATTCTTCAACGAAGCTG
* * **
7470513 TTCTTATCAGCTTCGGTGGTCCTCAGCTTTTTAGCAAGATCATTCTTCTCTTGAATTACTTCCTG
1 TTCTTATCAGCTTCAGTCGTCCTCAGCTTTTTAGCAAGATCATTCTTCTCTTGAGCTACTTCCTG
7470578 CATCATTTAAGTTTT-ACCTCAGTA
66 CATCATTTAAGTTTTCACCTCAGTA
7470602 CGCTAAACAA
Statistics
Matches: 540, Mismatches: 24, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
476 10 0.02
477 529 0.98
478 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (477 bp):
TTCTTATCAGCTTCAGTCGTCCTCAGCTTTTTAGCAAGATCATTCTTCTCTTGAGCTACTTCCTG
CATCATTTAAGTTTTCACCTCAGTAAGATGACTCCTCAAAGGCAAAGGGCACTTGGAAACATTTT
ACAGCAAATAGAGGCTTTTGTCCTTCTGCGAAGATAATCTAGCAAGGACAACCAGGTCAGATGCA
AAACAAAATTGAACTGAATGTGAAGTTTTAGATTTACGGTAGAAAGAACCATTAACATAACTGAG
ACCCAGAGAAAGTAAGAAGAAACAAACCTGCAAACTATTCAACTTCACTTCCAGCTCATCATTAT
AGTTCTTACAGCGTCCAATTTCCTCTTCCTTCTCCTGTTTCTCTCTTTTGATCTGCCTAAGTTCT
TGCTTCAACATCTGGACTTCATTTGAAAGTGACTGTTGTTCTGCGTTTTGAGCTTCAACTTCTGT
TCTCAATTCTTCAACGAAGCTG
Found at i:7474438 original size:26 final size:26
Alignment explanation
Indices: 7474402--7474456 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
7474392 TATTATGACC
7474402 CATGCATTTAGGACATGTGTGCATCT
1 CATGCATTTAGGACATGTGTGCATCT
7474428 CATGCATTTAGGACATGTGTGCATCT
1 CATGCATTTAGGACATGTGTGCATCT
7474454 CAT
1 CAT
7474457 TAGCTTCCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.35
Consensus pattern (26 bp):
CATGCATTTAGGACATGTGTGCATCT
Found at i:7493841 original size:17 final size:18
Alignment explanation
Indices: 7493802--7493842 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
7493792 TTTTATAAAT
7493802 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGATA
7493820 TGTGAATTA-ATATTGA-A
1 TGTGAATTATAT-TTGATA
7493837 TGTGAA
1 TGTGAA
7493843 AGGAAAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.44
Consensus pattern (18 bp):
TGTGAATTATATTTGATA
Found at i:7504109 original size:44 final size:42
Alignment explanation
Indices: 7504046--7504194 Score: 124
Period size: 42 Copynumber: 3.5 Consensus size: 42
7504036 TGTGACATCA
* * *
7504046 TGTAAGACCACGTCTGGGACGTTGGCTTCG-ATTTTAGATTTACG
1 TGTAAGACCACGTCTGGGACATTGGCGTCGTA-TAT-GA-TTACG
7504090 TGTAAGACCATC-TCTGGGACATTGGCGTCGTATATGATTACG
1 TGTAAGACCA-CGTCTGGGACATTGGCGTCGTATATGATTACG
* * * * *
7504132 TGTAAGACC-CAGTCTGGGACAGTGGCATCGTTGTTTGATTACA
1 TGTAAGACCAC-GTCTGGGACATTGGCGTCG-TATATGATTACG
* * *
7504175 TGAAAGATCACGTCTAGGAC
1 TGTAAGACCACGTCTGGGAC
7504195 GTTGCAATTG
Statistics
Matches: 88, Mismatches: 11, Indels: 13
0.79 0.10 0.12
Matches are distributed among these distances:
40 1 0.01
42 30 0.34
43 26 0.30
44 29 0.33
45 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATTGGCGTCGTATATGATTACG
Found at i:7504148 original size:42 final size:45
Alignment explanation
Indices: 7504046--7504162 Score: 129
Period size: 42 Copynumber: 2.7 Consensus size: 45
7504036 TGTGACATCA
* * *
7504046 TGTAAGACCACGTCTGGGACGTTGGCTTCG-ATTTTAGATTTACG
1 TGTAAGACCACGTCTGGGACATTGGCATCGTATTATAGATTTACG
*
7504090 TGTAAGACCATC-TCTGGGACATTGGCGTCGTA-TAT-GA-TTACG
1 TGTAAGACCA-CGTCTGGGACATTGGCATCGTATTATAGATTTACG
*
7504132 TGTAAGACC-CAGTCTGGGACAGTGGCATCGT
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGT
7504163 TGTTTGATTA
Statistics
Matches: 64, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
40 1 0.02
42 31 0.48
43 2 0.03
44 28 0.44
45 2 0.03
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGTATTATAGATTTACG
Found at i:7505015 original size:22 final size:22
Alignment explanation
Indices: 7504981--7505257 Score: 311
Period size: 22 Copynumber: 12.6 Consensus size: 22
7504971 AAGTAAAAAT
7504981 TGTTGATTAAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * * *
7505003 TATTGATTGAATGTTGTCCAAT
1 TGTTGATTAAATGCTGTCCAAA
7505025 TGTTGATTAAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * * *
7505047 TATTGATTGAATGCTGTCTAAT
1 TGTTGATTAAATGCTGTCCAAA
7505069 TGTTGATTAAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
*
7505091 TGTTGATTTAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * *
7505113 TATTGATTGAATGCTGTCCAAT
1 TGTTGATTAAATGCTGTCCAAA
7505135 TGTTGATTAAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * * * * *
7505157 TATTGGTTGAATGTTGCCCAAT
1 TGTTGATTAAATGCTGTCCAAA
* * *
7505179 TGTTGATTAAATGTTATCTAAA
1 TGTTGATTAAATGCTGTCCAAA
* * *
7505201 TGTTGATTGAATGATGTCCAAT
1 TGTTGATTAAATGCTGTCCAAA
* *
7505223 TGTTGATTAAATGTTGTCTAAA
1 TGTTGATTAAATGCTGTCCAAA
*
7505245 TGTTAATTAAATG
1 TGTTGATTAAATG
7505258 ATATCTGAAT
Statistics
Matches: 209, Mismatches: 46, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 209 1.00
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.41
Consensus pattern (22 bp):
TGTTGATTAAATGCTGTCCAAA
Found at i:7505193 original size:11 final size:11
Alignment explanation
Indices: 7505179--7505257 Score: 65
Period size: 11 Copynumber: 7.2 Consensus size: 11
7505169 GTTGCCCAAT
7505179 TGTTGATTAAA
1 TGTTGATTAAA
7505190 TGTT-ATCTAAA
1 TGTTGAT-TAAA
*
7505201 TGTTGATTGAA
1 TGTTGATTAAA
* * *
7505212 TGATG-TCCAAT
1 TGTTGAT-TAAA
7505223 TGTTGATTAAA
1 TGTTGATTAAA
7505234 TGTTG-TCTAAA
1 TGTTGAT-TAAA
*
7505245 TGTTAATTAAA
1 TGTTGATTAAA
7505256 TG
1 TG
7505258 ATATCTGAAT
Statistics
Matches: 53, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
10 4 0.08
11 45 0.85
12 4 0.08
ACGTcount: A:0.33, C:0.05, G:0.18, T:0.44
Consensus pattern (11 bp):
TGTTGATTAAA
Found at i:7509988 original size:33 final size:34
Alignment explanation
Indices: 7509937--7510088 Score: 106
Period size: 33 Copynumber: 4.5 Consensus size: 34
7509927 TCCCCCAAGG
* *
7509937 GGTTACTAGGTGCTGATTCCCCG-ATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATTCATTGGT
* * *
7509970 GGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCG-A-ATT-CAT-T---GGT
*
7510012 GGTTGCTAAGTGCTGATTCCCC-----CA-AGG-
1 GGTTGCTAAGTGCTGATTCCCCGAATTCATTGGT
*
7510039 GGTTTCTAAGTGCTGATTCCCCGAATT-ATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATTCATTGGT
7510072 GGTTGCTAAGTGCTGAT
1 GGTTGCTAAGTGCTGAT
7510089 CCCACATTAT
Statistics
Matches: 93, Mismatches: 10, Indels: 32
0.69 0.07 0.24
Matches are distributed among these distances:
27 21 0.23
28 2 0.02
31 1 0.01
32 2 0.02
33 35 0.38
34 3 0.03
37 2 0.02
38 2 0.02
39 1 0.01
41 2 0.02
42 22 0.24
ACGTcount: A:0.19, C:0.18, G:0.28, T:0.34
Consensus pattern (34 bp):
GGTTGCTAAGTGCTGATTCCCCGAATTCATTGGT
Found at i:7510081 original size:102 final size:102
Alignment explanation
Indices: 7509905--7510133 Score: 370
Period size: 102 Copynumber: 2.2 Consensus size: 102
7509895 ATTGAATATA
* *
7509905 AAGGGGGTTGCTAAGTGCTAATTCCCCCAAGGGGTTACTAGGTGCTGATTCCCCGATTCATTGGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTACTAAGTGCTGATTCCCCGATTCATTGGT
* *
7509970 GGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTG
66 GGTTGCTAAGTGCTGATCCCACAGTATTTTAAATGTG
*
7510007 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTTCTAAGTGCTGATTCCCCGAATT-ATTGG
1 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTACTAAGTGCTGATTCCCCG-ATTCATTGG
*
7510071 TGGTTGCTAAGTGCTGATCCCACATTATTTTAAATGTG
65 TGGTTGCTAAGTGCTGATCCCACAGTATTTTAAATGTG
* *
7510109 AAAGGGGTTTCTAAGTGCTGATTCC
1 AAGGGGGTTGCTAAGTGCTGATTCC
7510134 ACCGTTTTTT
Statistics
Matches: 118, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
102 115 0.97
103 3 0.03
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.33
Consensus pattern (102 bp):
AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTACTAAGTGCTGATTCCCCGATTCATTGGT
GGTTGCTAAGTGCTGATCCCACAGTATTTTAAATGTG
Found at i:7510157 original size:43 final size:42
Alignment explanation
Indices: 7510072--7510176 Score: 138
Period size: 43 Copynumber: 2.5 Consensus size: 42
7510062 AATTATTGGT
* *
7510072 GGTTGCTAAGTGCTGATCCCACATTATTTTAAATGTGAAAGG
1 GGTTACTAAGTGCTGATTCCACATTATTTTAAATGTGAAAGG
* * * *
7510114 GGTTTCTAAGTGCTGATTCCACCGTTTTTTTGAATGTGAAAGG
1 GGTTACTAAGTGCTGATTCCA-CATTATTTTAAATGTGAAAGG
*
7510157 GGTTACTAAGTGTTGATTCC
1 GGTTACTAAGTGCTGATTCC
7510177 CCGAATCATT
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
42 19 0.35
43 36 0.65
ACGTcount: A:0.24, C:0.14, G:0.25, T:0.37
Consensus pattern (42 bp):
GGTTACTAAGTGCTGATTCCACATTATTTTAAATGTGAAAGG
Found at i:7517489 original size:102 final size:102
Alignment explanation
Indices: 7517313--7517541 Score: 352
Period size: 102 Copynumber: 2.2 Consensus size: 102
7517303 ATTGAATATA
* * ** *
7517313 AAGGGGGTTGCTAAGTGCTAATTCCCCCAATGGGTTGCTAAGTGCTGATTCCCTGATTCATTGGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCAAATCATTGGT
* *
7517378 GGTTTCTAAGTGCTGATTCCATC-GTATTTTAAATGTG
66 GGTTGCTAAGTGCTGATACCA-CAGTATTTTAAATGTG
7517415 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCAAATCATTGGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCAAATCATTGGT
*
7517480 GGTTGCTAAGTGCTGATACCACATTATTTTAAATGTG
66 GGTTGCTAAGTGCTGATACCACAGTATTTTAAATGTG
**
7517517 AAAAGGGTTGCTAAGTGCTGATTCC
1 AAGGGGGTTGCTAAGTGCTGATTCC
7517542 ACCATATTTT
Statistics
Matches: 116, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
101 1 0.01
102 115 0.99
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (102 bp):
AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCAAATCATTGGT
GGTTGCTAAGTGCTGATACCACAGTATTTTAAATGTG
Found at i:7517550 original size:42 final size:42
Alignment explanation
Indices: 7517480--7517583 Score: 158
Period size: 42 Copynumber: 2.5 Consensus size: 42
7517470 AATCATTGGT
*
7517480 GGTTGCTAAGTGCTGATACCACATTA-TTTTAAATGTGAAAAG
1 GGTTGCTAAGTGCTGATTCCACATTATTTTTAAATGTG-AAAG
*
7517522 GGTTGCTAAGTGCTGATTCCACCA-TATTTTTGAATGTGAAAG
1 GGTTGCTAAGTGCTGATTCCA-CATTATTTTTAAATGTGAAAG
7517564 GGTTGCTAAGTGCTGATTCC
1 GGTTGCTAAGTGCTGATTCC
7517584 CCGAATCACT
Statistics
Matches: 58, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
42 46 0.79
43 12 0.21
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (42 bp):
GGTTGCTAAGTGCTGATTCCACATTATTTTTAAATGTGAAAG
Found at i:7527982 original size:20 final size:20
Alignment explanation
Indices: 7527959--7528051 Score: 105
Period size: 20 Copynumber: 4.7 Consensus size: 20
7527949 TAAAAGGGGA
*
7527959 ACCGAAGTGCAAACATGGAC
1 ACCGAAGTGCAAACAAGGAC
* *
7527979 ACCGAAGTGTAAACAAGGGC
1 ACCGAAGTGCAAACAAGGAC
* *
7527999 ACCGGAGTGCAATCAAGGAC
1 ACCGAAGTGCAAACAAGGAC
* * * *
7528019 ACCAAAATGTAAACAAGGGC
1 ACCGAAGTGCAAACAAGGAC
7528039 ACCGAAGTGCAAA
1 ACCGAAGTGCAAA
7528052 AATATAGACA
Statistics
Matches: 57, Mismatches: 16, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 57 1.00
ACGTcount: A:0.42, C:0.23, G:0.26, T:0.10
Consensus pattern (20 bp):
ACCGAAGTGCAAACAAGGAC
Found at i:7528008 original size:40 final size:40
Alignment explanation
Indices: 7527959--7528051 Score: 141
Period size: 40 Copynumber: 2.3 Consensus size: 40
7527949 TAAAAGGGGA
* * *
7527959 ACCGAAGTGCAAACATGGACACCGAAGTGTAAACAAGGGC
1 ACCGAAGTGCAAACAAGGACACCAAAATGTAAACAAGGGC
* *
7527999 ACCGGAGTGCAATCAAGGACACCAAAATGTAAACAAGGGC
1 ACCGAAGTGCAAACAAGGACACCAAAATGTAAACAAGGGC
7528039 ACCGAAGTGCAAA
1 ACCGAAGTGCAAA
7528052 AATATAGACA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.42, C:0.23, G:0.26, T:0.10
Consensus pattern (40 bp):
ACCGAAGTGCAAACAAGGACACCAAAATGTAAACAAGGGC
Found at i:7531054 original size:31 final size:30
Alignment explanation
Indices: 7531003--7531063 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
7530993 TATAAATATT
7531003 TTTTTTTATAATTTGTATGT-ATTTGTATAA
1 TTTTTTTATAATTTGTATGTAATTT-TATAA
*
7531033 TTTTTTTATAATTTTTCATGTAATTTTATAA
1 TTTTTTTATAATTTGT-ATGTAATTTTATAA
7531064 AATATTGTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 15 0.54
31 9 0.32
32 4 0.14
ACGTcount: A:0.28, C:0.02, G:0.07, T:0.64
Consensus pattern (30 bp):
TTTTTTTATAATTTGTATGTAATTTTATAA
Found at i:7539124 original size:21 final size:21
Alignment explanation
Indices: 7539098--7539138 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7539088 ATCTGCTCAA
* *
7539098 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
7539119 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
7539139 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:7542369 original size:162 final size:162
Alignment explanation
Indices: 7542102--7542422 Score: 615
Period size: 162 Copynumber: 2.0 Consensus size: 162
7542092 TATAGAACAA
7542102 ATCTCTTTGGGTAAACTACACAAATGATCATTTAACTTTTACATACTTTTATCATTTTAGCCACT
1 ATCTCTTTGGGTAAACTACACAAATGATCATTTAACTTTTACATACTTTTATCATTTTAGCCACT
* *
7542167 CGTCATTAATTTGTCATTACATATACTCATTATGATCACCCAACTTTAGTAAATTTTCATTTTGG
66 CATCATTAATTTGTCATTACATACACTCATTATGATCACCCAACTTTAGTAAATTTTCATTTTGG
7542232 TCACTATTTTATATTTTTAATTTCCTTTAAAT
131 TCACTATTTTATATTTTTAATTTCCTTTAAAT
7542264 ATCTCTTTGGGTAAACTACACAAATGATCATTTAACTTTTACATACTTTTATCATTTTAGCCACT
1 ATCTCTTTGGGTAAACTACACAAATGATCATTTAACTTTTACATACTTTTATCATTTTAGCCACT
*
7542329 CATCATTAATTTGTCATTACATACACTCATTATGATCACCCAACTTTAGTAAGTTTTCATTTTGG
66 CATCATTAATTTGTCATTACATACACTCATTATGATCACCCAACTTTAGTAAATTTTCATTTTGG
7542394 TCACTATTTTATATTTTTAATTTCCTTTA
131 TCACTATTTTATATTTTTAATTTCCTTTA
7542423 GGTTTATTTT
Statistics
Matches: 156, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
162 156 1.00
ACGTcount: A:0.29, C:0.18, G:0.07, T:0.45
Consensus pattern (162 bp):
ATCTCTTTGGGTAAACTACACAAATGATCATTTAACTTTTACATACTTTTATCATTTTAGCCACT
CATCATTAATTTGTCATTACATACACTCATTATGATCACCCAACTTTAGTAAATTTTCATTTTGG
TCACTATTTTATATTTTTAATTTCCTTTAAAT
Found at i:7542854 original size:20 final size:20
Alignment explanation
Indices: 7542831--7542912 Score: 78
Period size: 20 Copynumber: 4.1 Consensus size: 20
7542821 AATTAATAAC
7542831 TTTATAAGAAATTCAGTAAT
1 TTTATAAGAAATTCAGTAAT
* *
7542851 TTTATAAGAAATTTAGTAAA
1 TTTATAAGAAATTCAGTAAT
*
7542871 ATT-TAAGAGAA-TCAGTAAT
1 TTTATAAGA-AATTCAGTAAT
* * *
7542890 TTTGTAAAAAAATTTAGTAAT
1 TTTAT-AAGAAATTCAGTAAT
7542911 TT
1 TT
7542913 ACAATGTTGT
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
19 13 0.26
20 25 0.50
21 12 0.24
ACGTcount: A:0.46, C:0.02, G:0.11, T:0.40
Consensus pattern (20 bp):
TTTATAAGAAATTCAGTAAT
Found at i:7544228 original size:19 final size:20
Alignment explanation
Indices: 7544191--7544228 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7544181 ACTAAGAGAT
7544191 TCAATAATTTTATAAGAAAA
1 TCAATAATTTTATAAGAAAA
*
7544211 TCAATCATTTTA-AAGAAA
1 TCAATAATTTTATAAGAAA
7544229 TTTAATAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.53, C:0.08, G:0.05, T:0.34
Consensus pattern (20 bp):
TCAATAATTTTATAAGAAAA
Found at i:7544279 original size:20 final size:20
Alignment explanation
Indices: 7544256--7544298 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
7544246 TATTCATTAC
* *
7544256 TTTTATAATAACTTCAGTAA
1 TTTTATAAAAAATTCAGTAA
* *
7544276 TTTTGTAAAAAATTCGGTAA
1 TTTTATAAAAAATTCAGTAA
7544296 TTT
1 TTT
7544299 AAAATATTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.07, G:0.09, T:0.47
Consensus pattern (20 bp):
TTTTATAAAAAATTCAGTAA
Found at i:7544424 original size:19 final size:18
Alignment explanation
Indices: 7544397--7544457 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 18
7544387 ATAGTTATTA
*
7544397 AAGAGATTTAGTAATTTTT
1 AAGAAATTTA-TAATTTTT
* *
7544416 AAGAAATTTATCATTTAT
1 AAGAAATTTATAATTTTT
7544434 AA-AAGATTTAATAATTTTGT
1 AAGAA-ATTT-ATAATTTT-T
7544454 AAGA
1 AAGA
7544458 GACTCGGTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
17 2 0.06
18 12 0.36
19 15 0.45
20 3 0.09
21 1 0.03
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (18 bp):
AAGAAATTTATAATTTTT
Found at i:7544895 original size:19 final size:19
Alignment explanation
Indices: 7544871--7544929 Score: 64
Period size: 19 Copynumber: 3.0 Consensus size: 19
7544861 TAAACATTAC
7544871 AAGAGATTCAATAATTTAT
1 AAGAGATTCAATAATTTAT
* *
7544890 AAGAGATTCAAATATTTTTGT
1 AAGAGATTC-AATA-ATTTAT
* *
7544911 AAAAAATTCAATAATTTAT
1 AAGAGATTCAATAATTTAT
7544930 GTTATAAGGA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
19 13 0.41
20 8 0.25
21 11 0.34
ACGTcount: A:0.47, C:0.05, G:0.08, T:0.39
Consensus pattern (19 bp):
AAGAGATTCAATAATTTAT
Found at i:7546310 original size:22 final size:21
Alignment explanation
Indices: 7546275--7546332 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 21
7546265 AAAGGGTATC
* *
7546275 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
7546296 TACAAAATCATATCTTCTAATAT
1 TAC-AAATCATATC-TCTAAGAT
* *
7546319 TGCATATCATATCT
1 TACAAATCATATCT
7546333 AAGATTGCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.57
23 9 0.30
ACGTcount: A:0.41, C:0.17, G:0.03, T:0.38
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:7565617 original size:341 final size:341
Alignment explanation
Indices: 7564981--7565660 Score: 1031
Period size: 341 Copynumber: 2.0 Consensus size: 341
7564971 CTAGAAATGC
*
7564981 ATGGTCATGCTCAAATAAGTTGATATGAGATATCACACTTATTTTTTTATTATAGTCTACTCAGA
1 ATGGTCATGCTCAAATAAGTTGATATGAGATATCACACTTATTTGTTTATTATAGTCTACTCAGA
* * *
7565046 ATATTAAGAAATATGAGATTGGACTATACAAGGGTGACTATGCTATGACTTGTGTCCAATTTAGA
66 ATATCAAGAAATATGAGATTGGACTATACAAGGGTGACTATACCATGACTTGTGTCCAATTTAGA
* **
7565111 TATAAAGGATAAAATGATATAATACATGAAAAGTTTATCACAGAAAGGTTATGCCAAATCATGAC
131 TATAAAGGATAAAATGATATAATAAATGAAAAGTTTATCACAGAAAGGTTATGCCAAATCACAAC
* *
7565176 TTCTTGTAACTTGAGTAGCAATGATGCATTGCTAGACGCCACTCATTGCTTGTAACATTAGAAAT
196 TTCTTGTAACTTGAGTAGCAATGATGCATTGCTAGACGCCACGCATTGCTTGAAACATTAGAAAT
* * *
7565241 GTTCTAGTTTTACCACCAACATTATAAGAACCTACAAGGCCACACCCTATGGTTAAAGCGAACAG
261 GTTCTAGTATTACCACCAACATTATAAGAACCTACAAGACCACACCCTATGGTTAAAGAGAACAG
*
7565306 ACTTTACACCAATATA
326 ACTTCACACCAATATA
* *
7565322 ATGGTCATGCTCAAATAAGTTGATATGAGATATCACACTTATTTGTTTATTGTAGTCTATTCAGA
1 ATGGTCATGCTCAAATAAGTTGATATGAGATATCACACTTATTTGTTTATTATAGTCTACTCAGA
* *
7565387 ATATCAAGAAATATGAGATTGTACTATACAAGTGTGACTATACCATGACTTGTGTCCAATTTAGA
66 ATATCAAGAAATATGAGATTGGACTATACAAGGGTGACTATACCATGACTTGTGTCCAATTTAGA
* * * * * *
7565452 TATAAATGATAAAATGATATAATAAAATGAAATA-TTTATTAGAGAAAGGTTATGTCGAATGACA
131 TATAAAGGATAAAATGATATAAT-AAATGAAA-AGTTTATCACAGAAAGGTTATGCCAAATCACA
* *
7565516 ACTTCTTGTAACTTGGGTAGCAATGATGTATTGCTAGACGCCACGCATTGCTTGAAACATTAGAA
194 ACTTCTTGTAACTTGAGTAGCAATGATGCATTGCTAGACGCCACGCATTGCTTGAAACATTAGAA
* ** * * * * *
7565581 ATGTTCTAGTATTACTACCAATGTTA-CAGGACCTACAAGATCACACCTTATGGTTAAAGAGAAT
259 ATGTTCTAGTATTACCACCAACATTATAAGAACCTACAAGACCACACCCTATGGTTAAAGAGAAC
7565645 AGACTTCACACCAATA
324 AGACTTCACACCAATA
7565661 GAATAGGAGT
Statistics
Matches: 304, Mismatches: 33, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
341 190 0.62
342 113 0.37
343 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (341 bp):
ATGGTCATGCTCAAATAAGTTGATATGAGATATCACACTTATTTGTTTATTATAGTCTACTCAGA
ATATCAAGAAATATGAGATTGGACTATACAAGGGTGACTATACCATGACTTGTGTCCAATTTAGA
TATAAAGGATAAAATGATATAATAAATGAAAAGTTTATCACAGAAAGGTTATGCCAAATCACAAC
TTCTTGTAACTTGAGTAGCAATGATGCATTGCTAGACGCCACGCATTGCTTGAAACATTAGAAAT
GTTCTAGTATTACCACCAACATTATAAGAACCTACAAGACCACACCCTATGGTTAAAGAGAACAG
ACTTCACACCAATATA
Found at i:7569510 original size:57 final size:57
Alignment explanation
Indices: 7569385--7569492 Score: 198
Period size: 57 Copynumber: 1.9 Consensus size: 57
7569375 AGAGTTTTAT
* *
7569385 GTTAATTAATCATACCTCCACTTGCTAATCCCCCACAGTAGGATTAGTTGCAAAATA
1 GTTAATTAATCATACCTCCACTCGCTAATCCCCCACAGGAGGATTAGTTGCAAAATA
7569442 GTTAATTAATCATACCTCCACTCGCTAATCCCCCACAGGAGGATTAGTTGC
1 GTTAATTAATCATACCTCCACTCGCTAATCCCCCACAGGAGGATTAGTTGC
7569493 TCATGGATCT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.29
Consensus pattern (57 bp):
GTTAATTAATCATACCTCCACTCGCTAATCCCCCACAGGAGGATTAGTTGCAAAATA
Found at i:7569773 original size:61 final size:61
Alignment explanation
Indices: 7569698--7569819 Score: 235
Period size: 61 Copynumber: 2.0 Consensus size: 61
7569688 GAAAAGAGAA
7569698 AAACTAAATACTAGATCTAAAGAGAAAATTATAGAATATGAAAAATTTCCATAACATGTGC
1 AAACTAAATACTAGATCTAAAGAGAAAATTATAGAATATGAAAAATTTCCATAACATGTGC
*
7569759 AAACTAAATACTAGATCTAAAGAGAAAATTGTAGAATATGAAAAATTTCCATAACATGTGC
1 AAACTAAATACTAGATCTAAAGAGAAAATTATAGAATATGAAAAATTTCCATAACATGTGC
7569820 TAAGTGAGCC
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.50, C:0.11, G:0.12, T:0.26
Consensus pattern (61 bp):
AAACTAAATACTAGATCTAAAGAGAAAATTATAGAATATGAAAAATTTCCATAACATGTGC
Found at i:7577062 original size:60 final size:60
Alignment explanation
Indices: 7576981--7577104 Score: 160
Period size: 60 Copynumber: 2.1 Consensus size: 60
7576971 TGAGTATTCC
* * * * *
7576981 AAGG-ATCGAACCCCAATGAGTCGGCGATTTAATTATTCATTCTCGACAAACATGCAATG
1 AAGGAATCAAACCCAAAGGAGTCAGCGATTTAATGATTCATTCTCGACAAACATGCAATG
* * * *
7577040 AAGGAATCAAACCCAAAGGAGTCAGTGATTTAATGATTCCTTCTCGACAAGCATGGAATG
1 AAGGAATCAAACCCAAAGGAGTCAGCGATTTAATGATTCATTCTCGACAAACATGCAATG
7577100 AAGGA
1 AAGGA
7577105 GTCTAACTAG
Statistics
Matches: 55, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
59 4 0.07
60 51 0.93
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.23
Consensus pattern (60 bp):
AAGGAATCAAACCCAAAGGAGTCAGCGATTTAATGATTCATTCTCGACAAACATGCAATG
Found at i:7584957 original size:25 final size:28
Alignment explanation
Indices: 7584929--7584979 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
7584919 GTGATTAACT
7584929 CGCTTT-GG-TAATCTTC-ATCAACTGC
1 CGCTTTGGGTTAATCTTCAATCAACTGC
*
7584954 CGCTTTGGGTTCATCTTCAATCAACT
1 CGCTTTGGGTTAATCTTCAATCAACT
7584980 AGTCGATATC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 6 0.27
26 2 0.09
27 7 0.32
28 7 0.32
ACGTcount: A:0.20, C:0.27, G:0.16, T:0.37
Consensus pattern (28 bp):
CGCTTTGGGTTAATCTTCAATCAACTGC
Found at i:7589032 original size:13 final size:13
Alignment explanation
Indices: 7589007--7589040 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
7588997 AATGTTGGAC
7589007 TATTATTTTTATT
1 TATTATTTTTATT
7589020 TATT-TTTTGTATT
1 TATTATTTT-TATT
7589033 TATTATTT
1 TATTATTT
7589041 AGTTTGGGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.21
13 12 0.63
14 3 0.16
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (13 bp):
TATTATTTTTATT
Found at i:7589484 original size:44 final size:44
Alignment explanation
Indices: 7589382--7589675 Score: 140
Period size: 44 Copynumber: 6.5 Consensus size: 44
7589372 GTCTATTCCA
* * * *
7589382 CTGTAATCTCAGGGAGATAAGA-CC-TGATGC--GATCTACTCTA
1 CTGTAATCTCAGGGAGATAAGATCCTTTAT-CTTAATCTGCTCTG
** *
7589423 CTGTAA-CTTCAAAGAGATAAGATCCTTTATCTTAATCCGCTCTG
1 CTGTAATC-TCAGGGAGATAAGATCCTTTATCTTAATCTGCTCTG
* * * *
7589467 CTGTAATCTCAGGGAGATAGGAT--TACTAGCTTCAATCTGCTCCG
1 CTGTAATCTCAGGGAGATAAGATCCT-TTATCTT-AATCTGCTCTG
* * * *
7589511 CTGTAATCTCAGAGAGATAAGATTTCTGGCTTCAATCTGATACGATCTACTCTA
1 CTGTAATCTCAGGGAGATAAGA--TC---CTT-TATCT--TA--ATCTGCTCTG
* * * *
7589565 CTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCTA
1 CTGTAATC-TCAGGGAGATAAGATCCTTTATCTTAATCTGCTCTG
* * * * *
7589609 CTGTAATCTCAGGGAGATAGGAT--TACTAGCTTCCATCTGCTCCG
1 CTGTAATCTCAGGGAGATAAGATCCT-TTATCTT-AATCTGCTCTG
*
7589653 CTGTAATCTCAGGGGGATAAGAT
1 CTGTAATCTCAGGGAGATAAGAT
7589676 TTCTAGCTTC
Statistics
Matches: 192, Mismatches: 37, Indels: 45
0.70 0.14 0.16
Matches are distributed among these distances:
40 1 0.01
41 18 0.09
42 5 0.03
43 12 0.06
44 109 0.57
45 2 0.01
46 3 0.02
48 3 0.02
49 3 0.02
51 4 0.02
52 3 0.02
53 2 0.01
54 27 0.14
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (44 bp):
CTGTAATCTCAGGGAGATAAGATCCTTTATCTTAATCTGCTCTG
Found at i:7589661 original size:142 final size:142
Alignment explanation
Indices: 7589405--7589972 Score: 949
Period size: 142 Copynumber: 4.0 Consensus size: 142
7589395 GAGATAAGAC
* * *
7589405 CTGATGCGATCTACTCTACTGTAACTTCAAAGAGATAAGATCCTTTATCTTAATCCGCTCTGCTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCTACTG
* *
7589470 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGAGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCTATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
*
7589535 TCTGGCTTCAAT
131 TCTAGCTTCAAT
*
7589547 CTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCTACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCTACTG
* *
7589612 TAATCTCAGGGAGATAGGATTACTAGCTTCCATCTGCTCCGCTGTAATCTCAGGGGGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCTATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
7589677 TCTAGCTTCAAT
131 TCTAGCTTCAAT
* * *
7589689 CTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACT-
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCTACTG
* *
7589753 TAATCTCAGGGAGATAGGATTACTAGCTTCTATCTGTTCCGCTGTAATCTCAGGAAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCTATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
7589818 TCTAGCTTCAAT
131 TCTAGCTTCAAT
* * *
7589830 CTGATGTGATCTACTTTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCTACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCTACTG
* *
7589895 TAATCTCAGGGAGATAGGATTACTAGCTTTTATCTGCTCCGCTGTAATCTCAGGGAGATAATATT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCTATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
*
7589960 TCTGGCTTCAAT
131 TCTAGCTTCAAT
7589972 C
1 C
7589973 CGCTTCCTTA
Statistics
Matches: 398, Mismatches: 27, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
141 131 0.33
142 267 0.67
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (142 bp):
CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCTACTG
TAATCTCAGGGAGATAGGATTACTAGCTTCTATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
TCTAGCTTCAAT
Found at i:7589913 original size:283 final size:284
Alignment explanation
Indices: 7589405--7589972 Score: 951
Period size: 283 Copynumber: 2.0 Consensus size: 284
7589395 GAGATAAGAC
* * **
7589405 CTGATGCGATCTACTCTACTGTAACTTCAAAGAGATAAGATCCTTTATCTTAATCCGCTCTGCTG
1 CTGATGCGATCTACTCTACTATAACTTCAAAGAGATAAGATCATTTATCTTAATCCGCTCCACTG
7589470 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGAGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGAGAGATAAGATT
*
7589535 TCTGGCTTCAATCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAA
131 TCTAGCTTCAATCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAA
*
7589600 TCCGCTCTACTGTAATCTCAGGGAGATAGGATTACTAGCTTCCATCTGCTCCGCTGTAATCTCAG
196 TCCACTCTACTGTAATCTCAGGGAGATAGGATTACTAGCTTCCATCTGCTCCGCTGTAATCTCAG
*
7589665 GGGGATAAGATTTCTAGCTTCAAT
261 GGAGATAAGATTTCTAGCTTCAAT
* *
7589689 CTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACT-
1 CTGATGCGATCTACTCTACTATAACTTCAAAGAGATAAGATCATTTATCTTAATCCGCTCCACTG
* *
7589753 TAATCTCAGGGAGATAGGATTACTAGCTTCTATCTGTTCCGCTGTAATCTCAG-GAAGATAAGAT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGAG-AGATAAGAT
** *
7589817 TTCTAGCTTCAATCTGATGTGATCTACTTTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
130 TTCTAGCTTCAATCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
**
7589882 ATCCACTCTACTGTAATCTCAGGGAGATAGGATTACTAGCTTTTATCTGCTCCGCTGTAATCTCA
195 ATCCACTCTACTGTAATCTCAGGGAGATAGGATTACTAGCTTCCATCTGCTCCGCTGTAATCTCA
* *
7589947 GGGAGATAATATTTCTGGCTTCAAT
260 GGGAGATAAGATTTCTAGCTTCAAT
7589972 C
1 C
7589973 CGCTTCCTTA
Statistics
Matches: 265, Mismatches: 18, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
282 1 0.00
283 206 0.78
284 58 0.22
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (284 bp):
CTGATGCGATCTACTCTACTATAACTTCAAAGAGATAAGATCATTTATCTTAATCCGCTCCACTG
TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGAGAGATAAGATT
TCTAGCTTCAATCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAA
TCCACTCTACTGTAATCTCAGGGAGATAGGATTACTAGCTTCCATCTGCTCCGCTGTAATCTCAG
GGAGATAAGATTTCTAGCTTCAAT
Found at i:7593163 original size:51 final size:51
Alignment explanation
Indices: 7593103--7593297 Score: 234
Period size: 51 Copynumber: 3.8 Consensus size: 51
7593093 CATGAGAACT
* ***
7593103 CATGTGTAGTACTATGTGTAGGCTACTATGAGTATAAGATAGTTATGGTCA
1 CATGTGTAGTACTATGTGTAGGCTACTATGTGTACCGGATAGTTATGGTCA
* *
7593154 CATGTGTAGTACTAAGTGTTGGCTACTATGTGTACCGGATAGCTT-TGGTCA
1 CATGTGTAGTACTATGTGTAGGCTACTATGTGTACCGGATAG-TTATGGTCA
* * * * *
7593205 CGTGTGTAGTATTATGTGCAGGCTACTACGTGTACCGGAT-GGTATTGGTCA
1 CATGTGTAGTACTATGTGTAGGCTACTATGTGTACCGGATAGTTA-TGGTCA
*
7593256 CATGTGTAGTACTCA-GTGTAGGCTATTATGTGTACCGGATAG
1 CATGTGTAGTACT-ATGTGTAGGCTACTATGTGTACCGGATAG
7593298 CATTGATCAT
Statistics
Matches: 121, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
49 1 0.01
50 1 0.01
51 115 0.95
52 4 0.03
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (51 bp):
CATGTGTAGTACTATGTGTAGGCTACTATGTGTACCGGATAGTTATGGTCA
Found at i:7599780 original size:51 final size:51
Alignment explanation
Indices: 7599688--7599882 Score: 173
Period size: 51 Copynumber: 3.8 Consensus size: 51
7599678 CATGAGAACT
* * ***
7599688 CATGTGTAGTACTATGTG-TAGGCTACTATGAGTATAAGATAGTTATGGTCA
1 CATGTGTAGTACTAAGTGCT-GGCTACTATGTGTACCGGATAGTTATGGTCA
* * *
7599739 CATGTGTAATACTAAATGCTGGCTATTATGTGTACCGGATAGCTT-TGGTCA
1 CATGTGTAGTACTAAGTGCTGGCTACTATGTGTACCGGATAG-TTATGGTCA
* * * * * * *
7599790 CGTGTGTAGTACTATGTGCAGCCTACTACGTGTACCGGAT-GGTATTAGTCA
1 CATGTGTAGTACTAAGTGCTGGCTACTATGTGTACCGGATAGTTA-TGGTCA
* *
7599841 CATGTGTAGTACTCAGTG-TAGGCTACTATGTGTACTGGATAG
1 CATGTGTAGTACTAAGTGCT-GGCTACTATGTGTACCGGATAG
7599883 AATTGATCAC
Statistics
Matches: 113, Mismatches: 25, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
49 1 0.01
50 1 0.01
51 107 0.95
52 4 0.04
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (51 bp):
CATGTGTAGTACTAAGTGCTGGCTACTATGTGTACCGGATAGTTATGGTCA
Found at i:7605918 original size:27 final size:27
Alignment explanation
Indices: 7605896--7606124 Score: 225
Period size: 27 Copynumber: 8.4 Consensus size: 27
7605886 AAGGGTATAA
*
7605896 TAGTTATTTTACCCTATGGGGGTATTT
1 TAGTCATTTTACCCTATGGGGGTATTT
7605923 CTA-TCATTTTACCCTATGGGGGTATTT
1 -TAGTCATTTTACCCTATGGGGGTATTT
* * *
7605950 TGGTCATTTTACCTTATAGGGGTATTT
1 TAGTCATTTTACCCTATGGGGGTATTT
*
7605977 T-GATCATTTTACCCTATAGGGGTATTT
1 TAG-TCATTTTACCCTATGGGGGTATTT
* *
7606004 TGGTCATTTTACCTTATGGGGGTA-TT
1 TAGTCATTTTACCCTATGGGGGTATTT
* *
7606030 TCGATCATTTTATCCTATGGGGGTA-TT
1 TAG-TCATTTTACCCTATGGGGGTATTT
* *
7606057 TCGATCATTTTACCTTATTGGGGGTA-TT
1 TAG-TCATTTTACCCTA-TGGGGGTATTT
* * *
7606085 TAGGTCATTTTACCATATAGGGATATTT
1 TA-GTCATTTTACCCTATGGGGGTATTT
* *
7606113 TGGTTATTTTAC
1 TAGTCATTTTAC
7606125 ATATTTTAGG
Statistics
Matches: 176, Mismatches: 18, Indels: 15
0.84 0.09 0.07
Matches are distributed among these distances:
26 6 0.03
27 140 0.80
28 29 0.16
29 1 0.01
ACGTcount: A:0.20, C:0.13, G:0.21, T:0.46
Consensus pattern (27 bp):
TAGTCATTTTACCCTATGGGGGTATTT
Done.