Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 26 of 207
Found at i:7605959 original size:54 final size:54
Alignment explanation
Indices: 7605901--7606124 Score: 313
Period size: 54 Copynumber: 4.1 Consensus size: 54
7605891 TATAATAGTT
* * *
7605901 ATTTTACCCTATGGGGGTATTTCTATCATTTTACCCTATGGGGGTATTTTGGTC
1 ATTTTACCTTATGGGGGTATTTCGATCATTTTACCCTATAGGGGTATTTTGGTC
* *
7605955 ATTTTACCTTATAGGGGTATTTTGATCATTTTACCCTATAGGGGTATTTTGGTC
1 ATTTTACCTTATGGGGGTATTTCGATCATTTTACCCTATAGGGGTATTTTGGTC
* * * *
7606009 ATTTTACCTTATGGGGGTATTTCGATCATTTTATCCTATGGGGGTATTTCGATC
1 ATTTTACCTTATGGGGGTATTTCGATCATTTTACCCTATAGGGGTATTTTGGTC
* * * * *
7606063 ATTTTACCTTATTGGGGGTATTTAGGTCATTTTACCATATAGGGATATTTTGGTT
1 ATTTTACCTTA-TGGGGGTATTTCGATCATTTTACCCTATAGGGGTATTTTGGTC
7606118 ATTTTAC
1 ATTTTAC
7606125 ATATTTTAGG
Statistics
Matches: 149, Mismatches: 20, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
54 108 0.72
55 41 0.28
ACGTcount: A:0.20, C:0.13, G:0.21, T:0.46
Consensus pattern (54 bp):
ATTTTACCTTATGGGGGTATTTCGATCATTTTACCCTATAGGGGTATTTTGGTC
Found at i:7606011 original size:81 final size:80
Alignment explanation
Indices: 7605901--7606124 Score: 288
Period size: 81 Copynumber: 2.8 Consensus size: 80
7605891 TATAATAGTT
* *
7605901 ATTTTACCCTATGGGGGTATTTCT-ATCATTTTACCCTATGGGGGTATTTTGGTCATTTTACCTT
1 ATTTTACCCTATGGGGGTATTT-TGGTCATTTTACCATATGGGGGTATTTTGGTCATTTTACC-T
*
7605965 ATAGGGGTATTTTGATC
64 ATAGGGGTATTTCGATC
* * * *
7605982 ATTTTACCCTATAGGGGTATTTTGGTCATTTTACCTTATGGGGGTATTTCGATCATTTTATCCTA
1 ATTTTACCCTATGGGGGTATTTTGGTCATTTTACCATATGGGGGTATTTTGGTCATTTTA-CCTA
*
7606047 TGGGGGTATTTCGATC
65 TAGGGGTATTTCGATC
* * * * *
7606063 ATTTTACCTTATTGGGGGTATTTAGGTCATTTTACCATATAGGGATATTTTGGTTATTTTAC
1 ATTTTACCCTA-TGGGGGTATTTTGGTCATTTTACCATATGGGGGTATTTTGGTCATTTTAC
7606125 ATATTTTAGG
Statistics
Matches: 124, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
80 1 0.01
81 80 0.65
82 43 0.35
ACGTcount: A:0.20, C:0.13, G:0.21, T:0.46
Consensus pattern (80 bp):
ATTTTACCCTATGGGGGTATTTTGGTCATTTTACCATATGGGGGTATTTTGGTCATTTTACCTAT
AGGGGTATTTCGATC
Found at i:7626320 original size:31 final size:32
Alignment explanation
Indices: 7626282--7626341 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 32
7626272 GTGGTTATTG
7626282 AACTATTTGAAAGTATTCA-TTTAAGTCACTA
1 AACTATTTGAAAGTATTCATTTTAAGTCACTA
* *
7626313 AACTATTTGAAAGTTTTTATTTTAAGTCA
1 AACTATTTGAAAGTATTCATTTTAAGTCA
7626342 ATGGACTGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 17 0.65
32 9 0.35
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.43
Consensus pattern (32 bp):
AACTATTTGAAAGTATTCATTTTAAGTCACTA
Found at i:7637435 original size:18 final size:18
Alignment explanation
Indices: 7637366--7637435 Score: 70
Period size: 18 Copynumber: 3.8 Consensus size: 18
7637356 ATCTTATGTT
*
7637366 AATTTCAAATCGTGTCATTC
1 AATTTCAAAACGT-T-ATTC
* *
7637386 ATTTTCAAAACATTATTC
1 AATTTCAAAACGTTATTC
*
7637404 -ATTTACAAATCGTTATTC
1 AATTT-CAAAACGTTATTC
7637422 AATTTCAAAACGTT
1 AATTTCAAAACGTT
7637436 TTTTTATTGT
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
17 3 0.07
18 23 0.56
19 5 0.12
20 10 0.24
ACGTcount: A:0.36, C:0.17, G:0.06, T:0.41
Consensus pattern (18 bp):
AATTTCAAAACGTTATTC
Found at i:7640896 original size:44 final size:44
Alignment explanation
Indices: 7640848--7640956 Score: 148
Period size: 44 Copynumber: 2.5 Consensus size: 44
7640838 ATATCTCAAG
*
7640848 GTCCATGTTTATAACATGGCAATTAA-AGAAGAATTGACGGAAAA
1 GTCCATGTTTATAACATGGCAATTAAGA-AAGAATTGACAGAAAA
*
7640892 GTCCATGTTTATAACATGGCAATTAAGAAAGAATTTACAGAAAA
1 GTCCATGTTTATAACATGGCAATTAAGAAAGAATTGACAGAAAA
* * * *
7640936 GACCATGGTTAGACCATGGCA
1 GTCCATGTTTATAACATGGCA
7640957 GTAAGTGTGC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 57 0.98
45 1 0.02
ACGTcount: A:0.41, C:0.14, G:0.20, T:0.25
Consensus pattern (44 bp):
GTCCATGTTTATAACATGGCAATTAAGAAAGAATTGACAGAAAA
Found at i:7641022 original size:50 final size:49
Alignment explanation
Indices: 7640967--7641149 Score: 244
Period size: 50 Copynumber: 3.7 Consensus size: 49
7640957 GTAAGTGTGC
7640967 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACCGAGGAGTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGA-CGAGGAGTGT
* * * **
7641017 TAGTGTAAGACCATGTTTGGGACATGGCATCGGCACAGACAGAGAAAAGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAC-GAGGAGTGT
* * * *
7641067 CAGTGTAAGACCATGTCTGGGACATGACATCGGCTCA-A-GATGAGTGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACGAGGAGTGT
*
7641114 CAGTGTAAGACCATGTCTGGGACATAGCATCGGCAC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
7641150 CGATATGTGA
Statistics
Matches: 115, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
47 37 0.32
49 2 0.02
50 76 0.66
ACGTcount: A:0.29, C:0.21, G:0.31, T:0.20
Consensus pattern (49 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACGAGGAGTGT
Found at i:7641144 original size:97 final size:99
Alignment explanation
Indices: 7640967--7641149 Score: 280
Period size: 97 Copynumber: 1.9 Consensus size: 99
7640957 GTAAGTGTGC
* **
7640967 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACCGAGGAGTGTTAGTGTAAGACCATG
1 CAGTGTAAGACCATGTCTGGGACATGACATCGGCACAGA-CGAGGAGTGCCAGTGTAAGACCATG
* *
7641032 TTTGGGACATGGCATCGGCACAGACAGAGAAAAGT
65 TCTGGGACATAGCATCGGCACAGACAGAGAAAAGT
* *
7641067 CAGTGTAAGACCATGTCTGGGACATGACATCGGCTCA-A-GATGAGTGCCAGTGTAAGACCATGT
1 CAGTGTAAGACCATGTCTGGGACATGACATCGGCACAGACGAGGAGTGCCAGTGTAAGACCATGT
7641130 CTGGGACATAGCATCGGCAC
66 CTGGGACATAGCATCGGCAC
7641150 CGATATGTGA
Statistics
Matches: 76, Mismatches: 7, Indels: 3
0.88 0.08 0.03
Matches are distributed among these distances:
97 40 0.53
99 1 0.01
100 35 0.46
ACGTcount: A:0.29, C:0.21, G:0.31, T:0.20
Consensus pattern (99 bp):
CAGTGTAAGACCATGTCTGGGACATGACATCGGCACAGACGAGGAGTGCCAGTGTAAGACCATGT
CTGGGACATAGCATCGGCACAGACAGAGAAAAGT
Found at i:7644203 original size:21 final size:20
Alignment explanation
Indices: 7644169--7644214 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 20
7644159 AAAAAAACAG
7644169 AAAAAAGCAAAAAGCGCAAA
1 AAAAAAGCAAAAAGCGCAAA
*
7644189 AAAAGAAGGAAAAAGCGCAAA
1 AAAA-AAGCAAAAAGCGCAAA
7644210 AAAAA
1 AAAAA
7644215 GTTGTCTACC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 5 0.21
21 19 0.79
ACGTcount: A:0.72, C:0.11, G:0.17, T:0.00
Consensus pattern (20 bp):
AAAAAAGCAAAAAGCGCAAA
Found at i:7644270 original size:6 final size:6
Alignment explanation
Indices: 7644259--7644299 Score: 82
Period size: 6 Copynumber: 6.8 Consensus size: 6
7644249 CCTATTATTG
7644259 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
7644300 CACAAAATTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:7653666 original size:25 final size:26
Alignment explanation
Indices: 7653636--7653693 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 26
7653626 AGACAAAATA
*
7653636 TAATCCTAACTTCTTAACTTAAG-TC
1 TAATCCTAACTTCTAAACTTAAGTTC
* *
7653661 TAATCCAAATTTCTAAACTTAAGTTC
1 TAATCCTAACTTCTAAACTTAAGTTC
7653687 TAATCCT
1 TAATCCT
7653694 GGTCTAGTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 20 0.71
26 8 0.29
ACGTcount: A:0.34, C:0.22, G:0.03, T:0.40
Consensus pattern (26 bp):
TAATCCTAACTTCTAAACTTAAGTTC
Found at i:7655458 original size:22 final size:22
Alignment explanation
Indices: 7655410--7655455 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
7655400 TTTGTATGGC
*
7655410 ATTATAAGCATCATAATAATCT
1 ATTATAAGAATCATAATAATCT
7655432 ATTATAAGAAT-ATATATAAT-T
1 ATTATAAGAATCATA-ATAATCT
7655453 ATT
1 ATT
7655456 TATTTGTCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.48, C:0.07, G:0.04, T:0.41
Consensus pattern (22 bp):
ATTATAAGAATCATAATAATCT
Found at i:7662238 original size:13 final size:13
Alignment explanation
Indices: 7662220--7662244 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7662210 GTCAATTTGA
7662220 TATTACTTATCCG
1 TATTACTTATCCG
7662233 TATTACTTATCC
1 TATTACTTATCC
7662245 ATGTAAAGCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.04, T:0.48
Consensus pattern (13 bp):
TATTACTTATCCG
Found at i:7664995 original size:18 final size:18
Alignment explanation
Indices: 7664961--7665009 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
7664951 CAATAAAAAG
7664961 AACGTTTGGAAATTGAAT
1 AACGTTTGGAAATTGAAT
*
7664979 AACGATTTGTAAA-TGAAT
1 AACG-TTTGGAAATTGAAT
*
7664997 AATGTTTTGGAAA
1 AACG-TTTGGAAA
7665010 CGAACGACAC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
18 19 0.73
19 7 0.27
ACGTcount: A:0.41, C:0.04, G:0.20, T:0.35
Consensus pattern (18 bp):
AACGTTTGGAAATTGAAT
Found at i:7670700 original size:63 final size:63
Alignment explanation
Indices: 7670595--7670866 Score: 217
Period size: 63 Copynumber: 4.3 Consensus size: 63
7670585 GTCTTGTGCT
* * * * * *
7670595 AGGCCGTGTGACTCACTATTTTCTATTAAGGACCATACGGGCCAAGGACACGGGCATGTGTCC
1 AGGCCGTGTGACTCACTGTTTGCCATTAAGGACCACACGAGCCAAGGACACAGGCATGTGTCC
* * * * ** * * *
7670658 AGGCTGTGTGACTTACTGTTTGCCATTAAGGACCACATGGGCCGGGGACACAGACATCTGCCC
1 AGGCCGTGTGACTCACTGTTTGCCATTAAGGACCACACGAGCCAAGGACACAGGCATGTGTCC
* * * * * * * * * *
7670721 AGGTCGTGTAAGTCACTGTTTTCCATTAAAGACCATACGAACCAAGGACACGGGCGTGCGTCC
1 AGGCCGTGTGACTCACTGTTTGCCATTAAGGACCACACGAGCCAAGGACACAGGCATGTGTCC
* * * ** *
7670784 ATGCCCTGTGACTCAATGTTTGCCATTTTGGACCACATGAGCC-AGAGACACAGG--TGTGTTCC
1 AGGCCGTGTGACTCACTGTTTGCCATTAAGGACCACACGAGCCAAG-GACACAGGCATGTG-TCC
*
7670846 AGGCCATGTGACTCACTGTTT
1 AGGCCGTGTGACTCACTGTTT
7670867 ATAATTCAGG
Statistics
Matches: 157, Mismatches: 50, Indels: 5
0.74 0.24 0.02
Matches are distributed among these distances:
61 3 0.02
62 23 0.15
63 131 0.83
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.25
Consensus pattern (63 bp):
AGGCCGTGTGACTCACTGTTTGCCATTAAGGACCACACGAGCCAAGGACACAGGCATGTGTCC
Found at i:7670834 original size:126 final size:126
Alignment explanation
Indices: 7670607--7670836 Score: 307
Period size: 126 Copynumber: 1.8 Consensus size: 126
7670597 GCCGTGTGAC
* * ** * ** *
7670607 TCACTATTTTCTATTAAGGACCATACGGGCCAAGGACACGGGCATGTGTCCAGGCTGTGTGACTT
1 TCACTATTTTCCATTAAAGACCATACGAACCAAGGACACGGGCATGCGTCCAGGCCCTGTGACTC
* * * *
7670672 ACTGTTTGCCATTAAGGACCACATGGGCCGGGGACACAGACATCTGCCCAGGTCGTGTAAG
66 AATGTTTGCCATTAAGGACCACATGAGCCAGAGACACAGACATCTGCCCAGGTCGTGTAAG
* * *
7670733 TCACTGTTTTCCATTAAAGACCATACGAACCAAGGACACGGGCGTGCGTCCATGCCCTGTGACTC
1 TCACTATTTTCCATTAAAGACCATACGAACCAAGGACACGGGCATGCGTCCAGGCCCTGTGACTC
**
7670798 AATGTTTGCCATTTTGGACCACATGAGCCAGAGACACAG
66 AATGTTTGCCATTAAGGACCACATGAGCCAGAGACACAG
7670837 GTGTGTTCCA
Statistics
Matches: 87, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
126 87 1.00
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.23
Consensus pattern (126 bp):
TCACTATTTTCCATTAAAGACCATACGAACCAAGGACACGGGCATGCGTCCAGGCCCTGTGACTC
AATGTTTGCCATTAAGGACCACATGAGCCAGAGACACAGACATCTGCCCAGGTCGTGTAAG
Found at i:7679517 original size:21 final size:22
Alignment explanation
Indices: 7679492--7679532 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
7679482 TTTTCTATAG
7679492 TCTTTTCCA-TTAT-TTTTATTA
1 TCTTTT-CATTTATCTTTTATTA
7679513 TCTTTTCATTTATCTTTTAT
1 TCTTTTCATTTATCTTTTAT
7679533 GTTTATTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 2 0.11
21 10 0.56
22 6 0.33
ACGTcount: A:0.17, C:0.15, G:0.00, T:0.68
Consensus pattern (22 bp):
TCTTTTCATTTATCTTTTATTA
Found at i:7681717 original size:45 final size:45
Alignment explanation
Indices: 7681662--7681807 Score: 147
Period size: 45 Copynumber: 3.3 Consensus size: 45
7681652 CACTGGGCTA
* *
7681662 TGGATACACAACAAAATTTTGTAAATAAAAACTGCCATTGGGTTG
1 TGGATGCACAACAAAATTTTGTAGATAAAAACTGCCATTGGGTTG
*** *
7681707 TGGATGCACAACAAAATTTAACAGATAAAATCTGCCACTT-GGTTG
1 TGGATGCACAACAAAATTTTGTAGATAAAAACTGCCA-TTGGGTTG
* * ** *
7681752 TGGATGCAGAAC---ATGTTTGTAGGTAAAAGTTGTCATTGGGTTG
1 TGGATGCACAACAAAAT-TTTGTAGATAAAAACTGCCATTGGGTTG
7681795 TGGATGCACAACA
1 TGGATGCACAACA
7681808 TATTTGCAGT
Statistics
Matches: 82, Mismatches: 15, Indels: 9
0.77 0.14 0.08
Matches are distributed among these distances:
42 4 0.05
43 29 0.35
45 47 0.57
46 2 0.02
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.29
Consensus pattern (45 bp):
TGGATGCACAACAAAATTTTGTAGATAAAAACTGCCATTGGGTTG
Found at i:7681986 original size:15 final size:15
Alignment explanation
Indices: 7681931--7681987 Score: 69
Period size: 15 Copynumber: 3.5 Consensus size: 15
7681921 GCTTATAATA
7681931 AATCAATACGGTAGC
1 AATCAATACGGTAGC
*
7681946 AATTAATATGCGTGTAGC
1 AATCAATA--CG-GTAGC
7681964 AGATCAATACGGTAGC
1 A-ATCAATACGGTAGC
7681980 AATCAATA
1 AATCAATA
7681988 TGCTTATAAC
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
15 14 0.39
16 6 0.17
17 4 0.11
18 6 0.17
19 6 0.17
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.25
Consensus pattern (15 bp):
AATCAATACGGTAGC
Found at i:7682005 original size:19 final size:19
Alignment explanation
Indices: 7681981--7682040 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
7681971 TACGGTAGCA
7681981 ATCAATATGCTTATAACAG
1 ATCAATATGCTTATAACAG
*
7682000 ATCAATA--C--AGTAGCA-
1 ATCAATATGCTTA-TAACAG
*
7682015 ATTAATATGCTTATAACAG
1 ATCAATATGCTTATAACAG
7682034 ATCAATA
1 ATCAATA
7682041 CGGTAGTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 12
0.66 0.09 0.26
Matches are distributed among these distances:
15 7 0.23
16 4 0.13
17 2 0.06
18 4 0.13
19 14 0.45
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (19 bp):
ATCAATATGCTTATAACAG
Found at i:7682117 original size:34 final size:34
Alignment explanation
Indices: 7681919--7682109 Score: 256
Period size: 34 Copynumber: 5.6 Consensus size: 34
7681909 GCAATATGAC
* *
7681919 ATGCTTATAATAAATCAATACGGTAGCAATTAAT
1 ATGCTTATAACAGATCAATACGGTAGCAATTAAT
* * * *
7681953 ATGCGTGTAGCAGATCAATACGGTAGCAATCAAT
1 ATGCTTATAACAGATCAATACGGTAGCAATTAAT
*
7681987 ATGCTTATAACAGATCAATACAGTAGCAATTAAT
1 ATGCTTATAACAGATCAATACGGTAGCAATTAAT
* *
7682021 ATGCTTATAACAGATCAATACGGTAGTAATTTAT
1 ATGCTTATAACAGATCAATACGGTAGCAATTAAT
* * *
7682055 ATGCTTACAATAGATCAATATGGTAGCAATTAAT
1 ATGCTTATAACAGATCAATACGGTAGCAATTAAT
* *
7682089 ATGCTTCTAACAAATCAATAC
1 ATGCTTATAACAGATCAATAC
7682110 ATTAGCAAAA
Statistics
Matches: 133, Mismatches: 24, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 133 1.00
ACGTcount: A:0.41, C:0.15, G:0.14, T:0.30
Consensus pattern (34 bp):
ATGCTTATAACAGATCAATACGGTAGCAATTAAT
Found at i:7687540 original size:40 final size:40
Alignment explanation
Indices: 7687462--7687598 Score: 197
Period size: 40 Copynumber: 3.5 Consensus size: 40
7687452 CGTTTGGACA
*
7687462 AAAAACGCCGCTATAGATCAAGCATTAGCGGCA-C-TTTTG
1 AAAAACGCCGCTATAGATCGAGCATTAGCGG-AGCTTTTTG
*
7687501 AAAAACGCAGCTATAGATCGAGCATTAGCGGAGCTTTTTG
1 AAAAACGCCGCTATAGATCGAGCATTAGCGGAGCTTTTTG
* * *
7687541 AAAAACGCCGCCATCGATCGAGCATTAGCGGTGCTTTTTG
1 AAAAACGCCGCTATAGATCGAGCATTAGCGGAGCTTTTTG
*
7687581 AAAAATGCCGCTATAGAT
1 AAAAACGCCGCTATAGAT
7687599 AAAAAAGCGC
Statistics
Matches: 87, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
38 1 0.01
39 30 0.34
40 56 0.64
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.24
Consensus pattern (40 bp):
AAAAACGCCGCTATAGATCGAGCATTAGCGGAGCTTTTTG
Found at i:7687762 original size:40 final size:40
Alignment explanation
Indices: 7687651--7687799 Score: 156
Period size: 40 Copynumber: 3.8 Consensus size: 40
7687641 AGCTTTAGTG
* * * *
7687651 GCATTAGCGGCACTTTTTGAATAACGCCGCTACAGATCGA
1 GCATTAGCGGCACTTTTTGAAAAATGCCGCTATAGATCAA
* * * *
7687691 GCATTAGTGGCGCTTCTTGAAAAGTGCCGCTATAGATCAA
1 GCATTAGCGGCACTTTTTGAAAAATGCCGCTATAGATCAA
* ** * *
7687731 GCATTAGCGGCGCTTTTTGAAAAATTTCGCTATAGGTCTA
1 GCATTAGCGGCACTTTTTGAAAAATGCCGCTATAGATCAA
* *
7687771 CCATTAGCGGCACGTTTT-AAAAATGCCGC
1 GCATTAGCGGCACTTTTTGAAAAATGCCGC
7687800 AAAAAAATTA
Statistics
Matches: 89, Mismatches: 20, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
39 9 0.10
40 80 0.90
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (40 bp):
GCATTAGCGGCACTTTTTGAAAAATGCCGCTATAGATCAA
Found at i:7690555 original size:43 final size:43
Alignment explanation
Indices: 7690508--7690681 Score: 210
Period size: 43 Copynumber: 4.1 Consensus size: 43
7690498 ATTTGCTGCG
* * *
7690508 TTTGTGAAAAAAACACCACTAAAGGTCATGTTCTTTAGCGGTA
1 TTTGTGATAAAAGCACCGCTAAAGGTCATGTTCTTTAGCGGTA
** * * *
7690551 TTTGTGATAAAAGCGTCGCTAAAGATCATGTTCTTTAGCGATG
1 TTTGTGATAAAAGCACCGCTAAAGGTCATGTTCTTTAGCGGTA
7690594 TTTGTGATAAAAGCACCGCTAAAGGTCATGTTCTTTAGCAGCG-A
1 TTTGTGATAAAAGCACCGCTAAAGGTCATGTTCTTTAGC-G-GTA
** *
7690638 -TTGTGATAAAAGTGCCGCTAAAGGTCATGTTC-TTAGCGGAA
1 TTTGTGATAAAAGCACCGCTAAAGGTCATGTTCTTTAGCGGTA
7690679 TTT
1 TTT
7690682 ATATGAAAAA
Statistics
Matches: 112, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
40 1 0.01
41 2 0.02
42 7 0.06
43 101 0.90
44 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (43 bp):
TTTGTGATAAAAGCACCGCTAAAGGTCATGTTCTTTAGCGGTA
Found at i:7690628 original size:86 final size:85
Alignment explanation
Indices: 7690507--7690675 Score: 243
Period size: 86 Copynumber: 2.0 Consensus size: 85
7690497 TATTTGCTGC
*
7690507 GTTTGTGAAAAAAACACCACTAAAGGTCATGTTCTTTAGC-G-GTATTTGTGATAAAAGCGTCGC
1 GTTTGTGAAAAAAACACCACTAAAGGTCATGTTCTTTAGCAGCG-A-TTGTGATAAAAGCGCCGC
7690570 TAAAGATCATGTTCTTTAGCGAT
64 TAAAGATCATGTTC-TTAGCGAT
* * * *
7690593 GTTTGTGATAAAAGCACCGCTAAAGGTCATGTTCTTTAGCAGCGATTGTGATAAAAGTGCCGCTA
1 GTTTGTGAAAAAAACACCACTAAAGGTCATGTTCTTTAGCAGCGATTGTGATAAAAGCGCCGCTA
*
7690658 AAGGTCATGTTCTTAGCG
66 AAGATCATGTTCTTAGCG
7690676 GAATTTATAT
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
85 6 0.08
86 66 0.88
87 2 0.03
88 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (85 bp):
GTTTGTGAAAAAAACACCACTAAAGGTCATGTTCTTTAGCAGCGATTGTGATAAAAGCGCCGCTA
AAGATCATGTTCTTAGCGAT
Found at i:7698461 original size:180 final size:180
Alignment explanation
Indices: 7698159--7698500 Score: 517
Period size: 180 Copynumber: 1.9 Consensus size: 180
7698149 CCTTATGTCA
* * * *
7698159 TTCAACAAATGCTCAAGGCATCTCTCAAGTATTCATATCTTTTAGCACCCTCAACCTTTTTTGGT
1 TTCAACAAATGCTAAAGGCACCTCTCAAGTATTCATATCTTTTAACACCCTCAACCTCTTTTGGT
* * *
7698224 TCAATAGTAGATTTGTAGCAAAAATAATATTTCTAAGAGGATGACTCTTTTGAATCCTCAATGAA
66 TCAATAGTAGACTTGTAGCAAAAATAACATTACTAAGAGGATGACTCTTTTGAATCCTCAATGAA
7698289 GG-TCTCATGGTAATCGATACATCT-TCAATCTAAGAGGATGGTAAAAGGTC
131 GGTTC-CATGGTAATCGATACATCTGT-AATCTAAGAGGATGGTAAAAGGTC
* * * * *
7698339 TTCAACAAATGTTAAAGGCACCTCTCAGGTATTCATATCTTTTAACATCCTTAACCTCTTTTGTT
1 TTCAACAAATGCTAAAGGCACCTCTCAAGTATTCATATCTTTTAACACCCTCAACCTCTTTTGGT
*
7698404 TCAATAGTAGACTTGTAGCACAAATAACATTACTAAGAGGATGACTCTTTTGAATCCTCAATGAA
66 TCAATAGTAGACTTGTAGCAAAAATAACATTACTAAGAGGATGACTCTTTTGAATCCTCAATGAA
* *
7698469 GGTTCCATGGTAGTTGATACATCTGTAATCTA
131 GGTTCCATGGTAATCGATACATCTGTAATCTA
7698501 GTGTTCAAGT
Statistics
Matches: 145, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
180 142 0.98
181 3 0.02
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (180 bp):
TTCAACAAATGCTAAAGGCACCTCTCAAGTATTCATATCTTTTAACACCCTCAACCTCTTTTGGT
TCAATAGTAGACTTGTAGCAAAAATAACATTACTAAGAGGATGACTCTTTTGAATCCTCAATGAA
GGTTCCATGGTAATCGATACATCTGTAATCTAAGAGGATGGTAAAAGGTC
Found at i:7703282 original size:5 final size:5
Alignment explanation
Indices: 7703272--7703301 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
7703262 TGAAATTGTA
7703272 TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT
1 TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT
7703302 CTCACTTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TAAAT
Found at i:7707710 original size:31 final size:31
Alignment explanation
Indices: 7707675--7707737 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
7707665 AAACCTGATT
7707675 GTAGTTAATTGGTTGACGAGAACCCAAGATG
1 GTAGTTAATTGGTTGACGAGAACCCAAGATG
7707706 GTAGTTAATTGGTTGACGAGAACCCAAGATG
1 GTAGTTAATTGGTTGACGAGAACCCAAGATG
7707737 G
1 G
7707738 ACACTATTTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (31 bp):
GTAGTTAATTGGTTGACGAGAACCCAAGATG
Found at i:7711294 original size:39 final size:40
Alignment explanation
Indices: 7711240--7711322 Score: 116
Period size: 40 Copynumber: 2.1 Consensus size: 40
7711230 GAAGCAGTAG
* *
7711240 TAGGAGTTGTAACACCC-TAACTC-GTCTCTGTCGCCAGAT
1 TAGGAGTTGTAACACCCATAAC-CAGTCTCCGCCGCCAGAT
*
7711279 TAGGAGTTGTAACACCCATAACCAGTCTCCGCCGTCAGAT
1 TAGGAGTTGTAACACCCATAACCAGTCTCCGCCGCCAGAT
7711319 TAGG
1 TAGG
7711323 GTTATAGAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
39 18 0.46
40 21 0.54
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TAGGAGTTGTAACACCCATAACCAGTCTCCGCCGCCAGAT
Found at i:7712323 original size:25 final size:25
Alignment explanation
Indices: 7712289--7712340 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
7712279 TTCGAAAGTA
7712289 ATCCAAACGACAGCTCAAATCCGAC
1 ATCCAAACGACAGCTCAAATCCGAC
*
7712314 ATCCAAACGACAGCTCAAATCTGAC
1 ATCCAAACGACAGCTCAAATCCGAC
7712339 AT
1 AT
7712341 TCTACAAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.40, C:0.33, G:0.12, T:0.15
Consensus pattern (25 bp):
ATCCAAACGACAGCTCAAATCCGAC
Found at i:7712986 original size:45 final size:45
Alignment explanation
Indices: 7712937--7713139 Score: 248
Period size: 45 Copynumber: 4.5 Consensus size: 45
7712927 GAAGTGATGC
* * * *
7712937 CATAGTATCTTTCAACTATGGTCTTATTCATATCGATTTTAATGT
1 CATAGTATCTTTCAACTATGGTCTTATTCATTTCCAGTATAATGT
* *
7712982 CATAGCATCTTTCAACTATGGTCTTATACATTTCCAGTATAATGT
1 CATAGTATCTTTCAACTATGGTCTTATTCATTTCCAGTATAATGT
* * **
7713027 CATAGTATCTTTCAACTATGGTTTTATTCA-TTCCAGTTTAATAC
1 CATAGTATCTTTCAACTATGGTCTTATTCATTTCCAGTATAATGT
** *
7713071 CATAGTATCTTTCAACTATGGTCTT-TCTCATTTCGGGTATACTGT
1 CATAGTATCTTTCAACTATGGTCTTAT-TCATTTCCAGTATAATGT
* *
7713116 CATGGTATCTTTCAACCATGGTCT
1 CATAGTATCTTTCAACTATGGTCT
7713140 ATCTTGTTTC
Statistics
Matches: 135, Mismatches: 21, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
43 1 0.01
44 38 0.28
45 96 0.71
ACGTcount: A:0.25, C:0.19, G:0.12, T:0.43
Consensus pattern (45 bp):
CATAGTATCTTTCAACTATGGTCTTATTCATTTCCAGTATAATGT
Found at i:7713111 original size:89 final size:90
Alignment explanation
Indices: 7712937--7713139 Score: 275
Period size: 89 Copynumber: 2.3 Consensus size: 90
7712927 GAAGTGATGC
* * **
7712937 CATAGTATCTTTCAACTATGGTCTTATTCATATCGATTTTAATGTCATAGCATCTTTCAACTATG
1 CATAGTATCTTTCAACTATGGTCTTATTCATATCCAGTTTAATACCATAGCATCTTTCAACTATG
7713002 GTCTTATACATTTCCAGTATAATGT
66 GTCTTATACATTTCCAGTATAATGT
* *
7713027 CATAGTATCTTTCAACTATGGTTTTATTCAT-TCCAGTTTAATACCATAGTATCTTTCAACTATG
1 CATAGTATCTTTCAACTATGGTCTTATTCATATCCAGTTTAATACCATAGCATCTTTCAACTATG
* ** *
7713091 GTCTT-TCTCATTTCGGGTATACTGT
66 GTCTTAT-ACATTTCCAGTATAATGT
* *
7713116 CATGGTATCTTTCAACCATGGTCT
1 CATAGTATCTTTCAACTATGGTCT
7713140 ATCTTGTTTC
Statistics
Matches: 99, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
88 1 0.01
89 68 0.69
90 30 0.30
ACGTcount: A:0.25, C:0.19, G:0.12, T:0.43
Consensus pattern (90 bp):
CATAGTATCTTTCAACTATGGTCTTATTCATATCCAGTTTAATACCATAGCATCTTTCAACTATG
GTCTTATACATTTCCAGTATAATGT
Found at i:7713937 original size:5 final size:5
Alignment explanation
Indices: 7713929--7713955 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
7713919 TTATTTTATT
7713929 TTAAC TTAAC TTAAC TTAAC TTAAC TT
1 TTAAC TTAAC TTAAC TTAAC TTAAC TT
7713956 TTATTTTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.37, C:0.19, G:0.00, T:0.44
Consensus pattern (5 bp):
TTAAC
Found at i:7716899 original size:47 final size:47
Alignment explanation
Indices: 7716830--7716921 Score: 184
Period size: 47 Copynumber: 2.0 Consensus size: 47
7716820 TCAATGTTAA
7716830 GTTAAATGTTAGTAGGCTATAAATATAACTTTATAAGCCTTTCATAG
1 GTTAAATGTTAGTAGGCTATAAATATAACTTTATAAGCCTTTCATAG
7716877 GTTAAATGTTAGTAGGCTATAAATATAACTTTATAAGCCTTTCAT
1 GTTAAATGTTAGTAGGCTATAAATATAACTTTATAAGCCTTTCAT
7716922 TTCAGATTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.39
Consensus pattern (47 bp):
GTTAAATGTTAGTAGGCTATAAATATAACTTTATAAGCCTTTCATAG
Found at i:7723161 original size:2 final size:2
Alignment explanation
Indices: 7723154--7723185 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7723144 TCATCTTACC
7723154 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
7723186 TTTGTCTTTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:7731870 original size:15 final size:16
Alignment explanation
Indices: 7731847--7731895 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 16
7731837 TAGTGTATTT
7731847 AATATATTATATTTTAA
1 AATA-ATTATATTTTAA
**
7731864 AA-AATTATATAATAA
1 AATAATTATATTTTAA
7731879 AATAATT-T-TTTTAA
1 AATAATTATATTTTAA
7731893 AAT
1 AAT
7731896 TAATACGGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
14 7 0.26
15 13 0.48
16 5 0.19
17 2 0.07
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
AATAATTATATTTTAA
Found at i:7733960 original size:18 final size:18
Alignment explanation
Indices: 7733934--7733969 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
7733924 AAGACATAAC
7733934 CAATCCATTTCCAACTCA
1 CAATCCATTTCCAACTCA
*
7733952 CAATTCATTTCCAACTCA
1 CAATCCATTTCCAACTCA
7733970 TACCTAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.33, C:0.36, G:0.00, T:0.31
Consensus pattern (18 bp):
CAATCCATTTCCAACTCA
Found at i:7734488 original size:15 final size:15
Alignment explanation
Indices: 7734468--7734498 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
7734458 AACATAGTTT
7734468 GTACCAAAATGACTC
1 GTACCAAAATGACTC
7734483 GTACCAAAATGACTC
1 GTACCAAAATGACTC
7734498 G
1 G
7734499 ACCTAGATAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.26, G:0.16, T:0.19
Consensus pattern (15 bp):
GTACCAAAATGACTC
Found at i:7737745 original size:21 final size:21
Alignment explanation
Indices: 7737715--7737790 Score: 86
Period size: 21 Copynumber: 3.8 Consensus size: 21
7737705 AAACTTGGCC
7737715 TTTTG-GTTTAAGGTTTAGGA
1 TTTTGAGTTTAAGGTTTAGGA
**
7737735 TTTTGAGTTTAAGGTTTAATA
1 TTTTGAGTTTAAGGTTTAGGA
* *
7737756 TTTTGAGTTTAGGGTTCAGG-
1 TTTTGAGTTTAAGGTTTAGGA
*
7737776 -TTTGGGTTTAAGGTT
1 TTTTGAGTTTAAGGTT
7737791 CAAGGTTCAA
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
19 13 0.28
20 5 0.11
21 29 0.62
ACGTcount: A:0.20, C:0.01, G:0.29, T:0.50
Consensus pattern (21 bp):
TTTTGAGTTTAAGGTTTAGGA
Found at i:7737784 original size:19 final size:20
Alignment explanation
Indices: 7737736--7737797 Score: 63
Period size: 19 Copynumber: 3.1 Consensus size: 20
7737726 GGTTTAGGAT
* **
7737736 TTTGAGTTTAAGGTTTAATAT
1 TTTGAGTTTAAGGTTCAA-GG
*
7737757 TTTGAGTTTAGGGTTC-AGG
1 TTTGAGTTTAAGGTTCAAGG
*
7737776 TTTGGGTTTAAGGTTCAAGG
1 TTTGAGTTTAAGGTTCAAGG
7737796 TT
1 TT
7737798 CAAGATTTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
19 14 0.41
20 6 0.18
21 14 0.41
ACGTcount: A:0.21, C:0.03, G:0.29, T:0.47
Consensus pattern (20 bp):
TTTGAGTTTAAGGTTCAAGG
Found at i:7738270 original size:20 final size:20
Alignment explanation
Indices: 7738237--7738287 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
7738227 TTTAGATTTA
** *
7738237 GGGTTCAAGTTTCAATGTTC
1 GGGTTCAAAATTCAAAGTTC
7738257 GGGTTCAAAATTCAAAGTTC
1 GGGTTCAAAATTCAAAGTTC
* *
7738277 GAGTTAAAAAT
1 GGGTTCAAAAT
7738288 ATTGTTAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (20 bp):
GGGTTCAAAATTCAAAGTTC
Found at i:7740486 original size:49 final size:49
Alignment explanation
Indices: 7740409--7740522 Score: 165
Period size: 49 Copynumber: 2.3 Consensus size: 49
7740399 AACTTGAACA
* * * * *
7740409 CGTGACCACATAACCACTGTCAACTGGGCTCTTGAGTTATACTCTAACC
1 CGTGACCGCATAACCACTGCCAAATGGGCACTCGAGTTATACTCTAACC
* *
7740458 CGTGACTGCATAACCACTGCCAAATGGGCACTCGAGTTATACTCTAATC
1 CGTGACCGCATAACCACTGCCAAATGGGCACTCGAGTTATACTCTAACC
7740507 CGTGACCGCATAACCA
1 CGTGACCGCATAACCA
7740523 TCGTCAACTA
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 57 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.24
Consensus pattern (49 bp):
CGTGACCGCATAACCACTGCCAAATGGGCACTCGAGTTATACTCTAACC
Found at i:7754044 original size:56 final size:59
Alignment explanation
Indices: 7753982--7754096 Score: 157
Period size: 60 Copynumber: 2.0 Consensus size: 59
7753972 TACACTAGTA
7753982 GTCACTCAACTATTAGT-A-TT-TTTTTT-GTCACCCAACTATAAAAAAGTTACAAAATG
1 GTCACTCAACTATTAGTAATTTCTTTTTTGGTCACCCAACTAT-AAAAAGTTACAAAATG
* * *
7754038 GTCACTCAACTATTAGTAAATTTCTTTTTTGGTCACCCAAGTATGAAAAGTTATAAAAT
1 GTCACTCAACTATTAGT-AATTTCTTTTTTGGTCACCCAACTATAAAAAGTTACAAAAT
7754097 AATCAGCCAA
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
56 17 0.33
58 1 0.02
59 2 0.04
60 19 0.37
61 12 0.24
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.37
Consensus pattern (59 bp):
GTCACTCAACTATTAGTAATTTCTTTTTTGGTCACCCAACTATAAAAAGTTACAAAATG
Found at i:7754556 original size:14 final size:14
Alignment explanation
Indices: 7754537--7754576 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
7754527 TTGATTGCCA
7754537 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
7754551 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
7754565 GGAAAATGTTTT
1 GTAAAATGTTTT
7754577 ACTTTTCTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:7760073 original size:7 final size:7
Alignment explanation
Indices: 7760031--7760102 Score: 58
Period size: 7 Copynumber: 10.4 Consensus size: 7
7760021 CTTAAACTCG
7760031 AACCTTA
1 AACCTTA
** *
7760038 AAAGTTG
1 AACCTTA
7760045 AACCTTA
1 AACCTTA
*
7760052 AACC-CA
1 AACCTTA
*
7760058 AACCCTA
1 AACCTTA
*
7760065 AATCTTA
1 AACCTTA
*
7760072 AA-CTCAA
1 AACCT-TA
7760079 AACCTTA
1 AACCTTA
7760086 AACCTTA
1 AACCTTA
7760093 AACCTTA
1 AACCTTA
7760100 AAC
1 AAC
7760103 TTGAACCCAA
Statistics
Matches: 50, Mismatches: 12, Indels: 6
0.74 0.18 0.09
Matches are distributed among these distances:
6 7 0.14
7 41 0.82
8 2 0.04
ACGTcount: A:0.46, C:0.28, G:0.03, T:0.24
Consensus pattern (7 bp):
AACCTTA
Found at i:7760087 original size:21 final size:20
Alignment explanation
Indices: 7760045--7760096 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
7760035 TTAAAAGTTG
*
7760045 AACCTTAAACCCAAACCCTA
1 AACCTTAAACCAAAACCCTA
* *
7760065 AATCTTAAACTCAAAACCTTA
1 AACCTTAAAC-CAAAACCCTA
7760086 AACCTTAAACC
1 AACCTTAAACC
7760097 TTAAACTTGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 10 0.37
21 17 0.63
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.21
Consensus pattern (20 bp):
AACCTTAAACCAAAACCCTA
Found at i:7760141 original size:14 final size:14
Alignment explanation
Indices: 7760079--7760141 Score: 58
Period size: 14 Copynumber: 4.6 Consensus size: 14
7760069 TTAAACTCAA
*
7760079 AACCTTAAACCTTA
1 AACCTTAAACCTTG
7760093 AACCTTAAA-CTTG
1 AACCTTAAACCTTG
* *
7760106 AACC-CAAACCCTG
1 AACCTTAAACCTTG
**
7760119 ATTCTTAAACCTTG
1 AACCTTAAACCTTG
*
7760133 AACCCTAAA
1 AACCTTAAA
7760142 TCAAAAGGCC
Statistics
Matches: 37, Mismatches: 10, Indels: 4
0.73 0.20 0.08
Matches are distributed among these distances:
12 3 0.08
13 12 0.32
14 22 0.59
ACGTcount: A:0.40, C:0.30, G:0.05, T:0.25
Consensus pattern (14 bp):
AACCTTAAACCTTG
Found at i:7760506 original size:13 final size:13
Alignment explanation
Indices: 7760490--7760528 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
7760480 GAACCTTAAA
7760490 CCCAAACTCGAAC
1 CCCAAACTCGAAC
*
7760503 CCCAAACCTTGAAC
1 CCCAAA-CTCGAAC
*
7760517 CCTAAACTCGAA
1 CCCAAACTCGAA
7760529 ACGTTAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.38, C:0.41, G:0.08, T:0.13
Consensus pattern (13 bp):
CCCAAACTCGAAC
Found at i:7760509 original size:19 final size:20
Alignment explanation
Indices: 7760468--7760510 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
7760458 GTAATTTTTT
* **
7760468 AACCCAAAACTTGAACCTTA
1 AACCCAAAACTCGAACCCCA
7760488 AACCC-AAACTCGAACCCCA
1 AACCCAAAACTCGAACCCCA
7760507 AACC
1 AACC
7760511 TTGAACCCTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.44, C:0.40, G:0.05, T:0.12
Consensus pattern (20 bp):
AACCCAAAACTCGAACCCCA
Found at i:7760678 original size:47 final size:50
Alignment explanation
Indices: 7760584--7760678 Score: 110
Period size: 47 Copynumber: 2.0 Consensus size: 50
7760574 AAAATGCCAA
* * *
7760584 GTTTAGGGTTTTGAGTTTGGGTTGTAGGGGTTTAAGGTTTATGATTCATG
1 GTTTAGGGTTTTGAGTTTGGGTTGCAGGGGTTCAAGGTTTACGATTCATG
7760634 GTTT-GGG-TTTGAGTTTGGGGTT-CA-GGGTTCAAGGTTT-CGAATTCA
1 GTTTAGGGTTTTGAGTTT-GGGTTGCAGGGGTTCAAGGTTTACG-ATTCA
7760679 GATTAAAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
46 1 0.03
47 17 0.43
48 10 0.25
49 8 0.20
50 4 0.10
ACGTcount: A:0.16, C:0.05, G:0.36, T:0.43
Consensus pattern (50 bp):
GTTTAGGGTTTTGAGTTTGGGTTGCAGGGGTTCAAGGTTTACGATTCATG
Found at i:7761115 original size:141 final size:142
Alignment explanation
Indices: 7760854--7761134 Score: 440
Period size: 141 Copynumber: 2.0 Consensus size: 142
7760844 CCCTTTTTCC
* * * **
7760854 AATAGTTTAATGCCATATCAACATTTTCGTCCTGAATTTCAGGATTTTCGTCCTGAATAAAATTA
1 AATAGTTTAATGCCATATCAACATTTTCATCCTAAATTTCAGGATTTTCGTCCTGAAAAAAAGCA
* ** *
7760919 AATCTAAATAAAAATCTTGAAATTTAGGATGAAATTGTTGAGGTGGCATTAAACTATTGGAAAGG
66 AATCTAAATAAAAATCCTGAAATTTAGGATGAAATTACTGAGGTGGCATTAAACTATTGGAAAGA
7760984 GATAATATCCAT
131 GATAATATCCAT
*
7760996 AATAGTTTAATGCCATATCAACATTTTCATCCTAAATTTCAGGATTTTTGTCCT-AAAAAAAGCA
1 AATAGTTTAATGCCATATCAACATTTTCATCCTAAATTTCAGGATTTTCGTCCTGAAAAAAAGCA
*
7761060 AATCTAAATAAAACTCCTGAAATTTAGGATGAAATTACTG-GTGTGGCATTAAACTATTGGAAAG
66 AATCTAAATAAAAATCCTGAAATTTAGGATGAAATTACTGAG-GTGGCATTAAACTATTGGAAAG
7761124 AGATAATATCC
130 AGATAATATCC
7761135 CTATTTCATA
Statistics
Matches: 127, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
140 1 0.01
141 75 0.59
142 51 0.40
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.33
Consensus pattern (142 bp):
AATAGTTTAATGCCATATCAACATTTTCATCCTAAATTTCAGGATTTTCGTCCTGAAAAAAAGCA
AATCTAAATAAAAATCCTGAAATTTAGGATGAAATTACTGAGGTGGCATTAAACTATTGGAAAGA
GATAATATCCAT
Found at i:7766404 original size:41 final size:42
Alignment explanation
Indices: 7766359--7766474 Score: 139
Period size: 41 Copynumber: 2.8 Consensus size: 42
7766349 ATCTGAGATT
* *
7766359 TTCAGGCCTAATGCCTAGCAGGCTTGATGCCGGTG-AAT-TAA
1 TTCAGGCTTAATGCCTAGCAGGCTTTATGCCGGTGAAATGT-A
* * *
7766400 TTCAGACTTGATGTCTAGCAGGCTTTATGCCGGTGAAATGTA
1 TTCAGGCTTAATGCCTAGCAGGCTTTATGCCGGTGAAATGTA
**
7766442 -TCAGGCTTTGTGCCTAGCAGGCTTTATGCCGGT
1 TTCAGGCTTAATGCCTAGCAGGCTTTATGCCGGT
7766475 ATTTTATGCA
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
41 59 0.92
42 4 0.06
43 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.31
Consensus pattern (42 bp):
TTCAGGCTTAATGCCTAGCAGGCTTTATGCCGGTGAAATGTA
Found at i:7770660 original size:9 final size:9
Alignment explanation
Indices: 7770646--7770676 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
7770636 GTTAAAGGAA
7770646 TCGAGTTAT
1 TCGAGTTAT
*
7770655 TCGAGTTAA
1 TCGAGTTAT
7770664 TCGAGTTAT
1 TCGAGTTAT
7770673 TCGA
1 TCGA
7770677 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:7770746 original size:9 final size:9
Alignment explanation
Indices: 7770732--7770774 Score: 68
Period size: 9 Copynumber: 4.8 Consensus size: 9
7770722 GTTTTCGAAT
7770732 TCGAATAAC
1 TCGAATAAC
7770741 TCGAATAAC
1 TCGAATAAC
*
7770750 TCGAATAAT
1 TCGAATAAC
*
7770759 TCGAATAAT
1 TCGAATAAC
7770768 TCGAATA
1 TCGAATA
7770775 TCAAACTATA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (9 bp):
TCGAATAAC
Found at i:7771019 original size:30 final size:31
Alignment explanation
Indices: 7770985--7771044 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
7770975 AAACCTTTTA
*
7770985 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
** *
7771015 TTTTCCCTTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
7771045 TCACACCTCC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.20, C:0.38, G:0.00, T:0.42
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:7774788 original size:40 final size:40
Alignment explanation
Indices: 7774733--7774948 Score: 227
Period size: 40 Copynumber: 5.3 Consensus size: 40
7774723 GTTGGATCGA
* *
7774733 AAACGCCGCAAAAGGTAAAACATTAGCAGCGTTTTTGCAT
1 AAACGCCGCAAAAGGTAAAACAATAGCAGCGTTTTTTCAT
* *
7774773 AAACGCCGCAAAAGGTATAACAATAGTAGCGTTTTTCTCAT
1 AAACGCCGCAAAAGGTAAAACAATAGCAGCGTTTTT-TCAT
* * * *
7774814 AAACACAGCAAAAGATAAAAGAAATAGCAGCGTTTTTCTCAT
1 AAACGCCGCAAAAGGTAAAA-CAATAGCAGCGTTTTT-TCAT
* *
7774856 AAACGCCGCAAAAGGT-AAACTAATAACGGCGTTTTTTCAT
1 AAACGCCGCAAAAGGTAAAAC-AATAGCAGCGTTTTTTCAT
* * * * * *
7774896 AAACACCACTAAATGTAAAGCAATAGCAGTGTTTTTTCCAT
1 AAACGCCGCAAAAGGTAAAACAATAGCAGCGTTTTTT-CAT
*
7774937 AAATGCCGCAAA
1 AAACGCCGCAAA
7774949 TATTTTTTTG
Statistics
Matches: 143, Mismatches: 28, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
40 62 0.43
41 49 0.34
42 32 0.22
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.24
Consensus pattern (40 bp):
AAACGCCGCAAAAGGTAAAACAATAGCAGCGTTTTTTCAT
Found at i:7775943 original size:127 final size:127
Alignment explanation
Indices: 7775717--7775976 Score: 484
Period size: 127 Copynumber: 2.0 Consensus size: 127
7775707 CAAAGAATAA
7775717 TTTATTCTCTTGAGAAATTTATAAGTTTTTACAGTTTTATCACTTTTAAGTGTATTTTTAAGAAT
1 TTTATTCTCTTGAGAAATTTATAAGTTTTTACAGTTTTATCACTTTTAAGTGTATTTTTAAGAAT
* *
7775782 CTGAACTACAATATTAAAGATTGTTTTTGGTAAAACGGATCCGTTTTACTTCTAATTTGTGG
66 CCGAACTACAATATTAAAGATTGTATTTGGTAAAACGGATCCGTTTTACTTCTAATTTGTGG
7775844 TTTATTCTCTTGAGAAATTTATAAGTTTTTACAGTTTTATCACTTTTAAGTGTATTTTTAAGAAT
1 TTTATTCTCTTGAGAAATTTATAAGTTTTTACAGTTTTATCACTTTTAAGTGTATTTTTAAGAAT
* *
7775909 CCGAACTACAATCTTAAAGATTGTATTTGGTAAAACGGGTCCGTTTTACTTCTAATTTGTGG
66 CCGAACTACAATATTAAAGATTGTATTTGGTAAAACGGATCCGTTTTACTTCTAATTTGTGG
7775971 TTTATT
1 TTTATT
7775977 GTTAATCCTA
Statistics
Matches: 129, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
127 129 1.00
ACGTcount: A:0.28, C:0.11, G:0.14, T:0.47
Consensus pattern (127 bp):
TTTATTCTCTTGAGAAATTTATAAGTTTTTACAGTTTTATCACTTTTAAGTGTATTTTTAAGAAT
CCGAACTACAATATTAAAGATTGTATTTGGTAAAACGGATCCGTTTTACTTCTAATTTGTGG
Found at i:7776024 original size:40 final size:40
Alignment explanation
Indices: 7775964--7776041 Score: 138
Period size: 40 Copynumber: 1.9 Consensus size: 40
7775954 TTACTTCTAA
* *
7775964 TTTGTGGTTTATTGTTAATCCTATTTTGTGGTAGTCCTAT
1 TTTGTGGTTTATTCTCAATCCTATTTTGTGGTAGTCCTAT
7776004 TTTGTGGTTTATTCTCAATCCTATTTTGTGGTAGTCCT
1 TTTGTGGTTTATTCTCAATCCTATTTTGTGGTAGTCCT
7776042 GTTATTCATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.14, C:0.13, G:0.19, T:0.54
Consensus pattern (40 bp):
TTTGTGGTTTATTCTCAATCCTATTTTGTGGTAGTCCTAT
Found at i:7779397 original size:28 final size:28
Alignment explanation
Indices: 7779366--7779424 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
7779356 CACTGGAACT
7779366 ACAAATTATGAGGAACATCAAATGTGAA
1 ACAAATTATGAGGAACATCAAATGTGAA
7779394 ACAAATTATGAGGAACATCAAATGTGAA
1 ACAAATTATGAGGAACATCAAATGTGAA
7779422 ACA
1 ACA
7779425 TGAAAGAACG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.51, C:0.12, G:0.17, T:0.20
Consensus pattern (28 bp):
ACAAATTATGAGGAACATCAAATGTGAA
Found at i:7779586 original size:44 final size:45
Alignment explanation
Indices: 7779521--7779606 Score: 140
Period size: 44 Copynumber: 1.9 Consensus size: 45
7779511 TGAACATGTT
*
7779521 TAGCGGTGTTTGTGGAGAAAGCGCCGCTAAAGGT-ATGTTCTTAG
1 TAGCGGCGTTTGTGGAGAAAGCGCCGCTAAAGGTCATGTTCTTAG
7779565 TAGCGGCGTTTGTAGGA-AAAGCGCCGCTAAAGGTCATGTTCT
1 TAGCGGCGTTTGT-GGAGAAAGCGCCGCTAAAGGTCATGTTCT
7779607 ATAACGATAT
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
44 29 0.74
45 10 0.26
ACGTcount: A:0.23, C:0.16, G:0.33, T:0.28
Consensus pattern (45 bp):
TAGCGGCGTTTGTGGAGAAAGCGCCGCTAAAGGTCATGTTCTTAG
Found at i:7783210 original size:28 final size:29
Alignment explanation
Indices: 7783146--7783221 Score: 93
Period size: 28 Copynumber: 2.7 Consensus size: 29
7783136 AGACTGTCTC
* *
7783146 CCACTTTGGCTTGCACTTTGTACTATCCG
1 CCACTTTAGCTTGCACTTTGAACTATCCG
* *
7783175 CCACTTTAGCTTGCAC-TTGAATTGTCCG
1 CCACTTTAGCTTGCACTTTGAACTATCCG
7783203 CCACTTTAGCTCT-CACTTT
1 CCACTTTAGCT-TGCACTTT
7783222 TGGCTTGTCT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
28 23 0.56
29 18 0.44
ACGTcount: A:0.16, C:0.32, G:0.14, T:0.38
Consensus pattern (29 bp):
CCACTTTAGCTTGCACTTTGAACTATCCG
Found at i:7794784 original size:33 final size:34
Alignment explanation
Indices: 7794739--7794802 Score: 96
Period size: 33 Copynumber: 1.9 Consensus size: 34
7794729 TTCAGTCAAA
7794739 ATTTTATAATATTATAAATAA-TATACATTTTATT
1 ATTTTATAATATTATAAATAATTATA-ATTTTATT
*
7794773 ATTTTA-AATATTTTAAATAATTATAATTTT
1 ATTTTATAATATTATAAATAATTATAATTTT
7794803 TTACACGAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 18 0.64
34 10 0.36
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.55
Consensus pattern (34 bp):
ATTTTATAATATTATAAATAATTATAATTTTATT
Found at i:7798279 original size:17 final size:18
Alignment explanation
Indices: 7798240--7798281 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
7798230 ATAAAAATGA
7798240 TAAAAAAATCATAAAAGT
1 TAAAAAAATCATAAAAGT
*
7798258 CAAAAAAAT-ATAAATA-T
1 TAAAAAAATCATAAA-AGT
7798275 TAAAAAA
1 TAAAAAA
7798282 TATTAAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.21
Consensus pattern (18 bp):
TAAAAAAATCATAAAAGT
Found at i:7798386 original size:30 final size:31
Alignment explanation
Indices: 7798311--7798386 Score: 72
Period size: 30 Copynumber: 2.5 Consensus size: 31
7798301 TTATTAGAAT
7798311 TATAAAAAAT-ATAAAGACTTATAAATAAATA
1 TATAAAAAATCAT-AAGACTTATAAATAAATA
*
7798342 T-T-AAAATTGACATAAG-CTTATAAA-AAATTA
1 TATAAAAAAT--CATAAGACTTATAAATAAA-TA
7798372 TATAAAAAATCATAA
1 TATAAAAAATCATAA
7798387 AAACTTGAAC
Statistics
Matches: 37, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
29 8 0.22
30 17 0.46
31 5 0.14
32 7 0.19
ACGTcount: A:0.61, C:0.05, G:0.04, T:0.30
Consensus pattern (31 bp):
TATAAAAAATCATAAGACTTATAAATAAATA
Found at i:7800637 original size:52 final size:52
Alignment explanation
Indices: 7800459--7800639 Score: 285
Period size: 52 Copynumber: 3.5 Consensus size: 52
7800449 CGGATACCTG
* * *
7800459 GTGGCCTACACATAGTACCACTCTTGT-AGCCAAAGCTA-CCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGA-CCAAAGCTATCTTTCTTCACAAA
* *
7800510 GTGGCCTTCACATAGTACCACATTTGTGACCAAAGCTATCTTTTTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAA
7800562 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAA
*
7800614 GTGGCCTTCACATAGTACTACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
7800640 AGTCACTAGT
Statistics
Matches: 120, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
51 33 0.28
52 87 0.73
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.29
Consensus pattern (52 bp):
GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAA
Found at i:7802573 original size:23 final size:23
Alignment explanation
Indices: 7802543--7802590 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
7802533 CAATTAAGGT
7802543 AAGTATATAAAGCATACTCAAGC
1 AAGTATATAAAGCATACTCAAGC
7802566 AAGTATATAAAGCATACTCAAGC
1 AAGTATATAAAGCATACTCAAGC
7802589 AA
1 AA
7802591 ATGGCCAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.50, C:0.17, G:0.12, T:0.21
Consensus pattern (23 bp):
AAGTATATAAAGCATACTCAAGC
Found at i:7802930 original size:25 final size:25
Alignment explanation
Indices: 7802900--7803009 Score: 98
Period size: 25 Copynumber: 4.5 Consensus size: 25
7802890 GCCCTCTCTC
* *
7802900 GAGCCATATATCAGGAAGCTCATGT
1 GAGCCATATAACAGGAAGCTCATAT
* * **
7802925 GAGCCATATAACGGGAAGCTTATCC
1 GAGCCATATAACAGGAAGCTCATAT
* * * *
7802950 GGGCTATATAACGGGAAGCTCATAA
1 GAGCCATATAACAGGAAGCTCATAT
* *
7802975 GAGTCATAT-GCAGGAAGCTCATAT
1 GAGCCATATAACAGGAAGCTCATAT
7802999 GAGCCA-ATAAC
1 GAGCCATATAAC
7803010 GGGTAACTTC
Statistics
Matches: 66, Mismatches: 18, Indels: 3
0.76 0.21 0.03
Matches are distributed among these distances:
23 2 0.03
24 18 0.27
25 46 0.70
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.21
Consensus pattern (25 bp):
GAGCCATATAACAGGAAGCTCATAT
Found at i:7803640 original size:21 final size:22
Alignment explanation
Indices: 7803611--7803653 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
7803601 AAGAGTAAAT
*
7803611 TTAACTCAATTTAATACAATTC
1 TTAACTCAATTCAATACAATTC
*
7803633 TTAA-TCAATTCAATCCAATTC
1 TTAACTCAATTCAATACAATTC
7803654 ACATATTAGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.40, C:0.21, G:0.00, T:0.40
Consensus pattern (22 bp):
TTAACTCAATTCAATACAATTC
Found at i:7804574 original size:10 final size:9
Alignment explanation
Indices: 7804559--7804656 Score: 51
Period size: 9 Copynumber: 10.9 Consensus size: 9
7804549 CCAGTTCAAG
7804559 TTTTTATAA
1 TTTTTATAA
7804568 TTTTTTATAA
1 -TTTTTATAA
*
7804578 CTTTTATAA
1 TTTTTATAA
* *
7804587 -GTATATTAA
1 TTTTTA-TAA
* *
7804596 -TTTAATAC
1 TTTTTATAA
* *
7804604 TTTTAATAC
1 TTTTTATAA
7804613 TTTTTAT-A
1 TTTTTATAA
*
7804621 TTTTTAATCA
1 TTTTT-ATAA
*
7804631 -TTTTATTA
1 TTTTTATAA
7804639 TTTTTAATAA
1 TTTTT-ATAA
7804649 TTTTTATA
1 TTTTTATA
7804657 GAATTTTAAT
Statistics
Matches: 71, Mismatches: 11, Indels: 13
0.75 0.12 0.14
Matches are distributed among these distances:
8 13 0.18
9 40 0.56
10 18 0.25
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (9 bp):
TTTTTATAA
Found at i:7804610 original size:9 final size:9
Alignment explanation
Indices: 7804596--7804652 Score: 53
Period size: 9 Copynumber: 6.3 Consensus size: 9
7804586 AGTATATTAA
7804596 TTTAATACT
1 TTTAATACT
7804605 TTTAATACT
1 TTTAATACT
* *
7804614 TTTTATATT
1 TTTAATACT
7804623 TTTAAT-CAT
1 TTTAATAC-T
* *
7804632 TTTATTATT
1 TTTAATACT
*
7804641 TTTAATAAT
1 TTTAATACT
7804650 TTT
1 TTT
7804653 TATAGAATTT
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
9 38 1.00
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (9 bp):
TTTAATACT
Found at i:7804627 original size:18 final size:18
Alignment explanation
Indices: 7804604--7804656 Score: 72
Period size: 18 Copynumber: 2.9 Consensus size: 18
7804594 AATTTAATAC
7804604 TTTTAATACTTTTTATAT
1 TTTTAATACTTTTTATAT
*
7804622 TTTTAAT-CATTTTATTAT
1 TTTTAATACTTTTTA-TAT
*
7804640 TTTTAATAATTTTTATA
1 TTTTAATACTTTTTATA
7804657 GAATTTTAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 6 0.20
18 19 0.63
19 5 0.17
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTTAATACTTTTTATAT
Found at i:7819765 original size:6 final size:6
Alignment explanation
Indices: 7819756--7819782 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
7819746 AAGAATAAGA
7819756 ACAAGC ACAAGC ACAAGC ACAAGC ACA
1 ACAAGC ACAAGC ACAAGC ACAAGC ACA
7819783 TGTTTATGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.52, C:0.33, G:0.15, T:0.00
Consensus pattern (6 bp):
ACAAGC
Found at i:7822864 original size:44 final size:44
Alignment explanation
Indices: 7822816--7823135 Score: 155
Period size: 44 Copynumber: 7.3 Consensus size: 44
7822806 AATAGCAAAT
* * *
7822816 CTTGCCTTCCTGCACCGACAGCGAAGCAAATTGAAGACACCAGC
1 CTTGCCTCCCTGCACTGACAGCGAAGCAGATTGAAGACACCAGC
** * * * * *
7822860 CTTGCCTCCCTAG-GTTG-CAGCGGAGCAGGTTGAAGATAGCAGAT
1 CTTGCCTCCCT-GCACTGACAGCGAAGCAGATTGAAGACACCAG-C
* * *
7822904 CTTACCTTCCTGCACTGACAGCGAAGTAGATTGAAGACACCAGC
1 CTTGCCTCCCTGCACTGACAGCGAAGCAGATTGAAGACACCAGC
** * * * * * * *
7822948 CTTGCCTCCCTG-GGTTACAGCGGAGCAGGTTAAAGATAGCAGAT
1 CTTGCCTCCCTGCACTGACAGCGAAGCAGATTGAAGACACCAG-C
* * * * * *
7822992 CTTGCCTTCCTGTATTGACAGTGAAGTAGATTGAAGACACTAGC
1 CTTGCCTCCCTGCACTGACAGCGAAGCAGATTGAAGACACCAGC
* *** ** * * *** *
7823036 TTTGCCTCCCTGGGTTG-CAGCGGGGCAGGTTGAAGATAGTGGAT
1 CTTGCCTCCCTGCACTGACAGCGAAGCAGATTGAAGACACCAG-C
* ** * *
7823080 CTTGCCTTCCTGCA-TCGACAGCGAAGCAGATCAAAGGCACCAAC
1 CTTGCCTCCCTGCACT-GACAGCGAAGCAGATTGAAGACACCAGC
7823124 CTTGCCTCCCTG
1 CTTGCCTCCCTG
7823136 GGTTACAACG
Statistics
Matches: 192, Mismatches: 75, Indels: 18
0.67 0.26 0.06
Matches are distributed among these distances:
43 60 0.31
44 78 0.41
45 54 0.28
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.23
Consensus pattern (44 bp):
CTTGCCTCCCTGCACTGACAGCGAAGCAGATTGAAGACACCAGC
Found at i:7822914 original size:88 final size:88
Alignment explanation
Indices: 7822765--7823242 Score: 580
Period size: 88 Copynumber: 5.4 Consensus size: 88
7822755 TAAGTGTATT
* ** * * *
7822765 CACCATCCTTGCCTCACC-GGGTTGTAGCGGAGGAGGTTGAAAATAGCAAATCTTGCCTTCCTGC
1 CACCAGCCTTGCCTC-CCTGGGTTACAGCGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGC
** *
7822829 ACCGACAGCGAAGCAAATTGAAGA
65 ATTGACAGCGAAGCAGATTGAAGA
* * *
7822853 CACCAGCCTTGCCTCCCTAGGTTGCAGCGGAGCAGGTTGAAGATAGCAGATCTTACCTTCCTGCA
1 CACCAGCCTTGCCTCCCTGGGTTACAGCGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCA
* *
7822918 CTGACAGCGAAGTAGATTGAAGA
66 TTGACAGCGAAGCAGATTGAAGA
* *
7822941 CACCAGCCTTGCCTCCCTGGGTTACAGCGGAGCAGGTTAAAGATAGCAGATCTTGCCTTCCTGTA
1 CACCAGCCTTGCCTCCCTGGGTTACAGCGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCA
* *
7823006 TTGACAGTGAAGTAGATTGAAGA
66 TTGACAGCGAAGCAGATTGAAGA
* * * * **
7823029 CACTAGCTTTGCCTCCCTGGGTTGCAGCGGGGCAGGTTGAAGATAGTGGATCTTGCCTTCCTGCA
1 CACCAGCCTTGCCTCCCTGGGTTACAGCGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCA
* ** *
7823094 TCGACAGCGAAGCAGATCAAAGG
66 TTGACAGCGAAGCAGATTGAAGA
* * * * * *
7823117 CACCAACCTTGCCTCCCTGGGTTACAACGGAGCATGTTAAAGATATCAGATCTTGCCTTCCTGTA
1 CACCAGCCTTGCCTCCCTGGGTTACAGCGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCA
* * * *
7823182 TTAACAGTGAAACAGATCGAAGA
66 TTGACAGCGAAGCAGATTGAAGA
* *
7823205 CCCCAGCCTTGCTTCCCTGGGTTACAGCGGAGCAGGTT
1 CACCAGCCTTGCCTCCCTGGGTTACAGCGGAGCAGGTT
7823243 AAAAATTACA
Statistics
Matches: 335, Mismatches: 54, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
87 2 0.01
88 333 0.99
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (88 bp):
CACCAGCCTTGCCTCCCTGGGTTACAGCGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCA
TTGACAGCGAAGCAGATTGAAGA
Found at i:7823618 original size:44 final size:44
Alignment explanation
Indices: 7823299--7823597 Score: 440
Period size: 44 Copynumber: 6.8 Consensus size: 44
7823289 TGACCCCAGC
* *
7823299 CCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGGTTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* *
7823343 CCTATCTCCCTGGTCAGCAGAGGAATAGGTTGAAGATTGAGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* * * * *
7823387 TCTATCTCCTTGGGCAGCAGTGGAATAGATTGAGGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* * *
7823431 TCTATCTCCCTGGGT-AGTAGTGGAATAGATTGAAGATTGTGAAT
1 CCTATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
7823475 CCTATCTCCCTGGTCA-CAGTAGGAATAGGTTGAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGT-GGAATAGGTTGAAGATTGTGAAT
*
7823519 CATATCTCCCTGGTCAGCAGTAGGAATAGGTTGAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGT-GGAATAGGTTGAAGATTGTGAAT
7823564 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAA
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAA
7823598 TATTACAGAT
Statistics
Matches: 231, Mismatches: 20, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
43 6 0.03
44 175 0.76
45 50 0.22
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (44 bp):
CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
Found at i:7824072 original size:127 final size:128
Alignment explanation
Indices: 7823826--7824142 Score: 528
Period size: 127 Copynumber: 2.5 Consensus size: 128
7823816 AAGCAGATCA
*
7823826 AATCTTATCTTCCCCAAGAGTAGGGAAGCAGATTTAAGCCACTGACCTTATCTCCCTGAACAGCA
1 AATCTTATATTCCCCAAGAGTAGGGAAGCAGATTTAAGCCACTGACCTTATCTCCCTG---AGCA
* *
7823891 GTGGAGTAGGTTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGT
63 GTGGAGTAGGTTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGCAGCAGATCGAAGACGGC
7823956 G
128 G
* * *
7823957 AATCTTATATT-CCCAGGAGTAGGGAAACAGATTTAAGCCACTAACCTTATCTCCCTGAGCAGTG
1 AATCTTATATTCCCCAAGAGTAGGGAAGCAGATTTAAGCCACTGACCTTATCTCCCTGAGCAGTG
* *
7824021 GAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGTAGTAGTGCAGCAGATCGAAGACGGCG
66 GAGTAGGTTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGCAGCAGATCGAAGACGGCG
7824084 AATCTTATATTCCCCAAGAGTAGGGAAGCAGATTTAAGCCACTGACCTTATCTCCCTGA
1 AATCTTATATTCCCCAAGAGTAGGGAAGCAGATTTAAGCCACTGACCTTATCTCCCTGA
7824143 AGTTGCAGCG
Statistics
Matches: 174, Mismatches: 11, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
127 77 0.44
128 44 0.25
130 43 0.25
131 10 0.06
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (128 bp):
AATCTTATATTCCCCAAGAGTAGGGAAGCAGATTTAAGCCACTGACCTTATCTCCCTGAGCAGTG
GAGTAGGTTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGCAGCAGATCGAAGACGGCG
Found at i:7824356 original size:50 final size:49
Alignment explanation
Indices: 7824297--7824456 Score: 151
Period size: 50 Copynumber: 3.2 Consensus size: 49
7824287 GAACAGATTA
* *
7824297 AAGCCACAACGGCGAGTCCT-GCTTCCCCGACATTGCAGTTAAAAATATTG
1 AAGCTACAACGGCGAAT-CTAGCTTCCCCGACATTGCAGTTAAAAA-ATTG
* * * **** * *
7824347 AAGCTACAACAGCGAATCTAACTTCCCAGGTGGTGCAGTGGAAAAGATTG
1 AAGCTACAACGGCGAATCTAGCTTCCCCGACATTGCAGT-TAAAAAATTG
*
7824397 AAGCTACAACGGCGAATCTAGCTTCCTCGACATTGCAGTTAAATAAATTG
1 AAGCTACAACGGCGAATCTAGCTTCCCCGACATTGCAGTTAAA-AAATTG
*
7824447 GAGCTGACAA
1 AAGCT-ACAA
7824457 AAGAAATCAA
Statistics
Matches: 84, Mismatches: 22, Indels: 7
0.74 0.19 0.06
Matches are distributed among these distances:
49 5 0.06
50 71 0.85
51 8 0.10
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.22
Consensus pattern (49 bp):
AAGCTACAACGGCGAATCTAGCTTCCCCGACATTGCAGTTAAAAAATTG
Found at i:7824433 original size:100 final size:101
Alignment explanation
Indices: 7824260--7824456 Score: 274
Period size: 100 Copynumber: 2.0 Consensus size: 101
7824250 TGAAAATTAT
* * *
7824260 GAATCTTACTTCCCAAGCGGTGCAGTGGAACAGATTAAAGCCACAACGGCGAGTCCTGCTTCCCC
1 GAATCTAACTTCCCAAGCGGTGCAGTGGAAAAGATTAAAGCCACAACGGCGAATCCTGCTTCCCC
7824325 GACATTGCAGTTAAA-AATATTGAAGCT-ACAACAGC
66 GACATTGCAGTTAAATAA-ATTGAAGCTGACAACAGC
* * * * *
7824360 GAATCTAACTTCCCAGGTGGTGCAGTGGAAAAGATTGAAGCTACAACGGCGAAT-CTAGCTTCCT
1 GAATCTAACTTCCCAAGCGGTGCAGTGGAAAAGATTAAAGCCACAACGGCGAATCCT-GCTTCCC
*
7824424 CGACATTGCAGTTAAATAAATTGGAGCTGACAA
65 CGACATTGCAGTTAAATAAATTGAAGCTGACAA
7824457 AAGAAATCAA
Statistics
Matches: 85, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
99 2 0.02
100 77 0.91
101 6 0.07
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.22
Consensus pattern (101 bp):
GAATCTAACTTCCCAAGCGGTGCAGTGGAAAAGATTAAAGCCACAACGGCGAATCCTGCTTCCCC
GACATTGCAGTTAAATAAATTGAAGCTGACAACAGC
Found at i:7830305 original size:18 final size:18
Alignment explanation
Indices: 7830282--7830342 Score: 68
Period size: 18 Copynumber: 3.1 Consensus size: 18
7830272 CAGATTCAAT
7830282 AAAAAAATCAAAATAAAA
1 AAAAAAATCAAAATAAAA
*
7830300 AAAAAAGTCAAAATTAAAA
1 AAAAAAATCAAAA-TAAAA
7830319 AATAATCAAAGTCAAAATAAAA
1 AA-AA--AAA-TCAAAATAAAA
7830341 AA
1 AA
7830343 TATGAAAATG
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
18 12 0.33
19 7 0.19
20 2 0.06
22 9 0.25
23 6 0.17
ACGTcount: A:0.75, C:0.07, G:0.03, T:0.15
Consensus pattern (18 bp):
AAAAAAATCAAAATAAAA
Found at i:7832588 original size:44 final size:44
Alignment explanation
Indices: 7832539--7832670 Score: 124
Period size: 45 Copynumber: 3.0 Consensus size: 44
7832529 GATAACAGAT
*
7832539 CTTGCCTTCCTGTACTGACAGTGAAGCAGATCGAAGACACCAGC
1 CTTGCCTTCCTGTACTGACAGTGAAGCAGATCGAAGATACCAGC
*** * * * * **
7832583 CTTGCC-TCCTTGGGTTGATAGTGAAGCAG-GCTAAAGATAGCAAAT
1 CTTGCCTTCC-TGTACTGACAGTGAAGCAGATC-GAAGATA-CCAGC
*
7832628 CTTGCCTTCTTGTACTGACAGTGAAGCAGATCGAAGATACCAG
1 CTTGCCTTCCTGTACTGACAGTGAAGCAGATCGAAGATACCAG
7832671 TCCTATCTCC
Statistics
Matches: 64, Mismatches: 19, Indels: 10
0.69 0.20 0.11
Matches are distributed among these distances:
43 4 0.06
44 28 0.44
45 29 0.45
46 3 0.05
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.24
Consensus pattern (44 bp):
CTTGCCTTCCTGTACTGACAGTGAAGCAGATCGAAGATACCAGC
Found at i:7832950 original size:44 final size:44
Alignment explanation
Indices: 7832847--7832970 Score: 160
Period size: 44 Copynumber: 2.8 Consensus size: 44
7832837 AGCTACTAGC
* ** * *
7832847 CTTATCTCCCTGAGCAGCGGTGGAGTAGA-CAGAAGAATTACAAAT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATC-GAAG-ATGACAAAT
7832892 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGACAAAT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGACAAAT
* *
7832936 CTTATCTCCTTAAGCAGTAGTGGAGCAGATTGAAG
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAG
7832971 CTAGTAATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
44 41 0.58
45 29 0.41
46 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.24
Consensus pattern (44 bp):
CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGACAAAT
Found at i:7832985 original size:132 final size:132
Alignment explanation
Indices: 7832701--7832989 Score: 282
Period size: 132 Copynumber: 2.2 Consensus size: 132
7832691 GTGGGATTGG
* * *** * * *
7832701 TTGAAGATAGTAATCCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAGATCATGTCT
1 TTGAAGCTAGTAATCCTATCTCCCTGGTCAGCAGTGGAATAGACAGAAGATTACAAATCATATCT
* * * *
7832766 CCCTAAATAGTAGTGGAACAGATCAAAGACGTCGAATCTTATCTTCCCAAGGTAGTAGGGAAGCA
66 CCCTAAACAGTAGTGGAACAGATCAAAGACGACAAATCTTATCTTCCCAAGGCAGTAGGGAAGCA
7832831 AA
131 AA
* * * * * *
7832833 TTTAAGCTACT-AGCCTTATCTCCCTGAG-CAGCGGTGGAGTAGACAGAAGAATTACAAATCTTA
1 TTGAAGCTAGTAATCC-TATCTCCCTG-GTCAGCAGTGGAATAGACAGAAG-ATTACAAATCATA
* * * * *
7832896 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGACAAATCTTATC-TCCTTAA-GCAGTAGTGG
63 TCTCCCTAAACAGTAGTGGAACAGATCAAAGACGACAAATCTTATCTTCC-CAAGGCAGTAG-GG
*
7832959 -AGCAGA
126 AAGCAAA
7832965 TTGAAGCTAGTAATCCTATCTCCCT
1 TTGAAGCTAGTAATCCTATCTCCCT
7832990 AAAGTTGCAG
Statistics
Matches: 124, Mismatches: 27, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
131 3 0.02
132 65 0.52
133 56 0.45
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (132 bp):
TTGAAGCTAGTAATCCTATCTCCCTGGTCAGCAGTGGAATAGACAGAAGATTACAAATCATATCT
CCCTAAACAGTAGTGGAACAGATCAAAGACGACAAATCTTATCTTCCCAAGGCAGTAGGGAAGCA
AA
Found at i:7833202 original size:44 final size:45
Alignment explanation
Indices: 7833126--7833222 Score: 117
Period size: 44 Copynumber: 2.2 Consensus size: 45
7833116 TCTAAGCAGT
** * *
7833126 AGTGGAGCAGATCGAAGATGGAAAATCTTATCTC-CTTGAGGTTGC
1 AGTGGAGCAGATCGAAGACCGAAAATCCTATCTCTC-TGACGTTGC
* *
7833171 AGTGGAGCAGATTGAAG-CCGATAATCCTATCTCTCTGACGTTGC
1 AGTGGAGCAGATCGAAGACCGAAAATCCTATCTCTCTGACGTTGC
7833215 AGTGGAGC
1 AGTGGAGC
7833223 GAATTAAAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
44 28 0.62
45 17 0.38
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.26
Consensus pattern (45 bp):
AGTGGAGCAGATCGAAGACCGAAAATCCTATCTCTCTGACGTTGC
Found at i:7833288 original size:173 final size:174
Alignment explanation
Indices: 7833109--7834294 Score: 694
Period size: 173 Copynumber: 6.9 Consensus size: 174
7833099 GAAGCAGATA
* *
7833109 TTATCTCTCT-AAGCAGTAGTGGAGCAGATCGAAGATGGAAAATCTTATCTCCTTGAGGTTGCAG
1 TTATCTCTCTGAAGCAGCAGTAGAGCAGATCGAAGATGGAAAATCTTATCTCCTTGAGGTTGCAG
* ** * *
7833173 TGGAGCAGATTGAAGCCGATAATCCTATCTCTCTGACGTTGCAGTGGAGC-GAATTAAAATAATA
66 TGGAGCAGATCGAAGATGATAATCTTATCTCTCTGAGGTTGCAGTGGAGCAG-ATTAAAATAATA
*
7833237 GATCTTATCTCTCTGAAGTTGCAATAGAGTAGATCGCATCAGGTC
130 GATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTC
* ** * * * * * * * ** *
7833282 TTATCTCTCTGAGGTTGCAGCAGAGCAGACCAAAGA-AGCAGATCTTATCTCCTT-AAGCAGTAG
1 TTATCTCTCTGAAGCAGCAGTAGAGCAGATCGAAGATGGAAAATCTTATCTCCTTGAGGTTGCAG
* * * * * ****
7833345 TGAAGCAAATCGAAGATGGCA-AATCTTGTCAC-CTTGAGGTTACAGTGGAGCAGATTGAAGCCG
66 TGGAGCAGATCGAAGAT-G-ATAATCTTATCTCTC-TGAGGTTGCAGTGGAGCAGATT-AAAATA
* * * ** ** *
7833408 ATA-ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACAAT-AGATC
127 ATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGA-T--CGC-ATCAGGTC
** * * ** * * **
7833458 TTATCTCTCTGAAGTTGCAGTAGAGTAGATCG--CAT--AAGGTTTTATCTCCTTAAGCAAT--A
1 TTATCTCTCTGAAGCAGCAGTAGAGCAGATCGAAGATGGAAAATCTTATCTCCTTGAG-GTTGCA
* * * *
7833517 GTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGTGGAGCGGATTAAAATAAT
65 GTGGAGCAGATCGAAGATGAT-AATCTTATCTCTCTGAGGTTGCAGTGGAGCAGATTAAAATAAT
*
7833582 AGATCTTATCTTTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTC
129 AGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTC
* * * ** * *
7833628 TTATCTCCCT-AAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAG
1 TTATCTCTCTGAAGCAGCAGTAGAGCAGATCGAAGATGGAAAATCTTATCTCCTTGAGGTTGCAG
* * * * *
7833692 TGGAGCGGAT-TAAAATGATAGATCTTATTTCTCTGAAGTTGCAGTGGAGCAGATTAAAATAATA
66 TGGAGCAGATCGAAGATGATA-ATCTTATCTCTCTGAGGTTGCAGTGGAGCAGATTAAAATAATA
* *
7833756 GATCTTATCTCTCTGAAGTTGTAGTAAAGTAGATCGCATCAGGTC
130 GATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTC
* * ** * * * * * * * * ** *
7833801 TTACCTC-CTTGAGGTTGTAGCAGAGCAGACCGAAGA-AGCAGATCTTATCTCCCT-AAGCAGTA
1 TTATCTCTC-TGAAGCAGCAGTAGAGCAGATCGAAGATGGAAAATCTTATCTCCTTGAGGTTGCA
* ****
7833863 GTGGAGCAGATCGAAGATGGCA-AATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCCG
65 GTGGAGCAGATCGAAGAT-G-ATAATCTTATCTCTCTGAGGTTGCAGTGGAGCAGATT-AAAATA
* * * ** ** *
7833927 ATA-ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACAAT-AGATC
127 ATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGA-T--CGC-ATCAGGTC
** * ** * * * ** *
7833977 TTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCA-GG----TCTTATATCCCT-AAGCAGTA
1 TTATCTCTCTGAAGCAGCAGTAGAGCAGATCG-AAGATGGAAAATCTTATCTCCTTGAGGTTGCA
* * * * * * *
7834036 GTGGAGCAGATCAAAAAT-AGTGAATCTTATCTCTCTAAGGTTTCAGTGAAGCGGATTAAAACAA
65 GTGGAGCAGATCGAAGATGA-T-AATCTTATCTCTCTGAGGTTGCAGTGGAGCAGATTAAAATAA
*
7834100 TAGATCTTATCTCTCTGAAGTTGTAGTAGAGTAGATCGCATCAGGTC
128 TAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTC
* * * * * ** * *
7834147 TTATCTC-CTTAAGCAGTAGTGGAGCAGATTGAAAATGGTGAATCTTATCTCCCTGAGGTTTCAG
1 TTATCTCTCTGAAGCAGCAGTAGAGCAGATCGAAGATGGAAAATCTTATCTCCTTGAGGTTGCAG
** * * * * * * * * *
7834211 TGGAGTGGAT-TAAAATAATAGATCTTATTTCTCTGAGGTTACAATAGAGTAGA-TCAAAT--TA
66 TGGAGCAGATCGAAGATGATA-ATCTTATCTCTCTGAGGTTGCAGTGGAGCAGATTAAAATAATA
* *
7834272 GATCTTATCTCCCTGAGGTTGCA
130 GATCTTATCTCTCTGAAGTTGCA
7834295 ACGGAGCAGA
Statistics
Matches: 768, Mismatches: 195, Indels: 103
0.72 0.18 0.10
Matches are distributed among these distances:
168 2 0.00
169 39 0.05
170 49 0.06
171 2 0.00
172 53 0.07
173 474 0.62
174 79 0.10
175 1 0.00
176 61 0.08
177 8 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.29
Consensus pattern (174 bp):
TTATCTCTCTGAAGCAGCAGTAGAGCAGATCGAAGATGGAAAATCTTATCTCCTTGAGGTTGCAG
TGGAGCAGATCGAAGATGATAATCTTATCTCTCTGAGGTTGCAGTGGAGCAGATTAAAATAATAG
ATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTC
Found at i:7833463 original size:44 final size:44
Alignment explanation
Indices: 7833387--7834306 Score: 240
Period size: 44 Copynumber: 21.3 Consensus size: 44
7833377 CTTGAGGTTA
** * *
7833387 CAGTGGAGCAGATTGAAGCCGATA-ATCCTATCTCCCTGAAGTTG
1 CAGTGGAGCAGATT-AAAACAATAGATCTTATCTCCCTGAAGTTG
* *
7833431 CAGTGGAGCGGATTAAAACAATAGATCTTATCTCTCTGAAGTTG
1 CAGTGGAGCAGATTAAAACAATAGATCTTATCTCCCTGAAGTTG
* * ** * * * ***
7833475 CAGTAGAGTAGA-T--CGC-ATAAGGTTTTATCT-CCTTAAGCAA
1 CAGTGGAGCAGATTAAAACAAT-AGATCTTATCTCCCTGAAGTTG
* * * *** * *
7833515 TAGTGGAGCAGATCGAAGATGGT-GAATCTTATCTCCCTGAGGTTT
1 CAGTGGAGCAGAT-TAAAACAATAG-ATCTTATCTCCCTGAAGTTG
* * **
7833560 CAGTGGAGCGGATTAAAATAATAGATCTTATCTTTCTGAAGTTG
1 CAGTGGAGCAGATTAAAACAATAGATCTTATCTCCCTGAAGTTG
* * ** * **
7833604 CAGTAGAGTAGA-T--CGC-ATCAGGTCTTATCTCCCT-AAGCAG
1 CAGTGGAGCAGATTAAAACAAT-AGATCTTATCTCCCTGAAGTTG
* * * *** * *
7833644 TAGTGGAGCAGATCGAAGATGGT-GAATCTTATCTCCCTGAGGTTT
1 CAGTGGAGCAGAT-TAAAACAATAG-ATCTTATCTCCCTGAAGTTG
* ** * *
7833689 CAGTGGAGCGGATTAAAATGATAGATCTTATTTCTCTGAAGTTG
1 CAGTGGAGCAGATTAAAACAATAGATCTTATCTCCCTGAAGTTG
* *
7833733 CAGTGGAGCAGATTAAAATAATAGATCTTATCTCTCTGAAGTTG
1 CAGTGGAGCAGATTAAAACAATAGATCTTATCTCCCTGAAGTTG
* ** * ** * * * *
7833777 TAGTAAAGTAGA-T--CGC-ATCAGGTCTTACCTCCTTGAGGTTG
1 CAGTGGAGCAGATTAAAACAAT-AGATCTTATCTCCCTGAAGTTG
* ** ** * ** **
7833818 TAGCAGAGCAGACCGAAGA-AGCAGATCTTATCTCCCT-AAGCAG
1 CAGTGGAGCAGA-TTAAAACAATAGATCTTATCTCCCTGAAGTTG
* * * **** * *
7833861 TAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGGTTG
1 CAGTGGAGCAGAT-TAAAACAATAGATCTTATCTCCCTGAAGTTG
** * *
7833906 CAGTGGAGCAGATTGAAGCCGATA-ATCCTATCTCCCTGAAGTTG
1 CAGTGGAGCAGATT-AAAACAATAGATCTTATCTCCCTGAAGTTG
* *
7833950 CAGTGGAGCGGATTAAAACAATAGATCTTATCTCTCTGAAGTTG
1 CAGTGGAGCAGATTAAAACAATAGATCTTATCTCCCTGAAGTTG
* * ** * * **
7833994 CAGTAGAGTAGA-T--CGC-ATCAGGTCTTATATCCCT-AAGCAG
1 CAGTGGAGCAGATTAAAACAAT-AGATCTTATCTCCCTGAAGTTG
* * * *
7834034 TAGTGGAGCAGA-TCAAA-AATAGTGAATCTTATCTCTCT-AAGGTTT
1 CAGTGGAGCAGATTAAAACAATA--G-ATCTTATCTCCCTGAA-GTTG
* * *
7834079 CAGTGAAGCGGATTAAAACAATAGATCTTATCTCTCTGAAGTTG
1 CAGTGGAGCAGATTAAAACAATAGATCTTATCTCCCTGAAGTTG
* * * ** * * **
7834123 TAGTAGAGTAGA-T--CGC-ATCAGGTCTTATCT-CCTTAAGCAG
1 CAGTGGAGCAGATTAAAACAAT-AGATCTTATCTCCCTGAAGTTG
* *** * *
7834163 TAGTGGAGCAGATTGAAAATGGT-GAATCTTATCTCCCTGAGGTTT
1 CAGTGGAGCAGATT-AAAACAATAG-ATCTTATCTCCCTGAAGTTG
** * * * * *
7834208 CAGTGGAGTGGATTAAAATAATAGATCTTATTTCTCTGAGGTTA
1 CAGTGGAGCAGATTAAAACAATAGATCTTATCTCCCTGAAGTTG
* * * * * *
7834252 CAATAGAGTAGA-T-CAA-ATTAGATCTTATCTCCCTGAGGTTG
1 CAGTGGAGCAGATTAAAACAATAGATCTTATCTCCCTGAAGTTG
**
7834293 CAACGGAGCAGATT
1 CAGTGGAGCAGATT
7834307 GAGGAAGCAA
Statistics
Matches: 629, Mismatches: 196, Indels: 104
0.68 0.21 0.11
Matches are distributed among these distances:
40 67 0.11
41 104 0.17
42 5 0.01
43 40 0.06
44 321 0.51
45 84 0.13
46 4 0.01
47 4 0.01
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (44 bp):
CAGTGGAGCAGATTAAAACAATAGATCTTATCTCCCTGAAGTTG
Found at i:7833550 original size:217 final size:215
Alignment explanation
Indices: 7832890--7833507 Score: 938
Period size: 217 Copynumber: 2.9 Consensus size: 215
7832880 AGAATTACAA
* * *
7832890 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGACAAATCTTATCTCCTTAAGCAG-T
1 ATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCTTGAG--GTT
* *
7832954 -AGTGGAGCAGATTGAAG-CTAGTAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAATA
64 CAGTGGAGCAGATTGAAGCCGA-TAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATA
* *
7833017 ATAGATCTTATCTATCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTTTCATCTTCCTGAGGTTG
128 ATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTTTTATC-TCCTGAGGTTG
7833082 CAGCGGAGCAGACCGAAGAAGCAG
192 CAGCGGAGCAGACCGAAGAAGCAG
* *
7833106 ATATTATCT-CTCTAAGCAGTAGTGGAGCAGATCGAAGATGGAAAATCTTATCTCCTTGAGGTTG
1 ATCTTATCTCCT-TAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCTTGAGGTT-
* * *
7833170 CAGTGGAGCAGATTGAAGCCGATAATCCTATCTCTCTGACGTTGCAGTGGAGCGAATTAAAATAA
64 CAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAA
* *
7833235 TAGATCTTATCTCTCTGAAGTTGCAATAGAGTAGATCGCATCAGGTCTTATCTCTCTGAGGTTGC
129 TAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTTTTATCTC-CTGAGGTTGC
* *
7833300 AGCAGAGCAGACCAAAGAAGCAG
193 AGCGGAGCAGACCGAAGAAGCAG
* * * *
7833323 ATCTTATCTCCTTAAGCAGTAGTGAAGCAAATCGAAGATGGCAAATCTTGTCACCTTGAGGTTAC
1 ATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCTTGAGGTT-C
*
7833388 AGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACAAT
65 AGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAAT
*
7833453 AGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATAAGGTTTTATCTCCT
130 AGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTTTTATCTCCT
7833508 TAAGCAATAG
Statistics
Matches: 365, Mismatches: 30, Indels: 14
0.89 0.07 0.03
Matches are distributed among these distances:
214 1 0.00
215 2 0.01
216 57 0.16
217 301 0.82
218 4 0.01
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (215 bp):
ATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCTTGAGGTTCA
GTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAATA
GATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTTTTATCTCCTGAGGTTGCAGC
GGAGCAGACCGAAGAAGCAG
Found at i:7833570 original size:129 final size:129
Alignment explanation
Indices: 7833388--7834285 Score: 871
Period size: 129 Copynumber: 6.9 Consensus size: 129
7833378 TTGAGGTTAC
* ** * * * *
7833388 AGTGGAGCAGATTGAAGCCGAT-AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACAA
1 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGTGGAGCGGATTAAAACAA
* * *
7833452 TAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATAAGGTTTTATCTCCTTAAGCAAT
66 TAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATAAGGTCTTATCTCCCTAAGCAGT
*
7833516 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGTGGAGCGGATTAAAATAA
1 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGTGGAGCGGATTAAAACAA
* *
7833581 TAGATCTTATCTTTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTAAGCAGT
66 TAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATAAGGTCTTATCTCCCTAAGCAGT
**
7833645 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGTGGAGCGGATTAAAATGA
1 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGTGGAGCGGATTAAAACAA
* * * *** * * *
7833710 TAGATCTTATTTCTCTGAAGTTGCAGTGGAGCAGATTAAAATAATAGATCTTATCTCTCTGAAGT
66 TAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGA-TCGCAT-A-AGGTCTTATCTCCCT-AAGC
*
7833775 TGT
127 AGT
** * * * * * ** * ** *
7833778 AGTAAAGTAGATCG--CATCAG-G--TCTTACCTCCTTGAGGTTGT-AGCAGAGCAGACCGAAGA
1 AGTGGAGCAGATCGAAGAT-GGTGAATCTTATCTCCCTGAGGTT-TCAGTGGAGCGGA-TTAAAA
** * ** * * * * * *
7833837 -AGCAGATCTTATCTCCCT-AAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCCTG
63 CAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATAAGG----TCTTATCTCCCT-
* ** *
7833900 AGGTTGC
123 AAGCAGT
* ** * * * *
7833907 AGTGGAGCAGATTGAAGCCGAT-AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACAA
1 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGTGGAGCGGATTAAAACAA
* *
7833971 TAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATATCCCTAAGCAGT
66 TAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATAAGGTCTTATCTCCCTAAGCAGT
* * * * * *
7834035 AGTGGAGCAGATCAAAAATAGTGAATCTTATCTCTCTAAGGTTTCAGTGAAGCGGATTAAAACAA
1 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGTGGAGCGGATTAAAACAA
* * *
7834100 TAGATCTTATCTCTCTGAAGTTGTAGTAGAGTAGATCGCATCAGGTCTTATCTCCTTAAGCAGT
66 TAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATAAGGTCTTATCTCCCTAAGCAGT
* * * *
7834164 AGTGGAGCAGATTGAAAATGGTGAATCTTATCTCCCTGAGGTTTCAGTGGAGTGGATTAAAATAA
1 AGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGTGGAGCGGATTAAAACAA
* * * * ** * *
7834229 TAGATCTTATTTCTCTGAGGTTACAATAGAGTAGATCAAATTAGATCTTATCTCCCT
66 TAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATAAGGTCTTATCTCCCT
7834286 GAGGTTGCAA
Statistics
Matches: 623, Mismatches: 126, Indels: 41
0.79 0.16 0.05
Matches are distributed among these distances:
125 1 0.00
126 1 0.00
127 3 0.00
128 51 0.08
129 468 0.75
130 7 0.01
131 6 0.01
132 51 0.08
133 35 0.06
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (129 bp):
AGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGTGGAGCGGATTAAAACAA
TAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATAAGGTCTTATCTCCCTAAGCAGT
Found at i:7833947 original size:217 final size:217
Alignment explanation
Indices: 7833626--7834020 Score: 648
Period size: 217 Copynumber: 1.8 Consensus size: 217
7833616 TCGCATCAGG
** *
7833626 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGGTTGCA
* * * * * *
7833691 GTGGAGCGGATTAAAATGATAGATCTTATTTCTCTGAAGTTGCAGTGGAGCAGATTAAAATAATA
66 GTGGAGCAGATTAAAACGATAGATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACAATA
*
7833756 GATCTTATCTCTCTGAAGTTGTAGTAAAGTAGATCGCATCAGGTCTTACCTCCTTGAGGTTGTAG
131 GATCTTATCTCTCTGAAGTTGCAGTAAAGTAGATCGCATCAGGTCTTACCTCCTTGAGGTTGTAG
7833821 CAGAGCAGACCGAAGAAGCAGA
196 CAGAGCAGACCGAAGAAGCAGA
7833843 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGGTTGCA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGGTTGCA
** *
7833908 GTGGAGCAGATTGAAGCCGATA-ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACAAT
66 GTGGAGCAGATT-AAAACGATAGATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACAAT
*
7833972 AGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTA
130 AGATCTTATCTCTCTGAAGTTGCAGTAAAGTAGATCGCATCAGGTCTTA
7834021 TATCCCTAAG
Statistics
Matches: 163, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
217 157 0.96
218 6 0.04
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28
Consensus pattern (217 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGGTTGCA
GTGGAGCAGATTAAAACGATAGATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACAATA
GATCTTATCTCTCTGAAGTTGCAGTAAAGTAGATCGCATCAGGTCTTACCTCCTTGAGGTTGTAG
CAGAGCAGACCGAAGAAGCAGA
Found at i:7833960 original size:519 final size:519
Alignment explanation
Indices: 7833109--7834246 Score: 1832
Period size: 519 Copynumber: 2.2 Consensus size: 519
7833099 GAAGCAGATA
* ** * *
7833109 TTATCTCTCTAAGCAGTAGTGGAGCAGATCGAAGATGGAAAATCTTATCTCCTTGAGGTTGCAGT
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGT
* *** * * *
7833174 GGAGCAGATTGAAGCCGATA-ATCCTATCTCTCTGACGTTGCAGTGGAGCGAATTAAAATAATAG
66 GGAGCGGATT-AAAATGATAGATCTTATTTCTCTGAAGTTGCAGTGGAGCGAATTAAAATAATAG
* *
7833238 ATCTTATCTCTCTGAAGTTGCAATAGAGTAGATCGCATCAGGTCTTATCTCTCTGAGGTTGCAGC
130 ATCTTATCTCTCTGAAGTTGCAATAAAGTAGATCGCATCAGGTCTTACCTCTCTGAGGTTGCAGC
*
7833303 AGAGCAGACCAAAGAAGCAGATCTTATCTCCTTAAGCAGTAGTGAAGCAAATCGAAGATGGCAAA
195 AGAGCAGACCAAAGAAGCAGATCTTATCTCCCTAAGCAGTAGTGAAGCAAATCGAAGATGGCAAA
* *
7833368 TCTTGTCACCTTGAGGTTACAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGCA
260 TCTTATCACCCTGAGGTTACAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGCA
7833433 GTGGAGCGGATTAAAACAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATAAGGT
325 GTGGAGCGGATTAAAACAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATAAGGT
* * * * * * *
7833498 TTTATCTCCTTAAGCAATAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAG
390 CTTATATCCCTAAGCAATAGTGGAGCAGATCAAAAATAGTGAATCTTATCTCCCTAAGGTTTCAG
* * *
7833563 TGGAGCGGATTAAAATAATAGATCTTATCTTTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTC
455 TGAAGCGGATTAAAACAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTC
7833628 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGT
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGT
7833693 GGAGCGGATTAAAATGATAGATCTTATTTCTCTGAAGTTGCAGTGGAGC-AGATTAAAATAATAG
66 GGAGCGGATTAAAATGATAGATCTTATTTCTCTGAAGTTGCAGTGGAGCGA-ATTAAAATAATAG
* * *
7833757 ATCTTATCTCTCTGAAGTTGTAGTAAAGTAGATCGCATCAGGTCTTACCTC-CTTGAGGTTGTAG
130 ATCTTATCTCTCTGAAGTTGCAATAAAGTAGATCGCATCAGGTCTTACCTCTC-TGAGGTTGCAG
* * *
7833821 CAGAGCAGACCGAAGAAGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAA
194 CAGAGCAGACCAAAGAAGCAGATCTTATCTCCCTAAGCAGTAGTGAAGCAAATCGAAGATGGCAA
* *
7833886 ATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGC
259 ATCTTATCACCCTGAGGTTACAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGC
*
7833951 AGTGGAGCGGATTAAAACAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGG
324 AGTGGAGCGGATTAAAACAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATAAGG
* *
7834016 TCTTATATCCCTAAGCAGTAGTGGAGCAGATCAAAAATAGTGAATCTTATCTCTCTAAGGTTTCA
389 TCTTATATCCCTAAGCAATAGTGGAGCAGATCAAAAATAGTGAATCTTATCTCCCTAAGGTTTCA
*
7834081 GTGAAGCGGATTAAAACAATAGATCTTATCTCTCTGAAGTTGTAGTAGAGTAGATCGCATCAGGT
454 GTGAAGCGGATTAAAACAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGT
7834146 C
519 C
* * *
7834147 TTATCTCCTTAAGCAGTAGTGGAGCAGATTGAAAATGGTGAATCTTATCTCCCTGAGGTTTCAGT
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGT
* *
7834212 GGAGTGGATTAAAATAATAGATCTTATTTCTCTGA
66 GGAGCGGATTAAAATGATAGATCTTATTTCTCTGA
7834247 GGTTACAATA
Statistics
Matches: 572, Mismatches: 44, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
518 8 0.01
519 564 0.99
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.29
Consensus pattern (519 bp):
TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCAGT
GGAGCGGATTAAAATGATAGATCTTATTTCTCTGAAGTTGCAGTGGAGCGAATTAAAATAATAGA
TCTTATCTCTCTGAAGTTGCAATAAAGTAGATCGCATCAGGTCTTACCTCTCTGAGGTTGCAGCA
GAGCAGACCAAAGAAGCAGATCTTATCTCCCTAAGCAGTAGTGAAGCAAATCGAAGATGGCAAAT
CTTATCACCCTGAGGTTACAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGCAG
TGGAGCGGATTAAAACAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATAAGGTC
TTATATCCCTAAGCAATAGTGGAGCAGATCAAAAATAGTGAATCTTATCTCCCTAAGGTTTCAGT
GAAGCGGATTAAAACAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTC
Found at i:7834065 original size:217 final size:217
Alignment explanation
Indices: 7833626--7834074 Score: 607
Period size: 217 Copynumber: 2.1 Consensus size: 217
7833616 TCGCATCAGG
** *
7833626 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCCTGAGGTTTCA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGGTTGCA
* * * * * *
7833691 GTGGAGCGGATTAAAATGATAGATCTTATTTCTCTGAAGTTGCAGTGGAGCAGATTAAAATAATA
66 GTGGAGCAGATTAAAACGATAGATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACAATA
* * * * **
7833756 GATCTTATCTCTCTGAAGTTGTAGTAAAGTAGATCGCATCAGGTCTTACCTCCTTGAGGTTGTAG
131 GATCTTATCTCTCTGAAGTTGCAGTAAAGTAGATCGCATCAGGTCTTACATCCCTGAAGCAGTAG
* *
7833821 CAGAGCAGACCGAAGAAGCAGA
196 CAGAGCAGACCAAAAAAGCAGA
7833843 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGGTTGCA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGGTTGCA
** *
7833908 GTGGAGCAGATTGAAGCCGATA-ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACAAT
66 GTGGAGCAGATT-AAAACGATAGATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACAAT
* *
7833972 AGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATATCCCT-AAGCAGTA
130 AGATCTTATCTCTCTGAAGTTGCAGTAAAGTAGATCGCATCAGGTCTTACATCCCTGAAGCAGTA
** * *
7834036 GTGGAGCAGATCAAAAATAG-TGAA
195 GCAGAGCAGACCAAAAA-AGCAG-A
*
7834060 TCTTATCTCTCTAAG
1 TCTTATCTCCCTAAG
7834075 GTTTCAGTGA
Statistics
Matches: 202, Mismatches: 27, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
216 18 0.09
217 178 0.88
218 6 0.03
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (217 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGGTTGCA
GTGGAGCAGATTAAAACGATAGATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACAATA
GATCTTATCTCTCTGAAGTTGCAGTAAAGTAGATCGCATCAGGTCTTACATCCCTGAAGCAGTAG
CAGAGCAGACCAAAAAAGCAGA
Found at i:7835996 original size:23 final size:22
Alignment explanation
Indices: 7835964--7836011 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 22
7835954 TATGTTGATG
7835964 TTTTAAATCTATTATATATT-TTA
1 TTTTAAATCTA--ATATATTATTA
*
7835987 TTTTATATCTAATATATTATTA
1 TTTTAAATCTAATATATTATTA
7836009 TTT
1 TTT
7836012 ATTTCATCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 7 0.30
22 6 0.26
23 10 0.43
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (22 bp):
TTTTAAATCTAATATATTATTA
Found at i:7843496 original size:14 final size:14
Alignment explanation
Indices: 7843477--7843506 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7843467 TTTGGGAATC
7843477 GATCAATGACGTAA
1 GATCAATGACGTAA
*
7843491 GATCAATGATGTAA
1 GATCAATGACGTAA
7843505 GA
1 GA
7843507 AATGCGGACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.10, G:0.23, T:0.23
Consensus pattern (14 bp):
GATCAATGACGTAA
Found at i:7845540 original size:9 final size:9
Alignment explanation
Indices: 7845528--7845638 Score: 53
Period size: 10 Copynumber: 11.4 Consensus size: 9
7845518 ATTTTAAATA
7845528 TTTTTATA-
1 TTTTTATAT
7845536 TTTTTATATT
1 TTTTTATA-T
*
7845546 TTTTTACAAT
1 TTTTTA-TAT
7845556 TTTTATATAT
1 TTTT-TATAT
*
7845566 TTTTAATAT
1 TTTTTATAT
**
7845575 TTTCTTGCACT
1 TTT-TTATA-T
*
7845586 TTTTATAATTT
1 TTTT-T-ATAT
*
7845597 TTTTTACAT
1 TTTTTATAT
*
7845606 TTGTTATGAT
1 TTTTTAT-AT
* *
7845616 TTTCTATAA
1 TTTTTATAT
7845625 TTTTTATGAT
1 TTTTTAT-AT
7845635 TTTT
1 TTTT
7845639 AACAATTTTA
Statistics
Matches: 75, Mismatches: 18, Indels: 18
0.68 0.16 0.16
Matches are distributed among these distances:
8 8 0.11
9 21 0.28
10 33 0.44
11 13 0.17
ACGTcount: A:0.23, C:0.05, G:0.04, T:0.68
Consensus pattern (9 bp):
TTTTTATAT
Found at i:7845570 original size:10 final size:10
Alignment explanation
Indices: 7845519--7845577 Score: 63
Period size: 9 Copynumber: 6.3 Consensus size: 10
7845509 ATATATAAAA
*
7845519 TTTTAAATA-
1 TTTTATATAT
7845528 TTTT-TATAT
1 TTTTATATAT
*
7845537 TTTTATATTT
1 TTTTATATAT
*
7845547 TTTTACA-AT
1 TTTTATATAT
7845556 TTTTATATAT
1 TTTTATATAT
7845566 TTTTA-ATAT
1 TTTTATATAT
7845575 TTT
1 TTT
7845578 CTTGCACTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
8 3 0.07
9 22 0.52
10 17 0.40
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTTATATAT
Found at i:7845576 original size:19 final size:19
Alignment explanation
Indices: 7845519--7845577 Score: 77
Period size: 19 Copynumber: 3.2 Consensus size: 19
7845509 ATATATAAAA
*
7845519 TTTTAAATATTTTT-ATAT
1 TTTTATATATTTTTAATAT
*
7845537 TTTTATATTTTTTTACA-AT
1 TTTTATATATTTTTA-ATAT
7845556 TTTTATATATTTTTAATAT
1 TTTTATATATTTTTAATAT
7845575 TTT
1 TTT
7845578 CTTGCACTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
18 13 0.37
19 21 0.60
20 1 0.03
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTTATATATTTTTAATAT
Found at i:7845599 original size:30 final size:28
Alignment explanation
Indices: 7845527--7845599 Score: 85
Period size: 30 Copynumber: 2.5 Consensus size: 28
7845517 AATTTTAAAT
*
7845527 ATTTTTATA-TTTTTATATTTTTTTACA
1 ATTTTTATATTTTTTATATTTTCTTACA
*
7845554 ATTTTTATATATTTTTAATATTTTCTTGCA
1 ATTTTTATAT-TTTTT-ATATTTTCTTACA
*
7845584 CTTTTTATAATTTTTT
1 ATTTTTAT-ATTTTTT
7845600 TTACATTTGT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
27 9 0.23
29 5 0.13
30 23 0.59
31 2 0.05
ACGTcount: A:0.25, C:0.05, G:0.01, T:0.68
Consensus pattern (28 bp):
ATTTTTATATTTTTTATATTTTCTTACA
Found at i:7845631 original size:19 final size:20
Alignment explanation
Indices: 7845527--7845637 Score: 72
Period size: 19 Copynumber: 5.7 Consensus size: 20
7845517 AATTTTAAAT
*
7845527 ATTTTTAT-ATTTT-TATAT
1 ATTTTTATGATTTTCTATAC
* ** *
7845545 TTTTTTACAATTTT-TATAT
1 ATTTTTATGATTTTCTATAC
*
7845564 ATTTTTAAT-ATTTTCT-TGC
1 ATTTTT-ATGATTTTCTATAC
* * *
7845583 ACTTTTTATAATTTTTTTTAC
1 A-TTTTTATGATTTTCTATAC
7845604 ATTTGTTATGATTTTCTATA-
1 ATTT-TTATGATTTTCTATAC
7845624 ATTTTTATGATTTT
1 ATTTTTATGATTTT
7845638 TAACAATTTT
Statistics
Matches: 75, Mismatches: 11, Indels: 13
0.76 0.11 0.13
Matches are distributed among these distances:
18 6 0.08
19 34 0.45
20 20 0.27
21 15 0.20
ACGTcount: A:0.24, C:0.05, G:0.04, T:0.67
Consensus pattern (20 bp):
ATTTTTATGATTTTCTATAC
Found at i:7845645 original size:19 final size:19
Alignment explanation
Indices: 7845604--7845647 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
7845594 TTTTTTTTAC
*
7845604 ATTTGTTATGATTTTCTATA
1 ATTT-TTATGATTTTCTACA
7845624 ATTTTTATGATTTT-TAACA
1 ATTTTTATGATTTTCT-ACA
7845643 ATTTT
1 ATTTT
7845648 AAACAGAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 17 0.77
20 4 0.18
ACGTcount: A:0.27, C:0.05, G:0.07, T:0.61
Consensus pattern (19 bp):
ATTTTTATGATTTTCTACA
Found at i:7846237 original size:25 final size:25
Alignment explanation
Indices: 7846203--7846258 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
7846193 TTCAAAAAAT
* * *
7846203 AAATATATTTATTATATATTATAAA
1 AAATAAATTTATTATAAATAATAAA
* *
7846228 AAATAAATTTATTTTAAATAATTAA
1 AAATAAATTTATTATAAATAATAAA
7846253 AAATAA
1 AAATAA
7846259 TATAATATAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (25 bp):
AAATAAATTTATTATAAATAATAAA
Found at i:7848528 original size:25 final size:25
Alignment explanation
Indices: 7848460--7848573 Score: 101
Period size: 25 Copynumber: 4.6 Consensus size: 25
7848450 GCAGACACAC
*
7848460 CACAGCTCGTATGAGCTTACCTATT
1 CACAGCTCGTATGAGCTTACCGATT
* *
7848485 -TCAGCTCGTAAGAGCTTACCGATT
1 CACAGCTCGTATGAGCTTACCGATT
* *
7848509 CACAGCTTGTATGAGATTACCGATAT
1 CACAGCTCGTATGAGCTTACCGAT-T
* * *
7848535 -TCAGCTCGGAGGAGCTTACCG-TT
1 CACAGCTCGTATGAGCTTACCGATT
*
7848558 TATC-GCTCGTATGAGC
1 CA-CAGCTCGTATGAGC
7848574 ATAGATGTAC
Statistics
Matches: 70, Mismatches: 15, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
23 1 0.01
24 32 0.46
25 36 0.51
26 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.30
Consensus pattern (25 bp):
CACAGCTCGTATGAGCTTACCGATT
Found at i:7848570 original size:49 final size:49
Alignment explanation
Indices: 7848460--7848572 Score: 140
Period size: 49 Copynumber: 2.3 Consensus size: 49
7848450 GCAGACACAC
* * *
7848460 CACAGCTCGTATGAGCTTACCTATTTCAGCTCGTAAGAGCTTACCGATT
1 CACAGCTCGTATGAGATTACCGATTTCAGCTCGGAAGAGCTTACCGATT
* *
7848509 CACAGCTTGTATGAGATTACCGATATTCAGCTCGGAGGAGCTTACCG-TT
1 CACAGCTCGTATGAGATTACCGAT-TTCAGCTCGGAAGAGCTTACCGATT
*
7848558 TATC-GCTCGTATGAG
1 CA-CAGCTCGTATGAG
7848573 CATAGATGTA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
49 34 0.62
50 21 0.38
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (49 bp):
CACAGCTCGTATGAGATTACCGATTTCAGCTCGGAAGAGCTTACCGATT
Found at i:7854458 original size:27 final size:27
Alignment explanation
Indices: 7854422--7854488 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 27
7854412 ATAGAGCATG
*
7854422 CAGTTATTTTATAACATAGGGGCATAA
1 CAGTCATTTTATAACATAGGGGCATAA
** * *
7854449 CAGTCATTTTACCACGTGGGGGCATAA
1 CAGTCATTTTATAACATAGGGGCATAA
*
7854476 CGGTCATTTTATA
1 CAGTCATTTTATA
7854489 TCAGTTTGGG
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (27 bp):
CAGTCATTTTATAACATAGGGGCATAA
Found at i:7858755 original size:24 final size:24
Alignment explanation
Indices: 7858685--7858749 Score: 96
Period size: 24 Copynumber: 2.7 Consensus size: 24
7858675 GGACACACCA
7858685 CAGCTCGT-ATGAGCTTACCGATTT
1 CAGCTCGTGA-GAGCTTACCGATTT
* *
7858709 TAGCTCGTGAGAACTTACCGATTT
1 CAGCTCGTGAGAGCTTACCGATTT
7858733 CAGCTCGTGAGAGCTTA
1 CAGCTCGTGAGAGCTTA
7858750 TTGATTCACA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
24 35 0.97
25 1 0.03
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (24 bp):
CAGCTCGTGAGAGCTTACCGATTT
Found at i:7866492 original size:17 final size:17
Alignment explanation
Indices: 7866470--7866503 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
7866460 AATATTGCAC
7866470 TTAGGGCTTTAGAATTG
1 TTAGGGCTTTAGAATTG
7866487 TTAGGGCTTTAGAATTG
1 TTAGGGCTTTAGAATTG
7866504 CTATGGGCAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.06, G:0.29, T:0.41
Consensus pattern (17 bp):
TTAGGGCTTTAGAATTG
Found at i:7868484 original size:17 final size:17
Alignment explanation
Indices: 7868451--7868484 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7868441 TTAATGAGCT
*
7868451 TCTTACAATCAATTATC
1 TCTTACAATCAAGTATC
*
7868468 TCTTACAATCACGTATC
1 TCTTACAATCAAGTATC
7868485 ATGTACACGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.32, C:0.26, G:0.03, T:0.38
Consensus pattern (17 bp):
TCTTACAATCAAGTATC
Found at i:7871077 original size:19 final size:19
Alignment explanation
Indices: 7871053--7871089 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
7871043 AGTAAATTAT
*
7871053 TTTAGTTTATTTTATTTTA
1 TTTAGTTTACTTTATTTTA
7871072 TTTAGTTTACTTTATTTT
1 TTTAGTTTACTTTATTTT
7871090 TCTCGTTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.19, C:0.03, G:0.05, T:0.73
Consensus pattern (19 bp):
TTTAGTTTACTTTATTTTA
Found at i:7873363 original size:23 final size:22
Alignment explanation
Indices: 7873337--7873379 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
7873327 TTTAATTAAT
7873337 GCAAATGAAAACAAAACCATGTA
1 GCAAAT-AAAACAAAACCATGTA
* *
7873360 GCAACTCAAACAAAACCATG
1 GCAAATAAAACAAAACCATG
7873380 ATGTAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.53, C:0.23, G:0.12, T:0.12
Consensus pattern (22 bp):
GCAAATAAAACAAAACCATGTA
Found at i:7878535 original size:17 final size:16
Alignment explanation
Indices: 7878503--7878542 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
7878493 TAATTTATTA
7878503 AATAAAA-ATGATTTT
1 AATAAAATATGATTTT
*
7878518 AATTAAAATATTATTTT
1 AA-TAAAATATGATTTT
7878535 AATAAAAT
1 AATAAAAT
7878543 GCTTAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 2 0.09
16 11 0.50
17 9 0.41
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (16 bp):
AATAAAATATGATTTT
Found at i:7885903 original size:30 final size:32
Alignment explanation
Indices: 7885861--7885920 Score: 97
Period size: 30 Copynumber: 1.9 Consensus size: 32
7885851 TGGGGTGGGA
*
7885861 TGGGAGGAGAGTAAAAGTTTTGGG-GAAAAAG
1 TGGGAGGAGAGTAAAAGTATTGGGAGAAAAAG
7885892 TGGGAGG-GAGTAAAAGTATTGGGAGAAAA
1 TGGGAGGAGAGTAAAAGTATTGGGAGAAAA
7885921 TAAAAAGGCT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 15 0.56
31 12 0.44
ACGTcount: A:0.40, C:0.00, G:0.42, T:0.18
Consensus pattern (32 bp):
TGGGAGGAGAGTAAAAGTATTGGGAGAAAAAG
Found at i:7887217 original size:233 final size:233
Alignment explanation
Indices: 7886805--7887253 Score: 763
Period size: 233 Copynumber: 1.9 Consensus size: 233
7886795 GTTGTTGTCT
*
7886805 AGTAACCAAGATGCATATACATTCGGAAAAAGGAACCAAAACAACATTAATTTTGTCAAGGAAAT
1 AGTAACCAAGATGCATATACATTCGGAAAAAGGAACCAAAACAACATTAATCTTGTCAAGGAAAT
* *
7886870 TTAAGCCAAGAACATAGTTGTAATCATCCTAGTGAATTACCTTGAAGTCTTCCTTGCCTTTCTAT
66 TTAAGCCAAGAACATAGTTGTAATCATCCAAGTGAATTACCTCGAAGTCTTCCTTGCCTTTCTAT
* * * *
7886935 TGACCAATCCATAGCTCAACTCTTTCTACTACTTTCACAATTGGGACCTCTTTGGAATCTTTATC
131 TGACCAATCCATAGCTCAACCCCTTCTACTACTCTCACAATTGGGACCTCTTTGGAATCATTATC
7887000 TTTTTAGTTAATTCATTAACTAAAACATCAATCTTGTG
196 TTTTTAGTTAATTCATTAACTAAAACATCAATCTTGTG
* * *
7887038 AGTATCCAAGATGCATATACATTTGGCAAAAGGAACCAAAACAACATTAATCTTGTCAAGGAAAT
1 AGTAACCAAGATGCATATACATTCGGAAAAAGGAACCAAAACAACATTAATCTTGTCAAGGAAAT
*
7887103 TTAAGCCAAGAACATAGTTGTAATCATCCAAGTGAATTACCTCGAAGTCTTTCTTGCCTTTCTAT
66 TTAAGCCAAGAACATAGTTGTAATCATCCAAGTGAATTACCTCGAAGTCTTCCTTGCCTTTCTAT
* **
7887168 TGACCAATCCATAGCTCAACCCCTTCTGCTACTCTCACGGTTGGGACCTCTTTGGAATCATTATC
131 TGACCAATCCATAGCTCAACCCCTTCTACTACTCTCACAATTGGGACCTCTTTGGAATCATTATC
*
7887233 TTTTTAGTTTATTCATTAACT
196 TTTTTAGTTAATTCATTAACT
7887254 GAGAGACCAA
Statistics
Matches: 201, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
233 201 1.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.33
Consensus pattern (233 bp):
AGTAACCAAGATGCATATACATTCGGAAAAAGGAACCAAAACAACATTAATCTTGTCAAGGAAAT
TTAAGCCAAGAACATAGTTGTAATCATCCAAGTGAATTACCTCGAAGTCTTCCTTGCCTTTCTAT
TGACCAATCCATAGCTCAACCCCTTCTACTACTCTCACAATTGGGACCTCTTTGGAATCATTATC
TTTTTAGTTAATTCATTAACTAAAACATCAATCTTGTG
Found at i:7889289 original size:59 final size:58
Alignment explanation
Indices: 7889181--7889313 Score: 166
Period size: 59 Copynumber: 2.3 Consensus size: 58
7889171 ACCATACTAG
* *
7889181 TAGTCACTCAACTATTAGTATTTTTTTTTTGATATCCCAACTATAAAAAGTTATAAAA
1 TAGTCACTCAACTATTAGTATTTCTTTTTTGATATCCCAACTATAAAAAGTTACAAAA
*
7889239 -AGGTCACTCAACTATTAGTAAATTTCTTTTTTG-TCA-CCCAACTATGAAAAGTTACAAAA
1 TA-GTCACTCAACTATTAGT--ATTTCTTTTTTGAT-ATCCCAACTATAAAAAGTTACAAAA
7889298 TAGTCAC-CTAACTATT
1 TAGTCACTC-AACTATT
7889314 TAATTTCGTC
Statistics
Matches: 66, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
57 1 0.02
58 18 0.27
59 34 0.52
60 13 0.20
ACGTcount: A:0.37, C:0.17, G:0.08, T:0.38
Consensus pattern (58 bp):
TAGTCACTCAACTATTAGTATTTCTTTTTTGATATCCCAACTATAAAAAGTTACAAAA
Found at i:7889326 original size:59 final size:58
Alignment explanation
Indices: 7889183--7889330 Score: 146
Period size: 59 Copynumber: 2.5 Consensus size: 58
7889173 CATACTAGTA
* *
7889183 GTCACTCAACTATTAGT--ATTTTTTTTTTGAT-ATCCCAACTATAAAAAGTTATAAAAAG
1 GTCACTCAACTATTA-TAAATTTCTTTTTTG-TCA-CCCAACTATAAAAAGTTACAAAAAG
*
7889241 GTCACTCAACTATTAGTAAATTTCTTTTTTGTCACCCAACTATGAAAAGTTACAAAATA-
1 GTCACTCAACTATTA-TAAATTTCTTTTTTGTCACCCAACTATAAAAAGTTACAAAA-AG
*
7889300 GTCAC-CTAACTATT-TAATTTCGTCTTTTTTG
1 GTCACTC-AACTATTATAAATT--TCTTTTTTG
7889331 GTAACCAGCT
Statistics
Matches: 79, Mismatches: 4, Indels: 13
0.82 0.04 0.14
Matches are distributed among these distances:
57 5 0.06
58 18 0.23
59 43 0.54
60 13 0.16
ACGTcount: A:0.34, C:0.17, G:0.09, T:0.41
Consensus pattern (58 bp):
GTCACTCAACTATTATAAATTTCTTTTTTGTCACCCAACTATAAAAAGTTACAAAAAG
Found at i:7890003 original size:7 final size:7
Alignment explanation
Indices: 7889991--7890017 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
7889981 TCTGTGCTTA
7889991 AATTTTC
1 AATTTTC
7889998 AATTTTC
1 AATTTTC
7890005 AATTTTC
1 AATTTTC
7890012 AATTTT
1 AATTTT
7890018 TAAGATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.11, G:0.00, T:0.59
Consensus pattern (7 bp):
AATTTTC
Found at i:7890880 original size:16 final size:17
Alignment explanation
Indices: 7890848--7890880 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
7890838 TCCTTTCAAA
*
7890848 ATATTTAATTTTGTAAT
1 ATATTTAATTTTATAAT
7890865 ATATTT-ATTTTATAAT
1 ATATTTAATTTTATAAT
7890881 TTGATATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (17 bp):
ATATTTAATTTTATAAT
Found at i:7891019 original size:24 final size:23
Alignment explanation
Indices: 7890976--7891023 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 23
7890966 ATCATTATCT
7890976 TTTAATATTATTTTCCTATTAAAA
1 TTTAATATTATTTT-CTATTAAAA
7891000 TTTAATATTTTATTTT-TATTAAAA
1 TTTAATA--TTATTTTCTATTAAAA
7891024 AATATTATGG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 15 0.68
26 7 0.32
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (23 bp):
TTTAATATTATTTTCTATTAAAA
Found at i:7891075 original size:26 final size:26
Alignment explanation
Indices: 7891042--7891150 Score: 128
Period size: 26 Copynumber: 4.0 Consensus size: 26
7891032 GGAAATTCAT
7891042 GATAATAATAATTTTAAAATTTAAGG
1 GATAATAATAATTTTAAAATTTAAGG
7891068 GATAATAATAACTATTTTAAAATTTAAGAG
1 GATAATAAT-A--ATTTTAAAATTTAAG-G
* * *
7891098 ATGATAATAATTATTTTAAACTTTAAGA
1 --GATAATAATAATTTTAAAATTTAAGG
*
7891126 GATAATAATAATTTTAAATTTTAAG
1 GATAATAATAATTTTAAAATTTAAG
7891151 AGAGAATTAC
Statistics
Matches: 72, Mismatches: 5, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
26 32 0.44
27 1 0.01
29 29 0.40
30 1 0.01
32 9 0.12
ACGTcount: A:0.49, C:0.02, G:0.09, T:0.40
Consensus pattern (26 bp):
GATAATAATAATTTTAAAATTTAAGG
Found at i:7891084 original size:29 final size:28
Alignment explanation
Indices: 7891043--7891153 Score: 145
Period size: 29 Copynumber: 3.9 Consensus size: 28
7891033 GAAATTCATG
*
7891043 ATAATAATAATTTTAAAATTTAAGGGATA
1 ATAATAAT-ATTTTAAAATTTAAGAGATA
*
7891072 ATAATAACTATTTTAAAATTTAAGAGATG
1 ATAATAA-TATTTTAAAATTTAAGAGATA
*
7891101 ATAATAATTATTTTAAACTTTAAGAGATA
1 ATAATAA-TATTTTAAAATTTAAGAGATA
*
7891130 ATAAT-A-ATTTTAAATTTTAAGAGA
1 ATAATAATATTTTAAAATTTAAGAGA
7891154 GAATTACTAT
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 17 0.23
28 1 0.01
29 56 0.75
30 1 0.01
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.40
Consensus pattern (28 bp):
ATAATAATATTTTAAAATTTAAGAGATA
Found at i:7891108 original size:58 final size:55
Alignment explanation
Indices: 7891040--7891153 Score: 165
Period size: 58 Copynumber: 2.0 Consensus size: 55
7891030 ATGGAAATTC
*
7891040 ATGATAATAATAATTTTAAAATTTAAGGGATAATAATAACTATTTTAAAATTTAAGAG
1 ATGATAATAATAATTTTAAAATTTAAGAGATAATAAT-A--ATTTTAAAATTTAAGAG
* * *
7891098 ATGATAATAATTATTTTAAACTTTAAGAGATAATAATAATTTTAAATTTTAAGAG
1 ATGATAATAATAATTTTAAAATTTAAGAGATAATAATAATTTTAAAATTTAAGAG
7891153 A
1 A
7891154 GAATTACTAT
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
55 17 0.33
57 1 0.02
58 34 0.65
ACGTcount: A:0.49, C:0.02, G:0.10, T:0.39
Consensus pattern (55 bp):
ATGATAATAATAATTTTAAAATTTAAGAGATAATAATAATTTTAAAATTTAAGAG
Found at i:7892916 original size:30 final size:29
Alignment explanation
Indices: 7892882--7892940 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
7892872 GAATTTGATC
*
7892882 AAATCAAAATTTCT-TGTTTAAAATTGCACA
1 AAATC-AAATTT-TATGTATAAAATTGCACA
*
7892912 AAATCAAATTTTATGTATACAATTGCACA
1 AAATCAAATTTTATGTATAAAATTGCACA
7892941 TTAAACCATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 1 0.04
29 20 0.77
30 5 0.19
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.36
Consensus pattern (29 bp):
AAATCAAATTTTATGTATAAAATTGCACA
Found at i:7895179 original size:11 final size:12
Alignment explanation
Indices: 7895131--7895185 Score: 58
Period size: 12 Copynumber: 4.6 Consensus size: 12
7895121 AAGTATTTAA
*
7895131 ATTAAAAAATAC
1 ATTAAATAATAC
* *
7895143 ATTAATTATATAT
1 ATTAAATA-ATAC
*
7895156 GTTAAATAATAC
1 ATTAAATAATAC
7895168 ATTAAA-AATAC
1 ATTAAATAATAC
7895179 ATTAAAT
1 ATTAAAT
7895186 TAAATACAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
11 11 0.32
12 14 0.41
13 9 0.26
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.36
Consensus pattern (12 bp):
ATTAAATAATAC
Found at i:7895190 original size:14 final size:13
Alignment explanation
Indices: 7895131--7895198 Score: 54
Period size: 12 Copynumber: 5.5 Consensus size: 13
7895121 AAGTATTTAA
7895131 ATTAAA-AAATAC
1 ATTAAATAAATAC
* * *
7895143 ATTAATTATATAT
1 ATTAAATAAATAC
*
7895156 GTTAAAT-AATAC
1 ATTAAATAAATAC
7895168 ATT-AA-AAATAC
1 ATTAAATAAATAC
7895179 ATTAAATTAAATAC
1 ATTAAA-TAAATAC
*
7895193 AATAAA
1 ATTAAA
7895199 ATATATTTTG
Statistics
Matches: 42, Mismatches: 9, Indels: 8
0.71 0.15 0.14
Matches are distributed among these distances:
11 10 0.24
12 12 0.29
13 9 0.21
14 11 0.26
ACGTcount: A:0.59, C:0.06, G:0.01, T:0.34
Consensus pattern (13 bp):
ATTAAATAAATAC
Done.