Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 27 of 207
Found at i:7895296 original size:6 final size:6
Alignment explanation
Indices: 7895285--7895313 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
7895275 TTAGTGATTT
7895285 AATATA AATATA AATATA AATATA AATAT
1 AATATA AATATA AATATA AATATA AATAT
7895314 TATTTAACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (6 bp):
AATATA
Found at i:7903013 original size:30 final size:32
Alignment explanation
Indices: 7902976--7903063 Score: 121
Period size: 30 Copynumber: 2.9 Consensus size: 32
7902966 CACGAGAATA
*
7902976 AGTTGCTCACACAAGCTGTCAATATATCAT-G
1 AGTTGCTCACACAAGCTGACAATATATCATAG
* *
7903007 -GTTGCTCACACAAGCTGGCACTATA--ATAG
1 AGTTGCTCACACAAGCTGACAATATATCATAG
7903036 AGTTGCTCACACAAGCTGACAATATATC
1 AGTTGCTCACACAAGCTGACAATATATC
7903064 GAGCTTACTC
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
28 2 0.04
29 1 0.02
30 46 0.94
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (32 bp):
AGTTGCTCACACAAGCTGACAATATATCATAG
Found at i:7906978 original size:38 final size:38
Alignment explanation
Indices: 7906911--7906984 Score: 98
Period size: 38 Copynumber: 1.9 Consensus size: 38
7906901 CTAAAGGTCG
*
7906911 AGCATTAGCGGCACTTTTTGGAAAACGCCGCTAAAAATA
1 AGCATTAGCAGCACTTTTTGGAAAACGCCGC-AAAAATA
*
7906950 AGCATTAGCAGC-GTTTTT-GAAAAGCGCCGCAAAAA
1 AGCATTAGCAGCACTTTTTGGAAAA-CGCCGCAAAAA
7906985 GCCTAAGCCC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
37 10 0.31
38 11 0.34
39 11 0.34
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (38 bp):
AGCATTAGCAGCACTTTTTGGAAAACGCCGCAAAAATA
Found at i:7907074 original size:41 final size:41
Alignment explanation
Indices: 7907017--7907252 Score: 291
Period size: 41 Copynumber: 5.8 Consensus size: 41
7907007 TTCTGAGGCA
* *
7907017 TTTAGCTGCGTTTTTAAAGAAGCGCCGCTAATGCTCTAGCC
1 TTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGCTCGAGCC
* * *
7907058 TTTAGCGACGTTTTTAAAGTAGCGCCGCTAATGATCTG-GCC
1 TTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGCTC-GAGCC
* * *
7907099 TTTAGCAGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGGCC
1 TTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGCTCGAGCC
* *
7907140 TTTAGCGGCGTTTTGAAA-ATGCGCCGCTAATGCTCGAGCC
1 TTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGCTCGAGCC
* *
7907180 TTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATACTC-AGGCC
1 TTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGCTCGA-GCC
* *
7907221 TTTAGCGGTGTTTTTGAAA-AAGCGCCACTAAT
1 TTTAGCGGCGTTTTT-AAAGAAGCGCCGCTAAT
7907253 AATAATAAAA
Statistics
Matches: 168, Mismatches: 22, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
40 38 0.23
41 128 0.76
42 2 0.01
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.30
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGCTCGAGCC
Found at i:7907929 original size:28 final size:28
Alignment explanation
Indices: 7907889--7907945 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
7907879 GGGTTATAGG
*
7907889 AAAATATTATAAATATTAAAATTCGAAT
1 AAAATATTATAAATATTAAAATTCCAAT
*
7907917 AAAAT-TTATTAAATATTGAAATTCCAAT
1 AAAATATTA-TAAATATTAAAATTCCAAT
7907945 A
1 A
7907946 CTAGCTAGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 3 0.12
28 23 0.88
ACGTcount: A:0.54, C:0.05, G:0.04, T:0.37
Consensus pattern (28 bp):
AAAATATTATAAATATTAAAATTCCAAT
Found at i:7910745 original size:86 final size:87
Alignment explanation
Indices: 7910631--7910805 Score: 217
Period size: 86 Copynumber: 2.0 Consensus size: 87
7910621 TCCTCTTATT
* * * * *
7910631 TTATAAAAATTGAAAATTTAGTCTGGTTTTTGGTGAATATATGA-ACTTGTATTGTTAATTTGTG
1 TTATAAAAATTGAAAAGTTAGTCCGGTTTTTGGTGAATACATGATACATGAATTGTTAATTTGTG
* *
7910695 TTAATTTGTTGCATTTAAAATG
66 CTAATTTGTTGCATGTAAAATG
* * * * *
7910717 TTATAAAAATTGACAAGTTGGTCCGGTTTTTGGTTAATACATTATACATGAATTGTTAATTTTTG
1 TTATAAAAATTGAAAAGTTAGTCCGGTTTTTGGTGAATACATGATACATGAATTGTTAATTTGTG
* *
7910782 CTAATTTTTTGCATGTAAATTG
66 CTAATTTGTTGCATGTAAAATG
7910804 TT
1 TT
7910806 GAAATGATGA
Statistics
Matches: 74, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
86 37 0.50
87 37 0.50
ACGTcount: A:0.30, C:0.06, G:0.17, T:0.47
Consensus pattern (87 bp):
TTATAAAAATTGAAAAGTTAGTCCGGTTTTTGGTGAATACATGATACATGAATTGTTAATTTGTG
CTAATTTGTTGCATGTAAAATG
Found at i:7911010 original size:86 final size:86
Alignment explanation
Indices: 7910897--7911147 Score: 290
Period size: 86 Copynumber: 2.9 Consensus size: 86
7910887 TAAAAATTGA
* * *
7910897 AAATTGAAAATTTAGTCTGCTTGTTGGTAAATACATGAACTTGAACCATTTATTTTTGCTAATTT
1 AAATTGAAAAATTAGTCTGATTGTTGGTAAATACATGAACTTGAACCATTGATTTTTGCTAATTT
* *
7910962 GTTGCATATAAGTTGTTATA-
66 GTTGCATATAAATCGTTATAG
* *
7910982 AATATTGAAAAATTAGTCTGATTTTTGGTAAATACATGAACTTGAACCATTGATTTTTGTTAATT
1 AA-ATTGAAAAATTAGTCTGATTGTTGGTAAATACATGAACTTGAACCATTGATTTTTGCTAATT
7911047 TGTTGCATATAAATCGTTATAG
65 TGTTGCATATAAATCGTTATAG
* * * * ** * **
7911069 AAATTGAATATTTAGCCCT-AATGCCGGTAAATATATGAACTATGAATAATTGATTTTTTGCTAA
1 AAATTGAAAAATTAG-TCTGATTGTTGGTAAATACATGAACT-TGAACCATTGA-TTTTTGCTAA
* *
7911133 TTTGTTTCACATAAA
63 TTTGTTGCATATAAA
7911148 CTGTTGTAAG
Statistics
Matches: 141, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
85 2 0.01
86 104 0.74
87 13 0.09
88 22 0.16
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (86 bp):
AAATTGAAAAATTAGTCTGATTGTTGGTAAATACATGAACTTGAACCATTGATTTTTGCTAATTT
GTTGCATATAAATCGTTATAG
Found at i:7911203 original size:40 final size:40
Alignment explanation
Indices: 7911159--7911243 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
7911149 TGTTGTAAGA
* * *
7911159 TTGATTTGTGTTAATTTCTTGCATA-TAAATTATTGAAATG
1 TTGATTTGTGATAATTCCTTACATATTAAA-TATTGAAATG
* *
7911199 TTGATTTTTGATAATTCCTTACATATTAAATATTGAAGTG
1 TTGATTTGTGATAATTCCTTACATATTAAATATTGAAATG
7911239 TTGAT
1 TTGAT
7911244 GTCCAAGCTA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 35 0.90
41 4 0.10
ACGTcount: A:0.31, C:0.06, G:0.14, T:0.49
Consensus pattern (40 bp):
TTGATTTGTGATAATTCCTTACATATTAAATATTGAAATG
Found at i:7913398 original size:43 final size:43
Alignment explanation
Indices: 7913310--7913472 Score: 159
Period size: 43 Copynumber: 3.8 Consensus size: 43
7913300 GAATTATACT
* ** * ** *
7913310 TTTAGTGGCGTTTGTGATAAAAGCGTCGCTAAATAT-TATGTTC
1 TTTAGCGGCGTTTGTGGCAAAAGCGCCGCTAAAGGTCT-TGGTC
* * *
7913353 TTTAGCGGCGTTTGTGGCTAAAGTGTCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGCAAAAGCGCCGCTAAAGGTCTTGGTC
* * *
7913396 TTTAGCGACGTTTGTGGGAAAAGCGCCGCTAATGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGCAAAAGCGCCGCTAAAGGTCTTGGTC
* *
7913439 TTTAGCGGCGTTTGTGAG-AAAAGCACTGCTAAAG
1 TTTAGCGGCGTTTGTG-GCAAAAGCGCCGCTAAAG
7913473 TTAGCGACGC
Statistics
Matches: 100, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
43 98 0.98
44 2 0.02
ACGTcount: A:0.22, C:0.15, G:0.29, T:0.33
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGCAAAAGCGCCGCTAAAGGTCTTGGTC
Found at i:7914427 original size:6 final size:6
Alignment explanation
Indices: 7914416--7914445 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
7914406 TTGTGGAGCA
7914416 GCTCAG GCTCAG GCTCAG GCTCAG GCTCAG
1 GCTCAG GCTCAG GCTCAG GCTCAG GCTCAG
7914446 CCAGCTCCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.17
Consensus pattern (6 bp):
GCTCAG
Found at i:7916504 original size:19 final size:18
Alignment explanation
Indices: 7916471--7916506 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
7916461 TGTCTTTCGT
*
7916471 ATTTGGGTTAGTTAGTTA
1 ATTTGGGTGAGTTAGTTA
7916489 ATTTGAGGTGAGTTAGTT
1 ATTTG-GGTGAGTTAGTT
7916507 GTATACTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.47
Consensus pattern (18 bp):
ATTTGGGTGAGTTAGTTA
Found at i:7920055 original size:47 final size:47
Alignment explanation
Indices: 7919986--7920080 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
7919976 TGGGTTGTTT
7919986 ATATATAGGGAGTGTAGGAGAGTCATAAATTTGTGGTAAACTATTAA
1 ATATATAGGGAGTGTAGGAGAGTCATAAATTTGTGGTAAACTATTAA
7920033 ATATATAGGGAGTGTAGGAGAGTCATAAATTTGTGGTAAACTATTAA
1 ATATATAGGGAGTGTAGGAGAGTCATAAATTTGTGGTAAACTATTAA
7920080 A
1 A
7920081 ACAAGCTTTG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.39, C:0.04, G:0.25, T:0.32
Consensus pattern (47 bp):
ATATATAGGGAGTGTAGGAGAGTCATAAATTTGTGGTAAACTATTAA
Found at i:7920983 original size:114 final size:108
Alignment explanation
Indices: 7920617--7921187 Score: 577
Period size: 114 Copynumber: 5.2 Consensus size: 108
7920607 CGGGTATTGG
* ** *
7920617 TCTGTAAATGGCTAGCACCAGA-ATACGAAAAAAGTAAAAAAAAAAATTTTTGGTGGTGGCCTGC
1 TCTGTCAATGGCCGGCACCA-ATATACGAAAAAAGT--AAAAAAAAATTTTTAGTGGTGGCCTGC
* * * * *
7920681 CAATGG-CTGGTACCACCTTTTTCAAAATATTTTCTTTTACTTTT-T
63 CAATGGTC-GGCACCACCTTTTTCCAAATTTTTTTTTTTACTTTTGA
** * * *
7920726 TCGTGTCAATGGTAGGCACCAATATACGAAAAAAATAAAAAAAAATATTTTTTTTGTGGTGGTCT
1 TC-TGTCAATGGCCGGCACCAATATACGAAAAAAGT-AAAAAAAA-A--TTTTTAGTGGTGGCCT
* *** *
7920791 GCCAATGGCCGGCACCACCTTTATGGGATATAGTTTTTTTTTTTTACTTTTGG
61 GCCAATGGTCGGCACCACCTTT-TTCCA-A-A--TTTTTTTTTTTACTTTTGA
* * * *
7920844 TCTGTCAATTGCCGACACCAGTATACGAAAAAAGTAAAAAAGAAATTTTTTTTTGGTGGTGGCCT
1 TCTGTCAATGGCCGGCACCAATATACGAAAAAAGTAAAAAA-AAA----TTTTTAGTGGTGGCCT
*
7920909 GCCAATGGTCAGCACCACCTTTTTCCCAAATTTTTTTTTTTACTTTTGA
61 GCCAATGGTCGGCACCACCTTTTT-CCAAATTTTTTTTTTTACTTTTGA
* *
7920958 TCTGTCAATGGCCGGCACCAATATACGAAAAAAGGAAAAAAAAA-ATTTAGTGGTGGCCTGCCAA
1 TCTGTCAATGGCCGGCACCAATATACGAAAAAAGTAAAAAAAAATTTTTAGTGGTGGCCTGCCAA
* * ** * *
7921022 TGGTCGACACCACATTTTT--TTA-TTTTTTATTTACATTTGA
66 TGGTCGGCACCACCTTTTTCCAAATTTTTTTTTTTACTTTTGA
*
7921062 TCTGTCAATGGCCGGTACCAATATACGAAAAAAGT-AAAAAAAA--TTTAGTGGTGGCCTGCCAA
1 TCTGTCAATGGCCGGCACCAATATACGAAAAAAGTAAAAAAAAATTTTTAGTGGTGGCCTGCCAA
* *
7921124 TGGTCGGCACCACCTTTTTCCAAAATTTTTTTTTTACTTTTGG
66 TGGTCGGCACCACCTTTTTCCAAATTTTTTTTTTTACTTTTGA
7921167 TCTGTCAATGGCCGGCACCAA
1 TCTGTCAATGGCCGGCACCAA
7921188 CTTTACAATA
Statistics
Matches: 392, Mismatches: 51, Indels: 42
0.81 0.11 0.09
Matches are distributed among these distances:
102 36 0.09
103 8 0.02
104 50 0.13
105 36 0.09
108 34 0.09
109 12 0.03
110 27 0.07
112 33 0.08
113 6 0.02
114 56 0.14
115 1 0.00
116 8 0.02
117 46 0.12
118 39 0.10
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (108 bp):
TCTGTCAATGGCCGGCACCAATATACGAAAAAAGTAAAAAAAAATTTTTAGTGGTGGCCTGCCAA
TGGTCGGCACCACCTTTTTCCAAATTTTTTTTTTTACTTTTGA
Found at i:7921837 original size:24 final size:24
Alignment explanation
Indices: 7921805--7921853 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
7921795 GAAACTAGTG
*
7921805 TTAAAAATAATTGTATTGTTTATA
1 TTAAAAATAATTATATTGTTTATA
* * *
7921829 TTAAGAATATTTATATTTTTTATA
1 TTAAAAATAATTATATTGTTTATA
7921853 T
1 T
7921854 CTGTAAATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (24 bp):
TTAAAAATAATTATATTGTTTATA
Found at i:7927066 original size:12 final size:12
Alignment explanation
Indices: 7927049--7927078 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7927039 TATCGTTAAA
7927049 AATTAATATTTT
1 AATTAATATTTT
7927061 AATTAATATTTT
1 AATTAATATTTT
*
7927073 TATTAA
1 AATTAA
7927079 AAAAAAAGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
AATTAATATTTT
Found at i:7936759 original size:18 final size:18
Alignment explanation
Indices: 7936736--7936775 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7936726 TAGTTCAATT
* * *
7936736 AAATAAAATATTTTGAAA
1 AAATAAAAAATATTAAAA
7936754 AAATAAAAAATATTAAAA
1 AAATAAAAAATATTAAAA
7936772 AAAT
1 AAAT
7936776 CGATTTAATC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.28
Consensus pattern (18 bp):
AAATAAAAAATATTAAAA
Found at i:7937082 original size:9 final size:9
Alignment explanation
Indices: 7937061--7937329 Score: 77
Period size: 10 Copynumber: 28.6 Consensus size: 9
7937051 TTATTAGGTT
7937061 TTTTTATAA
1 TTTTTATAA
7937070 -TTTTATAA
1 TTTTTATAA
*
7937078 TTTTTATGA
1 TTTTTATAA
*
7937087 TATGTTATAA
1 T-TTTTATAA
*
7937097 TTTTTATGAC
1 TTTTTAT-AA
*
7937107 TTTTTATATGT
1 TTTTTATA--A
*
7937118 TTTTTAAGAA
1 TTTTT-ATAA
7937128 TTTTTATACA
1 TTTTTATA-A
7937138 TTTTTATAAA
1 TTTTTAT-AA
* *
7937148 ATTTTAAATA
1 TTTTTATA-A
7937158 TGTTTTATTAA
1 T-TTTTA-TAA
7937169 -TTTTATAAA
1 TTTTTAT-AA
***
7937178 AAATTATAA
1 TTTTTATAA
**
7937187 TTTATTAGGA
1 TTT-TTATAA
*
7937197 -TTTAATTAA
1 TTTTTA-TAA
*
7937206 TTTTATATAT
1 TTTT-TATAA
*
7937216 TTTTTAT-T
1 TTTTTATAA
7937224 TTTTTATAA
1 TTTTTATAA
*
7937233 GTTTATATAAA
1 -TTTTTAT-AA
* *
7937244 CTTTAATAA
1 TTTTTATAA
7937253 TTTTT-TAA
1 TTTTTATAA
7937261 TATTTT-T-A
1 T-TTTTATAA
*
7937269 TTTTTATTA
1 TTTTTATAA
* * *
7937278 TATTTGTGAG
1 TTTTTAT-AA
* *
7937288 GTTTTATAT
1 TTTTTATAA
*
7937297 TTTTTATGA
1 TTTTTATAA
7937306 TATTTT-TAA
1 T-TTTTATAA
7937315 TTTTTATGAA
1 TTTTTAT-AA
7937325 TTTTT
1 TTTTT
7937330 TATGACAACA
Statistics
Matches: 189, Mismatches: 44, Indels: 53
0.66 0.15 0.19
Matches are distributed among these distances:
7 4 0.02
8 30 0.16
9 60 0.32
10 77 0.41
11 15 0.08
12 3 0.02
ACGTcount: A:0.32, C:0.01, G:0.06, T:0.61
Consensus pattern (9 bp):
TTTTTATAA
Found at i:7937113 original size:19 final size:19
Alignment explanation
Indices: 7937061--7937144 Score: 66
Period size: 19 Copynumber: 4.4 Consensus size: 19
7937051 TTATTAGGTT
*
7937061 TTTTTAT-AATTTTATA-A
1 TTTTTATGATTTTTATACA
*
7937078 TTTTTATGATATGTTATA-A
1 TTTTTATGAT-TTTTATACA
**
7937097 TTTTTATGACTTTTTATATGT
1 TTTTTATGA-TTTTTATA-CA
*
7937118 TTTTTAAGAATTTTTATACA
1 TTTTTATG-ATTTTTATACA
7937138 TTTTTAT
1 TTTTTAT
7937145 AAAATTTTAA
Statistics
Matches: 53, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
17 7 0.13
18 1 0.02
19 22 0.42
20 7 0.13
21 15 0.28
22 1 0.02
ACGTcount: A:0.29, C:0.02, G:0.06, T:0.63
Consensus pattern (19 bp):
TTTTTATGATTTTTATACA
Found at i:7937141 original size:21 final size:21
Alignment explanation
Indices: 7937097--7937152 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
7937087 TATGTTATAA
* * **
7937097 TTTTTATGACTTTTTATATGT
1 TTTTTAAGAATTTTTATACAT
7937118 TTTTTAAGAATTTTTATACAT
1 TTTTTAAGAATTTTTATACAT
7937139 TTTTATAA-AATTTT
1 TTTT-TAAGAATTTT
7937153 AAATATGTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 27 0.90
22 3 0.10
ACGTcount: A:0.29, C:0.04, G:0.05, T:0.62
Consensus pattern (21 bp):
TTTTTAAGAATTTTTATACAT
Found at i:7939187 original size:169 final size:169
Alignment explanation
Indices: 7938889--7939339 Score: 778
Period size: 169 Copynumber: 2.7 Consensus size: 169
7938879 CTAGGTTAGA
* * *
7938889 TCACACGGCTAGCCACATGGGTATGTGGGCTGCCTGTGTAGACTACACGACCCCATACACGTCCA
1 TCACACGGCCAGCCACATGGGCATGTGGGCTGCCTGTGTGGACTACACGACCCCATACACGTCCA
* * *
7938954 TGACACCCCTAAAACCCTAGCATGTTCGACTTTTACACTGCCTAAGACCTCCAACATGGCCTTCC
66 TGACACCCCTAAAACCCTAGCATGTTCGACTTTTACACGGCCTAGGACCTCCAACATAGCCTTCC
7939019 ACACAACTGTGTCTTTCCTGTAGGTTAAATTTTCGAATG
131 ACACAACTGTGTCTTTCCTGTAGGTTAAATTTTCGAATG
* *
7939058 TCACACGGCCAGCCACATGGGCATGTGGGCTGCTTGTGTGGACTACACAACCCCATACACGTCCA
1 TCACACGGCCAGCCACATGGGCATGTGGGCTGCCTGTGTGGACTACACGACCCCATACACGTCCA
*
7939123 TGACACCCCTAAAACCCTAGCATGTTCGACTTTTACACGGCCTAGGACCTTCAACATAGCCTTCC
66 TGACACCCCTAAAACCCTAGCATGTTCGACTTTTACACGGCCTAGGACCTCCAACATAGCCTTCC
*
7939188 ACACGACTGTGTCTTTCCTGTAGGTTAAATTTTCGAATG
131 ACACAACTGTGTCTTTCCTGTAGGTTAAATTTTCGAATG
* *
7939227 TCACACGGCCAGCCACATAGGCATGTGGGCCGCCTGTGTGGACTACACGA-CCCATACACGTCCA
1 TCACACGGCCAGCCACATGGGCATGTGGGCTGCCTGTGTGGACTACACGACCCCATACACGTCCA
*
7939291 TGACACCCCTAAAACCCTAGCATGTTCGACTTTCACACGGCCTAGGACC
66 TGACACCCCTAAAACCCTAGCATGTTCGACTTTTACACGGCCTAGGACC
7939340 CTCACACGGC
Statistics
Matches: 267, Mismatches: 15, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
168 62 0.23
169 205 0.77
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.24
Consensus pattern (169 bp):
TCACACGGCCAGCCACATGGGCATGTGGGCTGCCTGTGTGGACTACACGACCCCATACACGTCCA
TGACACCCCTAAAACCCTAGCATGTTCGACTTTTACACGGCCTAGGACCTCCAACATAGCCTTCC
ACACAACTGTGTCTTTCCTGTAGGTTAAATTTTCGAATG
Found at i:7940798 original size:91 final size:93
Alignment explanation
Indices: 7940616--7940838 Score: 291
Period size: 92 Copynumber: 2.5 Consensus size: 93
7940606 TAAGGGTGCT
* * * * * *
7940616 ACCCTCAAACATTTTCAAAAAAAAAGCAATTAAGACCCGA-CTTTTTTTTGTACTCATTTGGGTA
1 ACCCTCAAACCTTTTCAAAAAAAAAGCAATTAAGCCCCTACCTTTGTTTTGAACTCAATTGGGTA
* *
7940680 TTTGAACTTTTAAAATGCATCAAAAAAG
66 CTTGAACTTTCAAAATGCATCAAAAAAG
* *
7940708 -CCCTCAAACCTTTTCAAAAAAAAAGCAATGAAGCCCCTACCTTTGTTTTGAACTCAATTGTGTA
1 ACCCTCAAACCTTTTCAAAAAAAAAGCAATTAAGCCCCTACCTTTGTTTTGAACTCAATTGGGTA
7940772 CTTGAACTTTCAAAATGCATC-AAAAAG
66 CTTGAACTTTCAAAATGCATCAAAAAAG
*
7940799 ACCCTCAAA-C--TT-AAAAAAAAAACAATTAAGCCCCT-CCTTT
1 ACCCTCAAACCTTTTCAAAAAAAAAGCAATTAAGCCCCTACCTTT
7940839 TTAAAAAAAA
Statistics
Matches: 117, Mismatches: 12, Indels: 9
0.85 0.09 0.07
Matches are distributed among these distances:
87 5 0.04
88 21 0.18
89 2 0.02
91 42 0.36
92 47 0.40
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.29
Consensus pattern (93 bp):
ACCCTCAAACCTTTTCAAAAAAAAAGCAATTAAGCCCCTACCTTTGTTTTGAACTCAATTGGGTA
CTTGAACTTTCAAAATGCATCAAAAAAG
Found at i:7947322 original size:15 final size:14
Alignment explanation
Indices: 7947302--7947337 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
7947292 AATTGATAAA
7947302 TTAAAAAATTAAGTG
1 TTAAAAAA-TAAGTG
7947317 TTAAAAAATAAGTG
1 TTAAAAAATAAGTG
*
7947331 TTGAAAA
1 TTAAAAA
7947338 TTGAAGTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.56, C:0.00, G:0.14, T:0.31
Consensus pattern (14 bp):
TTAAAAAATAAGTG
Found at i:7947328 original size:14 final size:15
Alignment explanation
Indices: 7947302--7947337 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
7947292 AATTGATAAA
7947302 TTAAAAAATTAAGTG
1 TTAAAAAATTAAGTG
7947317 TTAAAAAA-TAAGTG
1 TTAAAAAATTAAGTG
7947331 TTGAAAA
1 TT-AAAA
7947338 TTGAAGTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 8 0.40
15 12 0.60
ACGTcount: A:0.56, C:0.00, G:0.14, T:0.31
Consensus pattern (15 bp):
TTAAAAAATTAAGTG
Found at i:7947344 original size:15 final size:14
Alignment explanation
Indices: 7947306--7947350 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
7947296 GATAAATTAA
*
7947306 AAAATTAAGTGTTA
1 AAAATTAAGTGTTG
*
7947320 AAAAATAAGTGTTG
1 AAAATTAAGTGTTG
*
7947334 AAAATTGAAGTATTG
1 AAAATT-AAGTGTTG
7947349 AA
1 AA
7947351 TTCAAGTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
14 17 0.65
15 9 0.35
ACGTcount: A:0.51, C:0.00, G:0.18, T:0.31
Consensus pattern (14 bp):
AAAATTAAGTGTTG
Found at i:7949047 original size:22 final size:22
Alignment explanation
Indices: 7948996--7949047 Score: 52
Period size: 22 Copynumber: 2.3 Consensus size: 22
7948986 TTTTATAGTT
*
7948996 ATAATTAAATATTTTTTATAACA
1 ATAA-TAAATATTATTTATAACA
* *
7949019 ATGATAAATATTATTT-TCACAA
1 ATAATAAATATTATTTATAAC-A
7949041 ATAATAA
1 ATAATAA
7949048 CATTATACTT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
21 3 0.12
22 18 0.75
23 3 0.12
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (22 bp):
ATAATAAATATTATTTATAACA
Found at i:7952397 original size:64 final size:64
Alignment explanation
Indices: 7952296--7952442 Score: 285
Period size: 64 Copynumber: 2.3 Consensus size: 64
7952286 ATGTTATATT
7952296 AGTTCGAATCCTCTAATTTTGATTGAATTAATAAGGTTAGAAATTTGAGAATTTTAAAATCTTA
1 AGTTCGAATCCTCTAATTTTGATTGAATTAATAAGGTTAGAAATTTGAGAATTTTAAAATCTTA
*
7952360 AGTTCGAATCCTTTAATTTTGATTGAATTAATAAGGTTAGAAATTTGAGAATTTTAAAATCTTA
1 AGTTCGAATCCTCTAATTTTGATTGAATTAATAAGGTTAGAAATTTGAGAATTTTAAAATCTTA
7952424 AGTTCGAATCCTCTAATTT
1 AGTTCGAATCCTCTAATTT
7952443 AAATACTATA
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 81 1.00
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (64 bp):
AGTTCGAATCCTCTAATTTTGATTGAATTAATAAGGTTAGAAATTTGAGAATTTTAAAATCTTA
Found at i:7956128 original size:21 final size:21
Alignment explanation
Indices: 7956102--7956145 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
7956092 AAATAGAGCT
7956102 TCTTTGAGTCTACTGTGAGTG
1 TCTTTGAGTCTACTGTGAGTG
*
7956123 TCTTTGAGTCTGCTGTGAGTG
1 TCTTTGAGTCTACTGTGAGTG
7956144 TC
1 TC
7956146 AATTGAAGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.11, C:0.16, G:0.30, T:0.43
Consensus pattern (21 bp):
TCTTTGAGTCTACTGTGAGTG
Found at i:7958795 original size:10 final size:9
Alignment explanation
Indices: 7958780--7958804 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
7958770 CCAAATTATA
7958780 TTTTTTTCT
1 TTTTTTTCT
7958789 TTTTTTTCT
1 TTTTTTTCT
7958798 TTTTTTT
1 TTTTTTT
7958805 ATTATGCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTCT
Found at i:7959187 original size:3 final size:3
Alignment explanation
Indices: 7959179--7959205 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
7959169 CTTTAGAGAA
7959179 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
7959206 CAAGTGTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:7972255 original size:22 final size:22
Alignment explanation
Indices: 7972230--7972281 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
7972220 GTACTATACA
7972230 GAGAGCACAAATGA-GCTAATCG
1 GAGAGCACAAAT-ATGCTAATCG
7972252 GAGAGCACAAATATGCTAATCG
1 GAGAGCACAAATATGCTAATCG
*
7972274 AAGAGCAC
1 GAGAGCAC
7972282 TAACGTGCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
21 1 0.04
22 27 0.96
ACGTcount: A:0.42, C:0.19, G:0.25, T:0.13
Consensus pattern (22 bp):
GAGAGCACAAATATGCTAATCG
Found at i:7972290 original size:22 final size:22
Alignment explanation
Indices: 7972231--7972293 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 22
7972221 TACTATACAG
* *
7972231 AGAGCACAAATGA-GCTAATCGG
1 AGAGCACAAA-CATGCTAATCGA
*
7972253 AGAGCACAAATATGCTAATCGA
1 AGAGCACAAACATGCTAATCGA
* *
7972275 AGAGCACTAACGTGCTAAT
1 AGAGCACAAACATGCTAAT
7972294 AATCAGAGAG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
21 1 0.03
22 34 0.97
ACGTcount: A:0.41, C:0.19, G:0.22, T:0.17
Consensus pattern (22 bp):
AGAGCACAAACATGCTAATCGA
Found at i:7972303 original size:25 final size:25
Alignment explanation
Indices: 7972268--7972329 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
7972258 ACAAATATGC
*
7972268 TAATCGAAGAGCACTAACGTGCTAA
1 TAATCAAAGAGCACTAACGTGCTAA
* * *
7972293 TAATCAGAGAGCACTGATGTGCTAA
1 TAATCAAAGAGCACTAACGTGCTAA
7972318 TAATCAAAGAGC
1 TAATCAAAGAGC
7972330 GCGCTAAGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.40, C:0.18, G:0.21, T:0.21
Consensus pattern (25 bp):
TAATCAAAGAGCACTAACGTGCTAA
Found at i:7972928 original size:49 final size:47
Alignment explanation
Indices: 7972875--7972999 Score: 119
Period size: 47 Copynumber: 2.6 Consensus size: 47
7972865 TAGTATAACT
7972875 ATGGTCTTCCACATAATCACATATCACACACCAAAGCCATAGCCCAACC
1 ATGGTCTT--ACATAATCACATATCACACACCAAAGCCATAGCCCAACC
* * * * *
7972924 ATGGTCTTACATGGAAGCACATAT--CACACCGATGCCATAGCCCAGCT
1 ATGGTCTTACAT--AATCACATATCACACACCAAAGCCATAGCCCAACC
*
7972971 ATGGTCTTATACAGAAATCACATATCACA
1 ATGGTC-T-TACA-TAATCACATATCACA
7973000 TATTGCCATG
Statistics
Matches: 62, Mismatches: 7, Indels: 13
0.76 0.09 0.16
Matches are distributed among these distances:
47 29 0.47
48 10 0.16
49 21 0.34
50 2 0.03
ACGTcount: A:0.35, C:0.30, G:0.13, T:0.22
Consensus pattern (47 bp):
ATGGTCTTACATAATCACATATCACACACCAAAGCCATAGCCCAACC
Found at i:7975577 original size:22 final size:22
Alignment explanation
Indices: 7975552--7975596 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
7975542 TATTACTTCA
7975552 AATATGAATAGCCAAAAAAATT
1 AATATGAATAGCCAAAAAAATT
* *
7975574 AATATGGATAGCCAAAAGAATT
1 AATATGAATAGCCAAAAAAATT
7975596 A
1 A
7975597 TCTTCACCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.56, C:0.09, G:0.13, T:0.22
Consensus pattern (22 bp):
AATATGAATAGCCAAAAAAATT
Found at i:7980322 original size:18 final size:19
Alignment explanation
Indices: 7980301--7980348 Score: 53
Period size: 22 Copynumber: 2.4 Consensus size: 19
7980291 AATATGTATA
7980301 ATAATATTTT-AATTAATT
1 ATAATATTTTAAATTAATT
7980319 ATAAAATTATTTTAAATTAATT
1 AT--AA-TATTTTAAATTAATT
*
7980341 ATTATATT
1 ATAATATT
7980349 AAATTATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
18 2 0.08
19 4 0.16
20 3 0.12
21 6 0.24
22 10 0.40
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
ATAATATTTTAAATTAATT
Found at i:7980329 original size:21 final size:22
Alignment explanation
Indices: 7980297--7980342 Score: 69
Period size: 21 Copynumber: 2.1 Consensus size: 22
7980287 TATTAATATG
7980297 TATAATAATATTTT-AATTAAT
1 TATAATAATATTTTAAATTAAT
7980318 TATAA-AATTATTTTAAATTAAT
1 TATAATAA-TATTTTAAATTAAT
7980340 TAT
1 TAT
7980343 TATATTAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 2 0.09
21 11 0.48
22 10 0.43
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
TATAATAATATTTTAAATTAAT
Found at i:7982227 original size:25 final size:24
Alignment explanation
Indices: 7982195--7982243 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
7982185 GGGGAAAAAT
7982195 ATCAAATCAAAATAGTAATCACCAA
1 ATCAAATCAAAATAG-AATCACCAA
* *
7982220 ATCAAATCATAATAGAATCTCCAA
1 ATCAAATCAAAATAGAATCACCAA
7982244 CTTTTTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.53, C:0.20, G:0.04, T:0.22
Consensus pattern (24 bp):
ATCAAATCAAAATAGAATCACCAA
Found at i:7984305 original size:12 final size:12
Alignment explanation
Indices: 7984288--7984312 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7984278 TATTTATTCT
7984288 AAAATCATAAAA
1 AAAATCATAAAA
7984300 AAAATCATAAAA
1 AAAATCATAAAA
7984312 A
1 A
7984313 GTATTTTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAATCATAAAA
Found at i:8008427 original size:16 final size:16
Alignment explanation
Indices: 8008398--8008431 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8008388 TTTGAGTGTG
*
8008398 ATTGATAGGAAAGAAA
1 ATTGAAAGGAAAGAAA
*
8008414 ATTGAAAGGCAAGAAA
1 ATTGAAAGGAAAGAAA
8008430 AT
1 AT
8008432 AAGAAATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.03, G:0.24, T:0.18
Consensus pattern (16 bp):
ATTGAAAGGAAAGAAA
Found at i:8022430 original size:20 final size:20
Alignment explanation
Indices: 8022405--8022447 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
8022395 TATAATTGCT
8022405 ATGTATAATTGCTATGTATA
1 ATGTATAATTGCTATGTATA
8022425 ATGTATAATTGCTATGTATA
1 ATGTATAATTGCTATGTATA
8022445 ATG
1 ATG
8022448 CACTGATCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.35, C:0.05, G:0.16, T:0.44
Consensus pattern (20 bp):
ATGTATAATTGCTATGTATA
Found at i:8022446 original size:13 final size:13
Alignment explanation
Indices: 8022395--8022426 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
8022385 TATGCTTTGA
8022395 TATAATTGCTATG
1 TATAATTGCTATG
8022408 TATAATTGCTATG
1 TATAATTGCTATG
8022421 TATAAT
1 TATAAT
8022427 GTATAATTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.34, C:0.06, G:0.12, T:0.47
Consensus pattern (13 bp):
TATAATTGCTATG
Found at i:8022767 original size:25 final size:25
Alignment explanation
Indices: 8022739--8022808 Score: 77
Period size: 27 Copynumber: 2.7 Consensus size: 25
8022729 GATATACGAC
*
8022739 TCTTCAGAGTTTCCCGATTAAAGGA
1 TCTTCAGAGCTTCCCGATTAAAGGA
* * *
8022764 TCTTTCATGAGCTTCCCGATTGATGGC
1 TC-TTCA-GAGCTTCCCGATTAAAGGA
*
8022791 TCTCCAGAGCTTCCCGAT
1 TCTTCAGAGCTTCCCGAT
8022809 ATTGGCTCGC
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
25 14 0.37
26 7 0.18
27 17 0.45
ACGTcount: A:0.20, C:0.27, G:0.20, T:0.33
Consensus pattern (25 bp):
TCTTCAGAGCTTCCCGATTAAAGGA
Found at i:8022824 original size:24 final size:24
Alignment explanation
Indices: 8022771--8022826 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
8022761 GGATCTTTCA
*
8022771 TGAGCTTCCCGATTGATGGCTCTCC
1 TGAGCTTCCCGATT-ATGGCTCGCC
* *
8022796 AGAGCTTCCCGA-TATTGGCTCGCT
1 TGAGCTTCCCGATTA-TGGCTCGCC
8022820 TGAGCTT
1 TGAGCTT
8022827 TCTCGTTAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 1 0.04
24 14 0.54
25 11 0.42
ACGTcount: A:0.14, C:0.29, G:0.25, T:0.32
Consensus pattern (24 bp):
TGAGCTTCCCGATTATGGCTCGCC
Found at i:8022841 original size:25 final size:26
Alignment explanation
Indices: 8022811--8022890 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 26
8022801 TTCCCGATAT
* *
8022811 TGGCTCGCTTGAGCTTTCTCGTTA-A
1 TGGCTCACATGAGCTTTCTCGTTACA
*
8022836 TGGCTCTCCA-GAGCTTTC-CGTTACA
1 TGGCTC-ACATGAGCTTTCTCGTTACA
* * *
8022861 TGACTTACATGAGC-TTCTCGTTATA
1 TGGCTCACATGAGCTTTCTCGTTACA
8022886 TGGCT
1 TGGCT
8022891 ATGCTCACAT
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
24 10 0.23
25 33 0.75
26 1 0.02
ACGTcount: A:0.16, C:0.25, G:0.21, T:0.38
Consensus pattern (26 bp):
TGGCTCACATGAGCTTTCTCGTTACA
Found at i:8022879 original size:49 final size:48
Alignment explanation
Indices: 8022769--8022890 Score: 127
Period size: 49 Copynumber: 2.5 Consensus size: 48
8022759 AAGGATCTTT
* * * * *
8022769 CATGAGCTTCCCGATTGATGGCTCTCCAGAGCTTCCCGATATTGGCTCG
1 CATGAGCTTCTCG-TTAATGGCTCTCCAGAGCTTCCCGATAATGACTCA
* * * *
8022818 CTTGAGCTTTCTCGTTAATGGCTCTCCAGAGCTTTCCGTTACATGACTTA
1 CATGAGC-TTCTCGTTAATGGCTCTCCAGAGCTTCCCGATA-ATGACTCA
8022868 CATGAGCTTCTCGTTATATGGCT
1 CATGAGCTTCTCGTTA-ATGGCT
8022891 ATGCTCACAT
Statistics
Matches: 60, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
49 39 0.65
50 21 0.35
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.34
Consensus pattern (48 bp):
CATGAGCTTCTCGTTAATGGCTCTCCAGAGCTTCCCGATAATGACTCA
Found at i:8029038 original size:15 final size:15
Alignment explanation
Indices: 8029007--8029041 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
8028997 GCCAAAGATG
8029007 TTAATTGAATTGAAT
1 TTAATTGAATTGAAT
*
8029022 TTAATATGAATTGATT
1 TTAAT-TGAATTGAAT
8029038 TTAA
1 TTAA
8029042 ATTCATTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (15 bp):
TTAATTGAATTGAAT
Found at i:8031460 original size:41 final size:42
Alignment explanation
Indices: 8031368--8031465 Score: 117
Period size: 41 Copynumber: 2.3 Consensus size: 42
8031358 GAAGCTCGTA
* * *
8031368 AGAGCTGGACTAAAACCCATAAGGGTTAAACAAAAGCTTAAT
1 AGAGCTGAACGAAAACCCATAAGGGTCAAACAAAAGCTTAAT
* ** *
8031410 AAATTTGAACGAAAATCCATAA-GGTCAAACAAAAGCTTAAT
1 AGAGCTGAACGAAAACCCATAAGGGTCAAACAAAAGCTTAAT
8031451 AGAGCTGAACAGAAA
1 AGAGCTGAAC-GAAA
8031466 CTCATATGAG
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
41 25 0.56
42 20 0.44
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.18
Consensus pattern (42 bp):
AGAGCTGAACGAAAACCCATAAGGGTCAAACAAAAGCTTAAT
Found at i:8031484 original size:21 final size:21
Alignment explanation
Indices: 8031458--8031507 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
8031448 AATAGAGCTG
*
8031458 AACAGAAACTCAT-ATGAGTTA
1 AACAGAAACTCATGA-GAGATA
* *
8031479 AACAGAAGCTCGTGAGAGATA
1 AACAGAAACTCATGAGAGATA
8031500 AACAGAAA
1 AACAGAAA
8031508 GTAAACACGA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 23 0.96
22 1 0.04
ACGTcount: A:0.50, C:0.14, G:0.20, T:0.16
Consensus pattern (21 bp):
AACAGAAACTCATGAGAGATA
Found at i:8033071 original size:17 final size:17
Alignment explanation
Indices: 8033049--8033082 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
8033039 TTGCACTTAG
8033049 TTAATTAATTTAATTTA
1 TTAATTAATTTAATTTA
8033066 TTAATTAATTTAATTTA
1 TTAATTAATTTAATTTA
8033083 ACATCTATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TTAATTAATTTAATTTA
Found at i:8041167 original size:11 final size:11
Alignment explanation
Indices: 8041147--8041176 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
8041137 TTAAATTTAA
8041147 AAAAAGTATTTT
1 AAAAA-TATTTT
8041159 AAAAATATTTT
1 AAAAATATTTT
8041170 AAAAATA
1 AAAAATA
8041177 AAATAATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:8041196 original size:29 final size:28
Alignment explanation
Indices: 8041158--8041218 Score: 97
Period size: 29 Copynumber: 2.2 Consensus size: 28
8041148 AAAAGTATTT
*
8041158 TAAAAATATTTTAAAAATAAAATAATAA
1 TAAAAATATTTTAAAAATAAAAAAATAA
8041186 TAAAAAGTATTTTAAAAATAAAAAAATAA
1 TAAAAA-TATTTTAAAAATAAAAAAATAA
8041215 -AAAA
1 TAAAA
8041219 TAAATATATT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 10 0.32
29 21 0.68
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (28 bp):
TAAAAATATTTTAAAAATAAAAAAATAA
Found at i:8044137 original size:13 final size:13
Alignment explanation
Indices: 8044115--8044145 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
8044105 GATTTTACCA
*
8044115 AAAATGTTTTACT
1 AAAATATTTTACT
8044128 AAAATATTTTACT
1 AAAATATTTTACT
8044141 AAAAT
1 AAAAT
8044146 TATGATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.42
Consensus pattern (13 bp):
AAAATATTTTACT
Found at i:8045728 original size:90 final size:89
Alignment explanation
Indices: 8045555--8045809 Score: 253
Period size: 90 Copynumber: 2.8 Consensus size: 89
8045545 TAATAATCTG
* * ** * * * * *
8045555 CAACTCTAATGGTTCATCCACAAATTATTTGGTAGCTTTTATCTACAAAAAATGTTGTGCATTCA
1 CAACACTAGTGGTTCATCCACCCATT-TTTGGCAGCTCTTATCTGC-AAATATGTTGTGTATTCA
* ** *
8045620 CAACCATTTGGTAGCGTATTAACCTA
64 CAACCATCTGACAACGTATTAACCTA
8045646 CAACACTAGTGGTTCATCCACCCATTTTCTGGCAGCTCTTATCTGCAAATATGTTGTGTATTCAC
1 CAACACTAGTGGTTCATCCACCCATTTT-TGGCAGCTCTTATCTGCAAATATGTTGTGTATTCAC
* *
8045711 AACCATCTGACAACGTATTAACTTG
65 AACCATCTGACAACGTATTAACCTA
* * ** * *
8045736 CAACACTGGTGGTCCATCCACCGACA-TTTAAGCAGCTCTCATTTGCAAATATGTTGTGCT-TTC
1 CAACACTAGTGGTTCATCCACC--CATTTTTGGCAGCTCTTATCTGCAAATATGTTGTG-TATTC
8045799 ACAACCATCTG
63 ACAACCATCTG
8045810 GCAGTGTATT
Statistics
Matches: 139, Mismatches: 21, Indels: 9
0.82 0.12 0.05
Matches are distributed among these distances:
90 97 0.70
91 40 0.29
92 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (89 bp):
CAACACTAGTGGTTCATCCACCCATTTTTGGCAGCTCTTATCTGCAAATATGTTGTGTATTCACA
ACCATCTGACAACGTATTAACCTA
Found at i:8045845 original size:90 final size:90
Alignment explanation
Indices: 8045606--8045829 Score: 274
Period size: 90 Copynumber: 2.5 Consensus size: 90
8045596 TCTACAAAAA
* * * * *
8045606 ATGTTGTGCATTCACAACCATTTGGTAGCGTATTAACCTACAACACTAGTGGTTCATCCACCCAT
1 ATGTTGTGCTTTCACAACCATCTGGCAGCGTATTAACTTGCAACACTAGTGGTTCATCCACCCAT
** *
8045671 TTTCTGGCAGCTCTTATCTGCAAAT
66 TTTCAAGCAGCTCTCATCTGCAAAT
* * * *
8045696 ATGTTGTG-TATTCACAACCATCTGACAACGTATTAACTTGCAACACTGGTGGTCCATCCACCGA
1 ATGTTGTGCT-TTCACAACCATCTGGCAGCGTATTAACTTGCAACACTAGTGGTTCATCCACC--
*
8045760 CA-TTT-AAGCAGCTCTCATTTGCAAAT
63 CATTTTCAAGCAGCTCTCATCTGCAAAT
*
8045786 ATGTTGTGCTTTCACAACCATCTGGCAGTGTATTAACTTGCAAC
1 ATGTTGTGCTTTCACAACCATCTGGCAGCGTATTAACTTGCAAC
8045830 TTTTGTGGTT
Statistics
Matches: 114, Mismatches: 16, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
90 108 0.95
91 4 0.04
92 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (90 bp):
ATGTTGTGCTTTCACAACCATCTGGCAGCGTATTAACTTGCAACACTAGTGGTTCATCCACCCAT
TTTCAAGCAGCTCTCATCTGCAAAT
Found at i:8052799 original size:17 final size:17
Alignment explanation
Indices: 8052777--8052810 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
8052767 AATGTTAATA
8052777 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
8052794 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
8052811 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:8052993 original size:39 final size:40
Alignment explanation
Indices: 8052950--8053054 Score: 113
Period size: 44 Copynumber: 2.5 Consensus size: 40
8052940 TTCTATTATG
8052950 CTATTACACCTCTATTCCATTCAACCAAACACAAGA-TTA
1 CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
* *** *
8052989 CTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATTTG
1 CTATTACACCTCTATT-C----CATTCAACCAAACACAAGATTTA
8053034 CTATTACACCTCTATTCCATT
1 CTATTACACCTCTATTCCATT
8053055 ACTCCTCTAT
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
39 15 0.28
40 5 0.09
44 17 0.31
45 17 0.31
ACGTcount: A:0.31, C:0.30, G:0.05, T:0.34
Consensus pattern (40 bp):
CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
Found at i:8053048 original size:45 final size:44
Alignment explanation
Indices: 8052948--8053056 Score: 129
Period size: 45 Copynumber: 2.6 Consensus size: 44
8052938 TTTTCTATTA
8052948 TGCTATTACACCTCTATT-C----CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
* * ***
8052987 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGA-T
8053032 TGCTATTACACCTCTATTCCATTAC
1 TGCTATTACACCTCTATTCCATTAC
8053057 TCCTCTATTC
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 24 0.42
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.34
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
Found at i:8053061 original size:16 final size:16
Alignment explanation
Indices: 8053036--8053089 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
8053026 TTGATTTGCT
8053036 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
8053052 ATTACTCCTCTATTCC
1 ATTACACCTCTATTCC
* *
8053068 ATTACACCCCTAATCC
1 ATTACACCTCTATTCC
*
8053084 AATACA
1 ATTACA
8053090 GCGAGCCAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.30, C:0.37, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:8053271 original size:59 final size:63
Alignment explanation
Indices: 8053106--8053284 Score: 182
Period size: 56 Copynumber: 2.9 Consensus size: 63
8053096 CAAACGTGCC
8053106 CTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATAT-ATAATACTATAAAATATA
1 CTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATAATAATAC-ATAAAATATA
* * * * * *
8053169 ATCTAA-AATAATTATTATTAAATAT-AATTTAATAAAA--AT-ATATAAT-TTA-ATAAAAT-T
1 CT-TAATATTAAATATTCTT--ATATGAATTTACTAAAATCATAATATAATAATACATAAAATAT
8053226 -
63 A
8053226 CTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATAT-ATAATACTATAAAA
1 CTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATAATAATAC-ATAAAA
8053285 ATAATATATA
Statistics
Matches: 92, Mismatches: 12, Indels: 26
0.71 0.09 0.20
Matches are distributed among these distances:
55 4 0.04
56 14 0.15
57 11 0.12
58 5 0.05
59 13 0.14
61 12 0.13
62 4 0.04
63 11 0.12
64 14 0.15
65 4 0.04
ACGTcount: A:0.51, C:0.06, G:0.01, T:0.41
Consensus pattern (63 bp):
CTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATAATAATACATAAAATATA
Found at i:8053384 original size:26 final size:27
Alignment explanation
Indices: 8053348--8053403 Score: 87
Period size: 26 Copynumber: 2.1 Consensus size: 27
8053338 TAAAATATCA
8053348 TTAATGAAATAGATAATTTAATTA-TT
1 TTAATGAAATAGATAATTTAATTAGTT
* *
8053374 TTAATTAAATATATAATTTAATTAGTT
1 TTAATGAAATAGATAATTTAATTAGTT
8053401 TTA
1 TTA
8053404 TGCATTTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (27 bp):
TTAATGAAATAGATAATTTAATTAGTT
Found at i:8059040 original size:107 final size:106
Alignment explanation
Indices: 8058886--8059080 Score: 302
Period size: 107 Copynumber: 1.8 Consensus size: 106
8058876 AAAAATAATA
* *
8058886 AAGGTAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGTTGGGTTTCGATTTTTC
1 AAGGCAATATTTTACGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGTTGGGTTTCGA--TTTC
*
8058951 ACGTTCAACCAAATAGTCGAATATCTTTCCAAAAATTTCAAAT
64 ACGTTCAACCAAATAGTCAAATATCTTTCCAAAAATTTCAAAT
* * *
8058994 AAGGCAATGTTTTACGTTTGGAAATTCGAG-GAACGTGCCCTAATGTGTTGGGTTTCGATTTCTC
1 AAGGCAATATTTTACGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGTTGGGTTTCGATTTCAC
*
8059058 GTTTAACCAAATAGTCAAATATC
66 GTTCAACCAAATAGTCAAATATC
8059081 CTTTTGAATT
Statistics
Matches: 80, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
105 26 0.32
107 27 0.34
108 27 0.34
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (106 bp):
AAGGCAATATTTTACGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGTTGGGTTTCGATTTCAC
GTTCAACCAAATAGTCAAATATCTTTCCAAAAATTTCAAAT
Found at i:8062554 original size:24 final size:24
Alignment explanation
Indices: 8062527--8062572 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
8062517 AAAATCAATC
* * *
8062527 AAAGTCAAAAATAAGAGAAAAAAA
1 AAAGACAAAAAGAAAAGAAAAAAA
*
8062551 AAAGAGAAAAAGAAAAGAAAAA
1 AAAGACAAAAAGAAAAGAAAAA
8062573 GGAGAGGTCA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.78, C:0.02, G:0.15, T:0.04
Consensus pattern (24 bp):
AAAGACAAAAAGAAAAGAAAAAAA
Found at i:8062555 original size:13 final size:13
Alignment explanation
Indices: 8062533--8062572 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
8062523 AATCAAAGTC
*
8062533 AAAAATAAGAGAA
1 AAAAAAAAGAGAA
8062546 AAAAAAAAGAGAA
1 AAAAAAAAGAGAA
*
8062559 AAAGAAAAGA-AA
1 AAAAAAAAGAGAA
8062571 AA
1 AA
8062573 GGAGAGGTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 4 0.16
13 21 0.84
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (13 bp):
AAAAAAAAGAGAA
Found at i:8064798 original size:50 final size:50
Alignment explanation
Indices: 8064719--8065083 Score: 341
Period size: 50 Copynumber: 7.6 Consensus size: 50
8064709 GATGACAATT
*
8064719 AAAAAGATTGAAGCTACAACAACGGATCTTACTTTCCTATCGTTGCAGTG
1 AAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTATCGTTGCAGTG
* * * * * *
8064769 GAACAGATTGAAGCTACAGCAGCGGATCTTAC-TTCC---C-TGGCAATT
1 AAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTATCGTTGCAGTG
* *
8064814 AAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCATTGCAGTG
1 AAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTATCGTTGCAGTG
* * * * * * *
8064864 GAACAGATTGAAGCTACAGCAGTGGATCTTGC-TTCC--CCG--GCAGTT
1 AAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTATCGTTGCAGTG
*
8064909 AAAAAGAGTGAAGCTACAACAGCGGATCTTACTTTCCTAGT-GTTGCAGTG
1 AAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTA-TCGTTGCAGTG
* * * * *
8064959 GAACAGATTGAAGCTACAACAGCGGATCTTGC-TTCC--TCG--ACAGTT
1 AAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTATCGTTGCAGTG
* *
8065004 AAAAAGATTGAAGCTACAACAGCGGATCTTATTTTCCTAGT-GTTACAGTG
1 AAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTA-TCGTTGCAGTG
** * *
8065054 AAATGGATTGAAGCTATAGCAGCGGATCTT
1 AAAAAGATTGAAGCTACAACAGCGGATCTT
8065084 GCTTCCTTGG
Statistics
Matches: 253, Mismatches: 44, Indels: 36
0.76 0.13 0.11
Matches are distributed among these distances:
45 97 0.38
46 14 0.06
47 2 0.01
48 2 0.01
49 14 0.06
50 124 0.49
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.26
Consensus pattern (50 bp):
AAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTATCGTTGCAGTG
Found at i:8064877 original size:95 final size:95
Alignment explanation
Indices: 8064714--8065165 Score: 620
Period size: 95 Copynumber: 4.8 Consensus size: 95
8064704 CCATAGATGA
* *
8064714 CAATTAAAAAGATTGAAGCTACAACAACGGATCTTACTTTCCTATCGTTGCAGTGGAACAGATTG
1 CAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTG
*
8064779 AAGCTACAGCAGCGGATCTTACTTCCCTGG
66 AAGCTACAGCAGCGGATCTTGCTTCCCTGG
*
8064809 CAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCATTGCAGTGGAACAGATTG
1 CAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTG
* *
8064874 AAGCTACAGCAGTGGATCTTGCTTCCCCGG
66 AAGCTACAGCAGCGGATCTTGCTTCCCTGG
* * *
8064904 CAGTTAAAAAGAGTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTG
1 CAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTG
* *
8064969 AAGCTACAACAGCGGATCTTGCTT-CCTCGA
66 AAGCTACAGCAGCGGATCTTGCTTCCCT-GG
* * * * * **
8064999 CAGTTAAAAAGATTGAAGCTACAACAGCGGATCTTATTTTCCTAGTGTTACAGTGAAATGGATTG
1 CAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTG
* *
8065064 AAGCTATAGCAGCGGATCTTGCTTCCTTGG
66 AAGCTACAGCAGCGGATCTTGCTTCCCTGG
* * * * * * * *
8065094 CAATTCAAAAGATCGAAGCCACAACGGCGAATCTTAC-TTCCCAGGCGATGCAGCGGAACAGATT
1 CAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTA-GCGTTGCAGTGGAACAGATT
8065158 GAAGCTAC
65 GAAGCTAC
8065166 GACGGCGAAT
Statistics
Matches: 314, Mismatches: 40, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
94 7 0.02
95 305 0.97
96 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.25
Consensus pattern (95 bp):
CAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTG
AAGCTACAGCAGCGGATCTTGCTTCCCTGG
Found at i:8065217 original size:100 final size:100
Alignment explanation
Indices: 8065093--8066207 Score: 1135
Period size: 100 Copynumber: 11.2 Consensus size: 100
8065083 TGCTTCCTTG
*
8065093 GCAATTCAAAAGATCGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
1 GCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
* **
8065158 GAAGCTACGACGGCGAATCTCACTTCCTTGACATT
66 GAAGCTACGACGGCGAATCTCGCTTCCCCGACATT
* * * * *
8065193 GCAATTCAAAAGATCGAAGCCACAATGGTGAATCTTACTTCCCGGGTGATGCAGCGGAACAGATT
1 GCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
* *
8065258 GAAGCTACGACGGTGAATCTCACTTCCCCGACATT
66 GAAGCTACGACGGCGAATCTCGCTTCCCCGACATT
* * * * *
8065293 GTAATT-AAAAAATTGAAGCCACAACGGCAAATCTTACTT-CTAGGCGATGCAGCGGAACAAATT
1 GCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
* * * ***
8065356 AAAGCTACGACGGTGAATCTTGCTTCCTTTACATT
66 GAAGCTACGACGGCGAATCTCGCTTCCCCGACATT
* * * * * * * *
8065391 GCAGTTTC-AAAGATTGAAGCTACAATGGTGAATTTTACCTT-TCAGGCGATGCAACGGAACATA
1 GCA-ATTCAAAAGATTGAAGCCACAACGGCGAATCTTA-CTTCCCAGGCGATGCAGCGGAACAGA
**
8065454 TTGAAGCTATAACGGCGAATC-CTGCTTCCCCGACATT
64 TTGAAGCTACGACGGCGAATCTC-GCTTCCCCGACATT
* * * *
8065491 GCAATTCAAAAGATCGAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGCAGTGGAATAGATT
1 GCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
* * *
8065556 GAAGCTACGATGGCGAATCTCCCTTCCTCGACATT
66 GAAGCTACGACGGCGAATCTCGCTTCCCCGACATT
* * **
8065591 GCAATTTAAAATATCAAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
1 GCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
*
8065656 GAAGCTACGACGGCGAATCTCACTTCCCCGACATT
66 GAAGCTACGACGGCGAATCTCGCTTCCCCGACATT
* *
8065691 GCAATT-AAAAGATTGAAGCCACAACGGCGAATCTTACTT-TCAGGCGATGCAGCGAAACAGATT
1 GCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
* * * **
8065754 AAAGCTACGACGGTGAATCTTGCTTCCTTGACATT
66 GAAGCTACGACGGCGAATCTCGCTTCCCCGACATT
* * * * * *
8065789 GCAGTTTC-AAAGATTGAAGCTACAACGGCGAATCTTACCTT-TCAGGTGGTGCAGCGGAATAGA
1 GCA-ATTCAAAAGATTGAAGCCACAACGGCGAATCTTA-CTTCCCAGGCGATGCAGCGGAACAGA
* *
8065852 TTGAAGCTACAACGGCGAATC-CTGCTTCCCTGACATT
64 TTGAAGCTACGACGGCGAATCTC-GCTTCCCCGACATT
* * * * *
8065889 GCAATTTAAAAGATTGAGGCTACAACGGCGAATCTTAC-TCCCAGACGATGC-GACGGAATAGAT
1 GCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAG-CGGAACAGAT
* * *
8065952 TGAAGCTACGACGGTGAATCTCGTTTCCCCAACATT
65 TGAAGCTACGACGGCGAATCTCGCTTCCCCGACATT
* ** * * * * * *
8065988 GCAATTTAAAAGATTGAAGCTGCAATGGCGAATCTTGCTTTCCAGGCGGTGCAACGAAACAGATT
1 GCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
* * * * * *
8066053 GAAGCTACAATGGTGAATCTTGTTTCCCTGACATT
66 GAAGCTACGACGGCGAATCTCGCTTCCCCGACATT
**** * * * * * * *
8066088 ATGGTT-AAATAGATTGAGGCCGCAACGACGAATCTTACTTTCCCTA-GCGGTGTAGTGGAATAG
1 GCAATTCAAA-AGATTGAAGCCACAACGGCGAATCTTAC-TTCCC-AGGCGATGCAGCGGAACAG
** ** *
8066151 ATTGAAGCTACGATAGCGAATCTTACTTCCTCGACATT
63 ATTGAAGCTACGACGGCGAATCTCGCTTCCCCGACATT
*
8066189 GCAATT-AAACATATTGAAG
1 GCAATTCAAA-AGATTGAAG
8066208 AGCCAATCCT
Statistics
Matches: 850, Mismatches: 145, Indels: 39
0.82 0.14 0.04
Matches are distributed among these distances:
98 107 0.13
99 205 0.24
100 477 0.56
101 60 0.07
102 1 0.00
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (100 bp):
GCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
GAAGCTACGACGGCGAATCTCGCTTCCCCGACATT
Found at i:8065491 original size:298 final size:297
Alignment explanation
Indices: 8065100--8066207 Score: 1210
Period size: 298 Copynumber: 3.7 Consensus size: 297
8065090 TTGGCAATTC
* * * * * *
8065100 AAAAGATCGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATTGAAGCTA
1 AAAAGATTGAAGCTACAATGGCGAATCTTACTT-TCAGGCGATGCAACGAAACAGATTGAAGCTA
* * * *
8065165 CGACGGCGAAT-CTCACTTCCTTGACATTGCAATTCAAAAGATCGAAGCCACAATGGTGAATCTT
65 CAACGGCGAATCCT-GCTTCCCTGACATTGCAATTCAAAAGATCGAAGCCACAACGGTGAATCTT
* * *
8065229 ACTTCCCGGGTGATGCAGCGGAACAGATTGAAGCTACGACGGTGAATCTCACTTCCCCGACATTG
129 ACTTCCCAGGTGATGCAGCGGAATAGATTGAAGCTACGACGGCGAATCTCACTTCCCCGACATTG
* * * * *
8065294 TAA-TTAAAAAATTGAAGCCACAACGGCAAATCTTACTTCTAGGCGATGCAGCGGAACAAATTAA
194 CAATTTAAAAAATTGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGATTGA
* ***
8065358 AGCTACGACGGTGAATCTTGCTTCCTTTACATTGCAGTTT
259 AGCTACGACGGTGAATCTCGCTTCCCCAACATTGCA-TTT
* * * * *
8065398 CAAAGATTGAAGCTACAATGGTGAATTTTACCTTTCAGGCGATGCAACGGAACATATTGAAGCTA
1 AAAAGATTGAAGCTACAATGGCGAATCTTA-CTTTCAGGCGATGCAACGAAACAGATTGAAGCTA
* *
8065463 TAACGGCGAATCCTGCTTCCCCGACATTGCAATTCAAAAGATCGAAGCCACAACGGTGAATCTTA
65 CAACGGCGAATCCTGCTTCCCTGACATTGCAATTCAAAAGATCGAAGCCACAACGGTGAATCTTA
* * * * *
8065528 CTTCCCAGGCGATGCAGTGGAATAGATTGAAGCTACGATGGCGAATCTCCCTTCCTCGACATTGC
130 CTTCCCAGGTGATGCAGCGGAATAGATTGAAGCTACGACGGCGAATCTCACTTCCCCGACATTGC
* **
8065593 AATTTAAAATATCAAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATTGA
195 AATTTAAAAAATTGAAGCCACAACGGCGAATCTTACTT-CCAGGCGATGCAGCGGAACAGATTGA
* * * *
8065658 AGCTACGACGGCGAATCTCACTTCCCCGACATTGCAATT
259 AGCTACGACGGTGAATCTCGCTTCCCCAACATTGCATTT
* * * *
8065697 AAAAGATTGAAGCCACAACGGCGAATCTTACTTTCAGGCGATGCAGCGAAACAGATTAAAGCTAC
1 AAAAGATTGAAGCTACAATGGCGAATCTTACTTTCAGGCGATGCAACGAAACAGATTGAAGCTAC
* * * * * * * *
8065762 GACGGTGAATCTTGCTTCCTTGACATTGCAGTTTC-AAAGATTGAAGCTACAACGGCGAATCTTA
66 AACGGCGAATCCTGCTTCCCTGACATTGCA-ATTCAAAAGATCGAAGCCACAACGGTGAATCTTA
* * * * *
8065826 CCTT-TCAGGTGGTGCAGCGGAATAGATTGAAGCTACAACGGCGAATC-CTGCTTCCCTGACATT
130 -CTTCCCAGGTGATGCAGCGGAATAGATTGAAGCTACGACGGCGAATCTC-ACTTCCCCGACATT
* * * * * *
8065889 GCAATTTAAAAGATTGAGGCTACAACGGCGAATCTTACTCCCAGACGATGC-GACGGAATAGATT
193 GCAATTTAAAAAATTGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAG-CGGAACAGATT
*
8065953 GAAGCTACGACGGTGAATCTCGTTTCCCCAACATTGCAATTT
257 GAAGCTACGACGGTGAATCTCGCTTCCCCAACATTGC-ATTT
* * *
8065995 AAAAGATTGAAGCTGCAATGGCGAATCTTGCTTTCCAGGCGGTGCAACGAAACAGATTGAAGCTA
1 AAAAGATTGAAGCTACAATGGCGAATCTTACTTT-CAGGCGATGCAACGAAACAGATTGAAGCTA
* * * * **** * * * **
8066060 CAATGGTGAATCTTGTTTCCCTGACATTATGGTT-AAATAGATTGAGGCCGCAACGACGAATCTT
65 CAACGGCGAATCCTGCTTCCCTGACATTGCAATTCAAA-AGATCGAAGCCACAACGGTGAATCTT
* * ** * *
8066124 ACTTTCCCTAGCG-G-TGTAGTGGAATAGATTGAAGCTACGATAGCGAATCTTACTTCCTCGACA
129 AC-TTCCC-AG-GTGATGCAGCGGAATAGATTGAAGCTACGACGGCGAATCTCACTTCCCCGACA
*
8066187 TTGCAA-TTAAACATATTGAAG
191 TTGCAATTTAAA-AAATTGAAG
8066208 AGCCAATCCT
Statistics
Matches: 682, Mismatches: 110, Indels: 34
0.83 0.13 0.04
Matches are distributed among these distances:
296 1 0.00
297 54 0.08
298 367 0.54
299 150 0.22
300 106 0.16
301 3 0.00
302 1 0.00
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (297 bp):
AAAAGATTGAAGCTACAATGGCGAATCTTACTTTCAGGCGATGCAACGAAACAGATTGAAGCTAC
AACGGCGAATCCTGCTTCCCTGACATTGCAATTCAAAAGATCGAAGCCACAACGGTGAATCTTAC
TTCCCAGGTGATGCAGCGGAATAGATTGAAGCTACGACGGCGAATCTCACTTCCCCGACATTGCA
ATTTAAAAAATTGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGATTGAAG
CTACGACGGTGAATCTCGCTTCCCCAACATTGCATTT
Found at i:8066008 original size:50 final size:50
Alignment explanation
Indices: 8065453--8066022 Score: 156
Period size: 50 Copynumber: 11.5 Consensus size: 50
8065443 AACGGAACAT
* * * *
8065453 ATTGAAGCTATAACGGCGAATC-CTGCTTCCCCGACATTGCAATTCAAAAG
1 ATTGAAGCTACAACGGCGAATCTC-GTTTCCCCAACATTGCAATTTAAAAG
* * * *** * * ** *
8065503 ATCGAAGCCACAACGGTGAATCTTACTT-CCCAGGCGA-TGCAGTGGAATAG
1 ATTGAAGCTACAACGGCGAATCTCGTTTCCCCA-AC-ATTGCAATTTAAAAG
* * ** * * *
8065553 ATTGAAGCTACGATGGCGAATCTCCCTTCCTCGACATTGCAATTTAAAAT
1 ATTGAAGCTACAACGGCGAATCTCGTTTCCCCAACATTGCAATTTAAAAG
** * *** * **** *
8065603 ATCAAAGCCACAACGGCGAATCTTACTT-CCCAGGCGA-TGCAGCGGAACAG
1 ATTGAAGCTACAACGGCGAATCTCGTTTCCCCA-AC-ATTGCAATTTAAAAG
* ** *
8065653 ATTGAAGCTACGACGGCGAATCTCACTTCCCCGACATTGCAA-TTAAAAG
1 ATTGAAGCTACAACGGCGAATCTCGTTTCCCCAACATTGCAATTTAAAAG
* * ***
8065702 ATTGAAGCCACAACGGCGAATCTTAC-TTT---CAGGCGA-TGC-AGCGAAACAG
1 ATTGAAGCTACAACGGCGAATC-T-CGTTTCCCCA-AC-ATTGCAATTTAAA-AG
* * * * * *** * *
8065751 ATTAAAGCTACGACGGTGAATCTTGCTTCCTTGACATTGCAGTTTCAAAG
1 ATTGAAGCTACAACGGCGAATCTCGTTTCCCCAACATTGCAATTTAAAAG
* ** **** *
8065801 ATTGAAGCTACAACGGCGAATCTTACCTTT---C-AGGTGGTGCAGCGGAATAG
1 ATTGAAGCTACAACGGCGAATC-T-CGTTTCCCCAACAT--TGCAATTTAAAAG
* **
8065851 ATTGAAGCTACAACGGCGAATC-CTGCTTCCCTGACATTGCAATTTAAAAG
1 ATTGAAGCTACAACGGCGAATCTC-GTTTCCCCAACATTGCAATTTAAAAG
* * * *** *
8065901 ATTGAGGCTACAACGGCGAA--TC-TTACTCCCAGACGA-TGCGACGGAATAG
1 ATTGAAGCTACAACGGCGAATCTCGTTTC-CCCA-AC-ATTGCAATTTAAAAG
* *
8065950 ATTGAAGCTACGACGGTGAATCTCGTTTCCCCAACATTGCAATTTAAAAG
1 ATTGAAGCTACAACGGCGAATCTCGTTTCCCCAACATTGCAATTTAAAAG
* *
8066000 ATTGAAGCTGCAATGGCGAATCT
1 ATTGAAGCTACAACGGCGAATCT
8066023 TGCTTTCCAG
Statistics
Matches: 360, Mismatches: 122, Indels: 76
0.65 0.22 0.14
Matches are distributed among these distances:
47 5 0.01
48 16 0.04
49 82 0.23
50 233 0.65
51 17 0.05
52 7 0.02
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.24
Consensus pattern (50 bp):
ATTGAAGCTACAACGGCGAATCTCGTTTCCCCAACATTGCAATTTAAAAG
Found at i:8066104 original size:398 final size:399
Alignment explanation
Indices: 8065093--8066129 Score: 1488
Period size: 398 Copynumber: 2.6 Consensus size: 399
8065083 TGCTTCCTTG
*
8065093 GCAATTCAAAAGATCGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATT
1 GCAATTCAAAAGATCGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAATAGATT
* * *
8065158 GAAGCTACGACGGCGAATCTCACTTCCTTGACATTGCAATTCAAAAGATCGAAGCCACAATGGTG
66 GAAGCTACGACGGCGAATCTCACTTCCTCGACATTGCAATTTAAAAGATCGAAGCCACAATGGCG
* *
8065223 AATCTTACTTCCCGGGTGATGCAGCGGAACAGATTGAAGCTACGACGGTGAATCTCACTTCCCCG
131 AATCTTACTTCCCAGGCGATGCAGCGGAACAGATTGAAGCTACGACGGTGAATCTCACTTCCCCG
* * *
8065288 ACATTGTAATTAAAAAATTGAAGCCACAACGGCAAATCTTAC-TTCTAGGCGATGCAGCGGAACA
196 ACATTGTAATTAAAAGATTGAAGCCACAACGGCGAATCTTACTTTCTAGGCGATGCAGCGAAACA
* *
8065352 AATTAAAGCTACGACGGTGAATCTTGCTTCCTTTACATTGCAGTTTCAAAGATTGAAGCTACAAT
261 AATTAAAGCTACGACGGTGAATCTTGCTTCCTTGACATTGCAGTTTCAAAGATTGAAGCTACAAC
* * * *
8065417 GGTGAATTTTACCTTTCAGGCGATGCAACGGAACATATTGAAGCTATAACGGCGAATCCTGCTTC
326 GGCGAATCTTACCTTTCAGGCGATGCAACGGAACAGATTGAAGCTACAACGGCGAATCCTGCTTC
8065482 CCCGACATT
391 CCCGACATT
* *
8065491 GCAATTCAAAAGATCGAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGCAGTGGAATAGATT
1 GCAATTCAAAAGATCGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAATAGATT
* * * * *
8065556 GAAGCTACGATGGCGAATCTCCCTTCCTCGACATTGCAATTTAAAATATCAAAGCCACAACGGCG
66 GAAGCTACGACGGCGAATCTCACTTCCTCGACATTGCAATTTAAAAGATCGAAGCCACAATGGCG
*
8065621 AATCTTACTTCCCAGGCGATGCAGCGGAACAGATTGAAGCTACGACGGCGAATCTCACTTCCCCG
131 AATCTTACTTCCCAGGCGATGCAGCGGAACAGATTGAAGCTACGACGGTGAATCTCACTTCCCCG
*
8065686 ACATTGCAATTAAAAGATTGAAGCCACAACGGCGAATCTTACTTTC-AGGCGATGCAGCGAAACA
196 ACATTGTAATTAAAAGATTGAAGCCACAACGGCGAATCTTACTTTCTAGGCGATGCAGCGAAACA
*
8065750 GATTAAAGCTACGACGGTGAATCTTGCTTCCTTGACATTGCAGTTTCAAAGATTGAAGCTACAAC
261 AATTAAAGCTACGACGGTGAATCTTGCTTCCTTGACATTGCAGTTTCAAAGATTGAAGCTACAAC
* * * *
8065815 GGCGAATCTTACCTTTCAGGTGGTGCAGCGGAATAGATTGAAGCTACAACGGCGAATCCTGCTTC
326 GGCGAATCTTACCTTTCAGGCGATGCAACGGAACAGATTGAAGCTACAACGGCGAATCCTGCTTC
*
8065880 CCTGACATT
391 CCCGACATT
* * * * *
8065889 GCAATTTAAAAGATTGAGGCTACAACGGCGAATCTTAC-TCCCAGACGATGC-GACGGAATAGAT
1 GCAATTCAAAAGATCGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAG-CGGAATAGAT
* ** * * * **
8065952 TGAAGCTACGACGGTGAATCTCGTTTCCCCAACATTGCAATTTAAAAGATTGAAGCTGCAATGGC
65 TGAAGCTACGACGGCGAATCTCACTTCCTCGACATTGCAATTTAAAAGATCGAAGCCACAATGGC
* * * * * * * *** *
8066017 GAATCTTGCTTTCCAGGCGGTGCAACGAAACAGATTGAAGCTACAATGGTGAATCTTGTTTCCCT
130 GAATCTTACTTCCCAGGCGATGCAGCGGAACAGATTGAAGCTACGACGGTGAATCTCACTTCCCC
* ** * * *
8066082 GACATTATGGTTAAATAGATTGAGGCCGCAACGACGAATCTTACTTTC
195 GACATTGTAATTAAA-AGATTGAAGCCACAACGGCGAATCTTACTTTC
8066130 CCTAGCGGTG
Statistics
Matches: 568, Mismatches: 68, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
396 1 0.00
397 138 0.24
398 426 0.75
399 3 0.01
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (399 bp):
GCAATTCAAAAGATCGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAATAGATT
GAAGCTACGACGGCGAATCTCACTTCCTCGACATTGCAATTTAAAAGATCGAAGCCACAATGGCG
AATCTTACTTCCCAGGCGATGCAGCGGAACAGATTGAAGCTACGACGGTGAATCTCACTTCCCCG
ACATTGTAATTAAAAGATTGAAGCCACAACGGCGAATCTTACTTTCTAGGCGATGCAGCGAAACA
AATTAAAGCTACGACGGTGAATCTTGCTTCCTTGACATTGCAGTTTCAAAGATTGAAGCTACAAC
GGCGAATCTTACCTTTCAGGCGATGCAACGGAACAGATTGAAGCTACAACGGCGAATCCTGCTTC
CCCGACATT
Found at i:8066941 original size:132 final size:132
Alignment explanation
Indices: 8066704--8067425 Score: 1124
Period size: 132 Copynumber: 5.5 Consensus size: 132
8066694 AGCTACGAAT
*
8066704 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
1 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAATAC
* * *
8066769 AGTGGAGAAGCAGATTTAAGCCATTTGTCCTATCACCCTAAGCAGTAGTGGAGTGGGTTGAAGAT
66 AGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCGAAGAT
*
8066834 TA
131 TG
8066836 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAATAC
1 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAATAC
* *
8066901 AGTGGAGAAGCATATTTAAGCCATTAGTCTTATCACCCTAAGCAGTAGTGGAGTAGGTCGAAGAT
66 AGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCGAAGAT
8066966 TG
131 TG
*
8066968 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
1 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAATAC
* * * * *
8067033 AGTGGAGAAGCATATTTAAGCCGTTACTCCTATCACCCTAAGCAGTAGTGGAATAGGTCAAAGAT
66 AGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCGAAGAT
8067098 TG
131 TG
* * * * * *
8067100 CAGATTCTGTCACCCTAAGCAGTAGTGGGGTAGATCGAAGATGGTAAATTTTATCTTCCCAAGAC
1 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAATAC
* *
8067165 ATTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGAT
66 AGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCGAAGAT
8067230 TG
131 TG
* * *
8067232 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTAAATCTTATCTTCCCAAGAT
1 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAATAC
** * * *
8067297 AGTCAAGAAGCAGATTTGAA-CCATTAGTCCTATCACCCTAAGAAGTAGTGGAATAGGTCAAAGA
66 AGTGGAGAAGCAGATTT-AAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCGAAGA
8067361 TTG
130 TTG
* * *
8067364 TAGATTCTGT-ATCCCTAAGCAATAGTGGAGCAGATCAAAGACGGTGAATCTTATCTTCCCAA
1 CAGATTCTGTCA-CCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAA
8067426 GATAGTAGGG
Statistics
Matches: 547, Mismatches: 41, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
131 1 0.00
132 544 0.99
133 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.26
Consensus pattern (132 bp):
CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAATAC
AGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCGAAGAT
TG
Found at i:8067273 original size:44 final size:44
Alignment explanation
Indices: 8066798--8067273 Score: 181
Period size: 44 Copynumber: 10.8 Consensus size: 44
8066788 GCCATTTGTC
** * * *
8066798 CTATCACCCTAAGCAGTAGTGGAGTGGGTTGAAGATTACAGATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATCGAAGATTGCAGATT
* * ** *
8066842 CTGTCACCCTAAGCAGTAGTGGAGCAGATCAAAGA-TGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATCGAAGATTGCAGATT
* * * * * * **
8066885 CTTATCTTCCC-AATACAGTGGAGAAGCATATTTAAGCCATT--AG--T
1 C-TATC-ACCCTAA-GCAGTAGTGGAGCAGATCGAAG--ATTGCAGATT
* *
8066929 CTTATCACCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGCAGATT
1 C-TATCACCCTAAGCAGTAGTGGAGCAGATCGAAGATTGCAGATT
* ** *
8066974 CTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGA-TGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATCGAAGATTGCAGATT
* * * * * * ** * * *
8067017 CTTATCTTCCC-AATACAGTGGAGAAGCATATTTAAGCCGTT--A-CTC
1 C-TATC-ACCCTAA-GCAGTAGTGGAGCAGATCGAAG--ATTGCAGATT
** * *
8067062 CTATCACCCTAAGCAGTAGTGGAATAGGTCAAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATCGAAGATTGCAGATT
* * * * * *
8067106 CTGTCACCCTAAGCAGTAGTGGGGTAGATCGAAGATGGTAAATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATCGAAGATTGCAGATT
* * * * * * ** *
8067150 TTATCTTCCC-AAGACATTGGAGAAGCAGATTTAAGCCATT--AG-TC
1 CTATC-ACCCTAAG-CAGTAGTGGAGCAGATCGAAG--ATTGCAGATT
* * *
8067194 CTATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATCGAAGATTGCAGATT
* *
8067238 CTGTCACCCTAAGCAGTAGTGGAGCAGATCAAAGAT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATCGAAGAT
8067274 GGTAAATCTT
Statistics
Matches: 302, Mismatches: 101, Indels: 58
0.66 0.22 0.13
Matches are distributed among these distances:
41 8 0.03
43 64 0.21
44 168 0.56
45 56 0.19
46 1 0.00
47 3 0.01
48 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (44 bp):
CTATCACCCTAAGCAGTAGTGGAGCAGATCGAAGATTGCAGATT
Found at i:8067765 original size:27 final size:28
Alignment explanation
Indices: 8067718--8067772 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
8067708 CATAAAACCC
*
8067718 AATTACAACCCAAACCCAATACCTAACA
1 AATTACAACCCAAACCCAATACCCAACA
*
8067746 AATTA-AA-CCAAGCCCAAATACCCAACA
1 AATTACAACCCAAACCC-AATACCCAACA
8067773 GGCCCAAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 7 0.29
27 12 0.50
28 5 0.21
ACGTcount: A:0.51, C:0.35, G:0.02, T:0.13
Consensus pattern (28 bp):
AATTACAACCCAAACCCAATACCCAACA
Found at i:8068204 original size:13 final size:13
Alignment explanation
Indices: 8068186--8068210 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8068176 TTTTCATTTT
8068186 ATTTTGTTTTATC
1 ATTTTGTTTTATC
8068199 ATTTTGTTTTAT
1 ATTTTGTTTTAT
8068211 ACCCTTTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.08, T:0.72
Consensus pattern (13 bp):
ATTTTGTTTTATC
Found at i:8069933 original size:105 final size:106
Alignment explanation
Indices: 8069738--8069934 Score: 299
Period size: 107 Copynumber: 1.9 Consensus size: 106
8069728 AAAAATAATA
* *
8069738 AAGGTAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTATGTGCTGGGTTTCGATTTTTCT
1 AAGGCAATATTTTACGTTTGGAAATTCGAGAAAACGTGCCCTATGTGCTGGGTTTCGA-TTTTCT
*
8069803 CGTTCAACCAAATAGTCGAATATCCTTCCAAAAATTTCAAAT
65 CGTTCAACCAAATAGTCAAATATCCTTCCAAAAATTTCAAAT
* * *
8069845 AAGGCAATGTTTTACGTTTGGAAATTCGAG-GAACGTGCCCTAATGTGTTGGGTTTCGA-TTTCT
1 AAGGCAATATTTTACGTTTGGAAATTCGAGAAAACGTGCCCT-ATGTGCTGGGTTTCGATTTTCT
*
8069908 CGTTTAACCAAATAGTCAAATATCCTT
65 CGTTCAACCAAATAGTCAAATATCCTT
8069935 TTGAATTTCA
Statistics
Matches: 82, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
105 30 0.37
106 10 0.12
107 42 0.51
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.35
Consensus pattern (106 bp):
AAGGCAATATTTTACGTTTGGAAATTCGAGAAAACGTGCCCTATGTGCTGGGTTTCGATTTTCTC
GTTCAACCAAATAGTCAAATATCCTTCCAAAAATTTCAAAT
Found at i:8078921 original size:61 final size:61
Alignment explanation
Indices: 8078834--8078954 Score: 149
Period size: 61 Copynumber: 2.0 Consensus size: 61
8078824 GCCAAATTTA
* * *
8078834 TTGAATTTTTAAAATTAGAACTAAAATGAA-AAATTTTGTAAACATT-GAGGGATAATTTTG
1 TTGAATTTTTAAAATTAGAACTAAAAT-AATAAAATGTGTAAACATTAAAGGGATAATTTTG
* *
8078894 TTGAATTTTTTATATTTAGAA-TCAAAATAATAAAATGTGTAAACATTAAAGGGATAATTTT
1 TTGAA-TTTTTAAAATTAGAACT-AAAATAATAAAATGTGTAAACATTAAAGGGATAATTTT
8078955 ATTACTAGAC
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
60 8 0.15
61 32 0.62
62 12 0.23
ACGTcount: A:0.44, C:0.03, G:0.13, T:0.40
Consensus pattern (61 bp):
TTGAATTTTTAAAATTAGAACTAAAATAATAAAATGTGTAAACATTAAAGGGATAATTTTG
Found at i:8080609 original size:19 final size:19
Alignment explanation
Indices: 8080569--8080620 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
8080559 CATTACTCGG
* *
8080569 ACACAAAGTGCATCTTGAC
1 ACACAAGGTGCATCCTGAC
*
8080588 ACACAAGGTGCATCCTGCC
1 ACACAAGGTGCATCCTGAC
**
8080607 ACATGAGGTGCATC
1 ACACAAGGTGCATC
8080621 TTGGCGCATA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.19
Consensus pattern (19 bp):
ACACAAGGTGCATCCTGAC
Found at i:8087401 original size:29 final size:29
Alignment explanation
Indices: 8087368--8087423 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 29
8087358 AAATTTTAAT
8087368 AAATTA-TATATATTTA-TAATTTTCTAAAG
1 AAATTATTATAT-TTTATTAA-TTTCTAAAG
8087397 AAATTATTATATTTTATTAATTTCTAA
1 AAATTATTATATTTTATTAATTTCTAA
8087424 TAAATTTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
29 17 0.68
30 8 0.32
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.52
Consensus pattern (29 bp):
AAATTATTATATTTTATTAATTTCTAAAG
Found at i:8087795 original size:30 final size:30
Alignment explanation
Indices: 8087752--8087825 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 30
8087742 TCAATAAGTT
* * * *
8087752 TTTTTATTAATTTTTATAGATTTTTTTATCA
1 TTTTAATT-ATTTTTATAGAATCTTCTATCA
*
8087783 TTTTAATTATTTTTATATAATCTTCTATCA
1 TTTTAATTATTTTTATAGAATCTTCTATCA
8087813 TTTCTAATT-TTTT
1 TTT-TAATTATTTT
8087826 ATAATATTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
30 25 0.68
31 12 0.32
ACGTcount: A:0.26, C:0.07, G:0.01, T:0.66
Consensus pattern (30 bp):
TTTTAATTATTTTTATAGAATCTTCTATCA
Found at i:8087888 original size:19 final size:18
Alignment explanation
Indices: 8087864--8087939 Score: 73
Period size: 19 Copynumber: 4.1 Consensus size: 18
8087854 TCATAACATA
* *
8087864 TTAATAGTTTTTTTAATAT
1 TTAATAATTTTTATAAT-T
8087883 TTAATAATTTTTATAATT
1 TTAATAATTTTTATAATT
* *
8087901 TTAA-AAATTTTATGATAT
1 TTAATAATTTTTATAAT-T
*
8087919 TTAATAATTTTGATAGATT
1 TTAATAATTTTTATA-ATT
8087938 TT
1 TT
8087940 TTTTATAAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
17 10 0.21
18 10 0.21
19 25 0.53
20 2 0.04
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (18 bp):
TTAATAATTTTTATAATT
Found at i:8087893 original size:18 final size:18
Alignment explanation
Indices: 8087872--8087929 Score: 73
Period size: 18 Copynumber: 3.2 Consensus size: 18
8087862 TATTAATAGT
8087872 TTTTTTAATATTTAATAA
1 TTTTTTAATATTTAATAA
*
8087890 TTTTTATAAT-TTTAAAAA
1 TTTTT-TAATATTTAATAA
* *
8087908 TTTTATGATATTTAATAA
1 TTTTTTAATATTTAATAA
8087926 TTTT
1 TTTT
8087930 GATAGATTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
17 3 0.09
18 27 0.79
19 4 0.12
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (18 bp):
TTTTTTAATATTTAATAA
Found at i:8087947 original size:49 final size:51
Alignment explanation
Indices: 8087890--8088005 Score: 132
Period size: 49 Copynumber: 2.3 Consensus size: 51
8087880 TATTTAATAA
*
8087890 TTTTTATAATTTTAAAAATTTTATGATA-TTTAAT-AATTTT-G-ATAGATTT
1 TTTTTATAATTTTAAAAATTTTA-AATATTTTAATGAATTTTAGCATA-ATTT
* *
8087939 TTTTTATAAATTTCAAAATTTTAAATATTTTAATGAATTTTAGCTATAATTT
1 TTTTTATAATTTTAAAAATTTTAAATATTTTAATGAATTTTAGC-ATAATTT
* *
8087991 TTATAATAATTTTAA
1 TTTTTATAATTTTAA
8088006 TATTTTGGTT
Statistics
Matches: 55, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
48 3 0.05
49 27 0.49
50 6 0.11
51 1 0.02
52 15 0.27
53 3 0.05
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (51 bp):
TTTTTATAATTTTAAAAATTTTAAATATTTTAATGAATTTTAGCATAATTT
Found at i:8088043 original size:10 final size:10
Alignment explanation
Indices: 8087877--8088034 Score: 50
Period size: 9 Copynumber: 15.7 Consensus size: 10
8087867 ATAGTTTTTT
8087877 TAATATTTA-A
1 TAAT-TTTATA
8087887 TAATTTT-TA
1 TAATTTTATA
8087896 TAATTTTA-A
1 TAATTTTATA
*
8087905 AAATTTTATGA
1 TAATTTTAT-A
8087916 T-A-TTTA-A
1 TAATTTTATA
8087923 TAATTTTGATA
1 TAATTTT-ATA
* * *
8087934 GATTTTTTTTA
1 TA-ATTTTATA
*
8087945 TAAATTTCA-A
1 T-AATTTTATA
*
8087955 -AATTTTAAA
1 TAATTTTATA
8087964 T-ATTTTA-A
1 TAATTTTATA
8087972 TGAATTTTAGCTA
1 T-AATTTTA--TA
8087985 TAATTTTTATAA
1 TAA-TTTTAT-A
8087997 TAATTTTA-A
1 TAATTTTATA
* * *
8088006 TATTTTGGTTTT
1 TAATTT--TATA
8088018 TAATTTTATA
1 TAATTTTATA
8088028 TAATTTT
1 TAATTTT
8088035 CTATCATTTC
Statistics
Matches: 110, Mismatches: 16, Indels: 44
0.65 0.09 0.26
Matches are distributed among these distances:
7 2 0.02
8 9 0.08
9 39 0.35
10 22 0.20
11 15 0.14
12 16 0.15
13 7 0.06
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.57
Consensus pattern (10 bp):
TAATTTTATA
Found at i:8088077 original size:19 final size:18
Alignment explanation
Indices: 8088040--8088082 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
8088030 ATTTTCTATC
8088040 ATTTCTAAAAAAAATTAAT
1 ATTT-TAAAAAAAATTAAT
*
8088059 ATTTTAAAAAAATTATAAT
1 ATTTTAAAAAAAAT-TAAT
8088078 ATTTT
1 ATTTT
8088083 GATAACTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.41
19 13 0.59
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (18 bp):
ATTTTAAAAAAAATTAAT
Found at i:8089133 original size:28 final size:29
Alignment explanation
Indices: 8089087--8089160 Score: 80
Period size: 27 Copynumber: 2.6 Consensus size: 29
8089077 TTTTTAATAT
*
8089087 GAAAAAAAAAACAATGAGAGAG-AAA-AG
1 GAAAAAAAAAACAAAGAGAGAGTAAAGAG
* *
8089114 GAAAAAAAAATCAAGAGAGATAGTAAAGAG
1 GAAAAAAAAAACAA-AGAGAGAGTAAAGAG
* *
8089144 GAAAAAAGAAAGAAAGA
1 GAAAAAAAAAACAAAGA
8089161 ATAAAAGAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
27 13 0.34
28 6 0.16
29 6 0.16
30 13 0.34
ACGTcount: A:0.69, C:0.03, G:0.23, T:0.05
Consensus pattern (29 bp):
GAAAAAAAAAACAAAGAGAGAGTAAAGAG
Found at i:8094875 original size:51 final size:51
Alignment explanation
Indices: 8094816--8094921 Score: 194
Period size: 51 Copynumber: 2.1 Consensus size: 51
8094806 ATAGAATTTC
*
8094816 AATTGGTATTAGAGTTAAACACTTGACGCACTAAGTAAAGATCATGTCATT
1 AATTGGTATTAGAGTTAAACACTTGACGCACCAAGTAAAGATCATGTCATT
*
8094867 AATTGGTATTAGAGTTAAACACTTGACGTACCAAGTAAAGATCATGTCATT
1 AATTGGTATTAGAGTTAAACACTTGACGCACCAAGTAAAGATCATGTCATT
8094918 AATT
1 AATT
8094922 TTTTTAGAGA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (51 bp):
AATTGGTATTAGAGTTAAACACTTGACGCACCAAGTAAAGATCATGTCATT
Found at i:8100363 original size:22 final size:23
Alignment explanation
Indices: 8100338--8100399 Score: 65
Period size: 24 Copynumber: 2.7 Consensus size: 23
8100328 TTACAATAAA
8100338 TTCCAATTT-ATT-TGTGATAATT
1 TTCC-ATTTAATTGTGTGATAATT
*
8100360 TTCCCTTTGAATTGTGTGATAATT
1 TTCCATTT-AATTGTGTGATAATT
*
8100384 TTCCCTTTGAATTGTG
1 TTCCATTT-AATTGTG
8100400 CTATTTAAGT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
21 3 0.08
22 4 0.11
23 3 0.08
24 26 0.72
ACGTcount: A:0.21, C:0.13, G:0.15, T:0.52
Consensus pattern (23 bp):
TTCCATTTAATTGTGTGATAATT
Found at i:8100382 original size:24 final size:24
Alignment explanation
Indices: 8100350--8100399 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
8100340 CCAATTTATT
8100350 TGTGATAATTTTCCCTTTGAATTG
1 TGTGATAATTTTCCCTTTGAATTG
8100374 TGTGATAATTTTCCCTTTGAATTG
1 TGTGATAATTTTCCCTTTGAATTG
8100398 TG
1 TG
8100400 CTATTTAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.20, C:0.12, G:0.18, T:0.50
Consensus pattern (24 bp):
TGTGATAATTTTCCCTTTGAATTG
Found at i:8101540 original size:28 final size:28
Alignment explanation
Indices: 8101509--8101595 Score: 76
Period size: 28 Copynumber: 3.1 Consensus size: 28
8101499 CATTACCAAC
8101509 CAATTCATATACAAATCATGCTAATACT
1 CAATTCATATACAAATCATGCTAATACT
* *
8101537 CAATCCA-ATTCAAATACCAT--TACCA-AC-
1 CAATTCATATACAAAT--CATGCTA--ATACT
*
8101564 CACTTCATATACAAATCATGCTAATACT
1 CAATTCATATACAAATCATGCTAATACT
8101592 CAAT
1 CAAT
8101596 CCACAAAATA
Statistics
Matches: 44, Mismatches: 6, Indels: 18
0.65 0.09 0.26
Matches are distributed among these distances:
26 4 0.09
27 16 0.36
28 20 0.45
29 4 0.09
ACGTcount: A:0.43, C:0.26, G:0.02, T:0.29
Consensus pattern (28 bp):
CAATTCATATACAAATCATGCTAATACT
Found at i:8101545 original size:33 final size:33
Alignment explanation
Indices: 8101508--8101598 Score: 87
Period size: 33 Copynumber: 3.1 Consensus size: 33
8101498 CCATTACCAA
8101508 CCAATTCATATACAAATCATGCTAATACTCAAT
1 CCAATTCATATACAAATCATGCTAATACTCAAT
*
8101541 CCAATTCAAATAC----CA---T--TAC-CAA-
1 CCAATTCATATACAAATCATGCTAATACTCAAT
*
8101563 CCACTTCATATACAAATCATGCTAATACTCAAT
1 CCAATTCATATACAAATCATGCTAATACTCAAT
8101596 CCA
1 CCA
8101599 CAAAATAACA
Statistics
Matches: 44, Mismatches: 3, Indels: 22
0.64 0.04 0.32
Matches are distributed among these distances:
22 11 0.25
23 3 0.07
24 3 0.07
26 3 0.07
29 3 0.07
31 3 0.07
32 3 0.07
33 15 0.34
ACGTcount: A:0.42, C:0.29, G:0.02, T:0.27
Consensus pattern (33 bp):
CCAATTCATATACAAATCATGCTAATACTCAAT
Found at i:8101549 original size:55 final size:55
Alignment explanation
Indices: 8101484--8101598 Score: 221
Period size: 55 Copynumber: 2.1 Consensus size: 55
8101474 AATTGCAGAT
8101484 ATCCAATTCAAATACCATTACCAACCAATTCATATACAAATCATGCTAATACTCA
1 ATCCAATTCAAATACCATTACCAACCAATTCATATACAAATCATGCTAATACTCA
*
8101539 ATCCAATTCAAATACCATTACCAACCACTTCATATACAAATCATGCTAATACTCA
1 ATCCAATTCAAATACCATTACCAACCAATTCATATACAAATCATGCTAATACTCA
8101594 ATCCA
1 ATCCA
8101599 CAAAATAACA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 59 1.00
ACGTcount: A:0.43, C:0.29, G:0.02, T:0.27
Consensus pattern (55 bp):
ATCCAATTCAAATACCATTACCAACCAATTCATATACAAATCATGCTAATACTCA
Found at i:8125415 original size:15 final size:16
Alignment explanation
Indices: 8125397--8125426 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8125387 CAGAAATAAG
8125397 CTGTTCAGGT-TTAGT
1 CTGTTCAGGTATTAGT
8125412 CTGTTCAGGTATTAG
1 CTGTTCAGGTATTAG
8125427 CTCTTCTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.17, C:0.13, G:0.27, T:0.43
Consensus pattern (16 bp):
CTGTTCAGGTATTAGT
Found at i:8127264 original size:13 final size:13
Alignment explanation
Indices: 8127246--8127270 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8127236 TAAGTTATAT
8127246 GTGTGAAAATTTC
1 GTGTGAAAATTTC
8127259 GTGTGAAAATTT
1 GTGTGAAAATTT
8127271 GATAGTTTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:8128981 original size:41 final size:41
Alignment explanation
Indices: 8128922--8129026 Score: 124
Period size: 41 Copynumber: 2.6 Consensus size: 41
8128912 GGTTTAAAAC
* * * * *
8128922 CTAGCAGGCTTAAG-GCCGGTGAAGTTATTCGGACTTTATGT
1 CTAGCAGGCTT-TGTGCCGGTGAAATAATTCAGACTTTAAGT
8128963 CTAGCAGGCTTTGTGCCGGTGAAATAATTCAGACTTTAAGT
1 CTAGCAGGCTTTGTGCCGGTGAAATAATTCAGACTTTAAGT
*
8129004 CTAGCAGGCTAAT-TGCCGGTGAA
1 CTAGCAGGCT-TTGTGCCGGTGAA
8129027 TTGAATTAGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
40 1 0.02
41 54 0.96
42 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (41 bp):
CTAGCAGGCTTTGTGCCGGTGAAATAATTCAGACTTTAAGT
Found at i:8134137 original size:29 final size:28
Alignment explanation
Indices: 8134090--8134171 Score: 94
Period size: 29 Copynumber: 2.9 Consensus size: 28
8134080 ACGAGATGCA
* * *
8134090 AAAGTGCAAGTCAAAGTGGCAGACAATCC
1 AAAGTACAAGCCAAAGTGGCGGACAAT-C
*
8134119 AAAGTACAAGCCAAGGTGGCGGACAATC
1 AAAGTACAAGCCAAAGTGGCGGACAATC
*
8134147 TAAGTGA-AAGCCAAAGTGGCGGACA
1 AAAGT-ACAAGCCAAAGTGGCGGACA
8134172 GTCTAACTGC
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
28 22 0.48
29 24 0.52
ACGTcount: A:0.40, C:0.20, G:0.28, T:0.12
Consensus pattern (28 bp):
AAAGTACAAGCCAAAGTGGCGGACAATC
Found at i:8134160 original size:28 final size:28
Alignment explanation
Indices: 8134091--8134177 Score: 95
Period size: 28 Copynumber: 3.1 Consensus size: 28
8134081 CGAGATGCAA
* * * *
8134091 AAGTGCAAGTCAAAGTGGCAGACAATCCA
1 AAGTGAAAGCCAAAGTGGCGGACAAT-CT
*
8134120 AAGT-ACAAGCCAAGGTGGCGGACAATCT
1 AAGTGA-AAGCCAAAGTGGCGGACAATCT
*
8134148 AAGTGAAAGCCAAAGTGGCGGACAGTCT
1 AAGTGAAAGCCAAAGTGGCGGACAATCT
8134176 AA
1 AA
8134178 CTGCGAACTG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 27 0.55
29 22 0.45
ACGTcount: A:0.39, C:0.20, G:0.28, T:0.14
Consensus pattern (28 bp):
AAGTGAAAGCCAAAGTGGCGGACAATCT
Found at i:8137619 original size:51 final size:52
Alignment explanation
Indices: 8137536--8137635 Score: 148
Period size: 51 Copynumber: 1.9 Consensus size: 52
8137526 GGTACTTCTG
* * *
8137536 AAAACCAACATAATCATTTTAGTTATCAATAAATGTCATCTTCAAACAACTA
1 AAAACCAACATAATCACTTTAGTTATCAATAAATATCATCATCAAACAACTA
* *
8137588 AAAACCAACATAATC-CTTTAGTTATTAATAAATATCATCATCTAACAA
1 AAAACCAACATAATCACTTTAGTTATCAATAAATATCATCATCAAACAA
8137636 TCCAATCAAG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
51 28 0.65
52 15 0.35
ACGTcount: A:0.47, C:0.19, G:0.03, T:0.31
Consensus pattern (52 bp):
AAAACCAACATAATCACTTTAGTTATCAATAAATATCATCATCAAACAACTA
Found at i:8141194 original size:25 final size:25
Alignment explanation
Indices: 8141166--8141218 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 25
8141156 ATTTTTGAAT
*
8141166 TTGATAATGATTTTGTG-TTTTGTTA
1 TTGATAAT-AGTTTGTGATTTTGTTA
*
8141191 TTGATGATAGTTTGTGATTTTTGTTA
1 TTGATAATAGTTTGTGA-TTTTGTTA
8141217 TT
1 TT
8141219 TGTTGTTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 7 0.29
25 7 0.29
26 10 0.42
ACGTcount: A:0.19, C:0.00, G:0.21, T:0.60
Consensus pattern (25 bp):
TTGATAATAGTTTGTGATTTTGTTA
Found at i:8141968 original size:43 final size:44
Alignment explanation
Indices: 8141862--8141968 Score: 130
Period size: 44 Copynumber: 2.5 Consensus size: 44
8141852 ATGTGTTGTC
*
8141862 ATGTAAGACCACGTCTGGGACGTTGGCATCGACTTGTGATTTAC
1 ATGTAAGACCACGTCTGGGACGTTGGCATCGACTTGTGATTTAA
* **
8141906 GTGTAAGACCTTGTCTGGGACAG-TGGCATCGA-TATGTGA-TTAA
1 ATGTAAGACCACGTCTGGGAC-GTTGGCATCGACT-TGTGATTTAA
*
8141949 ATGTAAGACCACATCTGGGA
1 ATGTAAGACCACGTCTGGGA
8141969 TGATGGCGTT
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
43 20 0.38
44 32 0.60
45 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (44 bp):
ATGTAAGACCACGTCTGGGACGTTGGCATCGACTTGTGATTTAA
Found at i:8149452 original size:98 final size:97
Alignment explanation
Indices: 8149329--8149649 Score: 436
Period size: 98 Copynumber: 3.3 Consensus size: 97
8149319 AACAACTAGC
* *
8149329 TTATTTGATTTTTT-CTTAAAAACCCTAAATACTAAACCCCAATCTAATTTTTTTAAAATTTATA
1 TTATTTGATTTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTTAAAATTTATA
8149393 ATTAATTTACTCAAGTAACCTTAAACCCTAAT
66 ATTAATTTACTCAAGTAACCTTAAACCCTAAT
* ** *
8149425 TTATTTGATTTTTTTCCTCAAAAACCCTAAACACTAAACCCTAATCT-ATTTTTAAAAAAAATTA
1 TTATTTGA-TTTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTT-TTAAAATTTA
8149489 TAATTAATTTACTCAAGTAACCTTAAACCCTAAT
64 TAATTAATTTACTCAAGTAACCTTAAACCCTAAT
* *
8149523 TTATTTGATTTTTTCCTTAAAAACCATAAACATTAAACCCTAATCTAA-TTTTTTAAAATTTATA
1 TTATTTGATTTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTTAAAATTTATA
* * * * * *
8149587 ATTAATTTAATTAAGAAACCCTAAATCCTAAACCC
66 ATTAATTTACTCAAGTAACCTTAAACCCT-AA--T
8149622 TTATTT-ATTTTTTCCTT-AAAACCCTAAA
1 TTATTTGATTTTTTCCTTAAAAACCCTAAA
8149650 ATCTAAAAAC
Statistics
Matches: 199, Mismatches: 19, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
96 41 0.21
97 63 0.32
98 89 0.45
99 6 0.03
ACGTcount: A:0.40, C:0.18, G:0.02, T:0.40
Consensus pattern (97 bp):
TTATTTGATTTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTTAAAATTTATA
ATTAATTTACTCAAGTAACCTTAAACCCTAAT
Found at i:8155722 original size:22 final size:22
Alignment explanation
Indices: 8155694--8155739 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
8155684 GATTAAGTAA
8155694 ATCACTAGGATCAACTCCCATT
1 ATCACTAGGATCAACTCCCATT
8155716 ATCACTAGGATCAACTCCCATT
1 ATCACTAGGATCAACTCCCATT
8155738 AT
1 AT
8155740 ATGATTGTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.33, C:0.30, G:0.09, T:0.28
Consensus pattern (22 bp):
ATCACTAGGATCAACTCCCATT
Found at i:8159199 original size:8 final size:9
Alignment explanation
Indices: 8159176--8159209 Score: 52
Period size: 8 Copynumber: 3.8 Consensus size: 9
8159166 ACTGGAAAAC
8159176 ATGTATGTGA
1 ATGTATGT-A
8159186 ATGTATGT-
1 ATGTATGTA
8159194 ATGTATGTA
1 ATGTATGTA
8159203 ATGTATG
1 ATGTATG
8159210 CTGCCCTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 8 0.35
9 7 0.30
10 8 0.35
ACGTcount: A:0.29, C:0.00, G:0.26, T:0.44
Consensus pattern (9 bp):
ATGTATGTA
Found at i:8160844 original size:24 final size:24
Alignment explanation
Indices: 8160804--8160857 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 24
8160794 AACTTTTCTA
8160804 TCAAAGTTATCAATAAA-TTTGAC
1 TCAAAGTTATCAATAAACTTTGAC
*
8160827 TTCAAA-TTTTCAAGTAAACTTTTGAC
1 -TCAAAGTTATCAA-TAAAC-TTTGAC
8160853 TCAAA
1 TCAAA
8160858 ATTTGTGTGC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
23 6 0.23
24 9 0.35
25 5 0.19
26 6 0.23
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (24 bp):
TCAAAGTTATCAATAAACTTTGAC
Found at i:8161647 original size:16 final size:15
Alignment explanation
Indices: 8161621--8161668 Score: 62
Period size: 15 Copynumber: 3.1 Consensus size: 15
8161611 CCATATGACA
8161621 TATTTTT-ATATTATT
1 TATTTTTAATATT-TT
8161636 TATTTTTAATATTTT
1 TATTTTTAATATTTT
8161651 TATTTTGTAATTATTTT
1 TATTTT-TAA-TATTTT
8161668 T
1 T
8161669 TAACTTATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
15 15 0.50
16 8 0.27
17 7 0.23
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (15 bp):
TATTTTTAATATTTT
Found at i:8162279 original size:16 final size:17
Alignment explanation
Indices: 8162258--8162295 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
8162248 TTTATAGATG
*
8162258 AAAAAAAAT-GAAAAAT
1 AAAAAAAATAAAAAAAT
8162274 -AAAAAAATAAAAAAAT
1 AAAAAAAATAAAAAAAT
8162290 AAAAAA
1 AAAAAA
8162296 TTGATTCTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 8 0.42
16 6 0.32
17 5 0.26
ACGTcount: A:0.87, C:0.00, G:0.03, T:0.11
Consensus pattern (17 bp):
AAAAAAAATAAAAAAAT
Found at i:8162296 original size:7 final size:8
Alignment explanation
Indices: 8162259--8162295 Score: 58
Period size: 8 Copynumber: 4.8 Consensus size: 8
8162249 TTATAGATGA
8162259 AAAAAAAT
1 AAAAAAAT
*
8162267 -GAAAAAT
1 AAAAAAAT
8162274 AAAAAAAT
1 AAAAAAAT
8162282 AAAAAAAT
1 AAAAAAAT
8162290 AAAAAA
1 AAAAAA
8162296 TTGATTCTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 6 0.23
8 20 0.77
ACGTcount: A:0.86, C:0.00, G:0.03, T:0.11
Consensus pattern (8 bp):
AAAAAAAT
Found at i:8162749 original size:20 final size:19
Alignment explanation
Indices: 8162717--8162754 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
8162707 TTTTTTTTAA
8162717 AAAAAATTCTTAACAATAAT
1 AAAAAATTCTTAA-AATAAT
8162737 AAAAAA-TCTTTAAAATAA
1 AAAAAATTC-TTAAAATAA
8162755 ATATAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (19 bp):
AAAAAATTCTTAAAATAAT
Found at i:8171730 original size:19 final size:19
Alignment explanation
Indices: 8171702--8171745 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
8171692 TAATTATTAT
8171702 ATTTAAATATT-TAAATAAA
1 ATTTAAATATTCT-AATAAA
* *
8171721 ATTTATATATTCTAATTAA
1 ATTTAAATATTCTAATAAA
8171740 ATTTAA
1 ATTTAA
8171746 TAAATAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 20 0.95
20 1 0.05
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (19 bp):
ATTTAAATATTCTAATAAA
Found at i:8186241 original size:77 final size:77
Alignment explanation
Indices: 8186110--8186263 Score: 281
Period size: 77 Copynumber: 2.0 Consensus size: 77
8186100 TTCAGGATCG
*
8186110 ACTATTTTCAAATTTAACTGATTAATTGACTGATATAAGTCTTAATGAAACTAATTGAACTAACT
1 ACTATTTTCAAATTTAACTGATTAATTGACTAATATAAGTCTTAATGAAACTAATTGAACTAACT
8186175 TAATTTTTTTTT
66 TAATTTTTTTTT
* *
8186187 ACTATTTTTAAATTTAACTGATTAATTGACTAATATAAGTCTTAATGAATCTAATTGAACTAACT
1 ACTATTTTCAAATTTAACTGATTAATTGACTAATATAAGTCTTAATGAAACTAATTGAACTAACT
8186252 TAATTTTTTTTT
66 TAATTTTTTTTT
8186264 TCGATTTCGT
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
77 74 1.00
ACGTcount: A:0.36, C:0.10, G:0.07, T:0.47
Consensus pattern (77 bp):
ACTATTTTCAAATTTAACTGATTAATTGACTAATATAAGTCTTAATGAAACTAATTGAACTAACT
TAATTTTTTTTT
Found at i:8188731 original size:131 final size:132
Alignment explanation
Indices: 8188499--8188912 Score: 609
Period size: 132 Copynumber: 3.1 Consensus size: 132
8188489 AATTGGTAAT
** * * *
8188499 TTCAACCTACTCCACTGCAACTTCAGGGAGATA-ATGCTAGTGGCTTAAATATGCTTCCCTACTA
1 TTCAACCTACTCCACTGCTGC-TCAGGGAGATAGA-ACTGGTGGCTTAAATCTGCTTCCCTACTA
* * *
8188563 CCTCGAGAAGATAAGACTT-GTCGTCTTTGATCTGCTCCAGTACTGCTTAGGGAGACAGGATATA
64 CCTCGAGAAGATAAGA-TTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTA
*
8188627 CAATT
128 CAATC
* *
8188632 TTCAACCTACTCCACTACTGCTCAGGGAGATAGAACTGGTGGCTTAAATCTGCTT-CCTACTATC
1 TTCAACCTACTCCACTGCTGCTCAGGGAGATAGAACTGGTGGCTTAAATCTGCTTCCCTACTACC
* * *
8188696 TCGAGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGACAGAATCTACAA
66 TCGAGAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAA
8188761 TC
131 TC
* * *
8188763 TTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTGTTGGCTTAAATCTGCTTCCCTACTACC
1 TTCAACCTACTCCACTGCTGCTCAGGGAGATAGAACTGGTGGCTTAAATCTGCTTCCCTACTACC
* *
8188828 TTGGGAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAA
66 TCGAGAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAA
8188893 TC
131 TC
8188895 TTCAACCTACTCCACTGC
1 TTCAACCTACTCCACTGC
8188913 AAACTTAGAG
Statistics
Matches: 254, Mismatches: 24, Indels: 7
0.89 0.08 0.02
Matches are distributed among these distances:
130 2 0.01
131 116 0.46
132 117 0.46
133 19 0.07
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (132 bp):
TTCAACCTACTCCACTGCTGCTCAGGGAGATAGAACTGGTGGCTTAAATCTGCTTCCCTACTACC
TCGAGAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAA
TC
Found at i:8188882 original size:132 final size:131
Alignment explanation
Indices: 8188499--8188912 Score: 598
Period size: 131 Copynumber: 3.1 Consensus size: 131
8188489 AATTGGTAAT
** * * * *
8188499 TTCAACCTACTCCACTGCAACTTCAGGGAGATAATGCTAGTGGCTTAAATATGCTTCCCTACTAC
1 TTCAACCTACTCCACTGCTGC-TCAGGGAGAT-AGGATTGTGGCTTAAATCTGCTTCCCTACTAC
* * *
8188564 CTCGAGAAGATAAGACTT-GTCGTCTTTGATCTGCTCCAGTACTGCTTAGGGAGACAGGATATAC
64 CTCGAGAAGATAAGA-TTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTAC
*
8188628 AATT
128 AATC
* * * *
8188632 TTCAACCTACTCCACTACTGCTCAGGGAGATAGAACTGGTGGCTTAAATCTGCTT-CCTACTATC
1 TTCAACCTACTCCACTGCTGCTCAGGGAGATAGGA-TTGTGGCTTAAATCTGCTTCCCTACTACC
* * *
8188696 TCGAGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGACAGAATCTACAA
65 TCGAGAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAA
8188761 TC
130 TC
8188763 TTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTGTTGGCTTAAATCTGCTTCCCTACTACC
1 TTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTG-TGGCTTAAATCTGCTTCCCTACTACC
* *
8188828 TTGGGAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAA
65 TCGAGAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAA
8188893 TC
130 TC
8188895 TTCAACCTACTCCACTGC
1 TTCAACCTACTCCACTGC
8188913 AAACTTAGAG
Statistics
Matches: 252, Mismatches: 25, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
130 4 0.02
131 115 0.46
132 115 0.46
133 18 0.07
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (131 bp):
TTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTGTGGCTTAAATCTGCTTCCCTACTACCT
CGAGAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAAT
C
Found at i:8189032 original size:89 final size:89
Alignment explanation
Indices: 8188904--8189285 Score: 372
Period size: 89 Copynumber: 4.3 Consensus size: 89
8188894 CTTCAACCTA
* * * * * * *
8188904 CTCCACTGCAAACT-TAGAGAGGTAAGGTTGGAGTTTTCGATCTGCTTCACTGCCAGTATAGGAA
1 CTCCGCTGCAAACTCAAG-GAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGCCAGTACAGGAA
* ** *
8188968 GACAAGATCTGCTGTTTTCAGTTTG
65 GACAAGATCTGCTATCGTCAGTCTG
* * * * ** ** * *
8188993 CTTCGCTGTAAACTCATGGAGGCAAGGCTAGTGTCTTCGATCTATTTTGCTGCCAATACAAGAAG
1 CTCCGCTGCAAACTCAAGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGCCAGTACAGGAAG
* *
8189058 ACAAGATCTGCTATCTTCAGTTTG
66 ACAAGATCTGCTATCGTCAGTCTG
* * * * *
8189082 CACCTCTGCAAACTCAAGGAGACAAGGCTGGTGTCTTCGATCTGCTTCACTACCAGTATAGGAAG
1 CTCCGCTGCAAACTCAAGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGCCAGTACAGGAAG
*
8189147 ACAAGATCTGCTATCGTCAATCTG
66 ACAAGATCTGCTATCGTCAGTCTG
* * * * **
8189171 CTCCGCTGCAAACTC-AGAGAGGCAAGACTGGTGTCTTTGATCTGATTCATTGTTAGTACAGGAA
1 CTCCGCTGCAAACTCAAG-GAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGCCAGTACAGGAA
* * *
8189235 GATAAAATCTACTATCGTCAGTCTG
65 GACAAGATCTGCTATCGTCAGTCTG
* *
8189260 CTTCGTTGCAAACTCAAGGAGGCAAG
1 CTCCGCTGCAAACTCAAGGAGGCAAG
8189286 ACTTGTAACT
Statistics
Matches: 236, Mismatches: 54, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
88 2 0.01
89 231 0.98
90 3 0.01
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (89 bp):
CTCCGCTGCAAACTCAAGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGCCAGTACAGGAAG
ACAAGATCTGCTATCGTCAGTCTG
Found at i:8189272 original size:178 final size:177
Alignment explanation
Indices: 8188939--8189285 Score: 414
Period size: 178 Copynumber: 1.9 Consensus size: 177
8188929 GGTTGGAGTT
* * ** * * * *
8188939 TTCGATCTGCTTCACTGCCAGTATAGGAAGACAAGATCTGCTGTTTTCAGTTTGCTTCGCTGTAA
1 TTCGATCTGCTTCACTACCAGTATAGGAAGACAAGATCTGCTATCGTCAATCTGCTCCGCTGCAA
* * *
8189004 ACTCATGGAGGCAAGGCTAGTGTCTTCGATCTATTTTGCTGCCAATACAAGAAGACAAGATCTGC
66 ACTCATGGAGGCAAGACTAGTGTCTTCGATCTATTTTGCT-CCAATACAAGAAGACAAAATCTAC
* *
8189069 TATCTTCAGTTTGCACCTCTGCAAACTCAAGGAGACAAGGCTGGTGTC
130 TATCGTCAGTCTGCACCTCTGCAAACTCAAGGAGACAAGGCTGGTGTC
8189117 TTCGATCTGCTTCACTACCAGTATAGGAAGACAAGATCTGCTATCGTCAATCTGCTCCGCTGCAA
1 TTCGATCTGCTTCACTACCAGTATAGGAAGACAAGATCTGCTATCGTCAATCTGCTCCGCTGCAA
* * * * * *
8189182 ACTCA-GAGAGGCAAGACTGGTGTCTTTGATCTGATTCATTG-T-TAGTACAGGAAGATAAAATC
66 ACTCATG-GAGGCAAGACTAGTGTCTTCGATCT-ATT--TTGCTCCAATACAAGAAGACAAAATC
* * *
8189244 TACTATCGTCAGTCTGCTTCGT-TGCAAACTCAAGGAGGCAAG
127 TACTATCGTCAGTCTGC-ACCTCTGCAAACTCAAGGAGACAAG
8189286 ACTTGTAACT
Statistics
Matches: 142, Mismatches: 22, Indels: 10
0.82 0.13 0.06
Matches are distributed among these distances:
177 1 0.01
178 132 0.93
179 5 0.04
180 1 0.01
181 3 0.02
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (177 bp):
TTCGATCTGCTTCACTACCAGTATAGGAAGACAAGATCTGCTATCGTCAATCTGCTCCGCTGCAA
ACTCATGGAGGCAAGACTAGTGTCTTCGATCTATTTTGCTCCAATACAAGAAGACAAAATCTACT
ATCGTCAGTCTGCACCTCTGCAAACTCAAGGAGACAAGGCTGGTGTC
Found at i:8189405 original size:45 final size:45
Alignment explanation
Indices: 8189350--8189476 Score: 132
Period size: 45 Copynumber: 2.8 Consensus size: 45
8189340 TTAATCTACT
* * *
8189350 CCACTACAACTTCAGGGAGATAAAATTCTCCATCTTCAGTCTTCC
1 CCACTGCAACTTTAGGGAGATAAAATTCTCCATCTTCAGTCTGCC
* * * *
8189395 CCACTGCAACTTTAGGGGGATAAGACTTGCT--TTCTTCAGTCTGCT
1 CCACTGCAACTTTAGGGAGATAA-AATT-CTCCATCTTCAGTCTGCC
* * *
8189440 CTACTGCAACTTTAGGGAGATAAGATTCACCATCTTC
1 CCACTGCAACTTTAGGGAGATAAAATTCTCCATCTTC
8189477 TTCAATCCAT
Statistics
Matches: 65, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
43 1 0.02
44 2 0.03
45 57 0.88
46 3 0.05
47 2 0.03
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.31
Consensus pattern (45 bp):
CCACTGCAACTTTAGGGAGATAAAATTCTCCATCTTCAGTCTGCC
Found at i:8189846 original size:24 final size:24
Alignment explanation
Indices: 8189793--8189848 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
8189783 CAAATTGCCC
*
8189793 CCACTATAATCTTCAAGGTTCAAT
1 CCACTGTAATCTTCAAGGTTCAAT
8189817 CCACTGTAATCTTCAAGGTTCAAT
1 CCACTGTAATCTTCAAGGTTCAAT
*
8189841 CTACTGTA
1 CCACTGTA
8189849 CTTTTAGGAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.30, C:0.25, G:0.11, T:0.34
Consensus pattern (24 bp):
CCACTGTAATCTTCAAGGTTCAAT
Found at i:8191751 original size:23 final size:22
Alignment explanation
Indices: 8191727--8191769 Score: 50
Period size: 23 Copynumber: 1.9 Consensus size: 22
8191717 TTCTTTTCCT
* *
8191727 TTCCTTTTTCCTTCTATTTTTCT
1 TTCCTTTTTCCATC-ATTTTCCT
*
8191750 TTTCTTTTTCCATCATTTTC
1 TTCCTTTTTCCATCATTTTC
8191770 ATTTTTTTGA
Statistics
Matches: 17, Mismatches: 3, Indels: 1
0.81 0.14 0.05
Matches are distributed among these distances:
22 5 0.29
23 12 0.71
ACGTcount: A:0.07, C:0.26, G:0.00, T:0.67
Consensus pattern (22 bp):
TTCCTTTTTCCATCATTTTCCT
Found at i:8194812 original size:19 final size:20
Alignment explanation
Indices: 8194788--8194834 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
8194778 TGGTGGACTT
* *
8194788 TAATGCATATG-ATGTAATG
1 TAATGCAAATGCATGAAATG
8194807 TAATGCAAATGCATGAAATG
1 TAATGCAAATGCATGAAATG
8194827 -AATGCAAA
1 TAATGCAAA
8194835 AAAGAGACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.45, C:0.09, G:0.19, T:0.28
Consensus pattern (20 bp):
TAATGCAAATGCATGAAATG
Found at i:8209803 original size:2 final size:2
Alignment explanation
Indices: 8209796--8209826 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8209786 GGCTTCTTCT
8209796 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
8209827 TTTTTGCTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:8215680 original size:27 final size:23
Alignment explanation
Indices: 8215599--8215657 Score: 91
Period size: 23 Copynumber: 2.6 Consensus size: 23
8215589 CAGCTCGTAT
* **
8215599 GAGCTTACCGTTTCAGCTCTACG
1 GAGCTTACCGTTTCAGCTCAAAA
8215622 GAGCTTACCGTTTCAGCTCAAAA
1 GAGCTTACCGTTTCAGCTCAAAA
8215645 GAGCTTACCGTTT
1 GAGCTTACCGTTT
8215658 ATTCAGCTCG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (23 bp):
GAGCTTACCGTTTCAGCTCAAAA
Found at i:8215948 original size:25 final size:25
Alignment explanation
Indices: 8215920--8215973 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
8215910 GGAAAAAAAT
* * **
8215920 TGATATAAATGTTATATGATTTACA
1 TGATATAAAAGTTACATGAAATACA
*
8215945 TGATTTAAAAGTTACATGAAATACA
1 TGATATAAAAGTTACATGAAATACA
8215970 TGAT
1 TGAT
8215974 TTACATGGAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.43, C:0.06, G:0.13, T:0.39
Consensus pattern (25 bp):
TGATATAAAAGTTACATGAAATACA
Found at i:8222628 original size:18 final size:18
Alignment explanation
Indices: 8222604--8222651 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
8222594 AAAAATTACG
8222604 AAAAAAAAGAGTACGAAGT
1 AAAAAAAA-AGTACGAAGT
* *
8222623 AAAAAAAAATTTCGAAGT
1 AAAAAAAAAGTACGAAGT
8222641 ATAAAAAAAAG
1 A-AAAAAAAAG
8222652 AAGTGTAAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 9 0.36
19 16 0.64
ACGTcount: A:0.67, C:0.04, G:0.15, T:0.15
Consensus pattern (18 bp):
AAAAAAAAAGTACGAAGT
Done.