Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 28 of 207
Found at i:8222629 original size:20 final size:20
Alignment explanation
Indices: 8222604--8222652 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
8222594 AAAAATTACG
8222604 AAAAAAAAGAGTACGAAG-T
1 AAAAAAAAGAGTACGAAGTT
* *
8222623 AAAAAAAA-ATTTCGAAGTAT
1 AAAAAAAAGAGTACGAAGT-T
8222643 AAAAAAAAGA
1 AAAAAAAAGA
8222653 AGTGTAAAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 7 0.28
19 8 0.32
20 9 0.36
21 1 0.04
ACGTcount: A:0.67, C:0.04, G:0.14, T:0.14
Consensus pattern (20 bp):
AAAAAAAAGAGTACGAAGTT
Found at i:8223767 original size:12 final size:12
Alignment explanation
Indices: 8223750--8223774 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8223740 ATGAGAGAGG
8223750 GTTTGAAAAAGA
1 GTTTGAAAAAGA
8223762 GTTTGAAAAAGA
1 GTTTGAAAAAGA
8223774 G
1 G
8223775 ATGAGTGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.28, T:0.24
Consensus pattern (12 bp):
GTTTGAAAAAGA
Found at i:8236466 original size:6 final size:6
Alignment explanation
Indices: 8236455--8236480 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
8236445 AGAGGTAGAA
8236455 GATGAG GATGAG GATGAG GATGAG GA
1 GATGAG GATGAG GATGAG GATGAG GA
8236481 GGGAAAGAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.50, T:0.15
Consensus pattern (6 bp):
GATGAG
Found at i:8256094 original size:7 final size:7
Alignment explanation
Indices: 8256082--8256124 Score: 50
Period size: 7 Copynumber: 5.7 Consensus size: 7
8256072 ATTAAAAATC
8256082 ATTTTTT
1 ATTTTTT
8256089 ATTTTTT
1 ATTTTTT
8256096 ATTTTCTAT
1 ATTTT-T-T
*
8256105 ATATTTT
1 ATTTTTT
8256112 ATTATTTT
1 ATT-TTTT
8256120 ATTTT
1 ATTTT
8256125 ATTTTTTTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
7 17 0.55
8 9 0.29
9 5 0.16
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (7 bp):
ATTTTTT
Found at i:8256562 original size:22 final size:22
Alignment explanation
Indices: 8256504--8256564 Score: 68
Period size: 27 Copynumber: 2.5 Consensus size: 22
8256494 GAAATTGATT
8256504 ATTCGTTAAACTTGCTTGGATA
1 ATTCGTTAAACTTGCTTGGATA
*
8256526 ATTTATGCTCATAAACTTGCTTGGATA
1 A-TT-CG-T--TAAACTTGCTTGGATA
8256553 ATTCGTTAAACT
1 ATTCGTTAAACT
8256565 ACTTCGCTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
22 7 0.22
23 2 0.06
24 2 0.06
25 2 0.06
26 2 0.06
27 17 0.53
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (22 bp):
ATTCGTTAAACTTGCTTGGATA
Found at i:8256990 original size:11 final size:11
Alignment explanation
Indices: 8256932--8256987 Score: 67
Period size: 11 Copynumber: 4.9 Consensus size: 11
8256922 ATTAATCATT
*
8256932 TCTCAATTATTC
1 TCTCAATT-TCC
*
8256944 TCCCAATTTCC
1 TCTCAATTTCC
*
8256955 TCTCAATTTGC
1 TCTCAATTTCC
8256966 TCTCAATTTCC
1 TCTCAATTTCC
8256977 TCTCAAATTTC
1 TCTC-AATTTC
8256988 TCTTAAATCC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
11 25 0.66
12 13 0.34
ACGTcount: A:0.21, C:0.32, G:0.02, T:0.45
Consensus pattern (11 bp):
TCTCAATTTCC
Found at i:8260619 original size:7 final size:7
Alignment explanation
Indices: 8260609--8260653 Score: 54
Period size: 7 Copynumber: 6.3 Consensus size: 7
8260599 TTTAACCTTT
8260609 AACCCTA
1 AACCCTA
8260616 AACCCTAA
1 AACCCT-A
*
8260624 AACCTTA
1 AACCCTA
8260631 AACCCTA
1 AACCCTA
**
8260638 AACTTTA
1 AACCCTA
8260645 AACCCTA
1 AACCCTA
8260652 AA
1 AA
8260654 AGTAGTGAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
7 25 0.81
8 6 0.19
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.20
Consensus pattern (7 bp):
AACCCTA
Found at i:8262484 original size:20 final size:23
Alignment explanation
Indices: 8262456--8262505 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 23
8262446 GTTTTTTACT
*
8262456 AAAATAATA-CAAAAGAA-ATA-
1 AAAAAAATACCAAAAGAATATAC
*
8262476 AAAAAAATACCAAAATAATATAC
1 AAAAAAATACCAAAAGAATATAC
8262499 AAAAAAA
1 AAAAAAA
8262506 ACTTATTTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 8 0.32
21 7 0.28
22 3 0.12
23 7 0.28
ACGTcount: A:0.76, C:0.08, G:0.02, T:0.14
Consensus pattern (23 bp):
AAAAAAATACCAAAAGAATATAC
Found at i:8262600 original size:27 final size:27
Alignment explanation
Indices: 8262560--8262622 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
8262550 GGTAATGGAA
* *
8262560 TGGCGGCACCGGTGGTGCCTTTCTCAT
1 TGGCGGCACCGGTGGTGCCATTCCCAT
* *
8262587 TGGCGGCACTGGTGGTGTCATTCCCAT
1 TGGCGGCACCGGTGGTGCCATTCCCAT
8262614 TGGCGGCAC
1 TGGCGGCAC
8262623 AGGACTAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.29, G:0.35, T:0.27
Consensus pattern (27 bp):
TGGCGGCACCGGTGGTGCCATTCCCAT
Found at i:8264469 original size:27 final size:27
Alignment explanation
Indices: 8264420--8264482 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
8264410 TTTTAGTCCT
* *
8264420 GTGCCGCCAATGGGAATGACACCACCA
1 GTGCCGCCAATGAGAAAGACACCACCA
* * *
8264447 GTGTCGCCAATGAGAAAGGCACCACCG
1 GTGCCGCCAATGAGAAAGACACCACCA
8264474 GTGCCGCCA
1 GTGCCGCCA
8264483 TTCCATTACC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.27, C:0.33, G:0.29, T:0.11
Consensus pattern (27 bp):
GTGCCGCCAATGAGAAAGACACCACCA
Found at i:8266149 original size:20 final size:20
Alignment explanation
Indices: 8266126--8266163 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8266116 ATTTATAGAC
8266126 ATACATATATACATATATAT
1 ATACATATATACATATATAT
* *
8266146 ATACATATTTACGTATAT
1 ATACATATATACATATAT
8266164 CCTTGTTGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.11, G:0.03, T:0.42
Consensus pattern (20 bp):
ATACATATATACATATATAT
Found at i:8266153 original size:12 final size:12
Alignment explanation
Indices: 8266119--8266153 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
8266109 TTTTACAATT
* *
8266119 TATAGACATACA
1 TATATACATATA
8266131 TATATACATATA
1 TATATACATATA
8266143 TATATACATAT
1 TATATACATAT
8266154 TTACGTATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.49, C:0.11, G:0.03, T:0.37
Consensus pattern (12 bp):
TATATACATATA
Found at i:8266785 original size:43 final size:42
Alignment explanation
Indices: 8266623--8266784 Score: 166
Period size: 43 Copynumber: 3.7 Consensus size: 42
8266613 GTCGCTAACA
* * * *
8266623 TTAGCGGCGTTTTTAGAAATAAACGCCGCTAAAGAACAGGACCT
1 TTAGCGGCGCTTTTA-TAA-AAACGCCACTAAAGAACATGACCT
* * *
8266667 TTAGCGGCGCCTTCATAAAGAAGGCCACTAAAGAACATGACCT
1 TTAGCGGCGCTTTTATAAA-AACGCCACTAAAGAACATGACCT
*
8266710 TTAGCGGCGCTTTTATCACAAACG-CAGCTAAA-AAGCATGACCT
1 TTAGCGGCGCTTTTAT-AAAAACGCCA-CTAAAGAA-CATGACCT
*
8266753 TTAGCGACGCTTTTATAGAAAACGCCACTAAA
1 TTAGCGGCGCTTTTATA-AAAACGCCACTAAA
8266785 AGCATTTTTA
Statistics
Matches: 99, Mismatches: 13, Indels: 13
0.79 0.10 0.10
Matches are distributed among these distances:
42 6 0.06
43 77 0.78
44 16 0.16
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (42 bp):
TTAGCGGCGCTTTTATAAAAACGCCACTAAAGAACATGACCT
Found at i:8269426 original size:22 final size:22
Alignment explanation
Indices: 8269398--8269443 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
8269388 ATAGTGCCCG
8269398 GCTCCAGATCCATAAGAACAGC
1 GCTCCAGATCCATAAGAACAGC
*
8269420 GCTCCAGATCCATGAGAACAGC
1 GCTCCAGATCCATAAGAACAGC
8269442 GC
1 GC
8269444 GTGGGACATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.33, G:0.22, T:0.13
Consensus pattern (22 bp):
GCTCCAGATCCATAAGAACAGC
Found at i:8270588 original size:7 final size:8
Alignment explanation
Indices: 8270568--8270596 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
8270558 CAAAACTGAC
8270568 CCCTAAAT
1 CCCTAAAT
8270576 CCCTAAA-
1 CCCTAAAT
8270583 CCCTAAAT
1 CCCTAAAT
8270591 CCCTAA
1 CCCTAA
8270597 CTATTAACCC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.38, C:0.41, G:0.00, T:0.21
Consensus pattern (8 bp):
CCCTAAAT
Found at i:8270588 original size:15 final size:15
Alignment explanation
Indices: 8270568--8270596 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8270558 CAAAACTGAC
8270568 CCCTAAATCCCTAAA
1 CCCTAAATCCCTAAA
8270583 CCCTAAATCCCTAA
1 CCCTAAATCCCTAA
8270597 CTATTAACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.41, G:0.00, T:0.21
Consensus pattern (15 bp):
CCCTAAATCCCTAAA
Found at i:8270692 original size:311 final size:310
Alignment explanation
Indices: 8270161--8270786 Score: 850
Period size: 311 Copynumber: 2.0 Consensus size: 310
8270151 TCAATATATT
*
8270161 AAATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAAAAAGCTAA
1 AAATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAAAAAACTAA
* * * * *
8270226 TTAATCTAAACCCAAAACCCTAACCTGACCCCTAGGGCCTAAACTCTAAATCCTTAACTCTTAAC
66 TTAATCTAAACCC-AAA--C-AACCTGACCCCTAAGCCCTAAACCCTAAATCCCTAACTATTAAC
* * * *
8270291 CTCAAAATGTCTAACCCCTAAACCCTTAACCCCTAATTAACCTCTAAACCTTAAATCCCAACCCT
127 CCCAAAATGTCTAACCCCTAAACCCCTAAACCC-AATTAACCCCTAAACCTTAAATCCCAACCCT
*
8270356 TAAACCATAATCCCCAATCCATAATCCCTAAATCCAAACTCCATAAACCTTAAAATAGTAACTCC
191 TAAACCATAATCCCCAATACATAATCCCTAAATCCAAACTCCATAAACCTTAAAATAGTAACTCC
** *
8270421 TAAACCGACCTTAAATTTTAAATTAATCATATACCCTAAACTAAAAACCCTAAAC
256 TAAACCGACCTTAAATCGTAAATTAATCATATACCCTAAACCAAAAACCCTAAAC
*
8270476 AAATTTATTGTTATCTCTTTTACAATTGTATATATAAGAACATATTTAAAATATAAATTAAAAAA
1 AAATTTATTATTATCTCTTTTACAA---T-TATATAAGAACATATTTAAAATATAAATT-AAAAA
*
8270541 ACTAATTAATCTAAACCC-AA-AA-CTGACCCCTAAATCCCTAAACCCTAAATCCCTAACTATTA
61 ACTAATTAATCTAAACCCAAACAACCTGACCCCT-AAGCCCTAAACCCTAAATCCCTAACTATTA
* * *
8270603 ACCCCATAATGTCTAACCCCTGAACCCCTAAACCC-A-TAACCCCTAAACCTTAAATTCCAACCC
125 ACCCCAAAATGTCTAACCCCTAAACCCCTAAACCCAATTAACCCCTAAACCTTAAATCCCAACCC
* * * * * *
8270666 TTAAACCATAA-CCCCTGATACATAATCCTTAAATCCATACTCCCTCAACCTTCAAATAGTAACT
190 TTAAACCATAATCCCC-AATACATAATCCCTAAATCCAAACTCCATAAACCTTAAAATAGTAACT
* * *
8270730 CCTAAACTGGCCTTAAATCGTAAATTAATCATATACTCTAAACCAAAAACCCTAAAC
254 CCTAAACCGACCTTAAATCGTAAATTAATCATATACCCTAAACCAAAAACCCTAAAC
8270787 TATAGTGATA
Statistics
Matches: 276, Mismatches: 28, Indels: 18
0.86 0.09 0.06
Matches are distributed among these distances:
310 4 0.01
311 128 0.46
312 1 0.00
313 9 0.03
314 56 0.20
315 24 0.09
318 3 0.01
319 29 0.11
320 22 0.08
ACGTcount: A:0.42, C:0.27, G:0.03, T:0.28
Consensus pattern (310 bp):
AAATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAAAAAACTAA
TTAATCTAAACCCAAACAACCTGACCCCTAAGCCCTAAACCCTAAATCCCTAACTATTAACCCCA
AAATGTCTAACCCCTAAACCCCTAAACCCAATTAACCCCTAAACCTTAAATCCCAACCCTTAAAC
CATAATCCCCAATACATAATCCCTAAATCCAAACTCCATAAACCTTAAAATAGTAACTCCTAAAC
CGACCTTAAATCGTAAATTAATCATATACCCTAAACCAAAAACCCTAAAC
Found at i:8271302 original size:41 final size:41
Alignment explanation
Indices: 8271231--8271467 Score: 268
Period size: 41 Copynumber: 5.8 Consensus size: 41
8271221 TAAAATTTTT
* * *
8271231 TTAGCGGCGCTTTT-CTAAAACGCCGCTAAAGCCCCTACCA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCACCTAGCA
* * * *
8271271 TTAGCTGCGCTTTTCCAAAAACGCCACTAAAGCCCCTACCA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCACCTAGCA
* *
8271312 TTAGCGGCGCTTTTTCCAAAAACGCCACTAAA-AACC-AGGCA
1 TTAGCGGCGC-TTTTCCAAAAACGCCGCTAAAGCACCTA-GCA
* * *
8271353 TTAGCGGCGCTTTTCCAAAAATGCCGCTAAA-TACCTGGGCA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCACCT-AGCA
* * *
8271394 TTAGCGGCGCTTTGCCAAAAACGCCGCTAAAG-ACTTGGGCA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCACCT-AGCA
8271435 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGC
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGC
8271468 CATGAAAGGT
Statistics
Matches: 175, Mismatches: 15, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
40 36 0.21
41 118 0.67
42 21 0.12
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (41 bp):
TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCACCTAGCA
Found at i:8274173 original size:16 final size:17
Alignment explanation
Indices: 8274142--8274180 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
8274132 ACATCATGTG
8274142 AAAAATTAAATGAAATA
1 AAAAATTAAATGAAATA
*
8274159 AAAAATT-AATTAAATA
1 AAAAATTAAATGAAATA
*
8274175 ACAAAT
1 AAAAAT
8274181 AACAAAACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.26
Consensus pattern (17 bp):
AAAAATTAAATGAAATA
Found at i:8274714 original size:92 final size:94
Alignment explanation
Indices: 8274517--8274742 Score: 246
Period size: 92 Copynumber: 2.4 Consensus size: 94
8274507 TGTTAATTCT
* *
8274517 ATATACTATAATAAAACACATGTTGATAGTTCAAGTACTACATTATTAGACATTTTCAAAGTACA
1 ATATACCATAATAAAACACATATTGATAGTTCAAGTACTA-ATTATTAGACATTTTCAAAGTACA
* * *
8274582 AATGCTACATTGGGTATTTTACGAAAGTGC
65 AATGCTACATTAGATATTTTACGAAAGTAC
* *
8274612 ATATACCATAAGAAATCACATATTGATAGTTCAAGTACT-A-TATTAGACATTTTCAAAGTACAT
1 ATATACCATAATAAAACACATATTGATAGTTCAAGTACTAATTATTAGACATTTTCAAAGTACA-
* * *
8274675 ATAT-C-AGATTAGATATTTTATGAAAGTAT
65 A-ATGCTACATTAGATATTTTACGAAAGTAC
* * * *
8274704 GTGTATCATAATAAAACTA-ATATTAATAGTTCAAAGTAC
1 ATATACCATAATAAAAC-ACATATTGATAGTTC-AAGTAC
8274743 ATGTACTACA
Statistics
Matches: 111, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
92 64 0.58
93 10 0.09
94 2 0.02
95 35 0.32
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.35
Consensus pattern (94 bp):
ATATACCATAATAAAACACATATTGATAGTTCAAGTACTAATTATTAGACATTTTCAAAGTACAA
ATGCTACATTAGATATTTTACGAAAGTAC
Found at i:8276072 original size:15 final size:16
Alignment explanation
Indices: 8276053--8276090 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
8276043 TTGTGATTTA
8276053 ATTTTT-AT-ATTTTT
1 ATTTTTAATGATTTTT
8276067 ATTTTTAATGATTTTAT
1 ATTTTTAATGATTTT-T
8276084 ATTTTTA
1 ATTTTTA
8276091 TAAGAGGTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.29
15 2 0.10
16 5 0.24
17 8 0.38
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (16 bp):
ATTTTTAATGATTTTT
Found at i:8282669 original size:14 final size:15
Alignment explanation
Indices: 8282650--8282678 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
8282640 GGCCAAAGCT
8282650 TTTCTTTTTT-TTTC
1 TTTCTTTTTTGTTTC
8282664 TTTCTTTTTTGTTTC
1 TTTCTTTTTTGTTTC
8282679 CCTATTCCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.00, C:0.14, G:0.03, T:0.83
Consensus pattern (15 bp):
TTTCTTTTTTGTTTC
Found at i:8285771 original size:54 final size:54
Alignment explanation
Indices: 8285713--8285864 Score: 153
Period size: 54 Copynumber: 2.8 Consensus size: 54
8285703 GTCTCAACAG
* *
8285713 ATTATCCCGTGTTTAATGT-CTAGTTAGACTATCTTGTGTTTAACATCTCGTCGA
1 ATTATCCCGTGTTTAATGTCCTA-TTAGACTATCTCGTGTTTAACATCTCATCGA
* * **
8285767 ATTATCCAGTGTTCAATGTCCTATTAGTTTATCTCGTGTTTAACATCTCATCGA
1 ATTATCCCGTGTTTAATGTCCTATTAGACTATCTCGTGTTTAACATCTCATCGA
* * * ** ** * *
8285821 ACTATCTCATGTTTAACATCCCGTTGGACTATCCCGTGTTTAAC
1 ATTATCCCGTGTTTAATGTCCTATTAGACTATCTCGTGTTTAAC
8285865 TTCCCGTTAA
Statistics
Matches: 78, Mismatches: 19, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
54 75 0.96
55 3 0.04
ACGTcount: A:0.23, C:0.22, G:0.14, T:0.41
Consensus pattern (54 bp):
ATTATCCCGTGTTTAATGTCCTATTAGACTATCTCGTGTTTAACATCTCATCGA
Found at i:8285826 original size:27 final size:27
Alignment explanation
Indices: 8285796--8285908 Score: 100
Period size: 27 Copynumber: 4.2 Consensus size: 27
8285786 CCTATTAGTT
*
8285796 TATCTCGTGTTTAACATCTCATCGAAC
1 TATCTCGTGTTTAACATCCCATCGAAC
* * * *
8285823 TATCTCATGTTTAACATCCCGTTGGAC
1 TATCTCGTGTTTAACATCCCATCGAAC
* * * **
8285850 TATCCCGTGTTTAACTTCCCGTTAAAC
1 TATCTCGTGTTTAACATCCCATCGAAC
* * **
8285877 TATCTCATATTTAACATCCCATTAAAC
1 TATCTCGTGTTTAACATCCCATCGAAC
8285904 TATCT
1 TATCT
8285909 ATGATGTCGT
Statistics
Matches: 71, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 71 1.00
ACGTcount: A:0.27, C:0.27, G:0.09, T:0.38
Consensus pattern (27 bp):
TATCTCGTGTTTAACATCCCATCGAAC
Found at i:8286037 original size:45 final size:45
Alignment explanation
Indices: 8285986--8286114 Score: 143
Period size: 45 Copynumber: 2.9 Consensus size: 45
8285976 ACTATCAAAG
* * *
8285986 GATGCCATAATGTCTTTCAGCCATCGTTTTACTCATTTTCA-TCAT
1 GATGCCATAGTGTCTTTCAGCTATGGTTTTACTCATTTTCATTC-T
** * * *
8286031 GATGCCATAGCATCTTTCAGCTATGGTCTTACTAATTTCCATTCT
1 GATGCCATAGTGTCTTTCAGCTATGGTTTTACTCATTTTCATTCT
* * *
8286076 GATGCTATAGTGCCTTTCAACTATGGTTTTACTCATTTT
1 GATGCCATAGTGTCTTTCAGCTATGGTTTTACTCATTTT
8286115 AGGCTTATAG
Statistics
Matches: 67, Mismatches: 16, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
45 65 0.97
46 2 0.03
ACGTcount: A:0.22, C:0.22, G:0.13, T:0.43
Consensus pattern (45 bp):
GATGCCATAGTGTCTTTCAGCTATGGTTTTACTCATTTTCATTCT
Found at i:8289822 original size:11 final size:12
Alignment explanation
Indices: 8289759--8289823 Score: 68
Period size: 11 Copynumber: 5.8 Consensus size: 12
8289749 AACTTAACCT
8289759 CTCTCAAATTTC
1 CTCTCAAATTTC
8289771 CTCTC-AATTTC
1 CTCTCAAATTTC
*
8289782 CTCTC-AATTTG
1 CTCTCAAATTTC
*
8289793 CTCTCAAA-TCC
1 CTCTCAAATTTC
8289804 CT-TCCAAATTT-
1 CTCT-CAAATTTC
8289815 CTCTCAAAT
1 CTCTCAAAT
8289824 CCATATTTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
10 1 0.02
11 35 0.78
12 9 0.20
ACGTcount: A:0.25, C:0.34, G:0.02, T:0.40
Consensus pattern (12 bp):
CTCTCAAATTTC
Found at i:8290286 original size:39 final size:40
Alignment explanation
Indices: 8290184--8290286 Score: 147
Period size: 40 Copynumber: 2.6 Consensus size: 40
8290174 AAAATGCTGG
* *
8290184 TAAAAATCGAGCATTAGCGGCGTTTTATGAAAATCGCCAC
1 TAAAAATCGAGCATTAGCGGCGTTTTATAAAAAACGCCAC
* *
8290224 TAAAGATCGAGCATTAGCGGCGTTTT-TCAAAAAACGCCGC
1 TAAAAATCGAGCATTAGCGGCGTTTTAT-AAAAAACGCCAC
8290264 TAAAAAT-GAGCATTAGCGGCGTT
1 TAAAAATCGAGCATTAGCGGCGTT
8290287 AACCAAAGCC
Statistics
Matches: 57, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
39 17 0.30
40 40 0.70
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.24
Consensus pattern (40 bp):
TAAAAATCGAGCATTAGCGGCGTTTTATAAAAAACGCCAC
Found at i:8290377 original size:41 final size:40
Alignment explanation
Indices: 8290320--8290480 Score: 205
Period size: 41 Copynumber: 3.9 Consensus size: 40
8290310 TTCTTACCTT
* *
8290320 TGGGGGCTTTAGCGGCGTTTTCGTAAAAGCGCTGCTAATGC
1 TGGGGTCTTTAGCGGCGTTTT-GTAAAAGCGCCGCTAATGC
* *
8290361 TGGGGTTTTTAGCGGCGTCTTTGGAAAAGCGCCGCTAATGC
1 TGGGGTCTTTAGCGGCGT-TTTGTAAAAGCGCCGCTAATGC
* * * *
8290402 TGGTGTCTTTAGCGGCGTTTTTTAAAAAGCGCCACTAATGT
1 TGGGGTCTTTAGCGGCGTTTTGT-AAAAGCGCCGCTAATGC
*
8290443 TGGGGTCTTTAGCGGCGCTTTTGAAAAAGCGCCGCTAA
1 TGGGGTCTTTAGCGGCG-TTTTGTAAAAGCGCCGCTAA
8290481 AAATATTTTA
Statistics
Matches: 103, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
40 3 0.03
41 93 0.90
42 7 0.07
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.30
Consensus pattern (40 bp):
TGGGGTCTTTAGCGGCGTTTTGTAAAAGCGCCGCTAATGC
Found at i:8293662 original size:24 final size:24
Alignment explanation
Indices: 8293630--8293683 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
8293620 GGGAAAAGTA
* *
8293630 AGTTC-TTTCTGTATGTGTTGAAC
1 AGTTCATTTCTGCATGTATTGAAC
* *
8293653 GGTTCATTTCTGCATGTATTTAAC
1 AGTTCATTTCTGCATGTATTGAAC
8293677 AGTTCAT
1 AGTTCAT
8293684 CTTTCATCAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 4 0.16
24 21 0.84
ACGTcount: A:0.20, C:0.15, G:0.19, T:0.46
Consensus pattern (24 bp):
AGTTCATTTCTGCATGTATTGAAC
Found at i:8295825 original size:20 final size:20
Alignment explanation
Indices: 8295793--8295830 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8295783 TAACGAGGTA
8295793 AATTTTATATTAGATTTTAT
1 AATTTTATATTAGATTTTAT
8295813 AATTATTAT-TTAGATTTT
1 AATT-TTATATTAGATTTT
8295831 TAAAAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (20 bp):
AATTTTATATTAGATTTTAT
Found at i:8296013 original size:7 final size:7
Alignment explanation
Indices: 8296001--8296025 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8295991 AGTTGATTGC
8296001 TATTTAG
1 TATTTAG
8296008 TATTTAG
1 TATTTAG
8296015 TATTTAG
1 TATTTAG
8296022 TATT
1 TATT
8296026 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:8297193 original size:45 final size:45
Alignment explanation
Indices: 8297106--8297193 Score: 133
Period size: 45 Copynumber: 2.0 Consensus size: 45
8297096 ATATTTTGAA
* *
8297106 TATTTTGATATTATTTTATGTAATAAAATAATAAATTTTTTGAGT
1 TATTTTGATATTATTTGATGTAATAAAATAAGAAATTTTTTGAGT
*
8297151 TATTTTGATATTATTTGATGTAATAAAAT-AGAAGTTTATTTGA
1 TATTTTGATATTATTTGATGTAATAAAATAAGAAATTT-TTTGA
8297194 TGTAATAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
44 6 0.15
45 33 0.85
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (45 bp):
TATTTTGATATTATTTGATGTAATAAAATAAGAAATTTTTTGAGT
Found at i:8297195 original size:25 final size:25
Alignment explanation
Indices: 8297161--8297208 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
8297151 TATTTTGATA
8297161 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
8297186 TTATTTGATGTAATAAAATAGAA
1 TTATTTGATGTAATAAAATAGAA
8297209 ATTTTTTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.40
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:8297232 original size:69 final size:70
Alignment explanation
Indices: 8297116--8297245 Score: 226
Period size: 69 Copynumber: 1.9 Consensus size: 70
8297106 TATTTTGATA
* *
8297116 TTATTTTATGTAATAAAATAATAAATTTTTTGAGTTATTTTGATATTATTTGATGTAATAAAATA
1 TTATTTGATGTAATAAAATAAGAAATTTTTTGAGTTATTTTGATATTATTTGATGTAATAAAATA
8297181 GAAGT
66 GAAGT
*
8297186 TTATTTGATGTAATAAAAT-AGAAATTTTTTTAGTTATTTTGATATTATTTGATGTAATAA
1 TTATTTGATGTAATAAAATAAGAAATTTTTTGAGTTATTTTGATATTATTTGATGTAATAA
8297246 CATGAGATTA
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
69 39 0.68
70 18 0.32
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (70 bp):
TTATTTGATGTAATAAAATAAGAAATTTTTTGAGTTATTTTGATATTATTTGATGTAATAAAATA
GAAGT
Found at i:8300548 original size:30 final size:30
Alignment explanation
Indices: 8300512--8300568 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
8300502 CCGAGCCTTG
*
8300512 GGGCAAAAATGTAATTATGTAAAAGTTTAT
1 GGGCAAAAATGTAATTATGAAAAAGTTTAT
* *
8300542 GGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGCAAAAATGTAATTATGAAAAAGTT
8300569 AGAGTCGAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.42, C:0.04, G:0.21, T:0.33
Consensus pattern (30 bp):
GGGCAAAAATGTAATTATGAAAAAGTTTAT
Found at i:8303349 original size:125 final size:124
Alignment explanation
Indices: 8303103--8303475 Score: 507
Period size: 125 Copynumber: 3.0 Consensus size: 124
8303093 CAAACATGTT
* * * *
8303103 ACTGTAGCAAAAGCGCGTCCACGTGGGTGCAATTTCATAAATTCTTCTCATAAAGCATCATGGTA
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTAACAAATTCTTCTCATAAAGCATCAT-GTA
* *
8303168 GAAGCGATTTAAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGACCA
65 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGACCA
* * * * *
8303228 ACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTTAGAAATTCTTCTGA-AATAGCATCCTGCT
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTAACAAATTCTTCTCATAA-AGCATCATG-T
* * * * *
8303292 TGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATAATTT-TTTCAGGACCT
64 AGAAGCG-ATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGACCA
* *
8303353 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTAACAAATTCTTCTCATAAAGCATCTTGTAA
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTAACAAATTCTTCTCATAAAGCATCATGTAG
* * *
8303418 AAGCGATTTTATACTATTTGCTCAGAAATGCCAACTCAAAATTATTTCTTCCAGGACC
66 AAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGACC
8303476 TAAAAATCCT
Statistics
Matches: 216, Mismatches: 27, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
123 37 0.17
124 18 0.08
125 121 0.56
126 40 0.19
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (124 bp):
ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTAACAAATTCTTCTCATAAAGCATCATGTAG
AAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGACCA
Found at i:8317569 original size:12 final size:12
Alignment explanation
Indices: 8317552--8317599 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
8317542 ACTTAATCAC
8317552 TTTAATATTAAA
1 TTTAATATTAAA
*
8317564 TTTAAT-CTAAA
1 TTTAATATTAAA
*
8317575 TATT-AGATTAAA
1 T-TTAATATTAAA
8317587 TTTAATATTAAA
1 TTTAATATTAAA
8317599 T
1 T
8317600 ATTATTAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
11 8 0.28
12 21 0.72
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:8317586 original size:23 final size:24
Alignment explanation
Indices: 8317558--8317603 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
8317548 TCACTTTAAT
8317558 ATTAAATTTAAT-CTAAATATTAG
1 ATTAAATTTAATACTAAATATTAG
*
8317581 ATTAAATTTAATATTAAATATTA
1 ATTAAATTTAATACTAAATATTA
8317604 TTAAAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (24 bp):
ATTAAATTTAATACTAAATATTAG
Found at i:8317610 original size:23 final size:21
Alignment explanation
Indices: 8317557--8317608 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 21
8317547 ATCACTTTAA
8317557 TATTAAATTTAATCTAAATAT
1 TATTAAATTTAATCTAAATAT
*
8317578 TAGATTAAATTTAATATTAAATAT
1 T--ATTAAATTTAAT-CTAAATAT
8317602 TATTAAA
1 TATTAAA
8317609 ATAATAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 1 0.04
22 6 0.22
23 12 0.44
24 8 0.30
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (21 bp):
TATTAAATTTAATCTAAATAT
Found at i:8328726 original size:109 final size:107
Alignment explanation
Indices: 8328448--8328752 Score: 371
Period size: 109 Copynumber: 2.8 Consensus size: 107
8328438 CTAAATGAGG
* * * * *
8328448 CAATATTTAGCGTTTAGAAATTCGAGAAAACGTGCCCTAGTGTGCTGGGTTTCGATTTTCTCGTT
1 CAATATTTTGCGTTTGGAAATTCGAG-GAACGTGCCCTAATGTGCTGGGTTTCGATTTTCTCATT
* * * * *
8328513 CAACCAAATAACTAAGTATCCTTTTAAAATTTTTAAAATAAGG
65 CAACCAAATAGCCAAATATCCTTTAAAAATTTTTAAAATAAGA
* *
8328556 CAATATTTT-CGTTTGGAAATTCGAGGAAACGCGCCTTAATGTGCTGGGTTTCGAATTTTTCTCA
1 CAATATTTTGCGTTTGGAAATTCGAGG-AACGTGCCCTAATGTGCTGGGTTTCG-A-TTTTCTCA
*
8328620 TTCAACCAAATAGCCAAATATCCTTTCAAAAATTTTTTCAAAGTAAGA
63 TTCAACCAAATAGCCAAATATCCTTT-AAAAA-TTTTT-AAAATAAGA
* * * *
8328668 CTATATTTTGCGTTTGGAAATTTGAGGAACGTGCCCTAATGTGCGGGGTTTCGA-TTTCTCATTT
1 CAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAATGTGCTGGGTTTCGATTTTCTCATTC
*
8328732 AACCAAATAGTCAAATATCCT
66 AACCAAATAGCCAAATATCCT
8328753 CTTGAATTTT
Statistics
Matches: 170, Mismatches: 20, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
107 38 0.22
108 9 0.05
109 59 0.35
110 4 0.02
111 6 0.04
112 38 0.22
113 16 0.09
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (107 bp):
CAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAATGTGCTGGGTTTCGATTTTCTCATTC
AACCAAATAGCCAAATATCCTTTAAAAATTTTTAAAATAAGA
Found at i:8336070 original size:20 final size:20
Alignment explanation
Indices: 8336045--8336084 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
8336035 CGTAAAATGA
*
8336045 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
8336065 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
8336085 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:8336074 original size:34 final size:35
Alignment explanation
Indices: 8336030--8336096 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
8336020 CAGTAAAATA
*
8336030 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
8336064 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
8336097 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:8336100 original size:14 final size:15
Alignment explanation
Indices: 8336024--8336100 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
8336014 GATTGCCAGT
* *
8336024 AAAAT-ATTTTCCGT
1 AAAATGATTTTCTGG
8336038 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
8336052 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
8336072 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
8336087 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
8336101 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 24 0.48
15 12 0.24
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:8352679 original size:6 final size:6
Alignment explanation
Indices: 8352665--8352700 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
8352655 AATATATTGC
* *
8352665 AATAAA AATAGA AATAGA AATAAA AATAAA AATAAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
8352701 GAACACACAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.17
Consensus pattern (6 bp):
AATAAA
Found at i:8357816 original size:39 final size:39
Alignment explanation
Indices: 8357762--8357840 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
8357752 AAGATAAAAA
*
8357762 ACTTAAATTTGAAAAATCATTTTTATTTAATTATAATAT
1 ACTTAAATTTCAAAAATCATTTTTATTTAATTATAATAT
8357801 ACTTAAATTTCAAAAATCATTTTTATTTAATTATAATAT
1 ACTTAAATTTCAAAAATCATTTTTATTTAATTATAATAT
8357840 A
1 A
8357841 TACTTTTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.44, C:0.06, G:0.01, T:0.48
Consensus pattern (39 bp):
ACTTAAATTTCAAAAATCATTTTTATTTAATTATAATAT
Found at i:8361895 original size:22 final size:22
Alignment explanation
Indices: 8361847--8361896 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
8361837 ATCACATTAC
8361847 ACATATATCACATAACATTTAA
1 ACATATATCACATAACATTTAA
*
8361869 GCATATATCACA-ATAC-TTATAA
1 ACATATATCACATA-ACATT-TAA
8361891 ACATAT
1 ACATAT
8361897 TTCTAGATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 3 0.12
22 21 0.88
ACGTcount: A:0.48, C:0.18, G:0.02, T:0.32
Consensus pattern (22 bp):
ACATATATCACATAACATTTAA
Found at i:8364332 original size:37 final size:37
Alignment explanation
Indices: 8364250--8364332 Score: 87
Period size: 37 Copynumber: 2.3 Consensus size: 37
8364240 TAGCCATGGG
* *
8364250 CATAC-TCAAGTTATGACGATCCGTTGGACTTGTCAT
1 CATACTTCAAGTTATGACGATCCATTGAACTTGTCAT
** * * * *
8364286 CATGTTTCAAGTTATTACGGTCTATTGAACTTGTCCT
1 CATACTTCAAGTTATGACGATCCATTGAACTTGTCAT
8364323 CATACTTCAA
1 CATACTTCAA
8364333 ATTAAGACAA
Statistics
Matches: 36, Mismatches: 10, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
36 3 0.08
37 33 0.92
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CATACTTCAAGTTATGACGATCCATTGAACTTGTCAT
Found at i:8364535 original size:42 final size:42
Alignment explanation
Indices: 8364457--8364538 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
8364447 GCAGGCATGA
* *
8364457 ATCTGTATCTATGAATCCATATATAAGAATATGTACTTATGT
1 ATCTGTATCTATGAATCCACATATAAGAATACGTACTTATGT
* * * *
8364499 ATCTGTATTTATGAATCCACATATATGATTCCGTACTTAT
1 ATCTGTATCTATGAATCCACATATAAGAATACGTACTTAT
8364539 AAATCCATAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.41
Consensus pattern (42 bp):
ATCTGTATCTATGAATCCACATATAAGAATACGTACTTATGT
Found at i:8364538 original size:28 final size:28
Alignment explanation
Indices: 8364507--8364608 Score: 91
Period size: 28 Copynumber: 3.6 Consensus size: 28
8364497 GTATCTGTAT
* *
8364507 TTATGAATCCACATATATGATTCCGTAC
1 TTATAAATCCACATATATGAATCCGTAC
* *
8364535 TTATAAATCCATATATATGAATCTGTA-
1 TTATAAATCCACATATATGAATCCGTAC
* * *
8364562 -TATAGGAGTCCGCATATATGAATCAGTAC
1 TTATA--AATCCACATATATGAATCCGTAC
* *
8364591 TTATAAATCAATATATAT
1 TTATAAATCCACATATAT
8364609 AATTTCGTAT
Statistics
Matches: 58, Mismatches: 12, Indels: 8
0.74 0.15 0.10
Matches are distributed among these distances:
26 4 0.07
28 50 0.86
30 4 0.07
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (28 bp):
TTATAAATCCACATATATGAATCCGTAC
Found at i:8364559 original size:56 final size:56
Alignment explanation
Indices: 8364494--8364622 Score: 161
Period size: 56 Copynumber: 2.3 Consensus size: 56
8364484 AATATGTACT
* * * *
8364494 TATGTATCTGTATTTATGAATCCACATATATGATTCCGTACTTATAAATCCATATA
1 TATGAATCTGTATTTATGAATCCACATATATGAATCAGTACTTATAAATCAATATA
* * * *
8364550 TATGAATCTGTATATAGGAGTCCGCATATATGAATCAGTACTTATAAATCAATATA
1 TATGAATCTGTATTTATGAATCCACATATATGAATCAGTACTTATAAATCAATATA
*
8364606 TAT-AATTTCGTATTTAT
1 TATGAATCT-GTATTTAT
8364623 AATTTTGCAT
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
55 4 0.07
56 57 0.93
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (56 bp):
TATGAATCTGTATTTATGAATCCACATATATGAATCAGTACTTATAAATCAATATA
Found at i:8364623 original size:14 final size:14
Alignment explanation
Indices: 8364602--8364651 Score: 55
Period size: 14 Copynumber: 3.6 Consensus size: 14
8364592 TATAAATCAA
8364602 TATATATAATTTCG
1 TATATATAATTTCG
* *
8364616 TATTTATAATTTTG
1 TATATATAATTTCG
* *
8364630 CATATATGATTTCG
1 TATATATAATTTCG
*
8364644 TATCTATA
1 TATATATA
8364652 GTTCTGCATA
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.52
Consensus pattern (14 bp):
TATATATAATTTCG
Found at i:8364667 original size:28 final size:28
Alignment explanation
Indices: 8364603--8364668 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 28
8364593 ATAAATCAAT
* * *
8364603 ATATATAATTTCGTATTTATAATTTTGC
1 ATATATGATTTCGTATCTATAATTCTGC
*
8364631 ATATATGATTTCGTATCTATAGTTCTGC
1 ATATATGATTTCGTATCTATAATTCTGC
*
8364659 ATATGTGATT
1 ATATATGATT
8364669 CTGCATCCAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.29, C:0.09, G:0.12, T:0.50
Consensus pattern (28 bp):
ATATATGATTTCGTATCTATAATTCTGC
Found at i:8365854 original size:17 final size:17
Alignment explanation
Indices: 8365828--8365868 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
8365818 ATATATATAA
8365828 TTTATCATTT-TAAATAT
1 TTTATCATTTATAAA-AT
*
8365845 TTTATTATTTATAAAA-
1 TTTATCATTTATAAAAT
8365861 TTTATCAT
1 TTTATCAT
8365869 AAAAGCTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 7 0.33
17 10 0.48
18 4 0.19
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (17 bp):
TTTATCATTTATAAAAT
Found at i:8369607 original size:22 final size:24
Alignment explanation
Indices: 8369580--8369628 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 24
8369570 TAAAAGTAAA
*
8369580 AAAAAAATTTGTTAAAATAATAGC
1 AAAAAATTTTGTTAAAATAATAGC
8369604 AAAAAATTTTTGTTAAAATAATAGC
1 AAAAAA-TTTTGTTAAAATAATAGC
8369629 TTAACTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.55, C:0.04, G:0.08, T:0.33
Consensus pattern (24 bp):
AAAAAATTTTGTTAAAATAATAGC
Found at i:8374192 original size:30 final size:30
Alignment explanation
Indices: 8374158--8374229 Score: 126
Period size: 30 Copynumber: 2.4 Consensus size: 30
8374148 TTTTATAAGG
*
8374158 CTCAATTGATTGCTAATTTTTAATTAACAA
1 CTCAATTAATTGCTAATTTTTAATTAACAA
*
8374188 CTCAATTAATTGCTAATTTTTAATTAAGAA
1 CTCAATTAATTGCTAATTTTTAATTAACAA
8374218 CTCAATTAATTG
1 CTCAATTAATTG
8374230 ATTGCCCCTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.43
Consensus pattern (30 bp):
CTCAATTAATTGCTAATTTTTAATTAACAA
Found at i:8375957 original size:17 final size:16
Alignment explanation
Indices: 8375916--8375958 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
8375906 TCACTTTCAC
8375916 ATTCAATTTCTCATTT
1 ATTCAATTTCTCATTT
* *
8375932 ATACAAATTTTTCATTTT
1 ATTC-AATTTCTCA-TTT
8375950 ATTCAATTT
1 ATTCAATTT
8375959 AGTCCCTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
16 3 0.14
17 13 0.59
18 6 0.27
ACGTcount: A:0.30, C:0.14, G:0.00, T:0.56
Consensus pattern (16 bp):
ATTCAATTTCTCATTT
Found at i:8377224 original size:22 final size:22
Alignment explanation
Indices: 8377199--8377251 Score: 106
Period size: 22 Copynumber: 2.4 Consensus size: 22
8377189 TGAATAATGA
8377199 TGAAATGTTGAATTAAGTGAAT
1 TGAAATGTTGAATTAAGTGAAT
8377221 TGAAATGTTGAATTAAGTGAAT
1 TGAAATGTTGAATTAAGTGAAT
8377243 TGAAATGTT
1 TGAAATGTT
8377252 ATATGATTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.40, C:0.00, G:0.23, T:0.38
Consensus pattern (22 bp):
TGAAATGTTGAATTAAGTGAAT
Found at i:8378502 original size:18 final size:17
Alignment explanation
Indices: 8378479--8378514 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
8378469 AATCGTGATT
*
8378479 TGGTATCGATATTTAATA
1 TGGTATCGA-ATTAAATA
8378497 TGGTATCGAATTAAATA
1 TGGTATCGAATTAAATA
8378514 T
1 T
8378515 CAATACCAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.36, C:0.06, G:0.17, T:0.42
Consensus pattern (17 bp):
TGGTATCGAATTAAATA
Found at i:8380972 original size:5 final size:5
Alignment explanation
Indices: 8380962--8380991 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
8380952 GAGACGAGGG
8380962 CATAT CATAT CATAT CATAT CATAT CATAT
1 CATAT CATAT CATAT CATAT CATAT CATAT
8380992 TGGTAGCCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (5 bp):
CATAT
Found at i:8382509 original size:15 final size:15
Alignment explanation
Indices: 8382489--8382521 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
8382479 TTTGACATCC
8382489 GTGCCCAACTCATAT
1 GTGCCCAACTCATAT
8382504 GTGCCCAACTCATAT
1 GTGCCCAACTCATAT
8382519 GTG
1 GTG
8382522 GACGGACATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (15 bp):
GTGCCCAACTCATAT
Found at i:8389743 original size:71 final size:71
Alignment explanation
Indices: 8389627--8389848 Score: 239
Period size: 71 Copynumber: 3.1 Consensus size: 71
8389617 ATTCGATTGT
* * * * ** * *
8389627 TGAGATCCAACATATGTTGCGGATTTTTGACAACTTGAGTAAGCAGCATCGAATTATATTTTACT
1 TGAGATCTAACATAAGTTGCAGATTCTCAACAGCTTGAGTGAGCAGCATCGAATTATATTTTACT
8389692 GATGAC
66 GATGAC
* * * **
8389698 TGAGATCTAACATAAGTTGCGGGTTCTCAACAGTTTGAGTGAGCAGCATCGAATTATATTTTAGA
1 TGAGATCTAACATAAGTTGCAGATTCTCAACAGCTTGAGTGAGCAGCATCGAATTATATTTTACT
8389763 GATGAC
66 GATGAC
** * * * * *
8389769 TGAGAT-TCGGCATAAGTTGCATATTCTCGACAGCTTGAGTGAGCAACATCGAATTATACTTTAT
1 TGAGATCT-AACATAAGTTGCAGATTCTCAACAGCTTGAGTGAGCAGCATCGAATTATATTTTAC
*
8389833 TGATGGC
65 TGATGAC
8389840 TGAGATCTA
1 TGAGATCTA
8389849 GCACATGTTA
Statistics
Matches: 125, Mismatches: 24, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
70 1 0.01
71 123 0.98
72 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.32
Consensus pattern (71 bp):
TGAGATCTAACATAAGTTGCAGATTCTCAACAGCTTGAGTGAGCAGCATCGAATTATATTTTACT
GATGAC
Found at i:8389871 original size:71 final size:71
Alignment explanation
Indices: 8389655--8389893 Score: 223
Period size: 71 Copynumber: 3.4 Consensus size: 71
8389645 GCGGATTTTT
* * * **
8389655 GACAACTTGAGTAAGCAGCATCGAATTATATTTTACTGATGACTGAGATCTAACATAAGTTGCGG
1 GACAACTTGAGTGAGCAACATCGAATTATATTTTACTGATGACTGAGATCTAGCATAAGTTATGG
*
8389720 GTTCTC
66 ATTCTC
* ** * ** *
8389726 AACAGTTTGAGTGAGCAGCATCGAATTATATTTTAGAGATGACTGAGAT-TCGGCATAAGTTGCA
1 GACAACTTGAGTGAGCAACATCGAATTATATTTTACTGATGACTGAGATCT-AGCATAAGTT--A
8389790 T--ATTCTC
63 TGGATTCTC
* * * * * *
8389797 GACAGCTTGAGTGAGCAACATCGAATTATACTTTATTGATGGCTGAGATCTAGCACATGTTATGG
1 GACAACTTGAGTGAGCAACATCGAATTATATTTTACTGATGACTGAGATCTAGCATAAGTTATGG
**
8389862 ATTAAC
66 ATTCTC
* *
8389868 GACAACTTGAGTGAGTAACATTGAAT
1 GACAACTTGAGTGAGCAACATCGAAT
8389894 AAAGCTTGTT
Statistics
Matches: 136, Mismatches: 26, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
69 2 0.01
70 1 0.01
71 132 0.97
72 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (71 bp):
GACAACTTGAGTGAGCAACATCGAATTATATTTTACTGATGACTGAGATCTAGCATAAGTTATGG
ATTCTC
Found at i:8391291 original size:72 final size:72
Alignment explanation
Indices: 8391201--8391334 Score: 259
Period size: 72 Copynumber: 1.9 Consensus size: 72
8391191 AAGTTACCTA
8391201 AGCATTTGTATCAATTCAACCCTTCCAAATCAACCATTCAAAATGCATTTAAAACAAAAAAAACA
1 AGCATTTGTATCAATTCAACCCTTCCAAATCAACCATTCAAAATGCATTTAAAACAAAAAAAACA
8391266 TTCTTTG
66 TTCTTTG
*
8391273 AGCATTTGTATCAATTCAACCCTTCCAAATCAACCATTCAAAATGCATTTAAAACCAAAAAA
1 AGCATTTGTATCAATTCAACCCTTCCAAATCAACCATTCAAAATGCATTTAAAACAAAAAAA
8391335 CATACCATTT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
72 61 1.00
ACGTcount: A:0.44, C:0.23, G:0.05, T:0.28
Consensus pattern (72 bp):
AGCATTTGTATCAATTCAACCCTTCCAAATCAACCATTCAAAATGCATTTAAAACAAAAAAAACA
TTCTTTG
Found at i:8393155 original size:13 final size:13
Alignment explanation
Indices: 8393139--8393218 Score: 52
Period size: 13 Copynumber: 6.1 Consensus size: 13
8393129 TATAGACACA
8393139 TCATATAACCATT
1 TCATATAACCATT
** *
8393152 TCATATGTCTATTT
1 TCATATAACCA-TT
* **
8393166 TCATAAAAATATT
1 TCATATAACCATT
*
8393179 TCGTATAACCATT
1 TCATATAACCATT
* *
8393192 TCATCTAAACATT
1 TCATATAACCATT
* *
8393205 TCATTTTACCATT
1 TCATATAACCATT
8393218 T
1 T
8393219 AACACATAAT
Statistics
Matches: 49, Mismatches: 17, Indels: 2
0.72 0.25 0.03
Matches are distributed among these distances:
13 40 0.82
14 9 0.18
ACGTcount: A:0.34, C:0.19, G:0.03, T:0.45
Consensus pattern (13 bp):
TCATATAACCATT
Found at i:8409611 original size:34 final size:35
Alignment explanation
Indices: 8409567--8409633 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
8409557 CAGTAAAATA
*
8409567 TTTTCCGTAAAATGATTT-CGGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
* *
8409601 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTT
8409634 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.31, C:0.09, G:0.15, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
Found at i:8419955 original size:17 final size:17
Alignment explanation
Indices: 8419920--8419955 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
8419910 CGCAAACTAG
*
8419920 AGGAAAAAGAAAATAAA
1 AGGAAAAAGAAAAGAAA
*
8419937 AGGAAAAAGAAAAGCAA
1 AGGAAAAAGAAAAGAAA
8419954 AG
1 AG
8419956 CAAAGTTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.72, C:0.03, G:0.22, T:0.03
Consensus pattern (17 bp):
AGGAAAAAGAAAAGAAA
Found at i:8422197 original size:38 final size:40
Alignment explanation
Indices: 8422119--8422197 Score: 99
Period size: 38 Copynumber: 2.0 Consensus size: 40
8422109 CCAGTATCTG
* *
8422119 TTTAATATGATATAATATATACTCAAATTTTCATTTTTTA
1 TTTAATATGATAAAATATATACTCAAATATTCATTTTTTA
* * *
8422159 TTTAATATGGTAAAAT-TATA-TGAAATATTGATTTTTTA
1 TTTAATATGATAAAATATATACTCAAATATTCATTTTTTA
8422197 T
1 T
8422198 AGGAAAATTC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
38 16 0.47
39 4 0.12
40 14 0.41
ACGTcount: A:0.38, C:0.04, G:0.06, T:0.52
Consensus pattern (40 bp):
TTTAATATGATAAAATATATACTCAAATATTCATTTTTTA
Found at i:8432336 original size:16 final size:15
Alignment explanation
Indices: 8432315--8432348 Score: 59
Period size: 15 Copynumber: 2.2 Consensus size: 15
8432305 CTAAAACTAT
8432315 AAAAAATAAAATACAA
1 AAAAAAT-AAATACAA
8432331 AAAAAATAAATACAA
1 AAAAAATAAATACAA
8432346 AAA
1 AAA
8432349 TTGCGCAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.82, C:0.06, G:0.00, T:0.12
Consensus pattern (15 bp):
AAAAAATAAATACAA
Found at i:8432507 original size:5 final size:5
Alignment explanation
Indices: 8432497--8432527 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
8432487 CCTACTTATC
8432497 TCTAA TCTAA TCTAA TCTAA TCTAA TCTAA T
1 TCTAA TCTAA TCTAA TCTAA TCTAA TCTAA T
8432528 ATTAAAGAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.39, C:0.19, G:0.00, T:0.42
Consensus pattern (5 bp):
TCTAA
Found at i:8432565 original size:16 final size:17
Alignment explanation
Indices: 8432544--8432581 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
8432534 GAGTTATTTG
*
8432544 AAAATAACTAAAAGA-T
1 AAAATAACTAAAAAATT
8432560 AAAAT-ACTAAAAAATT
1 AAAATAACTAAAAAATT
8432576 AAAATA
1 AAAATA
8432582 TTATCCTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.71, C:0.05, G:0.03, T:0.21
Consensus pattern (17 bp):
AAAATAACTAAAAAATT
Found at i:8432740 original size:29 final size:28
Alignment explanation
Indices: 8432678--8432776 Score: 180
Period size: 28 Copynumber: 3.5 Consensus size: 28
8432668 AAAAATAAAA
8432678 ATTTACCAAAATATTACAACTTTTTTTT
1 ATTTACCAAAATATTACAACTTTTTTTT
8432706 ATTTACCAAAATATTACAACTTTTTTTTT
1 ATTTACCAAAATATTACAAC-TTTTTTTT
*
8432735 ATTTACTAAAATATTACAACTTTTTTTT
1 ATTTACCAAAATATTACAACTTTTTTTT
8432763 ATTTACCAAAATAT
1 ATTTACCAAAATAT
8432777 AAAAAAAACC
Statistics
Matches: 68, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
28 41 0.60
29 27 0.40
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.49
Consensus pattern (28 bp):
ATTTACCAAAATATTACAACTTTTTTTT
Found at i:8432787 original size:17 final size:17
Alignment explanation
Indices: 8432767--8432801 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
8432757 TTTTTTATTT
* *
8432767 ACCAAAATATAAAAAAA
1 ACCAAAAAACAAAAAAA
8432784 ACCAAAAAACAAAAAAA
1 ACCAAAAAACAAAAAAA
8432801 A
1 A
8432802 ACCTAACACC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.80, C:0.14, G:0.00, T:0.06
Consensus pattern (17 bp):
ACCAAAAAACAAAAAAA
Found at i:8432843 original size:27 final size:27
Alignment explanation
Indices: 8432813--8432898 Score: 104
Period size: 27 Copynumber: 3.2 Consensus size: 27
8432803 CCTAACACCA
* *
8432813 GCCAATTAAATTGGCGGCACCAAAGGT
1 GCCAAATAAATTGGCGGCACCAATGGT
* *
8432840 GCCAAATAAATTGGTGGCACCATTGGT
1 GCCAAATAAATTGGCGGCACCAATGGT
*
8432867 GCCAAAGT-CATTGGCGGCACC-ATGGT
1 GCCAAA-TAAATTGGCGGCACCAATGGT
8432893 GCCAAA
1 GCCAAA
8432899 GGAAAAAAAA
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 10 0.20
27 40 0.78
28 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.27, T:0.20
Consensus pattern (27 bp):
GCCAAATAAATTGGCGGCACCAATGGT
Found at i:8432999 original size:19 final size:19
Alignment explanation
Indices: 8432972--8433041 Score: 97
Period size: 19 Copynumber: 3.7 Consensus size: 19
8432962 TCAACTTATT
*
8432972 TTTTTATTTAATAACTCTA
1 TTTTAATTTAATAACTCTA
*
8432991 TTTTAATTTAATAA-ACTA
1 TTTTAATTTAATAACTCTA
* *
8433009 TTCTCATTTAATAACTCTA
1 TTTTAATTTAATAACTCTA
8433028 TTTTAATTTAATAA
1 TTTTAATTTAATAA
8433042 ACTATTAAGT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
18 15 0.35
19 28 0.65
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTTAATTTAATAACTCTA
Found at i:8433022 original size:37 final size:37
Alignment explanation
Indices: 8432977--8433047 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
8432967 TTATTTTTTT
8432977 ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
1 ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
8433014 ATTTAATAACTCTATTTTAATTTAATAAACTATT
1 ATTTAATAACTCTATTTTAATTTAATAAACTATT
8433048 AAGTAATACT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.49
Consensus pattern (37 bp):
ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
Found at i:8433286 original size:20 final size:19
Alignment explanation
Indices: 8433257--8433297 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
8433247 ATTCTCCTTC
*
8433257 AACTCAATTTTTTATTTAAT
1 AACTCAA-TTTTAATTTAAT
*
8433277 AACTCTATTTTAATTTAAT
1 AACTCAATTTTAATTTAAT
8433296 AA
1 AA
8433298 ACTATTAAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.51
Consensus pattern (19 bp):
AACTCAATTTTAATTTAAT
Found at i:8433302 original size:18 final size:19
Alignment explanation
Indices: 8433265--8433303 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
8433255 TCAACTCAAT
* *
8433265 TTTTTATTTAATAACTCTA
1 TTTTAATTTAATAACACTA
8433284 TTTTAATTTAATAA-ACTA
1 TTTTAATTTAATAACACTA
8433302 TT
1 TT
8433304 AAGTAATACT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (19 bp):
TTTTAATTTAATAACACTA
Found at i:8433648 original size:37 final size:37
Alignment explanation
Indices: 8433606--8433676 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
8433596 AGTATTACTT
8433606 AATAGTTTATTAAATTAAAATAGAGTTATTAAATGAG
1 AATAGTTTATTAAATTAAAATAGAGTTATTAAATGAG
8433643 AATAGTTTATTAAATTAAAATAGAGTTATTAAAT
1 AATAGTTTATTAAATTAAAATAGAGTTATTAAAT
8433677 AAAAAAATGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.39
Consensus pattern (37 bp):
AATAGTTTATTAAATTAAAATAGAGTTATTAAATGAG
Found at i:8433681 original size:19 final size:19
Alignment explanation
Indices: 8433612--8433680 Score: 97
Period size: 19 Copynumber: 3.7 Consensus size: 19
8433602 ACTTAATAGT
8433612 TTATTAAATTAAAATAGAG
1 TTATTAAATTAAAATAGAG
* * *
8433631 TTATTAAATGAGAATAG-T
1 TTATTAAATTAAAATAGAG
8433649 TTATTAAATTAAAATAGAG
1 TTATTAAATTAAAATAGAG
8433668 TTATTAAA-TAAAA
1 TTATTAAATTAAAA
8433681 AAATGAGTTG
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
18 20 0.47
19 23 0.53
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (19 bp):
TTATTAAATTAAAATAGAG
Found at i:8433833 original size:27 final size:26
Alignment explanation
Indices: 8433756--8433840 Score: 100
Period size: 27 Copynumber: 3.2 Consensus size: 26
8433746 TTTTTTTTCC
*
8433756 TTTGGCACCATGGTGCCGCCAA-TGA
1 TTTGGCACCATGGTGCCGCCAATTTA
*
8433781 CTTTGGCACCAATGGTGCCACCAATTTA
1 -TTTGGCACC-ATGGTGCCGCCAATTTA
*
8433809 TTTGGCACCTTTGGTGCCGCCAATTTA
1 TTTGGCACC-ATGGTGCCGCCAATTTA
*
8433836 ATTGG
1 TTTGG
8433841 TTGGTGTCAG
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 9 0.18
27 40 0.78
28 2 0.04
ACGTcount: A:0.20, C:0.26, G:0.24, T:0.31
Consensus pattern (26 bp):
TTTGGCACCATGGTGCCGCCAATTTA
Found at i:8433912 original size:27 final size:30
Alignment explanation
Indices: 8433882--8433953 Score: 107
Period size: 29 Copynumber: 2.5 Consensus size: 30
8433872 GTTTTTTTTG
*
8433882 ATATATTTTGGTAAAT-AA-AAAAAGTT-T
1 ATATATTTTGATAAATAAATAAAAAGTTGT
8433909 ATATATTTTGATAAATAAATAAAAAGTTGT
1 ATATATTTTGATAAATAAATAAAAAGTTGT
8433939 A-ATATTTTGATAAAT
1 ATATATTTTGATAAAT
8433954 TTTTATTTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
27 15 0.37
28 2 0.05
29 22 0.54
30 2 0.05
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.42
Consensus pattern (30 bp):
ATATATTTTGATAAATAAATAAAAAGTTGT
Found at i:8435372 original size:15 final size:16
Alignment explanation
Indices: 8435354--8435383 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8435344 TTATAATTTT
8435354 TATATTTTTA-GATTA
1 TATATTTTTATGATTA
8435369 TATATTTTTATGATT
1 TATATTTTTATGATT
8435384 TTTTAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (16 bp):
TATATTTTTATGATTA
Found at i:8435372 original size:24 final size:24
Alignment explanation
Indices: 8435345--8435413 Score: 81
Period size: 23 Copynumber: 2.9 Consensus size: 24
8435335 TTCCATTATT
*
8435345 TATAATTTTTAT-ATTTTTAGAT-
1 TATAATTTTTATAATTTTTAAATA
*
8435367 TATATATTTTTATGATTTTTTAAATA
1 TATA-ATTTTTAT-AATTTTTAAATA
8435393 T-TAATTTTTATAATTTTTAAA
1 TATAATTTTTATAATTTTTAAA
8435414 AGTTCACATA
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
22 4 0.10
23 17 0.43
24 8 0.20
25 10 0.25
26 1 0.03
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (24 bp):
TATAATTTTTATAATTTTTAAATA
Found at i:8436093 original size:29 final size:31
Alignment explanation
Indices: 8436034--8436095 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 31
8436024 TCTTAATATT
* *
8436034 TGTTATCTGTATTTTCATAAAATATTTAATA
1 TGTTATCTATATTTTCATAAAATATCTAATA
*
8436065 TGTTATTTATATTTT-A-AAAATATCTAATA
1 TGTTATCTATATTTTCATAAAATATCTAATA
8436094 TG
1 TG
8436096 GTGCATGAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 14 0.50
30 1 0.04
31 13 0.46
ACGTcount: A:0.37, C:0.05, G:0.06, T:0.52
Consensus pattern (31 bp):
TGTTATCTATATTTTCATAAAATATCTAATA
Found at i:8436202 original size:92 final size:92
Alignment explanation
Indices: 8436043--8436219 Score: 237
Period size: 92 Copynumber: 1.9 Consensus size: 92
8436033 TTGTTATCTG
* ** * * * *
8436043 TATTTTCATAAAATATTTAATATGTTATTTATATTTTAAAAATATCTAATATGGTGCATGAATTA
1 TATTTTCATAAAATATTTAATATGGTACCTATATTTTAAAAATATCTAATACGATACATGAACTA
8436108 TCAATACGTGTTTTATTATGATATATT
66 TCAATACGTGTTTTATTATGATATATT
* * * **
8436135 TATTTTCATAAAATGTTTAATATGGTACCTGTATTTTAAAAATATCTAATGCGATATTTGAACTA
1 TATTTTCATAAAATATTTAATATGGTACCTATATTTTAAAAATATCTAATACGATACATGAACTA
*
8436200 TCAATATGTGTTTTATTATG
66 TCAATACGTGTTTTATTATG
8436220 TTATCTGGTG
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
92 72 1.00
ACGTcount: A:0.36, C:0.07, G:0.10, T:0.47
Consensus pattern (92 bp):
TATTTTCATAAAATATTTAATATGGTACCTATATTTTAAAAATATCTAATACGATACATGAACTA
TCAATACGTGTTTTATTATGATATATT
Found at i:8438553 original size:46 final size:45
Alignment explanation
Indices: 8438497--8438649 Score: 155
Period size: 46 Copynumber: 3.3 Consensus size: 45
8438487 TTACCTGTTT
* * *
8438497 GGGTTAAACCTACACGAATCGAATAATAGTG-CTCAGTCACCGGTTA
1 GGGTTGAACCTACACGAAT-GAATAATAGTGTCT-GGTCACCCGTTA
* * ****
8438543 GGGTTGAACCTACACGAATTGGATAATAGTGTCTGGTTAGTTATTA
1 GGGTTGAACCTACACGAA-TGAATAATAGTGTCTGGTCACCCGTTA
* * *
8438589 GGATTGAACCTACACGAATTAGATAATAATGTCTGGTCACCCGTTA
1 GGGTTGAACCTACACGAATGA-ATAATAGTGTCTGGTCACCCGTTA
8438635 GGGTTGAACCTACAC
1 GGGTTGAACCTACAC
8438650 AACATATAGT
Statistics
Matches: 86, Mismatches: 18, Indels: 6
0.78 0.16 0.05
Matches are distributed among these distances:
45 1 0.01
46 82 0.95
47 3 0.03
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (45 bp):
GGGTTGAACCTACACGAATGAATAATAGTGTCTGGTCACCCGTTA
Found at i:8441156 original size:4 final size:4
Alignment explanation
Indices: 8441147--8441175 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
8441137 TAATGGGCAT
8441147 ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
8441176 CACCAAGTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:8441287 original size:27 final size:27
Alignment explanation
Indices: 8441237--8441289 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
8441227 TATAAAATAT
*
8441237 ATATATATATATGTACATATAAGAAAA
1 ATATATATATATGTACATAAAAGAAAA
*
8441264 ATATATATGTATGTGA-ATAAAAGAAA
1 ATATATATATATGT-ACATAAAAGAAA
8441290 TAAAAAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.55, C:0.02, G:0.11, T:0.32
Consensus pattern (27 bp):
ATATATATATATGTACATAAAAGAAAA
Found at i:8441445 original size:22 final size:23
Alignment explanation
Indices: 8441417--8441459 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
8441407 ATTAAGAAAT
*
8441417 ATGTACGTATATATAT-TATAAA
1 ATGTACGCATATATATATATAAA
*
8441439 ATGTACGCATGTATATATATA
1 ATGTACGCATATATATATATA
8441460 TAACAAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.42, C:0.07, G:0.12, T:0.40
Consensus pattern (23 bp):
ATGTACGCATATATATATATAAA
Found at i:8446378 original size:3 final size:3
Alignment explanation
Indices: 8446370--8446395 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
8446360 GCAAAAAATC
8446370 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
8446396 CTCAAATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:8447292 original size:42 final size:41
Alignment explanation
Indices: 8447245--8447326 Score: 105
Period size: 40 Copynumber: 2.0 Consensus size: 41
8447235 TCTTCTAGGG
* *
8447245 TTTTCATAGTTTTAGGTTAGGTTTTC-C-TTTCTTTTTCTTTTC
1 TTTTCAT--TTTTAGATTAAGTTTTCTCTTTTC-TTTTCTTTTC
8447287 TTTTCATTTTTAGATTAAGTTTTCTCTTTTCTTTTCTTTT
1 TTTTCATTTTTAGATTAAGTTTTCTCTTTTCTTTTCTTTT
8447327 TAGATTAGAT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
40 15 0.42
41 10 0.28
42 11 0.31
ACGTcount: A:0.11, C:0.13, G:0.09, T:0.67
Consensus pattern (41 bp):
TTTTCATTTTTAGATTAAGTTTTCTCTTTTCTTTTCTTTTC
Found at i:8447329 original size:30 final size:30
Alignment explanation
Indices: 8447276--8447333 Score: 100
Period size: 30 Copynumber: 1.9 Consensus size: 30
8447266 TTTTCCTTTC
8447276 TTTTTCTTTTCTTTTCATTTTTAGATTAAG
1 TTTTTCTTTTCTTTTCATTTTTAGATTAAG
8447306 TTTTCTCTTTTCTTTTC-TTTTTAGATTA
1 TTTT-TCTTTTCTTTTCATTTTTAGATTA
8447334 GATTTTATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
30 15 0.56
31 12 0.44
ACGTcount: A:0.14, C:0.12, G:0.05, T:0.69
Consensus pattern (30 bp):
TTTTTCTTTTCTTTTCATTTTTAGATTAAG
Found at i:8448155 original size:113 final size:113
Alignment explanation
Indices: 8447873--8448169 Score: 312
Period size: 114 Copynumber: 2.6 Consensus size: 113
8447863 TTACCATCCT
* * * *
8447873 GCGCCGCAAAATCTCA-AGACCAAAACGCATCGTTTTTGTCTTGATGTATACTAGAATTAATGGC
1 GCGCCGCAAAATATCATA-ACCAAAACGCATAG-TTTTGTCTTGATGTATATTAGAATTAGTGGC
* * * * * ** **
8447937 GATTATGAGAAAACGCCGCTAAAGCAAGTATTAGCGGCGCATTGTGGGAA
64 GCTTATCAAAAAACGCCACTAAAACAAGTATTAGCGGCGCATTACGAAAA
* * * * * * *
8447987 GCGCCGCAAAAAATCTTAACGAAAACACATTGTTTTGGTATCGATGTATATTAGAATTAGTGGCG
1 GCGCCGCAAAATATCATAACCAAAACGCATAGTTTT-GTCTTGATGTATATTAGAATTAGTGGCG
*
8448052 CTTA-CAAAAACACGCCACTAAAACAAGTCTTAGCGGCGC-TTACGAAAA
65 CTTATCAAAAA-ACGCCACTAAAACAAGTATTAGCGGCGCATTACGAAAA
* * *
8448100 GCGCCGCAAAATATGATAACCAAAACGCAGAGTTTTGATCTTGATGTATATTAGAATTAGTGGCA
1 GCGCCGCAAAATATCATAACCAAAACGCATAGTTTTG-TCTTGATGTATATTAGAATTAGTGGCG
8448165 CTTAT
65 CTTAT
8448170 TAGAAGTGCC
Statistics
Matches: 148, Mismatches: 30, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
112 1 0.01
113 70 0.47
114 76 0.51
115 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.26
Consensus pattern (113 bp):
GCGCCGCAAAATATCATAACCAAAACGCATAGTTTTGTCTTGATGTATATTAGAATTAGTGGCGC
TTATCAAAAAACGCCACTAAAACAAGTATTAGCGGCGCATTACGAAAA
Found at i:8448255 original size:75 final size:75
Alignment explanation
Indices: 8448102--8448256 Score: 177
Period size: 75 Copynumber: 2.1 Consensus size: 75
8448092 TACGAAAAGC
* * * * *
8448102 GCCGCAAAATATGATAACCAAAACGCAGAGTTTTGATCTTGATGTATATTAGAATTAGTGGCACT
1 GCCGCAAAAAATCATAACCAAAACGCAGAGTTTTGATCTCGATGTATAATACAATTAGTGGCACT
** * *
8448167 TATTAGAAGT
66 TAGGAAAAAT
* * * *
8448177 GCCGCAAAAAATCTTAACCAAAACGCAGCGTTTTGGTCTCGATGTATAATACAATTAGTGGC-GT
1 GCCGCAAAAAATCATAACCAAAACGCAGAGTTTTGATCTCGATGTATAATACAATTAGTGGCACT
8448241 TAGGGAAAAAT
66 TA-GGAAAAAT
8448252 GCCGC
1 GCCGC
8448257 TAAAGCATAA
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
74 3 0.05
75 63 0.95
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (75 bp):
GCCGCAAAAAATCATAACCAAAACGCAGAGTTTTGATCTCGATGTATAATACAATTAGTGGCACT
TAGGAAAAAT
Found at i:8448345 original size:188 final size:188
Alignment explanation
Indices: 8447984--8448351 Score: 438
Period size: 188 Copynumber: 2.0 Consensus size: 188
8447974 CGCATTGTGG
* ** * *
8447984 GAAGCGCCGCAAAAAATCTTAACGAAAACACATTGTTTTGGTATCGATGTATATTAGAATTAGTG
1 GAAGCGCCGCAAAAAATCTTAACCAAAACACAGCGTTTTGGTATCGATGTATAATACAATTAGTG
* *
8448049 GCGCTTACAAAAACACGCCACTAAAACAAGTCTTAGCGGCGCTTACGAAAAGCGCCGCAAAATAT
66 GCGCTTACAAAAACACGCCACTAAAACAAGACTTAGCGGCGCTTACGAAAAGCACCGCAAAATAT
* * *
8448114 GATAACCAAAACGCAGAGTTTTGATCTTGATGTATATTAGAATTAGTGGCACTTATTA
131 CATAACCAAAACGCAGAGTTTTGATCTTGAAGTATACTAGAATTAGTGGCACTTATTA
* * *
8448172 GAAGTGCCGCAAAAAATCTTAACCAAAACGCAGCGTTTTGGTCTCGATGTATAATACAATTAGTG
1 GAAGCGCCGCAAAAAATCTTAACCAAAACACAGCGTTTTGGTATCGATGTATAATACAATTAGTG
** * * * * *** * *
8448237 GCG-TTAGGGAAAA-ATGCCGCTAAAGCATA-ACATTAGCGGCGATTTTTTAGAAGCACCGTAAA
66 GCGCTTA-CAAAAACACGCCACTAAAACA-AGAC-TTAGCGGCG-CTTACGAAAAGCACCGCAAA
* *
8448299 ATATCTTAACCAAAACGCAGAG-TTTGGTCTTGAAGTATACTAGAATTAGTGGC
127 ATATCATAACCAAAACGCAGAGTTTTGATCTTGAAGTATACTAGAATTAGTGGC
8448352 GAAAATGGAA
Statistics
Matches: 150, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
187 15 0.10
188 102 0.68
189 33 0.22
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (188 bp):
GAAGCGCCGCAAAAAATCTTAACCAAAACACAGCGTTTTGGTATCGATGTATAATACAATTAGTG
GCGCTTACAAAAACACGCCACTAAAACAAGACTTAGCGGCGCTTACGAAAAGCACCGCAAAATAT
CATAACCAAAACGCAGAGTTTTGATCTTGAAGTATACTAGAATTAGTGGCACTTATTA
Found at i:8448362 original size:114 final size:114
Alignment explanation
Indices: 8448171--8448788 Score: 545
Period size: 114 Copynumber: 5.4 Consensus size: 114
8448161 GGCACTTATT
* * * * * *
8448171 AGAAGTGCCGCAAAAAATCTTAACCAAAACGCAGCGTTTTGGTCTCGATGTATAATACAATTAGT
1 AGAAGCGCCGCAAAATATCTTAACCAAAACGCAGAGTTTTGGTCTTGATGTATACTAGAATTAGT
* * *
8448236 GGCGTT-AGGGAAAAATGCCGCTAAAGCATAACATTAGCGGCGATTTTTT
66 GGCGTTAATGG-AAAATGCCGCTAAAGCATAACATTAGCGGCGCTTTTTG
* * *
8448285 AGAAGCACCGTAAAATATCTTAACCAAAACGCAGAG-TTTGGTCTTGAAGTATACTAGAATTAGT
1 AGAAGCGCCGCAAAATATCTTAACCAAAACGCAGAGTTTTGGTCTTGATGTATACTAGAATTAGT
** * * * * *
8448349 GGCGAAAATGGAAAACGCCACTAAAGCGT-ACTATTAGCGGCGCGTTTGG
66 GGCGTTAATGGAAAATGCCGCTAAAGCATAAC-ATTAGCGGCGCTTTTTG
* * * * * *
8448398 AGAAGCGCCGCTAAATTTTGTTAACCAAAACTCAGCGTTTTGGTCTTGATGTATACTATAATTAG
1 AGAAGCGCCGC-AAAATATCTTAACCAAAACGCAGAGTTTTGGTCTTGATGTATACTAGAATTAG
* * * ** ** **
8448463 TGACGCTTACTAGAAAATGCCGCTAAATAATAGTATTAGCGGCGCTTTGCG
65 TGGCG-TTAATGGAAAATGCCGCTAAAGCATAACATTAGCGGCGCTTTTTG
* * * *
8448514 ATAAGCGCCGCAAGATATGC--ACACCAAAACGCAGAG-TTTGGTCTTGAGGTATATTAGAATTA
1 AGAAGCGCCGCAAAATAT-CTTA-ACCAAAACGCAGAGTTTTGGTCTTGATGTATACTAGAATTA
* * *
8448576 GTGGCGCTT-ATGGGAAAACGCCGCTATAGCAT-TCTATTAGCGGCGCGTTTTT-
64 GTGGCG-TTAAT-GGAAAATGCCGCTAAAGCATAAC-ATTAGCGGCGC-TTTTTG
* * * * ** * *
8448628 AAAAGCGCCGCAAAATATATTAACCAAAACGCTGCGTTTAAGTCTTGATGTATAGTGGAATTAGT
1 AGAAGCGCCGCAAAATATCTTAACCAAAACGCAGAGTTTTGGTCTTGATGTATACTAGAATTAGT
* * * **
8448693 GGCGTTCA-CGAGAAATCGCCGTTAAAGCATATTATTAGCGGCGCTTTTTG
66 GGCGTTAATGGA-AAAT-GCCGCTAAAGCATAACATTAGCGGCGCTTTTTG
* * *
8448743 GGAAGCGCCGCCAAATATCTTAACCAAAACGCACAGTTTTGGTCTT
1 AGAAGCGCCGCAAAATATCTTAACCAAAACGCAGAGTTTTGGTCTT
8448789 AACCATGCAT
Statistics
Matches: 397, Mismatches: 88, Indels: 37
0.76 0.17 0.07
Matches are distributed among these distances:
112 2 0.01
113 68 0.17
114 150 0.38
115 136 0.34
116 41 0.10
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27
Consensus pattern (114 bp):
AGAAGCGCCGCAAAATATCTTAACCAAAACGCAGAGTTTTGGTCTTGATGTATACTAGAATTAGT
GGCGTTAATGGAAAATGCCGCTAAAGCATAACATTAGCGGCGCTTTTTG
Found at i:8448653 original size:229 final size:226
Alignment explanation
Indices: 8448177--8448788 Score: 654
Period size: 229 Copynumber: 2.7 Consensus size: 226
8448167 TATTAGAAGT
* * *
8448177 GCCGCAAAAAATCTTAACCAAAACGCAGCGTTTTGGTCTCGATGTATAATACAATTAGTGGCGTT
1 GCCGCAAAATATATTAACCAAAACGCAGCGTTTTGGTCTTGATGTATAATACAATTAGTGGCGTT
* * * *** *
8448242 A-GGGAAAAATGCCGCTAAAGCATAACATTAGCGGCGATTTTTTAGAAGCACCGTAAAATATCTT
66 ACGAG-AAAATGCCGCTAAAGCATAATATTAGCGGCGCTTTGCGAGAAGCACCGCAAAATATC-T
8448306 AACCAAAACGCAGAGTTTGGTCTTGAAGTATACTAGAATTAGTGGCGAAAATGGAAAACGCCACT
129 AACCAAAACGCAGAGTTTGGTCTTGAAGTATACTAGAATTAGTGGCGAAAATGGAAAACGCCACT
* *
8448371 AAAGCGTACTATTAGCGGCGCGTTTGGAGAAGC
194 AAAGCATACTATTAGCGGCGCGTTTGGAAAAGC
* * * * * * *
8448404 GCCGCTAAATTTTGTTAACCAAAACTCAGCGTTTTGGTCTTGATGTATACTATAATTAGTGACGC
1 GCCGC-AAAATATATTAACCAAAACGCAGCGTTTTGGTCTTGATGTATAATACAATTAGTGGCG-
* ** * * * *
8448469 TTACTAGAAAATGCCGCTAAATAATAGTATTAGCGGCGCTTTGCGATAAGCGCCGCAAGATATGC
64 TTACGAGAAAATGCCGCTAAAGCATAATATTAGCGGCGCTTTGCGAGAAGCACCGCAAAATAT-C
* * ***
8448534 -ACACCAAAACGCAGAGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGGGAAAACGCC
128 TA-ACCAAAACGCAGAGTTTGGTCTTGAAGTATACTAGAATTAGTGGCGAAAAT-GGAAAACGCC
* * * **
8448598 GCTATAGCATTCTATTAGCGGCGCGTTTTTAAAAGC
191 ACTAAAGCATACTATTAGCGGCGCGTTTGGAAAAGC
* ** * **
8448634 GCCGCAAAATATATTAACCAAAACGCTGCGTTTAAGTCTTGATGTATAGTGGAATTAGTGGCGTT
1 GCCGCAAAATATATTAACCAAAACGCAGCGTTTTGGTCTTGATGTATAATACAATTAGTGGCGTT
* * ** * * *
8448699 CACGAG-AAATCGCCGTTAAAGCATATTATTAGCGGCGCTTTTTGGGAAGCGCCGCCAAATATCT
66 -ACGAGAAAAT-GCCGCTAAAGCATAATATTAGCGGCGCTTTGCGAGAAGCACCGCAAAATATC-
*
8448763 TAACCAAAACGCACAGTTTTGGTCTT
128 TAACCAAAACGCAGAG-TTTGGTCTT
8448789 AACCATGCAT
Statistics
Matches: 316, Mismatches: 58, Indels: 19
0.80 0.15 0.05
Matches are distributed among these distances:
227 5 0.02
228 57 0.18
229 198 0.63
230 56 0.18
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27
Consensus pattern (226 bp):
GCCGCAAAATATATTAACCAAAACGCAGCGTTTTGGTCTTGATGTATAATACAATTAGTGGCGTT
ACGAGAAAATGCCGCTAAAGCATAATATTAGCGGCGCTTTGCGAGAAGCACCGCAAAATATCTAA
CCAAAACGCAGAGTTTGGTCTTGAAGTATACTAGAATTAGTGGCGAAAATGGAAAACGCCACTAA
AGCATACTATTAGCGGCGCGTTTGGAAAAGC
Found at i:8449127 original size:22 final size:21
Alignment explanation
Indices: 8449097--8449151 Score: 74
Period size: 22 Copynumber: 2.6 Consensus size: 21
8449087 AGTTTATGGT
* *
8449097 GTTTTGGGTTTAAGGTTTAAG
1 GTTTGGGGTTTAAGATTTAAG
*
8449118 AGTTTGGGGTTTAAGATTTGAG
1 -GTTTGGGGTTTAAGATTTAAG
8449140 GTTTGGGGTTTA
1 GTTTGGGGTTTA
8449152 GGCTGCTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 12 0.40
22 18 0.60
ACGTcount: A:0.18, C:0.00, G:0.36, T:0.45
Consensus pattern (21 bp):
GTTTGGGGTTTAAGATTTAAG
Found at i:8449128 original size:15 final size:14
Alignment explanation
Indices: 8449109--8449143 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
8449099 TTTGGGTTTA
8449109 AGGTTTAAGAGTTTG
1 AGGTTTAAGA-TTTG
*
8449124 GGGTTTAAGATTTG
1 AGGTTTAAGATTTG
8449138 AGGTTT
1 AGGTTT
8449144 GGGGTTTAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.23, C:0.00, G:0.34, T:0.43
Consensus pattern (14 bp):
AGGTTTAAGATTTG
Found at i:8449142 original size:14 final size:15
Alignment explanation
Indices: 8449104--8449143 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
8449094 GGTGTTTTGG
*
8449104 GTTTAAGGTTTAAGA
1 GTTTGAGGTTTAAGA
*
8449119 GTTTGGGGTTTAAGA
1 GTTTGAGGTTTAAGA
8449134 -TTTGAGGTTT
1 GTTTGAGGTTT
8449144 GGGGTTTAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.23, C:0.00, G:0.33, T:0.45
Consensus pattern (15 bp):
GTTTGAGGTTTAAGA
Found at i:8450380 original size:36 final size:36
Alignment explanation
Indices: 8450340--8450437 Score: 126
Period size: 36 Copynumber: 2.6 Consensus size: 36
8450330 GTTTCTTTGC
8450340 TTTTCTTTTCTGCCGATTTGCTCCCAGTTTATTTTA
1 TTTTCTTTTCTGCCGATTTGCTCCCAGTTTATTTTA
* * *
8450376 TTTTCTTTTCTGCCGATTTGCTCCCCCCGTTTCTTTTC
1 TTTTCTTTTCTGCCGATTTGCT--CCCAGTTTATTTTA
8450414 TTTTCTTTT-TCGACCGATTTGCTC
1 TTTTCTTTTCT-G-CCGATTTGCTC
8450438 AGTTTCTGCC
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
36 22 0.40
37 2 0.04
38 21 0.38
39 10 0.18
ACGTcount: A:0.07, C:0.28, G:0.11, T:0.54
Consensus pattern (36 bp):
TTTTCTTTTCTGCCGATTTGCTCCCAGTTTATTTTA
Found at i:8451877 original size:69 final size:69
Alignment explanation
Indices: 8451792--8451931 Score: 199
Period size: 69 Copynumber: 2.0 Consensus size: 69
8451782 TTTGTTGGTT
* *
8451792 TGTTCTGGAAATTGTTTTGATAGTCTGCTGGAAAATGTTATTAATTTGTTAGTGAGTAGAAGATG
1 TGTTCTGGAAATTGTTTTGATAGTCTGCTGGAAAATGTTATTAATTTGTTAGTCAATAGAAGATG
8451857 AAAC
66 AAAC
* * * * * * *
8451861 TGTTCTGGCAGTTGTTTTGATTGTCTGCTGGAAATTGTTCTTGATTTGTTAGTCAATAGAATATG
1 TGTTCTGGAAATTGTTTTGATAGTCTGCTGGAAAATGTTATTAATTTGTTAGTCAATAGAAGATG
8451926 AAAC
66 AAAC
8451930 TG
1 TG
8451932 GAACTTGATT
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
69 62 1.00
ACGTcount: A:0.26, C:0.08, G:0.24, T:0.41
Consensus pattern (69 bp):
TGTTCTGGAAATTGTTTTGATAGTCTGCTGGAAAATGTTATTAATTTGTTAGTCAATAGAAGATG
AAAC
Found at i:8453161 original size:37 final size:37
Alignment explanation
Indices: 8453114--8453202 Score: 133
Period size: 37 Copynumber: 2.4 Consensus size: 37
8453104 ATCATAAATA
* *
8453114 AATAATCTAATCAATGTTCAAACTGTGAACATGCTTT
1 AATAAACTAATCAATGTTAAAACTGTGAACATGCTTT
* *
8453151 ATTAAACTAATCAATGTTAAAACTTTGAACATGCTTT
1 AATAAACTAATCAATGTTAAAACTGTGAACATGCTTT
*
8453188 AATGAACTAATCAAT
1 AATAAACTAATCAAT
8453203 ATATTTATAC
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.42, C:0.15, G:0.09, T:0.35
Consensus pattern (37 bp):
AATAAACTAATCAATGTTAAAACTGTGAACATGCTTT
Found at i:8453282 original size:33 final size:33
Alignment explanation
Indices: 8453245--8453320 Score: 143
Period size: 33 Copynumber: 2.3 Consensus size: 33
8453235 TTAAAACTTG
*
8453245 AATTATACATATACCAACAATTAATTTTAGGTC
1 AATTATACATACACCAACAATTAATTTTAGGTC
8453278 AATTATACATACACCAACAATTAATTTTAGGTC
1 AATTATACATACACCAACAATTAATTTTAGGTC
8453311 AATTATACAT
1 AATTATACAT
8453321 GCTTTATAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.43, C:0.16, G:0.05, T:0.36
Consensus pattern (33 bp):
AATTATACATACACCAACAATTAATTTTAGGTC
Found at i:8456509 original size:47 final size:45
Alignment explanation
Indices: 8456458--8456625 Score: 132
Period size: 47 Copynumber: 3.6 Consensus size: 45
8456448 TATTTAATAT
*
8456458 TAATTATTTTAAATTGTATAAATTCATATAAGAAAAATTATTATCAA
1 TAATTATTTTAAATT-TATAAATTCATATAAGAAAATTTATTAT-AA
* * **
8456505 TAATT-TTATGAAA-TTATATATT-AT-T-ATTAAATTATATGTAATAA
1 TAATTATT-TTAAATTTATAAATTCATATAAGAAAATT-TAT-T-ATAA
* * *
8456549 TAATTATTTTAAATTATACAAATTCATATAAGATAATTTATTAGTTA
1 TAATTATTTTAAATT-TATAAATTCATATAAGAAAATTTATTA-TAA
8456596 TAATTATTTTAAATTTTATTAAA-TCATATA
1 TAATTATTTTAAA-TTTA-TAAATTCATATA
8456626 TTTTAATTAA
Statistics
Matches: 95, Mismatches: 13, Indels: 26
0.71 0.10 0.19
Matches are distributed among these distances:
42 5 0.05
43 4 0.04
44 14 0.15
45 12 0.13
46 10 0.11
47 36 0.38
48 9 0.09
49 5 0.05
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.48
Consensus pattern (45 bp):
TAATTATTTTAAATTTATAAATTCATATAAGAAAATTTATTATAA
Found at i:8456531 original size:91 final size:91
Alignment explanation
Indices: 8456384--8456591 Score: 317
Period size: 91 Copynumber: 2.3 Consensus size: 91
8456374 TTGATTTTAG
* *
8456384 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * *
8456449 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
* * *
8456476 TAAATTCATATAAGAAAAATTATTATCAATAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
8456541 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
* *
8456567 CAAATTCATATAAGATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
8456592 GTTATAATTA
Statistics
Matches: 105, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
91 89 0.85
92 16 0.15
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:8456552 original size:44 final size:43
Alignment explanation
Indices: 8456405--8456566 Score: 116
Period size: 44 Copynumber: 3.6 Consensus size: 43
8456395 AAGAACATTT
* * *
8456405 TATTATTAAGAATT-TTATGAAATTATATATCATTATTAAATTA
1 TATTAATAATAATTATT-TGAAATTATATATAATTATTAAATTA
* * * *
8456448 TATTTAATATTAATTATTTTAAATTGTATA-AATTCATATAAGA-AA
1 TA-TTAATAATAATTATTTGAAATTATATATAATT-AT-TAA-ATTA
* *
8456493 AATTATTATCAATAATT-TTATGAAATTATATATTATTATTAAATTA
1 TATTA--AT-AATAATTATT-TGAAATTATATATAATTATTAAATTA
*
8456539 TATGTAATAATAATTATTTTAAATTATA
1 TAT-TAATAATAATTATTTGAAATTATA
8456567 CAAATTCATA
Statistics
Matches: 91, Mismatches: 15, Indels: 25
0.69 0.11 0.19
Matches are distributed among these distances:
43 5 0.05
44 40 0.44
45 12 0.13
46 11 0.12
47 20 0.22
48 3 0.03
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.49
Consensus pattern (43 bp):
TATTAATAATAATTATTTGAAATTATATATAATTATTAAATTA
Found at i:8456566 original size:26 final size:28
Alignment explanation
Indices: 8456404--8456480 Score: 52
Period size: 28 Copynumber: 2.8 Consensus size: 28
8456394 TAAGAACATT
* *
8456404 TTATTATTAAGAATTTTATGAAATTATATA
1 TTATTATT-A-AATTATATGAAATAATATA
* ** *
8456434 TCATTATTAAATTATATTTAATATTA-A
1 TTATTATTAAATTATATGAAATAATATA
*
8456461 TTATT-TTAAATTGTAT-AAAT
1 TTATTATTAAATTATATGAAAT
8456481 TCATATAAGA
Statistics
Matches: 38, Mismatches: 9, Indels: 5
0.73 0.17 0.10
Matches are distributed among these distances:
25 3 0.08
26 10 0.26
27 5 0.13
28 12 0.32
29 1 0.03
30 7 0.18
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (28 bp):
TTATTATTAAATTATATGAAATAATATA
Found at i:8456731 original size:120 final size:120
Alignment explanation
Indices: 8456607--8456904 Score: 472
Period size: 120 Copynumber: 2.5 Consensus size: 120
8456597 AATTATTTTA
* * * **
8456607 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATCAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATCATGTT-AAATTAAATTT
8456671 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAAAATATTAATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAAAATATTAATTATTAAG
* *
8456727 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTAAATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATCATGTTAAATTAAATTTT
* * *
8456792 ATAGTATCTTATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAAAATATTAATTATTAAG
*
8456847 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATCATG-TTAAAT
8456905 ATAATTAAAT
Statistics
Matches: 165, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
120 158 0.96
121 7 0.04
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATCATGTTAAATTAAATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAAAATATTAATTATTAAG
Found at i:8456744 original size:59 final size:59
Alignment explanation
Indices: 8456681--8456864 Score: 180
Period size: 59 Copynumber: 3.1 Consensus size: 59
8456671 TATAGTATCA
8456681 TATATTATGATTTGAGTAAATTCATATAAAAATATTAATTATTAAGAATTTTATTAAAT
1 TATATTATGATTTGAGTAAATTCATATAAAAATATTAATTATTAAGAATTTTATTAAAT
* * * * * * **
8456740 TATA-TAT--TTTAATTATAATAT-ATTTAATAATAATTATGTTAATTTA-AATTTTATAGTATC
1 TATATTATGATTTGAGTA-AAT-TCATATAAAAAT-ATTA-ATT-ATTAAGAATTTTAT--TAAA
8456800 T
59 T
* *
8456801 TATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
1 TATATTATGATTTGAGTAAATTCATATAAAAATATTAATTATTAAGAATTTTATTAAAT
8456860 TATAT
1 TATAT
8456865 ATTTTAATTA
Statistics
Matches: 96, Mismatches: 17, Indels: 24
0.70 0.12 0.18
Matches are distributed among these distances:
56 6 0.06
57 11 0.11
58 8 0.08
59 22 0.23
60 8 0.08
61 17 0.18
62 7 0.07
63 11 0.11
64 6 0.06
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.49
Consensus pattern (59 bp):
TATATTATGATTTGAGTAAATTCATATAAAAATATTAATTATTAAGAATTTTATTAAAT
Found at i:8456745 original size:61 final size:61
Alignment explanation
Indices: 8456680--8456867 Score: 185
Period size: 61 Copynumber: 3.1 Consensus size: 61
8456670 TTATAGTATC
8456680 ATATATTATGATTTGAGTAAATTCATATAAAAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAAAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * *
8456741 ATATATT-TTAATT-A-T-AATAT-ATTTAATAATAATTATGTTAATTTA-AATTTTA-TAGTAT
1 ATATATTATGATTTGAGTAAAT-TCATATAAAAAT-ATTA-ATT-ATTAAGAATTTTATTA-AAT
8456799 CT
61 -T
* *
8456801 -TATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAAAATATTAATTATTAAGAATTTTATTAAATT
8456861 ATATATT
1 ATATATT
8456868 TTAATTATAA
Statistics
Matches: 98, Mismatches: 15, Indels: 28
0.70 0.11 0.20
Matches are distributed among these distances:
57 11 0.11
58 8 0.08
59 18 0.18
60 18 0.18
61 25 0.26
62 7 0.07
63 11 0.11
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAAAATATTAATTATTAAGAATTTTATTAAATT
Found at i:8456767 original size:15 final size:15
Alignment explanation
Indices: 8456732--8456783 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
8456722 TTAAGAATTT
*
8456732 TATTAAATTAT-ATA
1 TATTTAATTATAATA
8456746 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
8456760 TATTTAATAATAAT-
1 TATTTAATTATAATA
8456774 TATGTTAATT
1 TAT-TTAATT
8456784 TAAATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:8456882 original size:16 final size:16
Alignment explanation
Indices: 8456861--8456909 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
8456851 TTATTAAATT
8456861 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
8456877 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
8456892 AT-TATGTTTAAATATA
1 ATATAT-TTTAATTATA
8456908 AT
1 AT
8456910 TAAATTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 2 0.07
15 11 0.39
16 15 0.54
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:8458571 original size:18 final size:18
Alignment explanation
Indices: 8458548--8458582 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8458538 GAAAGATGAA
*
8458548 AAATGAAAAATTAAAAGG
1 AAATGAAAAAGTAAAAGG
*
8458566 AAATGAGAAAGTAAAAG
1 AAATGAAAAAGTAAAAG
8458583 TAAACAAGCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.66, C:0.00, G:0.20, T:0.14
Consensus pattern (18 bp):
AAATGAAAAAGTAAAAGG
Found at i:8470173 original size:14 final size:14
Alignment explanation
Indices: 8470154--8470222 Score: 59
Period size: 14 Copynumber: 4.7 Consensus size: 14
8470144 ATGAAAATTA
8470154 AATTAACTAAGTTT
1 AATTAACTAAGTTT
*
8470168 AATTAACTAA-ATT
1 AATTAACTAAGTTT
* * *
8470181 AATATAAAATGAAAATTA
1 AAT-T-AACT--AAGTTT
8470199 AATTAACTAAGTTT
1 AATTAACTAAGTTT
8470213 AATTAACTAA
1 AATTAACTAA
8470223 ATTAATATAA
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
13 5 0.12
14 25 0.58
15 3 0.07
16 3 0.07
17 3 0.07
18 4 0.09
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.36
Consensus pattern (14 bp):
AATTAACTAAGTTT
Found at i:8470203 original size:45 final size:45
Alignment explanation
Indices: 8470139--8470233 Score: 190
Period size: 45 Copynumber: 2.1 Consensus size: 45
8470129 TTTTAATACG
8470139 ATAAAATGAAAATTAAATTAACTAAGTTTAATTAACTAAATTAAT
1 ATAAAATGAAAATTAAATTAACTAAGTTTAATTAACTAAATTAAT
8470184 ATAAAATGAAAATTAAATTAACTAAGTTTAATTAACTAAATTAAT
1 ATAAAATGAAAATTAAATTAACTAAGTTTAATTAACTAAATTAAT
8470229 ATAAA
1 ATAAA
8470234 GTAATAGTTA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 50 1.00
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (45 bp):
ATAAAATGAAAATTAAATTAACTAAGTTTAATTAACTAAATTAAT
Found at i:8481594 original size:2 final size:2
Alignment explanation
Indices: 8481587--8481614 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8481577 CTCCTGCTTC
8481587 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8481615 TTAAATATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8494232 original size:22 final size:22
Alignment explanation
Indices: 8494207--8494261 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
8494197 TAATATTTAT
8494207 AAGTGTTCCAATGAAACACTCC
1 AAGTGTTCCAATGAAACACTCC
*
8494229 AAGTGTTCTAATGAAACACTCC
1 AAGTGTTCCAATGAAACACTCC
* *
8494251 AAATATTCCAA
1 AAGTGTTCCAA
8494262 GAATCAAACT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.40, C:0.24, G:0.11, T:0.25
Consensus pattern (22 bp):
AAGTGTTCCAATGAAACACTCC
Found at i:8506160 original size:25 final size:25
Alignment explanation
Indices: 8506128--8506179 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
8506118 TAAGTATAAC
8506128 AACCTTGTACCAGCTCAAAAGGAAT
1 AACCTTGTACCAGCTCAAAAGGAAT
8506153 AACCTTGTACCAGCTCAAAAGGAAT
1 AACCTTGTACCAGCTCAAAAGGAAT
8506178 AA
1 AA
8506180 TAAAATGAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.42, C:0.23, G:0.15, T:0.19
Consensus pattern (25 bp):
AACCTTGTACCAGCTCAAAAGGAAT
Found at i:8506181 original size:28 final size:27
Alignment explanation
Indices: 8506123--8506182 Score: 88
Period size: 25 Copynumber: 2.3 Consensus size: 27
8506113 CCACCTAAGT
*
8506123 ATAACAACCTTGTACCAGCTCAAAAGG
1 ATAATAACCTTGTACCAGCTCAAAAGG
8506150 --AATAACCTTGTACCAGCTCAAAAGG
1 ATAATAACCTTGTACCAGCTCAAAAGG
8506175 AATAATAA
1 -ATAATAA
8506183 AATGAGTCCC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
25 24 0.83
28 5 0.17
ACGTcount: A:0.45, C:0.22, G:0.13, T:0.20
Consensus pattern (27 bp):
ATAATAACCTTGTACCAGCTCAAAAGG
Done.