Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 31 of 207
Found at i:8925037 original size:80 final size:80
Alignment explanation
Indices: 8924942--8925098 Score: 314
Period size: 80 Copynumber: 2.0 Consensus size: 80
8924932 TTAATACTAA
8924942 AACATACATAACATAGAAACAATAACCCTAAGCCTTAAACCTACCTAATATTTCTAACCATATAA
1 AACATACATAACATAGAAACAATAACCCTAAGCCTTAAACCTACCTAATATTTCTAACCATATAA
8925007 TTAGTCCACATACAT
66 TTAGTCCACATACAT
8925022 AACATACATAACATAGAAACAATAACCCTAAGCCTTAAACCTACCTAATATTTCTAACCATATAA
1 AACATACATAACATAGAAACAATAACCCTAAGCCTTAAACCTACCTAATATTTCTAACCATATAA
8925087 TTAGTCCACATA
66 TTAGTCCACATA
8925099 ATTTGTGCAA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 77 1.00
ACGTcount: A:0.45, C:0.25, G:0.04, T:0.26
Consensus pattern (80 bp):
AACATACATAACATAGAAACAATAACCCTAAGCCTTAAACCTACCTAATATTTCTAACCATATAA
TTAGTCCACATACAT
Found at i:8926496 original size:41 final size:39
Alignment explanation
Indices: 8926450--8926559 Score: 149
Period size: 34 Copynumber: 2.9 Consensus size: 39
8926440 ATAATTGCAT
*
8926450 TAATAATTTTTTGATAAATTAAGCTACTTTCTTTGCAATTC
1 TAATAATTTTTTGAGAAATTAAGCTACTTTCTTTG--ATTC
*
8926491 TAATAATTTTTTGAGAAATTAAGCTA----CTTT-ATTT
1 TAATAATTTTTTGAGAAATTAAGCTACTTTCTTTGATTC
8926525 TAATAATTTTTTGAGAAATTAAGCTACTTTCTTTG
1 TAATAATTTTTTGAGAAATTAAGCTACTTTCTTTG
8926560 TATCAATACT
Statistics
Matches: 62, Mismatches: 2, Indels: 12
0.82 0.03 0.16
Matches are distributed among these distances:
34 29 0.47
37 4 0.06
38 4 0.06
41 25 0.40
ACGTcount: A:0.33, C:0.09, G:0.09, T:0.49
Consensus pattern (39 bp):
TAATAATTTTTTGAGAAATTAAGCTACTTTCTTTGATTC
Found at i:8928634 original size:4 final size:4
Alignment explanation
Indices: 8928627--8928717 Score: 155
Period size: 4 Copynumber: 22.5 Consensus size: 4
8928617 TAAATGTGTG
* *
8928627 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGGA TGGA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
8928675 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTAA TGTA TG
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGT-A TGTA TG
8928718 CTGCCCTTAC
Statistics
Matches: 84, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
4 80 0.95
5 4 0.05
ACGTcount: A:0.25, C:0.00, G:0.27, T:0.47
Consensus pattern (4 bp):
TGTA
Found at i:8929723 original size:22 final size:21
Alignment explanation
Indices: 8929671--8929724 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
8929661 AATAAAAATT
* *
8929671 TTATTAATGATATTAAATTAAA
1 TTATTTAT-ATATTAAAATAAA
* *
8929693 ATATGTATATATTAAAAATAAA
1 TTATTTATATATT-AAAATAAA
8929715 TTATTTATAT
1 TTATTTATAT
8929725 TTATATTTAT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 5 0.20
22 20 0.80
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (21 bp):
TTATTTATATATTAAAATAAA
Found at i:8929725 original size:6 final size:6
Alignment explanation
Indices: 8929716--8929758 Score: 86
Period size: 6 Copynumber: 7.2 Consensus size: 6
8929706 AAAAATAAAT
8929716 TATTTA TATTTA TATTTA TATTTA TATTTA TATTTA TATTTA T
1 TATTTA TATTTA TATTTA TATTTA TATTTA TATTTA TATTTA T
8929759 GTTAAATAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
TATTTA
Found at i:8938186 original size:16 final size:17
Alignment explanation
Indices: 8938148--8938191 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
8938138 CATAAACAAG
8938148 TAACATCATTATTGATA
1 TAACATCATTATTGATA
8938165 TAACATCATT-TT-ATA
1 TAACATCATTATTGATA
8938180 TTAACAT-ATTAT
1 -TAACATCATTAT
8938192 ATTGCGTACA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 6 0.24
16 9 0.36
17 10 0.40
ACGTcount: A:0.41, C:0.11, G:0.02, T:0.45
Consensus pattern (17 bp):
TAACATCATTATTGATA
Found at i:8947873 original size:23 final size:23
Alignment explanation
Indices: 8947846--8947921 Score: 118
Period size: 23 Copynumber: 3.3 Consensus size: 23
8947836 AATAGTGCCA
8947846 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
8947869 TACTGGA-ATGTAGCCGAAGCTAC
1 CACT-GATATGTAGCCGAAGCTAC
*
8947892 CACTGAGATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
8947915 CACTGAT
1 CACTGAT
8947922 CAATAACACT
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
22 2 0.04
23 44 0.92
24 2 0.04
ACGTcount: A:0.30, C:0.25, G:0.24, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:8960190 original size:13 final size:13
Alignment explanation
Indices: 8960172--8960207 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
8960162 TTGTGGAAAT
8960172 GTGCTTTTGAGAA
1 GTGCTTTTGAGAA
*
8960185 GTGCTTTTGATAA
1 GTGCTTTTGAGAA
8960198 GTGCTTTTGA
1 GTGCTTTTGA
8960208 AAAATTTGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.19, C:0.08, G:0.28, T:0.44
Consensus pattern (13 bp):
GTGCTTTTGAGAA
Found at i:8968333 original size:21 final size:20
Alignment explanation
Indices: 8968300--8968342 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
8968290 CATTGAATCA
*
8968300 AAATGTTTAAATATAT-ATT
1 AAATGTTTAAATAAATAATT
8968319 AAATGTTGATAAATAAATAATT
1 AAATGTT--TAAATAAATAATT
8968341 AA
1 AA
8968343 TTAATTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 7 0.35
21 8 0.40
22 5 0.25
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (20 bp):
AAATGTTTAAATAAATAATT
Found at i:8970424 original size:21 final size:21
Alignment explanation
Indices: 8970399--8970472 Score: 71
Period size: 21 Copynumber: 3.5 Consensus size: 21
8970389 AGTGCTAAAT
8970399 TGAAACCCATAAGGGTTGAA-
1 TGAAACCCATAAGGGTTGAAC
* *
8970419 TGGAAACTCAT-AGGAGCTGAAC
1 T-GAAACCCATAAGG-GTTGAAC
*
8970441 TGAAACCCATAAGGGTTAAAC
1 TGAAACCCATAAGGGTTGAAC
* *
8970462 AGAAACTCATA
1 TGAAACCCATA
8970473 TGAGTTAAAC
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
20 4 0.09
21 35 0.81
22 4 0.09
ACGTcount: A:0.42, C:0.18, G:0.22, T:0.19
Consensus pattern (21 bp):
TGAAACCCATAAGGGTTGAAC
Found at i:8970479 original size:21 final size:21
Alignment explanation
Indices: 8970421--8970486 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
8970411 GGGTTGAATG
* * * *
8970421 GAAACTCATAGGAGCTGAACT
1 GAAACTCATAAGAGTTAAACA
* *
8970442 GAAACCCATAAGGGTTAAACA
1 GAAACTCATAAGAGTTAAACA
*
8970463 GAAACTCATATGAGTTAAACA
1 GAAACTCATAAGAGTTAAACA
8970484 GAA
1 GAA
8970487 GCTCGTGAGA
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.45, C:0.17, G:0.20, T:0.18
Consensus pattern (21 bp):
GAAACTCATAAGAGTTAAACA
Found at i:8970592 original size:24 final size:24
Alignment explanation
Indices: 8970558--8970605 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
8970548 TACTTGGGTA
* *
8970558 ATTTACTGTCAATTCATCCTTTGC
1 ATTTACCGTCAATTCATCATTTGC
8970582 ATTTACCGTCAATTCATCATTTGC
1 ATTTACCGTCAATTCATCATTTGC
8970606 CATAAGAACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.23, C:0.25, G:0.08, T:0.44
Consensus pattern (24 bp):
ATTTACCGTCAATTCATCATTTGC
Found at i:8973290 original size:51 final size:51
Alignment explanation
Indices: 8973205--8973394 Score: 233
Period size: 51 Copynumber: 3.7 Consensus size: 51
8973195 CAATGTTATC
* *
8973205 CGGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCAATACCATT
1 CGGTACACATAGTAGCCTACACATAGTACTACACATGTGACCAATACTATT
* * * * *
8973256 CGGTGCACGTAGTAGCCTGCACATAGTACTACACACGTGACCAA-AGCTATC
1 CGGTACACATAGTAGCCTACACATAGTACTACACATGTGACCAATA-CTATT
* *
8973307 CGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC-ATAACTATT
1 CGGTACACATAGTAGCCTACACATAGTACTACACATGTGACCAAT-ACTATT
* *
8973358 -GTATACTCATAGTAGCCTACACATAGTACTACACATG
1 CG-GTACACATAGTAGCCTACACATAGTACTACACATG
8973395 AGTTCTCATG
Statistics
Matches: 119, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
50 3 0.03
51 115 0.97
52 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (51 bp):
CGGTACACATAGTAGCCTACACATAGTACTACACATGTGACCAATACTATT
Found at i:8973342 original size:26 final size:25
Alignment explanation
Indices: 8973310--8973393 Score: 66
Period size: 26 Copynumber: 3.3 Consensus size: 25
8973300 AGCTATCCGG
8973310 TACACATAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCT-CACTTAGTAC
* *
8973336 TACACAT-GT-GACCATAACTATTGTA-
1 TACACATAGTAG-CC-TCACT-TAGTAC
* *
8973361 TACTCATAGTAGCCTACACATAGTAC
1 TACACATAGTAGCCT-CACTTAGTAC
8973387 TACACAT
1 TACACAT
8973394 GAGTTCTCAT
Statistics
Matches: 44, Mismatches: 7, Indels: 14
0.68 0.11 0.22
Matches are distributed among these distances:
24 1 0.02
25 18 0.41
26 24 0.55
27 1 0.02
ACGTcount: A:0.35, C:0.25, G:0.12, T:0.29
Consensus pattern (25 bp):
TACACATAGTAGCCTCACTTAGTAC
Found at i:8973371 original size:102 final size:102
Alignment explanation
Indices: 8973201--8973392 Score: 289
Period size: 102 Copynumber: 1.9 Consensus size: 102
8973191 TGGTCAATGT
* * *
8973201 TATCCGGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCAATACCATTCGGTGCACGT
1 TATCCGGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCAATACCATTCGATACACAT
*
8973266 AGTAGCCTGCACATAGTACTACACACGTGACCAAAGC
66 AGTAGCCTACACATAGTACTACACACGTGACCAAAGC
* * *
8973303 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC-ATAACTATT-GTATACTC
1 TATCCGGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCAAT-ACCATTCG-ATACAC
8973366 ATAGTAGCCTACACATAGTACTACACA
64 ATAGTAGCCTACACATAGTACTACACA
8973393 TGAGTTCTCA
Statistics
Matches: 81, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
101 3 0.04
102 78 0.96
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (102 bp):
TATCCGGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCAATACCATTCGATACACAT
AGTAGCCTACACATAGTACTACACACGTGACCAAAGC
Found at i:8976142 original size:51 final size:50
Alignment explanation
Indices: 8976074--8976220 Score: 189
Period size: 51 Copynumber: 3.0 Consensus size: 50
8976064 ATCACATTTA
8976074 TCACTTGTCACTAATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
1 TCACTTGTCA-TAATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
* * *
8976125 TCACTTGTCATTAATCAGATAAGTGTAGTTAAAGCTATCACTTATTACTTG
1 TCACTTGTCA-TAATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
* *
8976176 TCAC-TG-----ATCAGATAAGTGTATCTAAAGCTACCATTTATCACTTG
1 TCACTTGTCATAATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
8976220 T
1 T
8976221 TACTGATCAA
Statistics
Matches: 87, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
44 34 0.39
50 2 0.02
51 51 0.59
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (50 bp):
TCACTTGTCATAATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
Found at i:8976164 original size:44 final size:44
Alignment explanation
Indices: 8976116--8976229 Score: 140
Period size: 44 Copynumber: 2.6 Consensus size: 44
8976106 AGCTACCACT
* *
8976116 TATCACTTGTCACTTGTCATTAATCAGATAAGTGTAGT-TAAAGC
1 TATCACTTATCACTTGTCACTAATCAGATAAGTGTA-TCTAAAGC
* *
8976160 TATCACTTATTACTTGTCACTGATCAGATAAGTGTATCTAAAGC
1 TATCACTTATCACTTGTCACTAATCAGATAAGTGTATCTAAAGC
* * * *
8976204 TACCATTTATCACTTGTTACTGATCA
1 TATCACTTATCACTTGTCACTAATCA
8976230 AAAGTACTCA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
43 1 0.02
44 60 0.98
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (44 bp):
TATCACTTATCACTTGTCACTAATCAGATAAGTGTATCTAAAGC
Found at i:8979627 original size:9 final size:9
Alignment explanation
Indices: 8979609--8979694 Score: 59
Period size: 9 Copynumber: 9.6 Consensus size: 9
8979599 GAGGCATGCT
8979609 CAGCAACAG
1 CAGCAACAG
*
8979618 CAGCATCAG
1 CAGCAACAG
* *
8979627 CATCAGCAG
1 CAGCAACAG
* *
8979636 CAACAACAA
1 CAGCAACAG
8979645 CAGCAACAG
1 CAGCAACAG
* *
8979654 C-GACAGCAA
1 CAG-CAACAG
8979663 CAGCAACAG
1 CAGCAACAG
*
8979672 CCA-CAACAC
1 -CAGCAACAG
*
8979681 CAGCAGCAG
1 CAGCAACAG
8979690 CAGCA
1 CAGCA
8979695 GCAAAGAGAA
Statistics
Matches: 58, Mismatches: 15, Indels: 8
0.72 0.19 0.10
Matches are distributed among these distances:
8 3 0.05
9 52 0.90
10 3 0.05
ACGTcount: A:0.43, C:0.36, G:0.19, T:0.02
Consensus pattern (9 bp):
CAGCAACAG
Found at i:8979628 original size:15 final size:15
Alignment explanation
Indices: 8979608--8979649 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
8979598 AGAGGCATGC
8979608 TCAGCAACAGCAGCA
1 TCAGCAACAGCAGCA
*
8979623 TCAGCATCAGCAGCA
1 TCAGCAACAGCAGCA
* *
8979638 ACAACAACAGCA
1 TCAGCAACAGCA
8979650 ACAGCGACAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.43, C:0.33, G:0.17, T:0.07
Consensus pattern (15 bp):
TCAGCAACAGCAGCA
Found at i:8979653 original size:6 final size:6
Alignment explanation
Indices: 8979609--8979698 Score: 72
Period size: 6 Copynumber: 15.0 Consensus size: 6
8979599 GAGGCATGCT
* * * * * * *
8979609 CAGCAA CAGCAG CATCAG CATCAG CAGCAA CAACAA CAGCAA CAGCGA
1 CAGCAA CAGCAA CAGCAA CAGCAA CAGCAA CAGCAA CAGCAA CAGCAA
* * * * *
8979657 CAGCAA CAGCAA CAGCCA CAACAC CAGCAG CAGCAG CAGCAA
1 CAGCAA CAGCAA CAGCAA CAGCAA CAGCAA CAGCAA CAGCAA
8979699 AGAGAAGGGA
Statistics
Matches: 69, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 69 1.00
ACGTcount: A:0.43, C:0.36, G:0.19, T:0.02
Consensus pattern (6 bp):
CAGCAA
Found at i:9000456 original size:10 final size:11
Alignment explanation
Indices: 9000441--9000501 Score: 70
Period size: 11 Copynumber: 5.5 Consensus size: 11
9000431 CAACTAAATC
9000441 ATTTCTCTC-A
1 ATTTCTCTCAA
*
9000451 ATTTCTCTCTA
1 ATTTCTCTCAA
9000462 ATATTCTCTCAA
1 AT-TTCTCTCAA
*
9000474 ATTCCTCTCAA
1 ATTTCTCTCAA
*
9000485 ATTCCTCTCAA
1 ATTTCTCTCAA
*
9000496 TTTTCT
1 ATTTCT
9000502 ATTTAAAAGA
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
10 9 0.20
11 26 0.58
12 10 0.22
ACGTcount: A:0.23, C:0.30, G:0.00, T:0.48
Consensus pattern (11 bp):
ATTTCTCTCAA
Found at i:9000550 original size:22 final size:22
Alignment explanation
Indices: 9000520--9000561 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
9000510 GAGCTTCAAA
*
9000520 TTTTTAATTATTTTTAAAATAG
1 TTTTAAATTATTTTTAAAATAG
* *
9000542 TTTTAAATTTTTTTTTAAAT
1 TTTTAAATTATTTTTAAAAT
9000562 TTTTTTTTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (22 bp):
TTTTAAATTATTTTTAAAATAG
Found at i:9000557 original size:12 final size:12
Alignment explanation
Indices: 9000542--9000573 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
9000532 TTTAAAATAG
9000542 TTTTAAATTTTT
1 TTTTAAATTTTT
9000554 TTTTAAATTTTT
1 TTTTAAATTTTT
9000566 TTTTAAAT
1 TTTTAAAT
9000574 CATAAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (12 bp):
TTTTAAATTTTT
Found at i:9002343 original size:18 final size:18
Alignment explanation
Indices: 9002320--9002357 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
9002310 AGATGATGCA
* *
9002320 GTATCCTAGCCCTTTTAT
1 GTATCCTAACCCTTATAT
9002338 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
9002356 GT
1 GT
9002358 TTCATTTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:9002836 original size:49 final size:49
Alignment explanation
Indices: 9002782--9002951 Score: 304
Period size: 49 Copynumber: 3.5 Consensus size: 49
9002772 GTTTATATTA
9002782 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTG
1 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTG
*
9002831 ATGTAATAAAATACAAAATAGTTTATTTTGAATAATTTGATATTATTTG
1 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTG
* *
9002880 ATATAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTC
1 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTG
*
9002929 ATTTAATAAAATACAAAATAGTT
1 ATGTAATAAAATACAAAATAGTT
9002952 AATATTCTTA
Statistics
Matches: 116, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 116 1.00
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.45
Consensus pattern (49 bp):
ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTG
Found at i:9005966 original size:106 final size:105
Alignment explanation
Indices: 9005782--9005992 Score: 350
Period size: 106 Copynumber: 2.0 Consensus size: 105
9005772 CGTGGGAGCG
* * **
9005782 ATTTCAGAAATTCTTTTGATAAAGCATCCTGCTTAAAGCGTTTTTATACTATTTGCTTTGAAACG
1 ATTTCAGAAACTCTTCTGATAAAGCATCCTGCTTAAAGCGTTTTTATACTATTTGCTCAGAAACG
*
9005847 TCAACTCGAAATTATTTTTTCAGGACCTACTGTAGCAAAA
66 TCAACTCGAAATTATTTTTTCAGGACCTACTATAGCAAAA
* *
9005887 ATTTCAGAAACTCTTCTGATAAAGCATCCTGCTTTAAGTGTTTTTTATACTATTTGCTCAGAAAC
1 ATTTCAGAAACTCTTCTGATAAAGCATCCTGCTTAAAGCG-TTTTTATACTATTTGCTCAGAAAC
9005952 GTCAACTCGAAATTATTTTTTCAGGACCTACTATAGCAAAA
65 GTCAACTCGAAATTATTTTTTCAGGACCTACTATAGCAAAA
9005993 GCGCGTCCAC
Statistics
Matches: 98, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
105 36 0.37
106 62 0.63
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (105 bp):
ATTTCAGAAACTCTTCTGATAAAGCATCCTGCTTAAAGCGTTTTTATACTATTTGCTCAGAAACG
TCAACTCGAAATTATTTTTTCAGGACCTACTATAGCAAAA
Found at i:9006114 original size:125 final size:125
Alignment explanation
Indices: 9005887--9006141 Score: 420
Period size: 125 Copynumber: 2.0 Consensus size: 125
9005877 TGTAGCAAAA
* *
9005887 ATTTCAGAAACTCTTCTGATAAAGCATCCTGCTTTAAGTGTTTTTTATACTATTTGCTCAGAAAC
1 ATTTCAGAAACTCTTCTGATAAAGCATCCTGCTTGAAGAGTTTTTTATACTATTTGCTCAGAAAC
* * * *
9005952 GTCAACTCGAAATTATTTTTTCAGGACCTACTATAGCAAAAGCGCGTCCACGTAGGAGCG
66 GTCAACTCAAAATTATTTTTTCAGAACCTACTATAGCAAAAACGCATCCACGTAGGAGCG
* *
9006012 ATTTCAGAAATTCTTCTGATAAAGCATCTTGCTTGAAGAGTTTTTTATACTATTTGCTCAGAAAC
1 ATTTCAGAAACTCTTCTGATAAAGCATCCTGCTTGAAGAGTTTTTTATACTATTTGCTCAGAAAC
* *
9006077 GTCAACTCAAAATTATTTTTTCAGAACCTACTGTAGCAAAAACGCATCCACGTGGGAGCG
66 GTCAACTCAAAATTATTTTTTCAGAACCTACTATAGCAAAAACGCATCCACGTAGGAGCG
9006137 ATTTC
1 ATTTC
9006142 CTTAATAAAT
Statistics
Matches: 120, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
125 120 1.00
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (125 bp):
ATTTCAGAAACTCTTCTGATAAAGCATCCTGCTTGAAGAGTTTTTTATACTATTTGCTCAGAAAC
GTCAACTCAAAATTATTTTTTCAGAACCTACTATAGCAAAAACGCATCCACGTAGGAGCG
Found at i:9006858 original size:16 final size:17
Alignment explanation
Indices: 9006836--9006876 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
9006826 CTTTTGTAGG
*
9006836 ATTAATATATTAAAATT
1 ATTAATATATGAAAATT
*
9006853 -TTAATA-ATGAAATTT
1 ATTAATATATGAAAATT
9006868 ATTAATATA
1 ATTAATATA
9006877 ATTATATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
15 7 0.35
16 12 0.60
17 1 0.05
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (17 bp):
ATTAATATATGAAAATT
Found at i:9023409 original size:18 final size:18
Alignment explanation
Indices: 9023386--9023440 Score: 85
Period size: 18 Copynumber: 3.1 Consensus size: 18
9023376 GAGGGACGTG
9023386 GAGGGAGAGGACA-GGGGA
1 GAGGGAGAGGA-AGGGGGA
9023404 GAGGGAGAGGAAGGGGGA
1 GAGGGAGAGGAAGGGGGA
*
9023422 GAGGGAGAGGGAGGGGGA
1 GAGGGAGAGGAAGGGGGA
9023440 G
1 G
9023441 GTTCGGCTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
17 1 0.03
18 34 0.97
ACGTcount: A:0.31, C:0.02, G:0.67, T:0.00
Consensus pattern (18 bp):
GAGGGAGAGGAAGGGGGA
Found at i:9023441 original size:6 final size:6
Alignment explanation
Indices: 9023386--9023440 Score: 58
Period size: 6 Copynumber: 9.2 Consensus size: 6
9023376 GAGGGACGTG
* * *
9023386 GAGGGA GA-GGA CAGGGGA GAGGGA GAGGAA GGGGGA GAGGGA GAGGGA
1 GAGGGA GAGGGA GA-GGGA GAGGGA GAGGGA GAGGGA GAGGGA GAGGGA
*
9023434 GGGGGA G
1 GAGGGA G
9023441 GTTCGGCTAA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
5 4 0.10
6 32 0.80
7 4 0.10
ACGTcount: A:0.31, C:0.02, G:0.67, T:0.00
Consensus pattern (6 bp):
GAGGGA
Found at i:9024294 original size:17 final size:19
Alignment explanation
Indices: 9024272--9024306 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
9024262 ATTATTCTTC
9024272 TTAAAATA-TT-TTTTTTT
1 TTAAAATACTTCTTTTTTT
9024289 TTAAAATACTTCTTTTTT
1 TTAAAATACTTCTTTTTT
9024307 CAGATATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 2 0.12
19 6 0.38
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.66
Consensus pattern (19 bp):
TTAAAATACTTCTTTTTTT
Found at i:9024938 original size:21 final size:21
Alignment explanation
Indices: 9024912--9024966 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
9024902 AACAGCGGTG
*
9024912 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGGTACTGTA
*
9024933 GCGGTGAGATTGGGTACTGTA
1 GCGGTGAGATTAGGTACTGTA
9024954 GCGGTGAGATTAG
1 GCGGTGAGATTAG
9024967 AAACAATGGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.22, C:0.09, G:0.40, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGGTACTGTA
Found at i:9032504 original size:19 final size:19
Alignment explanation
Indices: 9032480--9032572 Score: 111
Period size: 21 Copynumber: 4.8 Consensus size: 19
9032470 CATATGGAAG
9032480 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
9032499 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
9032518 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
9032539 GATATATACAATCTTAGA-A-
1 G--ATATGCAATCTTAGATAT
*
9032558 GAT-TGTAATCTTAGA
1 GATATGCAATCTTAGA
9032573 GATTTAATTT
Statistics
Matches: 69, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
16 10 0.14
17 2 0.03
19 21 0.30
20 1 0.01
21 35 0.51
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:9032526 original size:21 final size:21
Alignment explanation
Indices: 9032481--9032556 Score: 129
Period size: 21 Copynumber: 3.7 Consensus size: 21
9032471 ATATGGAAGG
9032481 ATATGCAATCTTAGATATG--
1 ATATGCAATCTTAGATATGAT
9032500 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
9032521 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
*
9032542 ATATACAATCTTAGA
1 ATATGCAATCTTAGA
9032557 AGATTGTAAT
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
19 19 0.35
21 35 0.65
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:9033020 original size:3 final size:3
Alignment explanation
Indices: 9033012--9033055 Score: 54
Period size: 3 Copynumber: 14.3 Consensus size: 3
9033002 ATTAATTTTG
*
9033012 TTA TTA TTA TTT TTA TTA TTA -TA TTA TATA TTA TTAA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TT-A TTA TTA T
9033056 ACCTACATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
2 2 0.06
3 28 0.78
4 6 0.17
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:9033020 original size:15 final size:15
Alignment explanation
Indices: 9032996--9033055 Score: 56
Period size: 15 Copynumber: 4.2 Consensus size: 15
9032986 GTTTTTAGTC
9032996 TATT-TTATTAATTT
1 TATTATTATTAATTT
* *
9033010 TGTTATTATTATTTT
1 TATTATTATTAATTT
*
9033025 TATTATTA-T-ATTA
1 TATTATTATTAATTT
9033038 TA-TATTATTAATTAT
1 TATTATTATTAATT-T
9033053 TAT
1 TAT
9033056 ACCTACATAT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
12 5 0.14
13 5 0.14
14 7 0.20
15 18 0.51
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (15 bp):
TATTATTATTAATTT
Found at i:9037929 original size:4 final size:4
Alignment explanation
Indices: 9037920--9037963 Score: 65
Period size: 4 Copynumber: 11.2 Consensus size: 4
9037910 CACTTTGTAC
9037920 TAAA TAAA TAACA T--A TAAA TAAA TAAA TAAA TAAA TAAA TAAA T
1 TAAA TAAA TAA-A TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA T
9037964 TAAGAGCTCT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
2 2 0.05
4 33 0.89
5 2 0.05
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.27
Consensus pattern (4 bp):
TAAA
Found at i:9042551 original size:21 final size:23
Alignment explanation
Indices: 9042507--9042552 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 23
9042497 TGATATATAC
*
9042507 AATCTTAGAAGATATGATTTTGT
1 AATCTTAGAAGATATGAATTTGT
*
9042530 AATCTTA-AAGAT-TTAATTTGT
1 AATCTTAGAAGATATGAATTTGT
9042551 AA
1 AA
9042553 ATACCTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 9 0.43
22 5 0.24
23 7 0.33
ACGTcount: A:0.39, C:0.04, G:0.13, T:0.43
Consensus pattern (23 bp):
AATCTTAGAAGATATGAATTTGT
Found at i:9042731 original size:19 final size:21
Alignment explanation
Indices: 9042707--9042745 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
9042697 TGTTTTCTTT
*
9042707 TTTTTTTCTT-TTT-CGATTA
1 TTTTTTACTTATTTACGATTA
9042726 TTTTTTACTTATTTACGATT
1 TTTTTTACTTATTTACGATT
9042746 TTAAAAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.69
Consensus pattern (21 bp):
TTTTTTACTTATTTACGATTA
Found at i:9042976 original size:3 final size:3
Alignment explanation
Indices: 9042968--9043011 Score: 54
Period size: 3 Copynumber: 14.3 Consensus size: 3
9042958 ATTAATTTTG
*
9042968 TTA TTA TTA TTT TTA TTA TTA -TA TTA TATA TTA TTAA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TT-A TTA TTA T
9043012 ACCTACATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
2 2 0.06
3 28 0.78
4 6 0.17
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:9042976 original size:15 final size:15
Alignment explanation
Indices: 9042952--9043011 Score: 56
Period size: 15 Copynumber: 4.2 Consensus size: 15
9042942 GTTTTTAGTC
9042952 TATT-TTATTAATTT
1 TATTATTATTAATTT
* *
9042966 TGTTATTATTATTTT
1 TATTATTATTAATTT
*
9042981 TATTATTA-T-ATTA
1 TATTATTATTAATTT
9042994 TA-TATTATTAATTAT
1 TATTATTATTAATT-T
9043009 TAT
1 TAT
9043012 ACCTACATAT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
12 5 0.14
13 5 0.14
14 7 0.20
15 18 0.51
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (15 bp):
TATTATTATTAATTT
Found at i:9046492 original size:18 final size:18
Alignment explanation
Indices: 9046466--9046500 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
9046456 AAAAAGTATT
*
9046466 TTTAGAAAATTTAAAAAC
1 TTTAAAAAATTTAAAAAC
9046484 TTTAAAAAATTTAAAAA
1 TTTAAAAAATTTAAAAA
9046501 AAGTATTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (18 bp):
TTTAAAAAATTTAAAAAC
Found at i:9046501 original size:9 final size:9
Alignment explanation
Indices: 9046426--9046501 Score: 55
Period size: 9 Copynumber: 8.0 Consensus size: 9
9046416 AAAAAAGTAT
9046426 TTTAAAAATA
1 TTTAAAAA-A
*
9046436 TTT-TAAAA
1 TTTAAAAAA
*
9046444 TTAAAAAAA
1 TTTAAAAAA
*
9046453 TTAAAAAAGTA
1 TTTAAAAA--A
*
9046464 TTTTTAGAAAA
1 --TTTAAAAAA
*
9046475 TTTAAAAAC
1 TTTAAAAAA
9046484 TTTAAAAAA
1 TTTAAAAAA
9046493 TTTAAAAAA
1 TTTAAAAAA
9046502 AGTATTTTAA
Statistics
Matches: 53, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
8 3 0.06
9 39 0.74
10 3 0.06
11 2 0.04
13 6 0.11
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.36
Consensus pattern (9 bp):
TTTAAAAAA
Found at i:9046513 original size:11 final size:11
Alignment explanation
Indices: 9046499--9046524 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
9046489 AAAATTTAAA
9046499 AAAAGTATTTT
1 AAAAGTATTTT
9046510 AAAAGTATTTT
1 AAAAGTATTTT
9046521 AAAA
1 AAAA
9046525 TAAAAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (11 bp):
AAAAGTATTTT
Found at i:9048446 original size:33 final size:32
Alignment explanation
Indices: 9048401--9048550 Score: 113
Period size: 33 Copynumber: 4.6 Consensus size: 32
9048391 TAATGTTTAA
* *
9048401 ATGTAAGACCATAGTTGGGCTATGGCATTCTG
1 ATGTAAGACCATAGCTGGGCTATGACATTCTG
* * * * *
9048433 ATGATAAGACCATAACTGGGTTATGACACTATAA
1 ATG-TAAGACCATAGCTGGGCTATGACATTCT-G
* * * * *
9048467 ATGTAAGACCATGGCAGGGCCATGGCAATGCATG
1 ATGTAAGACCATAGCTGGGCTATGAC-ATTC-TG
*
9048501 -TGTAAGACCATAGCTGAGCTATGACATTCTG
1 ATGTAAGACCATAGCTGGGCTATGACATTCTG
* *
9048532 ATGATAAGATCATAACTGG
1 ATG-TAAGACCATAGCTGG
9048551 TTTTGGCATT
Statistics
Matches: 86, Mismatches: 26, Indels: 11
0.70 0.21 0.09
Matches are distributed among these distances:
31 2 0.02
32 8 0.09
33 71 0.83
34 4 0.05
35 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.26
Consensus pattern (32 bp):
ATGTAAGACCATAGCTGGGCTATGACATTCTG
Found at i:9048507 original size:66 final size:66
Alignment explanation
Indices: 9048398--9048526 Score: 154
Period size: 66 Copynumber: 2.0 Consensus size: 66
9048388 TGGTAATGTT
** * * * *
9048398 TAAATGTAAGACCATAGTTGGGCTATGGCATTCTGATGATAAGACCATAACTGGGTTATGACACT
1 TAAATGTAAGACCATAGCAGGGCCATGGCATGCTGATGATAAGACCATAACTGAGCTATGACACT
9048463 A
66 A
* *
9048464 TAAATGTAAGACCATGGCAGGGCCATGGCAATGCATG-TG-TAAGACCATAGCTGAGCTATGACA
1 TAAATGTAAGACCATAGCAGGGCCATGGC-ATGC-TGATGATAAGACCATAACTGAGCTATGACA
9048527 TTCTGATGAT
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
66 46 0.87
67 5 0.09
68 2 0.04
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (66 bp):
TAAATGTAAGACCATAGCAGGGCCATGGCATGCTGATGATAAGACCATAACTGAGCTATGACACT
A
Found at i:9048621 original size:98 final size:99
Alignment explanation
Indices: 9048402--9048621 Score: 336
Period size: 98 Copynumber: 2.2 Consensus size: 99
9048392 AATGTTTAAA
* *
9048402 TGTAAGACCATAGTTGGGCTATGGCATTCTGATGATAAGACCATAACTGGGTTATGACACTATAA
1 TGTAAGACCATAGTTGGACTATGACATTCTGATGATAAGACCATAACTGGGTTATGACACTATAA
9048467 ATGTAAGACCATGGCAGGGCCATGGCAATGCATG
66 ATGTAAGACCATGGCAGGGCCATGGCAATGCATG
* * * * *
9048501 TGTAAGACCATAGCT-GAGCTATGACATTCTGATGATAAGATCATAACT-GGTTTTGGCATTATA
1 TGTAAGACCATAGTTGGA-CTATGACATTCTGATGATAAGACCATAACTGGGTTATGACACTATA
* *
9048564 AATGTAAGACTATGGTAGGGCCATGGCAATGCATG
65 AATGTAAGACCATGGCAGGGCCATGGCAATGCATG
9048599 TGTAAGACCATAGTTGGACTATG
1 TGTAAGACCATAGTTGGACTATG
9048622 GCACAAAAAG
Statistics
Matches: 109, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
98 65 0.60
99 44 0.40
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.28
Consensus pattern (99 bp):
TGTAAGACCATAGTTGGACTATGACATTCTGATGATAAGACCATAACTGGGTTATGACACTATAA
ATGTAAGACCATGGCAGGGCCATGGCAATGCATG
Found at i:9048741 original size:24 final size:19
Alignment explanation
Indices: 9048696--9048734 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
9048686 GACTTATGTG
9048696 ATTGAATTGAAAGATTTAT
1 ATTGAATTGAAAGATTTAT
9048715 ATTGAATTGAAAGATTTAT
1 ATTGAATTGAAAGATTTAT
9048734 A
1 A
9048735 GATTATTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.15, T:0.41
Consensus pattern (19 bp):
ATTGAATTGAAAGATTTAT
Found at i:9051988 original size:41 final size:41
Alignment explanation
Indices: 9051943--9052145 Score: 250
Period size: 41 Copynumber: 5.0 Consensus size: 41
9051933 TTGTATAAAA
* * * * * * *
9051943 CACCGGCATAAAGCCTGCCAGGCACAAAGCCCGATACATTC
1 CACCGGCACAAAGCCTGCTAGACATAAAGTCTGATACATTT
* *
9051984 CACCGGCACAAAGCCTACTAGACATAAAGTCTGATAGATTT
1 CACCGGCACAAAGCCTGCTAGACATAAAGTCTGATACATTT
9052025 CACCGGCACAAAGCCTGCTAGACATAAAGTCTGATACATTT
1 CACCGGCACAAAGCCTGCTAGACATAAAGTCTGATACATTT
*
9052066 CACCGGCACTAAGCCTGCTAGACATAAAGTCTGAAGTA-A-TT
1 CACCGGCACAAAGCCTGCTAGACATAAAGTCTG-A-TACATTT
* *
9052107 CACCGGCATC-AAGCCTGCTAGACGTAAAGTCTGAAACAT
1 CACCGGCA-CAAAGCCTGCTAGACATAAAGTCTGATACAT
9052146 CTTATTTTCA
Statistics
Matches: 143, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
39 1 0.01
40 2 0.01
41 135 0.94
42 3 0.02
43 2 0.01
ACGTcount: A:0.34, C:0.28, G:0.19, T:0.19
Consensus pattern (41 bp):
CACCGGCACAAAGCCTGCTAGACATAAAGTCTGATACATTT
Found at i:9052826 original size:17 final size:16
Alignment explanation
Indices: 9052793--9052827 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
9052783 ATCTAATAAT
9052793 TTATACACGTATATAC
1 TTATACACGTATATAC
*
9052809 TTATACATCGTTTATAC
1 TTATACA-CGTATATAC
9052826 TT
1 TT
9052828 CAACTAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.31, C:0.17, G:0.06, T:0.46
Consensus pattern (16 bp):
TTATACACGTATATAC
Found at i:9053741 original size:34 final size:35
Alignment explanation
Indices: 9053686--9053754 Score: 97
Period size: 34 Copynumber: 2.0 Consensus size: 35
9053676 ATTTGTTTAA
* *
9053686 TTATAATATTATAATATACTATATATTATA-ACAT
1 TTATAATAATATAATAAACTATATATTATACACAT
9053720 TTATAATTAATATAA-AAACTATATATTATACACAT
1 TTATAA-TAATATAATAAACTATATATTATACACAT
9053755 AATGCCGCCC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
34 20 0.65
35 11 0.35
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.43
Consensus pattern (35 bp):
TTATAATAATATAATAAACTATATATTATACACAT
Found at i:9062292 original size:3 final size:3
Alignment explanation
Indices: 9062280--9062337 Score: 68
Period size: 3 Copynumber: 20.3 Consensus size: 3
9062270 TTTAGGGTTT
*
9062280 AAG AAG -AG AAG AAA AAG AA- AA- AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
* *
9062325 GAG AAG GAG AAG A
1 AAG AAG AAG AAG A
9062338 GAAAAAATGG
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
2 6 0.13
3 41 0.87
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:9062947 original size:3 final size:3
Alignment explanation
Indices: 9062941--9062971 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
9062931 TTTTACAGTA
9062941 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
9062972 TGTTATTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:9067835 original size:19 final size:20
Alignment explanation
Indices: 9067798--9067835 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
9067788 ACCTGAAAAT
* *
9067798 GCATTTTAATGACACTCAAA
1 GCATGTTAATGACAATCAAA
9067818 GCATGTTAA-GACAATCAA
1 GCATGTTAATGACAATCAA
9067836 CCTAAAACCT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.42, C:0.18, G:0.13, T:0.26
Consensus pattern (20 bp):
GCATGTTAATGACAATCAAA
Found at i:9070670 original size:30 final size:29
Alignment explanation
Indices: 9070590--9070663 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
9070580 AATTCATCTC
*
9070590 GTCAAAATAATTTTTTTAGAACACATTAT
1 GTCAAAATTATTTTTTTAGAACACATTAT
* * *
9070619 GTTAAATTTATTTTTTTAGAACCCA-TATT
1 GTCAAAATTATTTTTTTAGAACACATTA-T
9070648 GTCAAAATTATTTTTT
1 GTCAAAATTATTTTTT
9070664 CCAGAACAAC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.05
29 36 0.95
ACGTcount: A:0.35, C:0.09, G:0.07, T:0.49
Consensus pattern (29 bp):
GTCAAAATTATTTTTTTAGAACACATTAT
Found at i:9104675 original size:22 final size:24
Alignment explanation
Indices: 9104632--9104675 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
9104622 CATTATTTTA
*
9104632 ATATTTATTATAGAGTTGTATTAT
1 ATATTTAGTATAGAGTTGTATTAT
9104656 ATATTTAGTATAG-GTT-TATT
1 ATATTTAGTATAGAGTTGTATT
9104676 TTTATCTGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 3 0.16
24 12 0.63
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.55
Consensus pattern (24 bp):
ATATTTAGTATAGAGTTGTATTAT
Found at i:9115367 original size:13 final size:13
Alignment explanation
Indices: 9115349--9115378 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
9115339 ATAAACAGTA
9115349 AAAGAATTATATC
1 AAAGAATTATATC
9115362 AAAGAATTATATC
1 AAAGAATTATATC
9115375 AAAG
1 AAAG
9115379 GAGGAGTAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.57, C:0.07, G:0.10, T:0.27
Consensus pattern (13 bp):
AAAGAATTATATC
Found at i:9119631 original size:16 final size:15
Alignment explanation
Indices: 9119594--9119632 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 15
9119584 CATTTCAAAC
9119594 TTAAATTTTTTAAAAT
1 TTAAA-TTTTTAAAAT
9119610 TATAAATTTTTAAAAT
1 T-TAAATTTTTAAAAT
9119626 ATTAAAT
1 -TTAAAT
9119633 AAAATTCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
TTAAATTTTTAAAAT
Found at i:9120684 original size:28 final size:29
Alignment explanation
Indices: 9120652--9120706 Score: 94
Period size: 28 Copynumber: 1.9 Consensus size: 29
9120642 CTTTTTACTT
*
9120652 TTCCCTCAAAACTTTTACTCCT-TCCCAC
1 TTCCCCCAAAACTTTTACTCCTCTCCCAC
9120680 TTCCCCCAAAACTTTTACTCCTCTCCC
1 TTCCCCCAAAACTTTTACTCCTCTCCC
9120707 CTCCCAACCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 21 0.84
29 4 0.16
ACGTcount: A:0.20, C:0.45, G:0.00, T:0.35
Consensus pattern (29 bp):
TTCCCCCAAAACTTTTACTCCTCTCCCAC
Found at i:9123030 original size:31 final size:31
Alignment explanation
Indices: 9122992--9123061 Score: 113
Period size: 31 Copynumber: 2.3 Consensus size: 31
9122982 GTTTGCCCAC
9122992 TTTAGTCCATAACGTTATCAGACATTCTCAA
1 TTTAGTCCATAACGTTATCAGACATTCTCAA
* *
9123023 TTTAGTCCCTAATGTTATCAGACATTCTCAA
1 TTTAGTCCATAACGTTATCAGACATTCTCAA
*
9123054 TTCAGTCC
1 TTTAGTCC
9123062 TTTGGACGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.37
Consensus pattern (31 bp):
TTTAGTCCATAACGTTATCAGACATTCTCAA
Found at i:9123159 original size:20 final size:21
Alignment explanation
Indices: 9123136--9123180 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
9123126 ATAAAAACCC
*
9123136 TTAAAAATTGG-AAAAAATTA
1 TTAAAAATAGGAAAAAAATTA
9123156 TT-AAAATAGGAAAAAAATTA
1 TTAAAAATAGGAAAAAAATTA
9123176 -TAAAA
1 TTAAAA
9123181 TTACAATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.27
Consensus pattern (21 bp):
TTAAAAATAGGAAAAAAATTA
Found at i:9123161 original size:19 final size:19
Alignment explanation
Indices: 9123139--9123182 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
9123129 AAAACCCTTA
9123139 AAAATTGG-AAAAAATTATT
1 AAAATTGGAAAAAAATTA-T
*
9123158 AAAATAGGAAAAAAATTAT
1 AAAATTGGAAAAAAATTAT
9123177 AAAATT
1 AAAATT
9123183 ACAATAAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.27
Consensus pattern (19 bp):
AAAATTGGAAAAAAATTAT
Found at i:9123433 original size:15 final size:16
Alignment explanation
Indices: 9123395--9123433 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
9123385 TACATAATGA
*
9123395 AAATAAT-ATTATTTC
1 AAATAATAATCATTTC
9123410 AAATAATAATCATTT-
1 AAATAATAATCATTTC
9123425 AAATAATAA
1 AAATAATAA
9123434 ATACCATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (16 bp):
AAATAATAATCATTTC
Found at i:9124295 original size:19 final size:18
Alignment explanation
Indices: 9124259--9124324 Score: 53
Period size: 19 Copynumber: 3.5 Consensus size: 18
9124249 TACAAAATTT
* *
9124259 ATTAAAAAATAGAGAAAAA
1 ATTATAAAATATA-AAAAA
*
9124278 ATTATAAAAT-TACTAAAA
1 ATTATAAAATATA-AAAAA
*
9124296 GTATATAAAATATAAAAAA
1 AT-TATAAAATATAAAAAA
9124315 ATTACTAAAA
1 ATTA-TAAAA
9124325 ACTTTTTAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
18 8 0.22
19 27 0.73
20 2 0.05
ACGTcount: A:0.67, C:0.03, G:0.05, T:0.26
Consensus pattern (18 bp):
ATTATAAAATATAAAAAA
Found at i:9125098 original size:72 final size:72
Alignment explanation
Indices: 9124985--9125120 Score: 229
Period size: 72 Copynumber: 1.9 Consensus size: 72
9124975 TCGGGTTTAG
*
9124985 AAAATGGGTCATGCCCAGTAAGTTAGGACACGATCTTTTCTTAATTCCCGAGATCGTTTAAAACT
1 AAAATGGATCATGCCCAGTAAGTTAGGACACGATCTTTTCTTAATTCCCGAGATCGTTTAAAACT
9125050 TGGGAAA
66 TGGGAAA
* *
9125057 AAAATGGATCATGCCCAGTAAGTTAGGACACGAT-TTCTTCTTAATTCCCGGGGTCGTTTAAAAC
1 AAAATGGATCATGCCCAGTAAGTTAGGACACGATCTT-TTCTTAATTCCCGAGATCGTTTAAAAC
9125121 ATGAGTTTGA
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
71 2 0.03
72 58 0.97
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (72 bp):
AAAATGGATCATGCCCAGTAAGTTAGGACACGATCTTTTCTTAATTCCCGAGATCGTTTAAAACT
TGGGAAA
Found at i:9125527 original size:25 final size:26
Alignment explanation
Indices: 9125499--9125553 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 26
9125489 AAAGAGATAT
9125499 ATATGTATATAGATATAAATTA-AAA
1 ATATGTATATAGATATAAATTATAAA
* * *
9125524 ATATGTATGTATATATGAATTATAAA
1 ATATGTATATAGATATAAATTATAAA
9125550 ATAT
1 ATAT
9125554 ATATTTTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 19 0.73
26 7 0.27
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (26 bp):
ATATGTATATAGATATAAATTATAAA
Found at i:9127201 original size:17 final size:18
Alignment explanation
Indices: 9127179--9127214 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
9127169 ATTTGATTTA
9127179 TAAAATTT-TAAAAATAT
1 TAAAATTTCTAAAAATAT
*
9127196 TAAAATTTCTAATAATAT
1 TAAAATTTCTAAAAATAT
9127214 T
1 T
9127215 TTTTATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (18 bp):
TAAAATTTCTAAAAATAT
Found at i:9127262 original size:20 final size:19
Alignment explanation
Indices: 9127239--9127285 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
9127229 GTAAATTTTA
9127239 GTATTTTTATAATGTTTATT
1 GTATTTTTATAAT-TTTATT
*
9127259 GTATTTTTATAATTTTTTT
1 GTATTTTTATAATTTTATT
*
9127278 CTATTTTT
1 GTATTTTT
9127286 TCCTAATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.21, C:0.02, G:0.06, T:0.70
Consensus pattern (19 bp):
GTATTTTTATAATTTTATT
Found at i:9127286 original size:20 final size:20
Alignment explanation
Indices: 9127240--9127285 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
9127230 TAAATTTTAG
*
9127240 TATTTTTATAATGTTTATTG
1 TATTTTTATAATGTTTATTC
*
9127260 TATTTTTATAAT-TTTTTTC
1 TATTTTTATAATGTTTATTC
9127279 TATTTTT
1 TATTTTT
9127286 TCCTAATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 12 0.50
20 12 0.50
ACGTcount: A:0.22, C:0.02, G:0.04, T:0.72
Consensus pattern (20 bp):
TATTTTTATAATGTTTATTC
Found at i:9127303 original size:18 final size:19
Alignment explanation
Indices: 9127282--9127323 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
9127272 TTTTTTCTAT
9127282 TTTTTCCTAA-TTTTAAA-A
1 TTTTTCC-AATTTTTAAATA
*
9127300 TTTTTGCAATTTTTAAATA
1 TTTTTCCAATTTTTAAATA
9127319 TTTTT
1 TTTTT
9127324 TTGTAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 2 0.10
18 13 0.62
19 6 0.29
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.62
Consensus pattern (19 bp):
TTTTTCCAATTTTTAAATA
Found at i:9128460 original size:114 final size:114
Alignment explanation
Indices: 9128256--9128578 Score: 533
Period size: 114 Copynumber: 2.9 Consensus size: 114
9128246 TAAGATGTTT
*
9128256 GGGCATAACATGAATCATTTGAAGATGGATAAGTCATCT--AGAGAGGATCTATCACTCAAAGTG
1 GGGCATAACATGAATCATTTGAAGATGGATAAGTAATCTAGAGAGAGGATCTATCACTCAAAGTG
*
9128319 ATACTATAAACATATCTCATTCACCATGGTTAATTTGATCAATACTTTG
66 ATACTATAAACATATCTCATTCGCCATGGTTAATTTGATCAATACTTTG
*
9128368 GGGCATAACATGAATCATTTAAAGATGGATAAGTAATCTAGAGAGAGGATCTATCACTCAAAGTG
1 GGGCATAACATGAATCATTTGAAGATGGATAAGTAATCTAGAGAGAGGATCTATCACTCAAAGTG
*
9128433 ATACTATAAACATATCTCATTTGCCATGGTTAATTTGATCAATACTTTG
66 ATACTATAAACATATCTCATTCGCCATGGTTAATTTGATCAATACTTTG
*** * * *
9128482 ATTCATAACATGAACCATTTGAAGATGGATAGGTAATCTAGAGAGAGGATCTATCACTCAAACTG
1 GGGCATAACATGAATCATTTGAAGATGGATAAGTAATCTAGAGAGAGGATCTATCACTCAAAGTG
*
9128547 ATACTATAAACATATCTCATTCGCTATGGTTA
66 ATACTATAAACATATCTCATTCGCCATGGTTA
9128579 CTTTAACCAG
Statistics
Matches: 196, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
112 37 0.19
114 159 0.81
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (114 bp):
GGGCATAACATGAATCATTTGAAGATGGATAAGTAATCTAGAGAGAGGATCTATCACTCAAAGTG
ATACTATAAACATATCTCATTCGCCATGGTTAATTTGATCAATACTTTG
Found at i:9129866 original size:20 final size:20
Alignment explanation
Indices: 9129841--9129880 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
9129831 ATATACATTT
9129841 TACAAAATGGTTGAATATGG
1 TACAAAATGGTTGAATATGG
* *
9129861 TACAAAGTGGTTTAATATGG
1 TACAAAATGGTTGAATATGG
9129881 GCCTGTAGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.05, G:0.25, T:0.33
Consensus pattern (20 bp):
TACAAAATGGTTGAATATGG
Found at i:9139814 original size:40 final size:40
Alignment explanation
Indices: 9139759--9139838 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
9139749 TTTTGGCTCG
9139759 GAATATCAGATAAATCTGTTCTATTCCAAAAATAAATTCT
1 GAATATCAGATAAATCTGTTCTATTCCAAAAATAAATTCT
9139799 GAATATCAGATAAATCTGTTCTATTCCAAAAATAAATTCT
1 GAATATCAGATAAATCTGTTCTATTCCAAAAATAAATTCT
9139839 TTCTAGTTAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.35
Consensus pattern (40 bp):
GAATATCAGATAAATCTGTTCTATTCCAAAAATAAATTCT
Found at i:9139820 original size:22 final size:22
Alignment explanation
Indices: 9139759--9139820 Score: 53
Period size: 18 Copynumber: 3.0 Consensus size: 22
9139749 TTTTGGCTCG
9139759 GAATATCAGATAAATCTGTTCT
1 GAATATCAGATAAATCTGTTCT
***
9139781 --AT-TCCA-A-AAATAAATTCT
1 GAATAT-CAGATAAATCTGTTCT
9139799 GAATATCAGATAAATCTGTTCT
1 GAATATCAGATAAATCTGTTCT
9139821 ATTCCAAAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 12
0.61 0.13 0.26
Matches are distributed among these distances:
18 8 0.29
19 2 0.07
20 8 0.29
21 2 0.07
22 8 0.29
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (22 bp):
GAATATCAGATAAATCTGTTCT
Found at i:9141520 original size:110 final size:110
Alignment explanation
Indices: 9141315--9141610 Score: 405
Period size: 110 Copynumber: 2.7 Consensus size: 110
9141305 GTTAAACGAG
* * * * ** * * ** *
9141315 AAATCGAAACCCAGCACCTTAGGGTACGTTTCCTTAAATTTCCAAACGCAAAATATTATCTTACT
1 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAAAGCAAAACATTGCCTTATT
* * *
9141380 TCGAAATTTTTAAAAAGGGTAATTAGCCATTTGGTTGAATGAGAA
66 TCAAAATTTTTAAAAAGGATAATTAACCATTTGGTTGAATGAGAA
*
9141425 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAATGCAAAACATTGCCTTATT
1 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAAAGCAAAACATTGCCTTATT
* * *
9141490 TTAAAATTTTTTAAAATGAT-ATTAAACCATTTGGTTGAATGAGAA
66 TCAAAATTTTTAAAAAGGATAATT-AACCATTTGGTTGAATGAGAA
9141535 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAAAGCAAAACATTGCCTTATT
1 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAAAGCAAAACATTGCCTTATT
*
9141600 TGAAAATTTTT
66 TCAAAATTTTT
9141611 GTTTTTTGAA
Statistics
Matches: 166, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
109 3 0.02
110 163 0.98
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.32
Consensus pattern (110 bp):
AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAAAGCAAAACATTGCCTTATT
TCAAAATTTTTAAAAAGGATAATTAACCATTTGGTTGAATGAGAA
Found at i:9141818 original size:22 final size:23
Alignment explanation
Indices: 9141766--9141818 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 23
9141756 AAATGGACAT
*
9141766 ATAAAT-AAACACATAAATGAAC
1 ATAAATGAAACACATAAATGAAA
9141788 ATAAA-GAAACA-ATAAA-GAAAA
1 ATAAATGAAACACATAAATG-AAA
9141809 ATAAATGAAA
1 ATAAATGAAA
9141819 ATTATAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 1 0.04
21 12 0.44
22 14 0.52
ACGTcount: A:0.70, C:0.08, G:0.08, T:0.15
Consensus pattern (23 bp):
ATAAATGAAACACATAAATGAAA
Found at i:9142115 original size:3 final size:3
Alignment explanation
Indices: 9142107--9142187 Score: 67
Period size: 3 Copynumber: 26.7 Consensus size: 3
9142097 TAGATGAGGA
* *
9142107 AAT AAT AAT AAT AAT AACT AAT AAT AAC AAT AAT AAT AAT AAA AGAT
1 AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT A-AT
* * * *
9142154 GAT AAT -AT ATT AAA AAT AAT GAAG AA- AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AA
9142188 AAATGCTAAA
Statistics
Matches: 62, Mismatches: 11, Indels: 10
0.75 0.13 0.12
Matches are distributed among these distances:
2 4 0.06
3 52 0.84
4 6 0.10
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:9142906 original size:14 final size:13
Alignment explanation
Indices: 9142887--9142918 Score: 55
Period size: 13 Copynumber: 2.4 Consensus size: 13
9142877 TGTAAAGAAG
9142887 AAAAATAAAAAAAT
1 AAAAAT-AAAAAAT
9142901 AAAAATAAAAAAT
1 AAAAATAAAAAAT
9142914 AAAAA
1 AAAAA
9142919 CAACAGATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:9143788 original size:44 final size:43
Alignment explanation
Indices: 9143740--9144080 Score: 180
Period size: 44 Copynumber: 7.8 Consensus size: 43
9143730 AAAATTCACC
*
9143740 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGTA
1 ATCTTCAATCTGCTCCACTACTGCTTAGGGAGACAGAATCT-TA
* * *
9143784 ATCTTCAA-CTTACTCCACTACTGCTTAGGGAGATAGGA-C-TA
1 ATCTTCAATC-TGCTCCACTACTGCTTAGGGAGACAGAATCTTA
* * * * * * *
9143825 ATAGCTTAAATCTGCTTCTCTACTG-TATTGGGA-AGATAATATTCA
1 AT--CTTCAATCTGCTCCACTACTGCT-TAGGGAGACAGAATCTT-A
*
9143870 CCATCTTCGATCTGCTCCACTACTGCTTAGGGAGA-ATGAAT-TTGCA
1 --ATCTTCAATCTGCTCCACTACTGCTTAGGGAGACA-GAATCTT--A
* * * *
9143916 ATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGA-C-TA
1 ATCTTCAATCTGCTCCACTACTGCTTAGGGAGACAGAATCTTA
* * * * * * * ***
9143957 ATGGCTTAAATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTCACC
1 AT--CTTCAATCTGCTCCACTACTGCT-TAGGG-AGA-CAGAATCTTA
* *
9144004 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCA
1 ATCTTCAATCTGCTCCACTACTGCTTAGGGAGACAGAATCT-TA
* * *
9144048 ATCTTCAACCTACTCCACTACTGCTTAAGGAGA
1 ATCTTCAATCTGCTCCACTACTGCTTAGGGAGA
9144081 TAGGACTAAT
Statistics
Matches: 223, Mismatches: 49, Indels: 50
0.69 0.15 0.16
Matches are distributed among these distances:
41 7 0.03
42 5 0.02
43 47 0.21
44 102 0.46
45 49 0.22
46 9 0.04
47 4 0.02
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (43 bp):
ATCTTCAATCTGCTCCACTACTGCTTAGGGAGACAGAATCTTA
Found at i:9143856 original size:132 final size:132
Alignment explanation
Indices: 9143719--9144146 Score: 750
Period size: 132 Copynumber: 3.2 Consensus size: 132
9143709 TCCCTACTAC
* *
9143719 ATTGGGAAGATAAAATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGTA
1 ATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCA
* * *
9143784 ATCTTCAACTTACTCCACTACTGCTTAGGGAGATAGGACTAATAGCTTAAATCTGCTTCTCTACT
66 ATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
9143849 GT
131 GT
* *
9143851 ATTGGGAAGATAATATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGA-ATGAATTTGC
1 ATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACA-GAATCTGC
9143915 AATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
65 AATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
9143980 TGT
130 TGT
9143983 ATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCA
1 ATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCA
*
9144048 ATCTTCAACCTACTCCACTACTGCTTAAGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
66 ATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
9144113 GT
131 GT
**
9144115 ATTGGGAAGATAAGATTTGCCATCTTCGATCT
1 ATTGGGAAGATAAGATTCACCATCTTCGATCT
9144147 ACCCCACAGC
Statistics
Matches: 283, Mismatches: 11, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
131 1 0.00
132 281 0.99
133 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (132 bp):
ATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCA
ATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
GT
Found at i:9144456 original size:218 final size:218
Alignment explanation
Indices: 9144122--9144523 Score: 623
Period size: 218 Copynumber: 1.8 Consensus size: 218
9144112 TGTATTGGGA
*
9144122 AGATAAGATTTGCCATCTTCGATCTACCCCACAGCAACTTCAGGGGGATAAGACCTGCTTACTCA
1 AGATAAGATTTGCCATCTTCAATCTACCCCACAGCAACTTCAGGGGGATAAGACCTGCTTACTCA
**
9144187 GTCTACTCTGCTGCAACTTCAGGGAGATAAGACCTAATGCGATCCACTCTACTGCAACTTCAGAG
66 GTCTACTCCACTGCAACTTCAGGGAGATAAGACCTAATGCGATCCACTCTACTGCAACTTCAGAG
*
9144252 AGATACGATCTACT-ATTTTAATCCGCTCC-TCTGTAACTTTAGGGAGATAGGATTATCGGCTTC
131 AGATAAGATCT-CTGATTTTAATCCGCTCCAT-TGTAACTTTAGGGAGATAGGATTATCGGCTTC
9144315 AATCTGGTCCACTACAACCTCAGGG
194 AATCTGGTCCACTACAACCTCAGGG
* * *
9144340 AGATAAGGTTTGCCATCTTCAATCTGCCCCGCTA-CAACTTCAGGGGGATAAGACCTGCTTACTC
1 AGATAAGATTTGCCATCTTCAATCTACCCCAC-AGCAACTTCAGGGGGATAAGACCTGCTTACTC
* * * *
9144404 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTGGATGTGATCTACTCTACTGCAACTTCAG
65 AGTCTACTCCACTGCAACTTCAGGGAGATAAGACCT-AATGCGATCCACTCTACTGCAACTTCAG
* *
9144468 AGAGATAAGATCTGTGGTTTTAATCCGCTCCATTGTAACTTTAGGGAGATAGGATT
129 AGAGATAAGATCTCTGATTTTAATCCGCTCCATTGTAACTTTAGGGAGATAGGATT
9144524 TATTTCTTTC
Statistics
Matches: 167, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
217 3 0.02
218 162 0.97
219 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (218 bp):
AGATAAGATTTGCCATCTTCAATCTACCCCACAGCAACTTCAGGGGGATAAGACCTGCTTACTCA
GTCTACTCCACTGCAACTTCAGGGAGATAAGACCTAATGCGATCCACTCTACTGCAACTTCAGAG
AGATAAGATCTCTGATTTTAATCCGCTCCATTGTAACTTTAGGGAGATAGGATTATCGGCTTCAA
TCTGGTCCACTACAACCTCAGGG
Found at i:9144517 original size:44 final size:44
Alignment explanation
Indices: 9144409--9145034 Score: 257
Period size: 44 Copynumber: 14.6 Consensus size: 44
9144399 TACTCAGTCT
* * * * *
9144409 GCTCCACTGCAACTTCAGGGAGATAAGA-C--TGGATGTGATCT
1 GCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
* *
9144450 ACTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
1 GCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
* * * * * * * * ** *
9144494 GCTCCATTGTAACTTTAGGGAGATAGGATTTAT-TTCTTTCGTCT
1 GCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGT-TTTAATCC
* * * * *
9144538 GCTCCACTGCAACTTCAGGGAGATAAGA-C--TGGATGTGATCT
1 GCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
* *
9144579 GCTCTACTGCAACTTCAGAGAAATAAGATCTGTGGTTTTAATCC
1 GCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
* * ***
9144623 GCTCCACTGCAACTTCAGTA-AGATAGGAT-TAAT--TTCTTTCGCC
1 GCTCCACTGCAACTTCAG-AGAGATAAGATCT-GTGGTT-TTAATCC
* * * *
9144666 TGCTCCACTGTAACCTCAGAGAGATAAGACCTGATGCG-----ATCT
1 -GCTCCACTGCAACTTCAGAGAGATAAGATCTG-TG-GTTTTAATCC
* * *
9144708 ACTCTACTGTAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
1 GCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
* * * * * * * * ** *
9144752 GCTTCATTGTAACTTCAGGGAGATAGGATTTAT-TTCTTTCGTCT
1 GCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGT-TTTAATCC
* * * * * *
9144796 ACTCCACTGCAACTTCAGGGAGATAAGA-C--TGGATGTGATCT
1 GCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
* *
9144837 GCTCTACTGCAACTTCAGAGAAATAAGATCTGTGGTTTTAATCC
1 GCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
* * * * ** *
9144881 ACTCCACTGCAACTTCAG-GAAGATAGGAT-TAAT-TTCTTTCGTCT
1 GCTCCACTGCAACTTCAGAG-AGATAAGATCT-GTGGT-TTTAATCC
* * * * *
9144925 GCTCCACTGTAACCTCAGGGAGATAAGACCTGATGCG-----ATCT
1 GCTCCACTGCAACTTCAGAGAGATAAGATCTG-TG-GTTTTAATCC
* * * **
9144966 GCTCTACTGTAACTTCAGAGAGATGAGATCCT-TTATTTTAATCC
1 GCTCCACTGCAACTTCAGAGAGATAAGAT-CTGTGGTTTTAATCC
*
9145010 GCTCCACTGTAACTTCAGAGAGATA
1 GCTCCACTGCAACTTCAGAGAGATA
9145035 GGATTACTAG
Statistics
Matches: 428, Mismatches: 115, Indels: 81
0.69 0.18 0.13
Matches are distributed among these distances:
39 1 0.00
40 3 0.01
41 141 0.33
42 8 0.02
43 11 0.03
44 258 0.60
45 6 0.01
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.31
Consensus pattern (44 bp):
GCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
Found at i:9144554 original size:129 final size:129
Alignment explanation
Indices: 9144405--9145040 Score: 945
Period size: 129 Copynumber: 4.9 Consensus size: 129
9144395 TGCTTACTCA
*
9144405 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTACTCTACTGCAACTTCAGAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* * *
9144470 AGATAAGATCTGTGGTTTTAATCCGCTCCATTGTAACTTTAGGGAGATAGGATTTATTTCTTTC
66 AGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTAATTTCTTTC
9144534 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* * **
9144599 AAATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGTAAGATAGGATTAATTTCTTTC
66 AGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTAATTTCTTTC
* * * * * * *
9144663 GCCTGCTCCACTGTAACCTCAGAGAGATAAGACCT-GATGCGATCTACTCTACTGTAACTTCAGA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTGGATGTGATCTGCTCTACTGCAACTTCAGA
* * *
9144727 GAGATAAGATCTGTGGTTTTAATCCGCTTCATTGTAACTTCAGGGAGATAGGATTTATTTCTTTC
65 GAGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTAATTTCTTTC
*
9144792 GTCTACTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* * * *
9144857 AAATAAGATCTGTGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTAATTTCTTTC
66 AGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTAATTTCTTTC
* * * *
9144921 GTCTGCTCCACTGTAACCTCAGGGAGATAAGACCT-GATGCGATCTGCTCTACTGTAACTTCAGA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTGGATGTGATCTGCTCTACTGCAACTTCAGA
* ** *
9144985 GAGATGAGATCCT-TTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTA
65 GAGATAAGAT-CTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTA
9145041 CTAGCTTCAA
Statistics
Matches: 453, Mismatches: 50, Indels: 8
0.89 0.10 0.02
Matches are distributed among these distances:
128 2 0.00
129 445 0.98
130 6 0.01
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.31
Consensus pattern (129 bp):
GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
AGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTAATTTCTTTC
Found at i:9145064 original size:44 final size:44
Alignment explanation
Indices: 9144668--9145706 Score: 317
Period size: 44 Copynumber: 23.8 Consensus size: 44
9144658 CTTTCGCCTG
* * * * *
9144668 CTCCACTGTAACCTCAGAGAGATAAGA-C-CT-GATGCGATCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCTCTAGCTTCAATCTA
* * * * * * **
9144709 CTCTACTGTAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCG
1 CTCCACTGTAACTTCAGGGAGATAAGATCTCTAGCTTCAATCTA
* * * * * ** *
9144753 CTTCATTGTAACTTCAGGGAGATAGGATTTATTTCTTTC-GTCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCTCTAGC-TTCAATCTA
* * * * *
9144797 CTCCACTGCAACTTCAGGGAGATAAGA---CTGGATGT-GATCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCTCTAGCT-TCAATCTA
* * * * * * * * *
9144838 CTCTACTGCAACTTCAGAGAAATAAGATCTGTGGTTTTAATCCA
1 CTCCACTGTAACTTCAGGGAGATAAGATCTCTAGCTTCAATCTA
* * * * ** * *
9144882 CTCCACTGCAACTTCAGGAAGATAGGAT-TAATTTCTTTC-GTCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCT-CTAGC-TTCAATCTA
* * * * *
9144926 CTCCACTGTAACCTCAGGGAGATAAGA-C-CT-GATGCGATCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCTCTAGCTTCAATCTA
* * * * * * **
9144967 CTCTACTGTAACTTCAGAGAGATGAGATCCTTTA-TTTTAATCCG
1 CTCCACTGTAACTTCAGGGAGATAAGAT-CTCTAGCTTCAATCTA
* *
9145011 CTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCAATCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCT-CTAGCTTCAATCTA
* * *
9145055 CTCCGCTGTAA-TCTCAGGGAGATAAGATCTCTGGCTTCAATCTG
1 CTCCACTGTAACT-TCAGGGAGATAAGATCTCTAGCTTCAATCTA
* ** ** *
9145099 CTCCACTGTAACCTCAGGGAGATAAGAT-AGT-GTCTTGGATCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCTCTAG-CTTCAATCTA
* ** * **
9145142 CTCCGCTGTAA-TCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTA
1 CTCCACTGTAACT-TCAGGGAGATAAGATCT-CTA-GCTTCAATCTA
* * ** * * *
9145188 CTCTACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTTAGTCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCT-CTA-GCTTCAATCTA
* * * * *
9145234 CTCCACTGTAACCTCAGGGAGATAAGA-C-CT-GATGCGATATA
1 CTCCACTGTAACTTCAGGGAGATAAGATCTCTAGCTTCAATCTA
** * * * * *
9145275 CTCTGCTGTAACTTCAGAGAGATAAGATC-CTTGATTTTAATCCA
1 CTCCACTGTAACTTCAGGGAGATAAGATCTCTAG-CTTCAATCTA
* * *
9145319 CTCCACTGTAATCTT-AGGGAGATAGGAT-TACTATCTTCAATCTG
1 CTCCACTGTAA-CTTCAGGGAGATAAGATCT-CTAGCTTCAATCTA
** * * * *
9145363 CTCTGCTGTAA-TATCATGGAGATAAGATATCTGGCTTCAATCTG
1 CTCCACTGTAACT-TCAGGGAGATAAGATCTCTAGCTTCAATCTA
* ** ** **
9145407 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCT-CTA-GCTTCAATCTA
* * * ** * **
9145453 CTCCACTGTAACTTCAGAGAGATAAGGTTTGAAATTCTTCGGTCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCT-CTA-GCTTCAATCTA
* * ** * **
9145499 CTCCACTGTAACCTCAGGGAGATAAGATTTAAAATTCTTCGGTCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCT-CTA-GCTTCAATCTA
* * * *
9145545 CTCCACTGTAACCTCAGGGAGATAAGA-C-CT-GATGCGATCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCTCTAGCTTCAATCTA
* * * * * * **
9145586 CTCTACTGTAACTTCAGAGAGATAATATC-CTTGATTGTAATCCG
1 CTCCACTGTAACTTCAGGGAGATAAGATCTCTAGCTT-CAATCTA
* * * ** *
9145630 CTCCACTGTAA-TCTCAAGGAGATAGGAT-TATTATATTCAATCTG
1 CTCCACTGTAACT-TCAGGGAGATAAGATCT-CTAGCTTCAATCTA
* *
9145674 CTCCGCTGTAA-TCTCAAGGAGATAAGATCTCTA
1 CTCCACTGTAACT-TCAGGGAGATAAGATCTCTA
9145707 ATATTCACTG
Statistics
Matches: 756, Mismatches: 193, Indels: 95
0.72 0.18 0.09
Matches are distributed among these distances:
40 3 0.00
41 138 0.18
42 11 0.01
43 47 0.06
44 351 0.46
45 17 0.02
46 189 0.25
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (44 bp):
CTCCACTGTAACTTCAGGGAGATAAGATCTCTAGCTTCAATCTA
Found at i:9145064 original size:129 final size:128
Alignment explanation
Indices: 9144405--9145214 Score: 893
Period size: 129 Copynumber: 6.2 Consensus size: 128
9144395 TGCTTACTCA
* * * *
9144405 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTACTCTACTGCAACTTCAGAG
1 GTCTGCTCCACTGTAACCTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAG
* * *
9144470 AGATAAGATCTGTGGTTTTAATCCGCTCCATTGTAACTTTAGGGAGATAGGATTTATTTCTTTC
66 AGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGA-TTATTTCTTTC
* * *
9144534 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
1 GTCTGCTCCACTGTAACCTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAG
* *
9144599 AAATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGTA-AGATAGGATTAATTTCTTTC
66 AGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAG-AGAGATAGGATT-ATTTCTTTC
* * * *
9144663 GCCTGCTCCACTGTAACCTCAGAGAGATAAGACCT-GATGCGATCTACTCTACTGTAACTTCAGA
1 GTCTGCTCCACTGTAACCTCAGGGAGATAAGA-CTGGATGCGATCTGCTCTACTGCAACTTCAGA
* * *
9144727 GAGATAAGATCTGTGGTTTTAATCCGCTTCATTGTAACTTCAGGGAGATAGGATTTATTTCTTTC
65 GAGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGA-TTATTTCTTTC
* * * *
9144792 GTCTACTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
1 GTCTGCTCCACTGTAACCTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAG
* * *
9144857 AAATAAGATCTGTGGTTTTAATCCACTCCACTGCAACTTCAG-GAAGATAGGATTAATTTCTTTC
66 AGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAGAG-AGATAGGATT-ATTTCTTTC
*
9144921 GTCTGCTCCACTGTAACCTCAGGGAGATAAGACCT-GATGCGATCTGCTCTACTGTAACTTCAGA
1 GTCTGCTCCACTGTAACCTCAGGGAGATAAGA-CTGGATGCGATCTGCTCTACTGCAACTTCAGA
* ** **
9144985 GAGATGAGATCCT-TTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTACTAGC-TT
65 GAGATAAGAT-CTGTGGTTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTA-TTTCTTT
9145048 C
128 C
* * * * * * * * * *
9145049 AATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTC
1 -GTCTGCTCCACTGTAACCTCAGGGAGATAAGA---CTGGATGCGATCTGCTCTACTGCAACTTC
* * ** * * * * *
9145114 AGGGAGATAAGAT-AGT-GTCTTGGATCTGCTCCGCTGTAA-TCTCAGGGAGATAAGATCTGAAA
62 AGAGAGATAAGATCTGTGGT-TTTAATCCGCTCCACTGTAACT-TCAGAGAGATAGGAT-T--AT
9145176 TTC-TTC
122 TTCTTTC
* *
9145182 GGTCTACTCTACTGTAACCTCAGGGAGATAAGA
1 -GTCTGCTCCACTGTAACCTCAGGGAGATAAGA
9145215 TCTGAAATTC
Statistics
Matches: 587, Mismatches: 72, Indels: 40
0.84 0.10 0.06
Matches are distributed among these distances:
128 11 0.02
129 467 0.80
130 11 0.02
131 32 0.05
132 33 0.06
133 32 0.05
134 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.31
Consensus pattern (128 bp):
GTCTGCTCCACTGTAACCTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAG
AGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTATTTCTTTC
Found at i:9145081 original size:258 final size:258
Alignment explanation
Indices: 9144405--9145039 Score: 1085
Period size: 258 Copynumber: 2.5 Consensus size: 258
9144395 TGCTTACTCA
* * * *
9144405 GTCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTGGATGTGATCTACTCTACTGCAACTTCAGA
1 GTCTGCTCCACTGTAACCTCAGGGAGATAAGACCT-GATGCGATCTACTCTACTGTAACTTCAGA
*
9144469 GAGATAAGATCTGTGGTTTTAATCCGCTCCATTGTAACTTTAGGGAGATAGGATTTATTTCTTTC
65 GAGATAAGATCTGTGGTTTTAATCCGCTCCATTGTAACTTCAGGGAGATAGGATTTATTTCTTTC
*
9144534 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
130 GTCTACTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* *
9144599 AAATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGTAAGATAGGATTAATTTCTTTC
195 AAATAAGATCTGTGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTAATTTCTTTC
* *
9144663 GCCTGCTCCACTGTAACCTCAGAGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAG
1 GTCTGCTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAG
*
9144728 AGATAAGATCTGTGGTTTTAATCCGCTTCATTGTAACTTCAGGGAGATAGGATTTATTTCTTTCG
66 AGATAAGATCTGTGGTTTTAATCCGCTCCATTGTAACTTCAGGGAGATAGGATTTATTTCTTTCG
9144793 TCTACTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
131 TCTACTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
9144858 AATAAGATCTGTGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTAATTTCTTTC
196 AATAAGATCTGTGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTAATTTCTTTC
*
9144921 GTCTGCTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTGCTCTACTGTAACTTCAGAG
1 GTCTGCTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAG
* ** * *
9144986 AGATGAGATCCT-TTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATT
66 AGATAAGAT-CTGTGGTTTTAATCCGCTCCATTGTAACTTCAGGGAGATAGGATT
9145040 ACTAGCTTCA
Statistics
Matches: 355, Mismatches: 20, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
258 351 0.99
259 4 0.01
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.31
Consensus pattern (258 bp):
GTCTGCTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAG
AGATAAGATCTGTGGTTTTAATCCGCTCCATTGTAACTTCAGGGAGATAGGATTTATTTCTTTCG
TCTACTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
AATAAGATCTGTGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTAATTTCTTTC
Found at i:9145209 original size:46 final size:46
Alignment explanation
Indices: 9145051--9145576 Score: 371
Period size: 46 Copynumber: 11.8 Consensus size: 46
9145041 CTAGCTTCAA
* * * * **
9145051 TCTACTCCGCTGTAATCTCAGGGAGATAAGATCT---CTGGCTTCAA
1 TCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT-TCTTCGG
* *
9145095 TCTGCTCCACTGTAACCTCAGGGAGATAAGA--T--AGTGTCTT-GG
1 TCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT-TCTTCGG
* * *
9145137 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGG
1 -TCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGG
* **
9145184 TCTACTCTACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTTAG
1 TCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGG
* * *
9145230 TCTACTCCACTGTAACCTCAGGGAGATAAGACCTG--A---TGCGA
1 TCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGG
* ** * * **
9145271 TATACTCTGCTGTAACTTCAGAGAGATAAGATCCTTG--ATT-TT-AA
1 TCTACTCCACTGTAACCTCAGGGAGATAAGAT-C-TGAAATTCTTCGG
* * * * * **
9145315 TCCACTCCACTGTAATCTTAGGGAGATAGGAT-T--ACTATCTTCAA
1 TCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT-TCTTCGG
* ** ** * * **
9145359 TCTGCTCTGCTGTAATATCATGGAGATAAGATATCTG----GCTTCAA
1 TCTACTCCACTGTAACCTCAGGGAGATAAG--ATCTGAAATTCTTCGG
* *
9145403 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTTTTCGG
1 TCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGG
* * * *
9145449 TCTACTCCACTGTAACTTCAGAGAGATAAGGTTTGAAATTCTTCGG
1 TCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGG
* *
9145495 TCTACTCCACTGTAACCTCAGGGAGATAAGATTTAAAATTCTTCGG
1 TCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGG
*
9145541 TCTACTCCACTGTAACCTCAGGGAGATAAGACCTGA
1 TCTACTCCACTGTAACCTCAGGGAGATAAGATCTGA
9145577 TGCGATCTAC
Statistics
Matches: 388, Mismatches: 71, Indels: 44
0.77 0.14 0.09
Matches are distributed among these distances:
41 29 0.07
42 8 0.02
43 39 0.10
44 108 0.28
45 2 0.01
46 197 0.51
47 5 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (46 bp):
TCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGG
Found at i:9145488 original size:265 final size:264
Alignment explanation
Indices: 9145016--9145525 Score: 709
Period size: 265 Copynumber: 1.9 Consensus size: 264
9145006 ATCCGCTCCA
* * *
9145016 CTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAG
1 CTGTAACTTCAGAGAGATAAGATTACTAGCTTCAATCCACTCCACTGTAATCTCAGGGAGATAAG
* * * * **
9145081 ATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATAGTGTCTTGGATCTGCTCC
66 ATCTCTAGCTTCAATCTGCTCCACTGTAACATCAGGGAGATAAGATACTGGCTTCAATCTGCTCC
* * * *
9145146 GCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCTACTGTAACCTCAGGGAGAT
131 ACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGAGAGAT
*
9145211 AAGATCTGAAATTCTTTAGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATATAC
196 AAGATCTGAAATTCTTCAGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATATAC
9145276 TCTG
261 TCTG
* * * * * *
9145280 CTGTAACTTCAGAGAGATAAGA-TCCTTGATTTTAATCCACTCCACTGTAATCTTAGGGAGATAG
1 CTGTAACTTCAGAGAGATAAGATTACTAG-CTTCAATCCACTCCACTGTAATCTCAGGGAGATAA
* ** * *
9145344 GAT-TACTATCTTCAATCTGCTCTGCTGTAATATCATGGAGATAAGATATCTGGCTTCAATCTGC
65 GATCT-CTAGCTTCAATCTGCTCCACTGTAACATCAGGGAGATAAGATA-CTGGCTTCAATCTGC
* *
9145408 TCCACTGTAACCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTACTCCACTGTAACTTCAGAGA
128 TCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGAGA
* * *
9145473 GATAAGGTTTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGA
193 GATAAGATCTGAAATTCTTCAGTCTACTCCACTGTAACCTCAGGGAGATAAGA
9145526 TTTAAAATTC
Statistics
Matches: 213, Mismatches: 30, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
263 5 0.02
264 89 0.42
265 119 0.56
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.30
Consensus pattern (264 bp):
CTGTAACTTCAGAGAGATAAGATTACTAGCTTCAATCCACTCCACTGTAATCTCAGGGAGATAAG
ATCTCTAGCTTCAATCTGCTCCACTGTAACATCAGGGAGATAAGATACTGGCTTCAATCTGCTCC
ACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGAGAGAT
AAGATCTGAAATTCTTCAGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATATAC
TCTG
Found at i:9145605 original size:311 final size:306
Alignment explanation
Indices: 9144881--9145701 Score: 1175
Period size: 311 Copynumber: 2.7 Consensus size: 306
9144871 GTTTTAATCC
* * * * * *
9144881 ACTCCACTGCAACTTCAGGAAGATAGGA-TTAATTTCTTTCGTCTGCTCCACTGTAACCTCAGGG
1 ACTCCACTGTAACCTCAGGGAGATAAGATTTAAATTC-TTCGTCTACTCCACTGTAACCTCAGGG
* * *
9144945 AGATAAGACCTGATGCGATCTGCTCTACTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCC
65 AGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTGATTTTAATCC
* * * *
9145010 GCTCCACTGTAA-CTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGGG
130 GCTCCACTGTAATCTT-AGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAAGG
* *
9145074 AGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATAGTGTCTTGGAT
194 AGATAAGATATCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATAATGTCTTGGAT
* * *
9145139 CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCT
259 CTACTCCACTGTAATCTCAGAGAGATAAGATCTGAAATTCTTCGGTCT
* * *
9145187 ACTCTACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTTAGTCTACTCCACTGTAACCTCAGG
1 ACTCCACTGTAACCTCAGGGAGATAAGAT-TTAAATTC-TTCGTCTACTCCACTGTAACCTCAGG
* *
9145252 GAGATAAGACCTGATGCGATATACTCTGCTGTAACTTCAGAGAGATAAGATCCTTGATTTTAATC
64 GAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTGATTTTAATC
* * * *
9145317 CACTCCACTGTAATCTTAGGGAGATAGGATTACTATCTTCAATCTGCTCTGCTGTAATATCATGG
129 CGCTCCACTGTAATCTTAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAAGG
*
9145382 AGATAAGATATCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT-TTTT
194 AGATAAGATATCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGA--T--AATGTCTT
* *
9145446 CGG-TCTACTCCACTGTAA-CTTCAGAGAGATAAGGTTTGAAATTCTTCGGTCT
255 -GGATCTACTCCACTGTAATC-TCAGAGAGATAAGATCTGAAATTCTTCGGTCT
9145498 ACTCCACTGTAACCTCAGGGAGATAAGATTTAAAATTCTTCGGTCTACTCCACTGTAACCTCAGG
1 ACTCCACTGTAACCTCAGGGAGATAAGATTT-AAATTCTTC-GTCTACTCCACTGTAACCTCAGG
* *
9145563 GAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTGATTGTAATC
64 GAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTGATTTTAATC
* * * *
9145628 CGCTCCACTGTAATCTCAAGGAGATAGGATTATTATATTCAATCTGCTCCGCTGTAATCTCAAGG
129 CGCTCCACTGTAATCTTAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAAGG
9145693 AGATAAGAT
194 AGATAAGAT
9145702 CTCTAATATT
Statistics
Matches: 460, Mismatches: 44, Indels: 17
0.88 0.08 0.03
Matches are distributed among these distances:
306 23 0.05
308 196 0.43
309 3 0.01
310 5 0.01
311 229 0.50
312 4 0.01
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (306 bp):
ACTCCACTGTAACCTCAGGGAGATAAGATTTAAATTCTTCGTCTACTCCACTGTAACCTCAGGGA
GATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTGATTTTAATCCG
CTCCACTGTAATCTTAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAAGGAG
ATAAGATATCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATAATGTCTTGGATCT
ACTCCACTGTAATCTCAGAGAGATAAGATCTGAAATTCTTCGGTCT
Found at i:9147560 original size:3 final size:3
Alignment explanation
Indices: 9147513--9147590 Score: 52
Period size: 3 Copynumber: 25.7 Consensus size: 3
9147503 TTTAGCATTT
* * * * *
9147513 TTA TTA TT- TTC TTCA TTA TTT TTA ATA -TA TTA TCA TCTT TTA TTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
* *
9147558 TTA TTG TTG TTA TTA TTA GTTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TT
9147591 TCCTCATCTA
Statistics
Matches: 60, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
2 4 0.07
3 50 0.83
4 6 0.10
ACGTcount: A:0.26, C:0.05, G:0.04, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:9148281 original size:110 final size:109
Alignment explanation
Indices: 9148088--9148384 Score: 387
Period size: 110 Copynumber: 2.7 Consensus size: 109
9148078 TTCAAAAAAC
* * * * *
9148088 AAAAATTTTTCAAATAAGGCAATGTTTTGCTTTTAGAAATTCGAGAAAATATGCCCTAAGGTGCT
1 AAAAAATTTTAAAATAAGGTAATGTTTTGCTTTGA-AAATTCGAGAAAACATGCCCTAAGGTGCT
* *
9148153 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTTAATATCCTTTT
65 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATACCCTTTT
9148198 AAAAAATTTTAAAATAAGGTAATGTTTTGCGTTTGAAAATTCGAGAAAACATGCCCTAAGGTGCT
1 AAAAAATTTTAAAATAAGGTAATGTTTTGC-TTTGAAAATTCGAGAAAACATGCCCTAAGGTGCT
9148263 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATACCCTTTT
65 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATACCCTTTT
* ** * * * * ** * * *
9148308 TAAAAATTTCGAAGTAAGATAATATTTTGCATTTGGAAATTTAAGGAAACGTACCCTAAGGTGCT
1 AAAAAATTTTAAAATAAGGTAATGTTTTGC-TTTGAAAATTCGAGAAAACATGCCCTAAGGTGCT
*
9148373 GGGTTTCGATTT
65 GGGTGTCGATTT
9148385 CTCGTTTAAC
Statistics
Matches: 165, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
110 161 0.98
111 4 0.02
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (109 bp):
AAAAAATTTTAAAATAAGGTAATGTTTTGCTTTGAAAATTCGAGAAAACATGCCCTAAGGTGCTG
GGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATACCCTTTT
Found at i:9149089 original size:22 final size:20
Alignment explanation
Indices: 9149053--9149111 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 20
9149043 GGCCCGGCCC
9149053 ATTT-TTTTAATAAATACCAAAA
1 ATTTATTTTAA-AAATA--AAAA
9149075 ATTTATTTTAAAAATTAAAAA
1 ATTTATTTTAAAAA-TAAAAA
**
9149096 AAGTATTTTAAAAATA
1 ATTTATTTTAAAAATA
9149112 TTTTAAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 2 0.06
21 16 0.48
22 7 0.21
23 8 0.24
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (20 bp):
ATTTATTTTAAAAATAAAAA
Found at i:9149125 original size:17 final size:17
Alignment explanation
Indices: 9149103--9149149 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
9149093 AAAAAGTATT
*
9149103 TTAAAAATATTTTAAAA
1 TTAAAAATATTTAAAAA
*
9149120 TTAAAAAAATTTAAAAA
1 TTAAAAATATTTAAAAA
* *
9149137 ATAAATATATTTA
1 TTAAAAATATTTA
9149150 TTATATCAGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TTAAAAATATTTAAAAA
Found at i:9150122 original size:18 final size:18
Alignment explanation
Indices: 9150074--9150122 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
9150064 TTAGTTTTAA
*
9150074 AATTTTAAAAATATTTTT
1 AATTTTAAAAATAATTTT
*
9150092 ATATTTT-ATAATAATTTT
1 A-ATTTTAAAAATAATTTT
9150110 AATTTTAAAAATA
1 AATTTTAAAAATA
9150123 TATATTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 5 0.19
18 16 0.62
19 5 0.19
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
AATTTTAAAAATAATTTT
Found at i:9151452 original size:30 final size:31
Alignment explanation
Indices: 9151418--9151490 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 31
9151408 TTAAATTAAT
* *
9151418 AATGATAAAAATACATTTTTA-CTTATAAAA
1 AATGATAAAAATACAATTTAATCTTATAAAA
* * * *
9151448 AATGATACAAATTCAATTTAATTTTTTAAAA
1 AATGATAAAAATACAATTTAATCTTATAAAA
9151479 AAT-ATAAAAATA
1 AATGATAAAAATA
9151491 TAAACTATTA
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
30 24 0.71
31 10 0.29
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.37
Consensus pattern (31 bp):
AATGATAAAAATACAATTTAATCTTATAAAA
Found at i:9164293 original size:108 final size:108
Alignment explanation
Indices: 9164104--9164323 Score: 413
Period size: 108 Copynumber: 2.0 Consensus size: 108
9164094 TCGAAAATTG
9164104 AGGGCCTCGAGGGTGAGCTCGTTATGTGTAGAGCTATTGTGGGTAAAGGGATATTGGTTTCGATC
1 AGGGCCTCGAGGGTGAGCTCGTTATGTGTAGAGCTATTGTGGGTAAAGGGATATTGGTTTCGATC
9164169 CCTAAGCAACATAAAATGGATATCCCCAAGTTGAAAGACTTTA
66 CCTAAGCAACATAAAATGGATATCCCCAAGTTGAAAGACTTTA
* *
9164212 AGGGCCTCGAGGGTGAGCTCGTTATGTGTAGAGCTGTTGTGGGTAAAGGGATGTTGGTTTCGATC
1 AGGGCCTCGAGGGTGAGCTCGTTATGTGTAGAGCTATTGTGGGTAAAGGGATATTGGTTTCGATC
*
9164277 CCTAAGCAACGTAAAATGGATATCCCCAAGTTGAAAGACTTTA
66 CCTAAGCAACATAAAATGGATATCCCCAAGTTGAAAGACTTTA
9164320 AGGG
1 AGGG
9164324 GATGATGTCC
Statistics
Matches: 109, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
108 109 1.00
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.27
Consensus pattern (108 bp):
AGGGCCTCGAGGGTGAGCTCGTTATGTGTAGAGCTATTGTGGGTAAAGGGATATTGGTTTCGATC
CCTAAGCAACATAAAATGGATATCCCCAAGTTGAAAGACTTTA
Found at i:9166541 original size:3 final size:3
Alignment explanation
Indices: 9166527--9166558 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
9166517 GCTTAGCCAA
*
9166527 AAG AAG AGG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
9166559 AAGTACAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:9169662 original size:3 final size:3
Alignment explanation
Indices: 9169654--9169678 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
9169644 AGATGAAAAT
9169654 GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA G
9169679 CTAGGGTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:9185992 original size:22 final size:22
Alignment explanation
Indices: 9185950--9185993 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
9185940 AAAAAAGTAT
* *
9185950 AAATTAATTAAAAATTTTAAAA
1 AAATTAATTAAAAAGTATAAAA
*
9185972 AAATTATTTAAAAAGTATAAAA
1 AAATTAATTAAAAAGTATAAAA
9185994 TTATAATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (22 bp):
AAATTAATTAAAAAGTATAAAA
Found at i:9188127 original size:15 final size:14
Alignment explanation
Indices: 9188106--9188141 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
9188096 ATAATCCTTA
*
9188106 ATAATTATCTTAAT
1 ATAATTATCCTAAT
9188120 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
9188135 ATAATTA
1 ATAATTA
9188142 AAATAGAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:9188741 original size:22 final size:22
Alignment explanation
Indices: 9188690--9188747 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
9188680 TTATCATAAT
*
9188690 TTATTTATAAAAAAAACTTTTA
1 TTATTTATAAAAAAAACTTATA
** *
9188712 AAAGTTATAGAAAAAAA-TTATA
1 TTATTTATA-AAAAAAACTTATA
9188734 TTATTTATAAAAAA
1 TTATTTATAAAAAA
9188748 GTGTTATAAA
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
21 5 0.18
22 16 0.57
23 7 0.25
ACGTcount: A:0.57, C:0.02, G:0.03, T:0.38
Consensus pattern (22 bp):
TTATTTATAAAAAAAACTTATA
Found at i:9192773 original size:15 final size:15
Alignment explanation
Indices: 9192753--9192782 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9192743 TTTTTTTTAG
9192753 AAAATTATAAAAATA
1 AAAATTATAAAAATA
*
9192768 AAAATTATAGAAATA
1 AAAATTATAAAAATA
9192783 TTATAAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (15 bp):
AAAATTATAAAAATA
Found at i:9192787 original size:26 final size:25
Alignment explanation
Indices: 9192750--9192799 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
9192740 AGTTTTTTTT
9192750 TAGAAAATTATAAAAATAAAAATTA
1 TAGAAAATTATAAAAATAAAAATTA
*
9192775 TAGAAATATTATAAAAATTAAAATT
1 TAGAAA-ATTATAAAAATAAAAATT
9192800 CACTACTCCT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (25 bp):
TAGAAAATTATAAAAATAAAAATTA
Found at i:9195864 original size:21 final size:21
Alignment explanation
Indices: 9195840--9195887 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
9195830 ATTTTCTTGT
*
9195840 TGCCTCAACTGCCCTTGCTGC
1 TGCCTCAACTGCCCTCGCTGC
* * *
9195861 TGCCTCTACTTCTCTCGCTGC
1 TGCCTCAACTGCCCTCGCTGC
9195882 TGCCTC
1 TGCCTC
9195888 TGCTTTAAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.06, C:0.44, G:0.17, T:0.33
Consensus pattern (21 bp):
TGCCTCAACTGCCCTCGCTGC
Found at i:9209984 original size:22 final size:23
Alignment explanation
Indices: 9209959--9210007 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 23
9209949 TCATTTTGAT
*
9209959 AACTTTTTA-AACCTAAACCTTA
1 AACTTTTTAGAACCTAAACCCTA
*
9209981 AAC--TTTAGATCCTAAACCCTA
1 AACTTTTTAGAACCTAAACCCTA
9210002 AACTTT
1 AACTTT
9210008 AAACCTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
20 4 0.18
21 14 0.64
22 3 0.14
23 1 0.05
ACGTcount: A:0.39, C:0.24, G:0.02, T:0.35
Consensus pattern (23 bp):
AACTTTTTAGAACCTAAACCCTA
Found at i:9210017 original size:21 final size:20
Alignment explanation
Indices: 9209964--9210018 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 20
9209954 TTGATAACTT
*
9209964 TTTAAACCTAAACCTTAAAC
1 TTTAAACCTAAACCCTAAAC
*
9209984 TTTAGATCCTAAACCCTAAAC
1 TTTA-AACCTAAACCCTAAAC
9210005 TTTAAACCTTAAAC
1 TTTAAACC-TAAAC
9210019 TTTGGACCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.23
21 23 0.77
ACGTcount: A:0.42, C:0.25, G:0.02, T:0.31
Consensus pattern (20 bp):
TTTAAACCTAAACCCTAAAC
Found at i:9210052 original size:14 final size:14
Alignment explanation
Indices: 9210033--9210077 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
9210023 GACCTTCAAA
9210033 GTTTAAGGTCTAAG
1 GTTTAAGGTCTAAG
*
9210047 GTTTAAAGTCTAAG
1 GTTTAAGGTCTAAG
* * *
9210061 GTTCAGGGTTTAAG
1 GTTTAAGGTCTAAG
9210075 GTT
1 GTT
9210078 GAGAGTTCAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.38
Consensus pattern (14 bp):
GTTTAAGGTCTAAG
Found at i:9211604 original size:14 final size:14
Alignment explanation
Indices: 9211585--9211611 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9211575 CATAAGTTGT
9211585 ATTTATAATTTGAC
1 ATTTATAATTTGAC
9211599 ATTTATAATTTGA
1 ATTTATAATTTGA
9211612 TGAGTGGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.04, G:0.07, T:0.52
Consensus pattern (14 bp):
ATTTATAATTTGAC
Found at i:9212167 original size:21 final size:23
Alignment explanation
Indices: 9212143--9212184 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
9212133 TATTCTTTTT
*
9212143 TTAAAT-TAAGTAAA-AAAATTC
1 TTAAATCTAAATAAACAAAATTC
9212164 TTAAATCTAAATAAACAAAAT
1 TTAAATCTAAATAAACAAAAT
9212185 AAATTAATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 7 0.39
23 5 0.28
ACGTcount: A:0.60, C:0.07, G:0.02, T:0.31
Consensus pattern (23 bp):
TTAAATCTAAATAAACAAAATTC
Found at i:9215030 original size:12 final size:12
Alignment explanation
Indices: 9215013--9215042 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
9215003 TCATTTAATC
9215013 ATCAAGTTTTTA
1 ATCAAGTTTTTA
*
9215025 ATCAAGTTTTTC
1 ATCAAGTTTTTA
9215037 ATCAAG
1 ATCAAG
9215043 CTCTCATCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.43
Consensus pattern (12 bp):
ATCAAGTTTTTA
Found at i:9221879 original size:5 final size:5
Alignment explanation
Indices: 9221869--9221919 Score: 59
Period size: 5 Copynumber: 10.0 Consensus size: 5
9221859 AAAATTACAC
* *
9221869 ATTTT ATTTT ATTTTT ATTTTT ATTCT -TTCT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT A-TTTT A-TTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT
9221920 GCAGGTAGAC
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
4 4 0.10
5 27 0.64
6 11 0.26
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (5 bp):
ATTTT
Found at i:9221886 original size:6 final size:6
Alignment explanation
Indices: 9221870--9221919 Score: 52
Period size: 6 Copynumber: 8.5 Consensus size: 6
9221860 AAATTACACA
*
9221870 TTTTA- TTTTAT TTTTAT TTTTAT TCTTTCT ATTTTA- TTTTA- TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT T-TTTAT -TTTTAT TTTTAT TTTTAT
9221917 TTT
1 TTT
9221920 GCAGGTAGAC
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
5 15 0.38
6 16 0.41
7 7 0.18
8 1 0.03
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTTAT
Found at i:9225856 original size:41 final size:41
Alignment explanation
Indices: 9225799--9225971 Score: 181
Period size: 41 Copynumber: 4.2 Consensus size: 41
9225789 GTAAGTTCTG
*
9225799 GCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATATCAA
1 GCTTTATGTCTAGCAGGCTTTATGCCGGTGAATTATATCAA
*
9225840 GCTTTATGTCTAGCAGGC-TCAGTGCCGGTGAATTATATC-A
1 GCTTTATGTCTAGCAGGCTTTA-TGCCGGTGAATTATATCAA
* * * * * **
9225880 GACCTTATGTCTAGCAGGCTTTGTGTCGGTGAAATGTATCGG
1 G-CTTTATGTCTAGCAGGCTTTATGCCGGTGAATTATATCAA
* * **
9225922 GCTTTGTGCCTAGCAGGCTTTATGCCGGTGTTTTATA-CAA
1 GCTTTATGTCTAGCAGGCTTTATGCCGGTGAATTATATCAA
9225962 GGCTTTATGT
1 -GCTTTATGT
9225972 TCTATAAATC
Statistics
Matches: 105, Mismatches: 22, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
40 5 0.05
41 98 0.93
42 2 0.02
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.35
Consensus pattern (41 bp):
GCTTTATGTCTAGCAGGCTTTATGCCGGTGAATTATATCAA
Found at i:9226910 original size:139 final size:139
Alignment explanation
Indices: 9226755--9227034 Score: 332
Period size: 139 Copynumber: 2.0 Consensus size: 139
9226745 ATGTATTGTG
* * * *
9226755 TATATGTTGCCCATTTGTTATATATATACTGTTCAATCTTGGTGTAAGAA-TACTGCTCAATTTG
1 TATATGTTGCCCATTTGCTATATATATACTGTTAAATCTTGGTGTAA-AAGTACTACTAAATTTG
* * * * ** *
9226819 GTATGTATATGTTTCCTAATTGTTGTATATCTATGCTG-TTAAATTTTGGTGTA-AAGTGCTGTT
65 GTATGTATATGCTGCCCAATTGTTGTATA--TAAGCTGCCCAAATTTTGGTGTATAAATGCTGTT
9226882 AAATTTGGTATA
128 AAATTTGGTATA
* * * * * * *
9226894 TATATGTTGTCTATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTATTAAATTTGG
1 TATATGTTGCCCATTTGCTATATATATACTGTTAAATCTTGGTGTAAAAGTACTACTAAATTTGG
* *
9226959 TATGTATATGCTGCCCATTTGTTGTATATAAGCTGCCCAAATTTTGGTGTATAAATGCTGTTTAA
66 TATGTATATGCTGCCCAATTGTTGTATATAAGCTGCCCAAATTTTGGTGTATAAATGCTGTTAAA
9227024 TTTGGTATA
131 TTTGGTATA
9227033 TA
1 TA
9227035 ATTGCTATTC
Statistics
Matches: 118, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
137 6 0.05
138 15 0.13
139 97 0.82
ACGTcount: A:0.26, C:0.10, G:0.19, T:0.46
Consensus pattern (139 bp):
TATATGTTGCCCATTTGCTATATATATACTGTTAAATCTTGGTGTAAAAGTACTACTAAATTTGG
TATGTATATGCTGCCCAATTGTTGTATATAAGCTGCCCAAATTTTGGTGTATAAATGCTGTTAAA
TTTGGTATA
Found at i:9226916 original size:70 final size:68
Alignment explanation
Indices: 9226755--9227034 Score: 308
Period size: 70 Copynumber: 4.0 Consensus size: 68
9226745 ATGTATTGTG
* * * * * * *
9226755 TATATGTTGCCCATTTGTTATATATATACTGTTCAATCTTGGTGTAAGAATACTGCTCAATTTGG
1 TATATGTTGCCCATTTGTTGTATATATGCTGTTAAATTTTGGTGTAA-AATGCTGTTAAATTTGG
*
9226820 TATG
65 TATA
* * * *
9226824 TATATGTTTCCTAATTGTTGTATATCTATGCTGTTAAATTTTGGTGTAAAGTGCTGTTAAATTTG
1 TATATGTTGCCCATTTGTTGTATA--TATGCTGTTAAATTTTGGTGTAAAATGCTGTTAAATTTG
9226889 GTATA
64 GTATA
* * * *
9226894 TATATGTTGTCTATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTATTAAATTTGG
1 TATATGTTGCCCATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAA-TGCTGTTAAATTTGG
*
9226959 TATG
65 TATA
* * ** *
9226963 TATATGCTGCCCATTTGTTGTATATAAGCTGCCCAAATTTTGGTGTATAAATGCTGTTTAATTTG
1 TATATGTTGCCCATTTGTTGTATATATGCTG-TTAAATTTTGGTGTA-AAATGCTGTTAAATTTG
9227028 GTATA
64 GTATA
9227033 TA
1 TA
9227035 ATTGCTATTC
Statistics
Matches: 177, Mismatches: 29, Indels: 9
0.82 0.13 0.04
Matches are distributed among these distances:
68 24 0.14
69 63 0.36
70 67 0.38
71 23 0.13
ACGTcount: A:0.26, C:0.10, G:0.19, T:0.46
Consensus pattern (68 bp):
TATATGTTGCCCATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAATGCTGTTAAATTTGGT
ATA
Found at i:9226934 original size:24 final size:23
Alignment explanation
Indices: 9226850--9226956 Score: 89
Period size: 22 Copynumber: 4.7 Consensus size: 23
9226840 GTTGTATATC
9226850 TATGCTGTTAAATTTTGGTGTAA
1 TATGCTGTTAAATTTTGGTGTAA
*
9226873 -AGTGCTGTTAAA-TTTGGTATATA
1 TA-TGCTGTTAAATTTTGGTGTA-A
* *
9226896 TATGTTGTCT--A-TTTGCTGTATA
1 TATGCTGT-TAAATTTTGGTGTA-A
9226918 TATGCTGTTAAATTTTGGTGTAA
1 TATGCTGTTAAATTTTGGTGTAA
* *
9226941 AAGTGCTATTAAATTT
1 TA-TGCTGTTAAATTT
9226957 GGTATGTATA
Statistics
Matches: 68, Mismatches: 8, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
21 1 0.01
22 26 0.38
23 19 0.28
24 22 0.32
ACGTcount: A:0.27, C:0.06, G:0.20, T:0.48
Consensus pattern (23 bp):
TATGCTGTTAAATTTTGGTGTAA
Found at i:9227027 original size:23 final size:23
Alignment explanation
Indices: 9226851--9227058 Score: 106
Period size: 23 Copynumber: 9.0 Consensus size: 23
9226841 TTGTATATCT
9226851 ATGCTGTTAAATTTTGGTGTA-AA
1 ATGCTGTTAAA-TTTGGTGTATAA
* * *
9226874 GTGCTGTTAAATTTGGTATATAT
1 ATGCTGTTAAATTTGGTGTATAA
* * *
9226897 ATGTTGTCT--ATTTGCTGTATAT
1 ATGCTGT-TAAATTTGGTGTATAA
9226919 ATGCTGTTAAATTTTGGTGTA-AA
1 ATGCTGTTAAA-TTTGGTGTATAA
* * * *
9226942 AGTGCTATTAAATTTGGTATGTAT
1 A-TGCTGTTAAATTTGGTGTATAA
*** *
9226966 ATGCTG-CCCATTTGTTGTATATA
1 ATGCTGTTAAATTTGGTGTATA-A
**
9226989 A-GCTGCCCAAATTTTGGTGTATAA
1 ATGCTG-TTAAA-TTTGGTGTATAA
* *
9227013 ATGCTGTTTAATTTGGTATATAA
1 ATGCTGTTAAATTTGGTGTATAA
* * *
9227036 TTGCTATTCAAA-TTGATGTATAA
1 ATGCTGTT-AAATTTGGTGTATAA
9227059 GAGTTGTCCA
Statistics
Matches: 138, Mismatches: 34, Indels: 26
0.70 0.17 0.13
Matches are distributed among these distances:
21 1 0.01
22 38 0.28
23 57 0.41
24 28 0.20
25 14 0.10
ACGTcount: A:0.28, C:0.08, G:0.19, T:0.45
Consensus pattern (23 bp):
ATGCTGTTAAATTTGGTGTATAA
Found at i:9229526 original size:9 final size:9
Alignment explanation
Indices: 9229512--9229539 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
9229502 ACCAACTTGC
9229512 AATCATATA
1 AATCATATA
9229521 AATCATATA
1 AATCATATA
9229530 AATCATATA
1 AATCATATA
9229539 A
1 A
9229540 TATAAGTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
AATCATATA
Found at i:9230952 original size:22 final size:21
Alignment explanation
Indices: 9230919--9230960 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
9230909 TAATTTTACC
*
9230919 AAAAATCAATCAACA-AAGGAG
1 AAAAAACAATC-ACATAAGGAG
9230940 AAAAAACATATCACATAAGGA
1 AAAAAACA-ATCACATAAGGA
9230961 TTATAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.62, C:0.14, G:0.12, T:0.12
Consensus pattern (21 bp):
AAAAAACAATCACATAAGGAG
Found at i:9235114 original size:44 final size:44
Alignment explanation
Indices: 9235057--9235264 Score: 206
Period size: 44 Copynumber: 4.8 Consensus size: 44
9235047 GGTGGCTTAA
* * *
9235057 ATCTGCTTCACTACTGTTTAGGAAGATAAGATTTACCGTCTTCG
1 ATCTGCTTCACTACTGCTTAGGGAGATAAGATCTACCGTCTTCG
* * * * *
9235101 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAACATCTTTG
1 ATCTGCTTCACTACTGCTTAGGGAGATAAGATCTACCGTCTTCG
* * * ** * **
9235145 ACCTGCTCCACTACTGCTTAGGGAGATAGGA-CTAGTGGCTTAA
1 ATCTGCTTCACTACTGCTTAGGGAGATAAGATCTACCGTCTTCG
* *
9235188 ATCTGCTTCACTACTGCTTAGGAAGATGAGAT-T-CGCTGTCTTCG
1 ATCTGCTTCACTACTGCTTAGGGAGATAAGATCTAC-C-GTCTTCG
*
9235232 ATCTGCTTCACTACTGCTTAGGGAGATGAGATC
1 ATCTGCTTCACTACTGCTTAGGGAGATAAGATC
9235265 CTTTATTTTA
Statistics
Matches: 134, Mismatches: 26, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
43 33 0.25
44 101 0.75
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (44 bp):
ATCTGCTTCACTACTGCTTAGGGAGATAAGATCTACCGTCTTCG
Done.