Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 33 of 207
Found at i:9459431 original size:2 final size:2
Alignment explanation
Indices: 9459424--9459456 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
9459414 TATTCAAACC
9459424 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9459457 GAAATCAAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9473535 original size:20 final size:21
Alignment explanation
Indices: 9473510--9473561 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
9473500 CAGCCTTTAT
9473510 GGCTCAACATA-GGTTGATGC
1 GGCTCAACATAGGGTTGATGC
* *
9473530 GGCTCAACATAGGGTTGCTGT
1 GGCTCAACATAGGGTTGATGC
*
9473551 GGCTCAGCATA
1 GGCTCAACATA
9473562 AGGCTACTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 11 0.39
21 17 0.61
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.25
Consensus pattern (21 bp):
GGCTCAACATAGGGTTGATGC
Found at i:9477876 original size:4 final size:4
Alignment explanation
Indices: 9477867--9477917 Score: 50
Period size: 4 Copynumber: 11.8 Consensus size: 4
9477857 AGTTTTATGC
9477867 TTTA TTTA TTT- TTTA TTTTA TTTA TTTA TTTAGA TTTA TTTTA TTTTA
1 TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTT--A TTTA -TTTA -TTTA
9477915 TTT
1 TTT
9477918 TATTATGCAC
Statistics
Matches: 42, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
3 3 0.07
4 22 0.52
5 13 0.31
6 4 0.10
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:9477939 original size:5 final size:5
Alignment explanation
Indices: 9477867--9477921 Score: 53
Period size: 5 Copynumber: 11.2 Consensus size: 5
9477857 AGTTTTATGC
* *
9477867 TTTAT TTATTT TTTAT TTTA- TTTA- TTTA- TTTAGA TTTAT TTTAT TTTAT
1 TTTAT TT-TAT TTTAT TTTAT TTTAT TTTAT TTTA-T TTTAT TTTAT TTTAT
9477916 TTTAT T
1 TTTAT T
9477922 ATGCACTTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
4 12 0.27
5 24 0.55
6 8 0.18
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (5 bp):
TTTAT
Found at i:9481884 original size:11 final size:11
Alignment explanation
Indices: 9481868--9481892 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
9481858 CATTTAAGAG
9481868 AAAATGAGTGA
1 AAAATGAGTGA
9481879 AAAATGAGTGA
1 AAAATGAGTGA
9481890 AAA
1 AAA
9481893 CAGAAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.00, G:0.24, T:0.16
Consensus pattern (11 bp):
AAAATGAGTGA
Found at i:9487491 original size:7 final size:7
Alignment explanation
Indices: 9487481--9487518 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
9487471 TTGTTTTTTT
9487481 AAAAATA
1 AAAAATA
9487488 AAAAATA
1 AAAAATA
9487495 AAAAATA
1 AAAAATA
9487502 AAAAATA
1 AAAAATA
**
9487509 GTAAATA
1 AAAAATA
9487516 AAA
1 AAA
9487519 TAAAAAGACA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.16
Consensus pattern (7 bp):
AAAAATA
Found at i:9488234 original size:21 final size:22
Alignment explanation
Indices: 9488210--9488280 Score: 78
Period size: 21 Copynumber: 3.4 Consensus size: 22
9488200 TTAGATTTCA
**
9488210 ATTTATTTTTGCAATTTAT-TT
1 ATTTATTTTTAAAATTTATATT
9488231 ATTTA-TTTTAAAATTTATATT
1 ATTTATTTTTAAAATTTATATT
*
9488252 ATTTA-TTTTAAAATTTTCTATT
1 ATTTATTTTTAAAA-TTTATATT
9488274 A-TTATTT
1 ATTTATTT
9488281 ATTTTAAGTT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
20 11 0.25
21 23 0.52
22 10 0.23
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (22 bp):
ATTTATTTTTAAAATTTATATT
Found at i:9488253 original size:25 final size:23
Alignment explanation
Indices: 9488229--9488320 Score: 89
Period size: 25 Copynumber: 3.9 Consensus size: 23
9488219 TGCAATTTAT
9488229 TTATTTATTTTAAAA-TTTA-TA
1 TTATTTATTTTAAAATTTTATTA
9488250 TTATTTATTTTAAAATTTTCTATTA
1 TTATTTATTTTAAAA-TTT-TATTA
**
9488275 TTATTTATTTTAAGTTTTTCATATA
1 TTATTTATTTTAAAATTTT-AT-TA
** *
9488300 TTATCCATTTTAAACTTTTAT
1 TTATTTATTTTAAAATTTTAT
9488321 ATGCATATTA
Statistics
Matches: 59, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
21 15 0.25
23 3 0.05
24 9 0.15
25 32 0.54
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.62
Consensus pattern (23 bp):
TTATTTATTTTAAAATTTTATTA
Found at i:9488276 original size:22 final size:21
Alignment explanation
Indices: 9488222--9488287 Score: 89
Period size: 21 Copynumber: 3.0 Consensus size: 21
9488212 TTATTTTTGC
9488222 AATTTAT-TTATTTATTTTAA
1 AATTTATATTATTTATTTTAA
9488242 AATTTATATTATTTATTTTAA
1 AATTTATATTATTTATTTTAA
9488263 AATTTTCTATTATTATTTATTTTAA
1 AA--TT-TA-TATTATTTATTTTAA
9488288 GTTTTTCATA
Statistics
Matches: 41, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
20 7 0.17
21 15 0.37
23 2 0.05
24 2 0.05
25 15 0.37
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (21 bp):
AATTTATATTATTTATTTTAA
Found at i:9491770 original size:65 final size:64
Alignment explanation
Indices: 9491666--9491840 Score: 219
Period size: 65 Copynumber: 2.7 Consensus size: 64
9491656 TATTCTATTA
* ** * *
9491666 TTACCTTAATGAGGTAAAGCCA-TTTTAAAGAACTGTGCTATCTAAGTTTGCTTTAATGAA-CAG
1 TTACCTTAA-GAGGTAAAGCCACTTTT-AAGAAGTGTGCTATCTAAGTCCGCTTCAAAGAAGCA-
9491729 TG
63 TG
*
9491731 TTACCTTCAAGAGGTAAAGCCACTTTTAAGAAGTGTGCTATCTATGTCCGCTTCAAAGAAGCATG
1 TTACCTT-AAGAGGTAAAGCCACTTTTAAGAAGTGTGCTATCTAAGTCCGCTTCAAAGAAGCATG
* *
9491796 TTACCTTAAAGAGGTAAAGTCACTTTAAAGAAGTGTGCTATCTAA
1 TTACCTT-AAGAGGTAAAGCCACTTTTAAGAAGTGTGCTATCTAA
9491841 ATCCTCTTTA
Statistics
Matches: 97, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
65 89 0.92
66 8 0.08
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (64 bp):
TTACCTTAAGAGGTAAAGCCACTTTTAAGAAGTGTGCTATCTAAGTCCGCTTCAAAGAAGCATG
Found at i:9491856 original size:16 final size:16
Alignment explanation
Indices: 9491835--9491867 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
9491825 GAAGTGTGCT
9491835 ATCTAAATCCTCTTTA
1 ATCTAAATCCTCTTTA
9491851 ATCTAAATCCTCTTTA
1 ATCTAAATCCTCTTTA
9491867 A
1 A
9491868 AGAAGTGTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.24, G:0.00, T:0.42
Consensus pattern (16 bp):
ATCTAAATCCTCTTTA
Found at i:9496793 original size:24 final size:23
Alignment explanation
Indices: 9496732--9496795 Score: 83
Period size: 25 Copynumber: 2.7 Consensus size: 23
9496722 TTCTGACCCA
9496732 CAGCTCGTGTGAGCATTCTGATT
1 CAGCTCGTGTGAGCATTCTGATT
* *
9496755 CATAGCTCGTTTGAGCATTTTGATTT
1 C--AGCTCGTGTGAGCATTCTGA-TT
9496781 CAGCTCGTGTGAGCA
1 CAGCTCGTGTGAGCA
9496796 AACATTTACA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
23 1 0.03
24 13 0.37
25 18 0.51
26 3 0.09
ACGTcount: A:0.19, C:0.20, G:0.25, T:0.36
Consensus pattern (23 bp):
CAGCTCGTGTGAGCATTCTGATT
Found at i:9523787 original size:44 final size:44
Alignment explanation
Indices: 9523737--9523894 Score: 208
Period size: 44 Copynumber: 3.4 Consensus size: 44
9523727 TTGTCCCTTG
* *
9523737 TCACTTGTCACTGGTCAGATAAGTGTAGCTAAAGCTACCATTTA
1 TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTA
*
9523781 TCACTTGTCACTTATCACTGATTAGATAAGTGTAGCTAAAGCTACCACTTA
1 TCACTTG-------TCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTA
*
9523832 TCACTTGTCACTGATCAGATAAATGTAGCTAAAGCTACCACTTA
1 TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTA
*
9523876 ACACTTGTCACTGATCAGA
1 TCACTTGTCACTGATCAGA
9523895 AGTACTCAAA
Statistics
Matches: 101, Mismatches: 6, Indels: 14
0.83 0.05 0.12
Matches are distributed among these distances:
44 60 0.59
51 41 0.41
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (44 bp):
TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTA
Found at i:9523793 original size:51 final size:50
Alignment explanation
Indices: 9523724--9523887 Score: 205
Period size: 51 Copynumber: 3.4 Consensus size: 50
9523714 TCACATTTAT
* *
9523724 CACTTGTCCCTTGTCACTTGTCACTGGTCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTGTCACTTGTCACT-GTCAGATAAGTGTAGCTAAAGCTAC
* * *
9523775 CATTTATCACTTGTCACTTATCACTGATTAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTGTCACTTGTCACTG-TCAGATAAGTGTAGCTAAAGCTAC
*
9523826 CACTTATCACTTGTCAC-TG--A---TCAGATAAATGTAGCTAAAGCTAC
1 CACTTATCACTTGTCACTTGTCACTGTCAGATAAGTGTAGCTAAAGCTAC
*
9523870 CACTTAACACTTGTCACT
1 CACTTATCACTTGTCACT
9523888 GATCAGAAGT
Statistics
Matches: 101, Mismatches: 10, Indels: 10
0.83 0.08 0.08
Matches are distributed among these distances:
44 38 0.38
48 1 0.01
50 2 0.02
51 60 0.59
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (50 bp):
CACTTATCACTTGTCACTTGTCACTGTCAGATAAGTGTAGCTAAAGCTAC
Found at i:9529997 original size:15 final size:16
Alignment explanation
Indices: 9529977--9530010 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
9529967 TTTTTTTTTC
9529977 TTAC-AATTTAGTCAT
1 TTACAAATTTAGTCAT
*
9529992 TTACAAATTTAGTTAT
1 TTACAAATTTAGTCAT
9530008 TTA
1 TTA
9530011 ATTGATATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.35, C:0.09, G:0.06, T:0.50
Consensus pattern (16 bp):
TTACAAATTTAGTCAT
Found at i:9540381 original size:49 final size:50
Alignment explanation
Indices: 9540317--9540590 Score: 162
Period size: 50 Copynumber: 5.4 Consensus size: 50
9540307 CAAAGCTATG
* *
9540317 TCCCAGACATAGTCTTACATGGGATGTTTTC-T-GTACTGCCAATGCCATA
1 TCCCAGACATGGTCTTACATGGGA-GTTCTCATAGTACTGCCAATGCCATA
* * * ** * *
9540366 TCCCAGATATGGTCTTACTTGGGAGTTCTCATATTGGTGCCCATGCCATG
1 TCCCAGACATGGTCTTACATGGGAGTTCTCATAGTACTGCCAATGCCATA
* ** ** ** * * *
9540416 TCCCAGACATGGTCTTAC-GGGGTACCTCTCATCTTGGTGCTAACGCCATG
1 TCCCAGACATGGTCTTACATGGG-AGTTCTCATAGTACTGCCAATGCCATA
* ** * *
9540466 TTCCAGACATGGTCTTACATGGGACCTCTCAT-CT-CGGTGCCAACGCCATA
1 TCCCAGACATGGTCTTACATGGGAGTTCTCATAGTAC--TGCCAATGCCATA
* ** * *
9540516 TCCCAGACATGGTCTTATATGGGACCTCTCATAATCTCAATGATGCCAATGCCATA
1 TCCCAGACATGGTCTTACATGGGAGTTCTCAT-A-GT--A--CTGCCAATGCCATA
9540572 TCCCAGACATGGTCTTACA
1 TCCCAGACATGGTCTTACA
9540591 CTGGCTCACA
Statistics
Matches: 183, Mismatches: 28, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
48 5 0.03
49 26 0.14
50 117 0.64
51 3 0.02
53 2 0.01
56 30 0.16
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.30
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGGGAGTTCTCATAGTACTGCCAATGCCATA
Found at i:9540421 original size:50 final size:49
Alignment explanation
Indices: 9540353--9540589 Score: 240
Period size: 50 Copynumber: 4.6 Consensus size: 49
9540343 TTTTCTGTAC
* * ** *
9540353 TGCCAATGCCATATCCCAGATATGGTCTTACTTGGGAGTTCTCATATTGG
1 TGCCAACGCCATATCCCAGACATGGTCTTAC-TGGGACCTCTCATCTTGG
* * * *
9540403 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGTACCTCTCATCTTGG
1 TGCCAACGCCATATCCCAGACATGGTCTTACTGGG-ACCTCTCATCTTGG
* * * *
9540453 TGCTAACGCCATGTTCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATATCCCAGACATGGTCTTAC-TGGGACCTCTCATCTTGG
* *
9540503 TGCCAACGCCATATCCCAGACATGGTCTTATATGGGACCTCTCATAATCTCAATGA
1 TGCCAACGCCATATCCCAGACATGGTCTTA-CTGGGACCTCTC---ATCT---TGG
*
9540559 TGCCAATGCCATATCCCAGACATGGTCTTAC
1 TGCCAACGCCATATCCCAGACATGGTCTTAC
9540590 ACTGGCTCAC
Statistics
Matches: 157, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
49 3 0.02
50 117 0.75
51 3 0.02
53 4 0.03
56 30 0.19
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (49 bp):
TGCCAACGCCATATCCCAGACATGGTCTTACTGGGACCTCTCATCTTGG
Found at i:9540635 original size:48 final size:48
Alignment explanation
Indices: 9540564--9540684 Score: 206
Period size: 48 Copynumber: 2.5 Consensus size: 48
9540554 AATGATGCCA
* *
9540564 ATGCCATATCCCAGACATGGTCTTACACTGGCTCACATATCGATGTTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGATGTCG
*
9540612 ATGCCATGTCCCAGACATGGTCTTACACTTGCTCACATATCGATGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGATGTCG
*
9540660 ATACCATGTCCCAGACATGGTCTTA
1 ATGCCATGTCCCAGACATGGTCTTA
9540685 TACGAGATCG
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 69 1.00
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGATGTCG
Found at i:9540704 original size:48 final size:48
Alignment explanation
Indices: 9540567--9540706 Score: 138
Period size: 48 Copynumber: 2.9 Consensus size: 48
9540557 GATGCCAATG
* * * * * *
9540567 CCATATCCCAGACATGGTCTTACACTG-GCTCACATATCGATGTTGATG
1 CCATGTCCCAGACATGGTCTTACAC-GAGATCACACACCGATGTCGATA
** * * *
9540615 CCATGTCCCAGACATGGTCTTACACTTGCTCACATATCGATGTCGATA
1 CCATGTCCCAGACATGGTCTTACACGAGATCACACACCGATGTCGATA
* * *
9540663 CCATGTCCCAGACATGGTCTTATACGAGATCGCACGCCGATGTC
1 CCATGTCCCAGACATGGTCTTACACGAGATCACACACCGATGTC
9540707 ATATCTCAGA
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
48 79 1.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (48 bp):
CCATGTCCCAGACATGGTCTTACACGAGATCACACACCGATGTCGATA
Found at i:9542944 original size:28 final size:28
Alignment explanation
Indices: 9542913--9542967 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
9542903 AATCTTGATG
9542913 TTCTTACCTTGTGCTATTGATTTCAATT
1 TTCTTACCTTGTGCTATTGATTTCAATT
9542941 TTCTTACCTTGTGCTATTGATTTCAAT
1 TTCTTACCTTGTGCTATTGATTTCAAT
9542968 CTTTAACTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.18, C:0.18, G:0.11, T:0.53
Consensus pattern (28 bp):
TTCTTACCTTGTGCTATTGATTTCAATT
Found at i:9543575 original size:30 final size:31
Alignment explanation
Indices: 9543520--9543587 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
9543510 ACCCCTAAAA
** * **
9543520 TATTTACACTATTGGTCCTTCAAATTTTTTG
1 TATTTACACTATTAATCCCTCAAATTTTGAG
9543551 TATTTACACT-TTAATCCCTCAAATTTTGAG
1 TATTTACACTATTAATCCCTCAAATTTTGAG
9543581 TATTTAC
1 TATTTAC
9543588 TCTTGGGCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 22 0.69
31 10 0.31
ACGTcount: A:0.26, C:0.18, G:0.07, T:0.49
Consensus pattern (31 bp):
TATTTACACTATTAATCCCTCAAATTTTGAG
Found at i:9558111 original size:7 final size:7
Alignment explanation
Indices: 9558099--9558123 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
9558089 CTCCTACTAC
9558099 ATTTATT
1 ATTTATT
9558106 ATTTATT
1 ATTTATT
9558113 ATTTATT
1 ATTTATT
9558120 ATTT
1 ATTT
9558124 CTAAGTCGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
ATTTATT
Found at i:9558846 original size:29 final size:29
Alignment explanation
Indices: 9558804--9558864 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
9558794 TAGTTTAGTC
9558804 ATTTCTTATTTTGGTAAGTGAGGGAGTTG
1 ATTTCTTATTTTGGTAAGTGAGGGAGTTG
9558833 ATTTCTTATTTTGGTAAGTGAGGGAGTTG
1 ATTTCTTATTTTGGTAAGTGAGGGAGTTG
9558862 ATT
1 ATT
9558865 CATGGTCCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.21, C:0.03, G:0.30, T:0.46
Consensus pattern (29 bp):
ATTTCTTATTTTGGTAAGTGAGGGAGTTG
Found at i:9560018 original size:29 final size:31
Alignment explanation
Indices: 9559964--9560024 Score: 99
Period size: 30 Copynumber: 2.0 Consensus size: 31
9559954 GAATCAAAGT
*
9559964 TAAGAAATTATTTTTTTAATA-TTTTTTATA
1 TAAGAAATTACTTTTTTAATAGTTTTTTATA
9559994 TAAGAAATT-CTTTTTTAATAGTTTTTTATA
1 TAAGAAATTACTTTTTTAATAGTTTTTTATA
9560024 T
1 T
9560025 TATTAATATT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 10 0.34
30 19 0.66
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.59
Consensus pattern (31 bp):
TAAGAAATTACTTTTTTAATAGTTTTTTATA
Found at i:9560353 original size:18 final size:18
Alignment explanation
Indices: 9560332--9560372 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
9560322 AAATAAACTT
9560332 TTTTTGAAATATAATTTA
1 TTTTTGAAATATAATTTA
** *
9560350 TTTTTGTTATGTAATTTA
1 TTTTTGAAATATAATTTA
9560368 TTTTT
1 TTTTT
9560373 ACTCTACAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.66
Consensus pattern (18 bp):
TTTTTGAAATATAATTTA
Found at i:9562253 original size:53 final size:53
Alignment explanation
Indices: 9562178--9562285 Score: 153
Period size: 53 Copynumber: 2.0 Consensus size: 53
9562168 ACTATGCAAT
* * *
9562178 TGATATTGTTACTGTTACTGTATTGACTAGCATGTTGTGCTATATGACTGATA
1 TGATATTGTTACTGTTACTGTATTGACTAGCATGATATGCTACATGACTGATA
* ** *
9562231 TGATATTGTTACTGTTATTGTATTGTTTAGCATGATATGCTACATGATTGATA
1 TGATATTGTTACTGTTACTGTATTGACTAGCATGATATGCTACATGACTGATA
9562284 TG
1 TG
9562286 CCATTATTTC
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.25, C:0.09, G:0.20, T:0.45
Consensus pattern (53 bp):
TGATATTGTTACTGTTACTGTATTGACTAGCATGATATGCTACATGACTGATA
Found at i:9567383 original size:19 final size:20
Alignment explanation
Indices: 9567359--9567400 Score: 68
Period size: 21 Copynumber: 2.1 Consensus size: 20
9567349 GCAATCTTAA
9567359 ATATG-ATCTTAGATATGAT
1 ATATGAATCTTAGATATGAT
9567378 ATATGAAATCTTAGATATGAT
1 ATATG-AATCTTAGATATGAT
9567399 AT
1 AT
9567401 GCAATCTTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 5 0.24
21 16 0.76
ACGTcount: A:0.40, C:0.05, G:0.14, T:0.40
Consensus pattern (20 bp):
ATATGAATCTTAGATATGAT
Found at i:9567401 original size:19 final size:19
Alignment explanation
Indices: 9567364--9567419 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 19
9567354 CTTAAATATG
9567364 ATCTTAGATATGATATATGAA
1 ATCTTAGATATG--ATATGAA
*
9567385 ATCTTAGATATGATATGCA
1 ATCTTAGATATGATATGAA
9567404 ATCTTAGA-A-GATATGA
1 ATCTTAGATATGATATGA
9567420 TTTTGTAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.18
18 1 0.03
19 14 0.42
21 12 0.36
ACGTcount: A:0.41, C:0.07, G:0.16, T:0.36
Consensus pattern (19 bp):
ATCTTAGATATGATATGAA
Found at i:9567418 original size:22 final size:23
Alignment explanation
Indices: 9567369--9567435 Score: 70
Period size: 23 Copynumber: 3.0 Consensus size: 23
9567359 ATATGATCTT
*
9567369 AGATATGATATATGAAATCTT---
1 AGATATGAT-TATGCAATCTTAGA
9567390 AGATATGA-TATGCAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
* *
9567412 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
9567435 A
1 A
9567436 ATTTAATTTG
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
19 10 0.26
21 8 0.21
22 8 0.21
23 13 0.33
ACGTcount: A:0.40, C:0.06, G:0.16, T:0.37
Consensus pattern (23 bp):
AGATATGATTATGCAATCTTAGA
Found at i:9567760 original size:3 final size:3
Alignment explanation
Indices: 9567752--9567790 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
9567742 TGTTATTAAG
* * *
9567752 TTA TTA TTA TTG TTG TTA TTA TTA TCA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
9567791 CTATATATAC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:9567942 original size:17 final size:17
Alignment explanation
Indices: 9567920--9567954 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
9567910 ATAACTTATA
* *
9567920 TATATATATTTACATTT
1 TATATACATATACATTT
9567937 TATATACATATACATTT
1 TATATACATATACATTT
9567954 T
1 T
9567955 TTATTTCCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.54
Consensus pattern (17 bp):
TATATACATATACATTT
Found at i:9568151 original size:32 final size:30
Alignment explanation
Indices: 9568110--9568168 Score: 82
Period size: 32 Copynumber: 1.9 Consensus size: 30
9568100 ATTATTTGTT
* *
9568110 TATATATATGTGTAATTATCTTTTTTATAATC
1 TATATATATGTAT-ATAAT-TTTTTTATAATC
9568142 TATATATATGTATATAATTTTTTTATA
1 TATATATATGTATATAATTTTTTTATA
9568169 TACGTACATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 9 0.36
31 4 0.16
32 12 0.48
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (30 bp):
TATATATATGTATATAATTTTTTTATAATC
Found at i:9568327 original size:8 final size:8
Alignment explanation
Indices: 9568316--9568350 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
9568306 GCTTTGCATG
9568316 TTATTGAT
1 TTATTGAT
9568324 TTATT--T
1 TTATTGAT
9568330 TTATTGAT
1 TTATTGAT
9568338 TTATTGAT
1 TTATTGAT
9568346 TTATT
1 TTATT
9568351 TGTTTATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 6 0.24
8 19 0.76
ACGTcount: A:0.23, C:0.00, G:0.09, T:0.69
Consensus pattern (8 bp):
TTATTGAT
Found at i:9568335 original size:14 final size:14
Alignment explanation
Indices: 9568316--9568342 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9568306 GCTTTGCATG
9568316 TTATTGATTTATTT
1 TTATTGATTTATTT
9568330 TTATTGATTTATT
1 TTATTGATTTATT
9568343 GATTTATTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.70
Consensus pattern (14 bp):
TTATTGATTTATTT
Found at i:9570678 original size:16 final size:16
Alignment explanation
Indices: 9570640--9570682 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
9570630 CCTCTCTTCT
9570640 TTTGCATT-CA-TAGC
1 TTTGCATTGCATTAGC
*
9570654 ATT-CATTGCATTAGC
1 TTTGCATTGCATTAGC
9570669 TTTGCATTGCATTA
1 TTTGCATTGCATTA
9570683 TATACATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 4 0.17
14 4 0.17
15 6 0.25
16 10 0.42
ACGTcount: A:0.23, C:0.19, G:0.14, T:0.44
Consensus pattern (16 bp):
TTTGCATTGCATTAGC
Found at i:9573452 original size:44 final size:43
Alignment explanation
Indices: 9573378--9573914 Score: 394
Period size: 44 Copynumber: 12.2 Consensus size: 43
9573368 TAGCAGGTTC
* * *
9573378 TGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAGATAT
1 TGTCTTCC-ATATTGGTGGCGAAGTAGATCGAAGATGCAGATCT
* * * *
9573421 TGTCTTTCCATATTGGTGGCGGAGTTGATCGAAGAAAGTAGATCT
1 TGTC-TTCCATATTGGTGGCGAAGTAGATCGAAG-ATGCAGATCT
* * * * *
9573466 TGTCTT-CATGTATTGG-CGTGAAGTAGATCAAAGATAGCAGGTCC
1 TGTCTTCCA--TATTGGTGGCGAAGTAGATCGAAGAT-GCAGATCT
* * * *
9573510 TGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGTAGATAT
1 TGTCTTCC-ATATTGGTGGCGAAGTAGATCGAAGATGCAGATCT
* * * *
9573553 TGTCTTCCCATATTGTTGGCGGAGTAGATTGAAGAAAGCAGATCT
1 TGTCTT-CCATATTGGTGGCGAAGTAGATCGAAG-ATGCAGATCT
* * *
9573598 TGTCTT-CATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCC
1 TGTCTTCCA--TATTGGTGGCGAAGTAGATCGAAGAT-GCAGATCT
* * * * *
9573642 TGTCTTTCTATATTGGTAGTGAAGTGGATCGAAGATACAGATCT
1 TGTC-TTCCATATTGGTGGCGAAGTAGATCGAAGATGCAGATCT
* *
9573686 TGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATAT
1 TGTCTT-CCATATTGGTGGCGAAGTAGATCGAAG-ATGCAGATCT
* * *
9573731 TGTCTT-CATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGGTCT
1 TGTCTTCCA--TATTGGTGGCGAAGTAGATCGAAGAT-GCAGATCT
** *
9573775 TGTCTTCCTATATTGGT-AAGAAGTGGATCGAAGATGCAGATCT
1 TGTCTTCC-ATATTGGTGGCGAAGTAGATCGAAGATGCAGATCT
* * *
9573818 TGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCT
1 TGTCTT-CCATATTGGTGGCGAAGTAGATCGAAG-ATGCAGATCT
* * *
9573863 TGTCTT-CATGTATTAG-CGTGAAGTAGATCGAAGATAGCAGATCT
1 TGTCTTCCA--TATTGGTGGCGAAGTAGATCGAAGAT-GCAGATCT
*
9573907 TGCCTTCC
1 TGTCTTCC
9573915 TGCACCGACA
Statistics
Matches: 390, Mismatches: 71, Indels: 64
0.74 0.14 0.12
Matches are distributed among these distances:
43 65 0.17
44 227 0.58
45 95 0.24
46 3 0.01
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (43 bp):
TGTCTTCCATATTGGTGGCGAAGTAGATCGAAGATGCAGATCT
Found at i:9573601 original size:132 final size:132
Alignment explanation
Indices: 9573363--9573902 Score: 882
Period size: 132 Copynumber: 4.1 Consensus size: 132
9573353 GGAGATCAGT
* *
9573363 GAAGATAGCAGGTTCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATATTGTCTTT
1 GAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATATTGTCTTC
* * *
9573428 CCATATTGGTGGCGGAGTTGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGA
66 CCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGA
9573493 TC
131 TC
* *
9573495 AAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGTAGATATTGTCTTC
1 GAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATATTGTCTTC
* * *
9573560 CCATATTGTTGGCGGAGTAGATTGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGA
66 CCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGA
9573625 TC
131 TC
* * * *
9573627 GAAGATAGCAGATCCTGTCTTTCTATATTGGTAGTGAAGTGGATCGAAGATACAGATCTTGTCTT
1 GAAGATAGCAGGTCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAGATATTGTCTT
*
9573692 CCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAG
65 CCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAG
9573757 ATC
130 ATC
* * *
9573760 GAAGATAGCAGGTCTTGTCTTCCTATATTGGTAAGAAGTGGATCGAAGATGCAGATCTTGTCTTC
1 GAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATATTGTCTTC
* * *
9573825 CCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTAGCGTGAAGTAGA
66 CCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGA
9573890 TC
131 TC
9573892 GAAGATAGCAG
1 GAAGATAGCAG
9573903 ATCTTGCCTT
Statistics
Matches: 380, Mismatches: 27, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
132 259 0.68
133 121 0.32
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (132 bp):
GAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATATTGTCTTC
CCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGA
TC
Found at i:9573846 original size:265 final size:264
Alignment explanation
Indices: 9573363--9573915 Score: 890
Period size: 265 Copynumber: 2.1 Consensus size: 264
9573353 GGAGATCAGT
* * * *
9573363 GAAGATAGCAGGTTCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATATTGTCTTT
1 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATACAGATATTGTCTTC
* * * *
9573428 CCATATTGGTGGCGGAGTTGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGA
66 CCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAGA
* *
9573493 TCAAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGTAGATATTGTCT
131 TCAAAGATAGCAGGTCCTGTCTTCCTATATTGGTAAGAAGTGGATCGAAGATGCAGATATTGTCT
* * * * *
9573558 TCCCATATTGTTGGCGGAGTAGATTGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTA
196 TCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTAGCGTGAAGTA
9573623 GATC
261 GATC
* *
9573627 GAAGATAGCAGATCCTGTCTTTCTATATTGGTAGTGAAGTGGATCGAAGATACAGATCTTGTCTT
1 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGATACAGATATTGTCTT
9573692 CCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAG
65 CCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAG
* * *
9573757 ATCGAAGATAGCAGGTCTTGTCTTCCTATATTGGTAAGAAGTGGATCGAAGATGCAGATCTTGTC
130 ATCAAAGATAGCAGGTCCTGTCTTCCTATATTGGTAAGAAGTGGATCGAAGATGCAGATATTGTC
*
9573822 TTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTAGCGTGAAGT
195 TTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTAGCGTGAAGT
9573887 AGATC
260 AGATC
* *
9573892 GAAGATAGCAGATCTTGCCTTCCT
1 GAAGATAGCAGATCCTGTCTTCCT
9573916 GCACCGACAG
Statistics
Matches: 264, Mismatches: 24, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
264 31 0.12
265 233 0.88
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (264 bp):
GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATACAGATATTGTCTTC
CCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAGA
TCAAAGATAGCAGGTCCTGTCTTCCTATATTGGTAAGAAGTGGATCGAAGATGCAGATATTGTCT
TCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTAGCGTGAAGTA
GATC
Found at i:9573940 original size:45 final size:45
Alignment explanation
Indices: 9573882--9574029 Score: 115
Period size: 45 Copynumber: 3.3 Consensus size: 45
9573872 GTATTAGCGT
*
9573882 GAAGTAGATCGAAGATAGCAGATCTTGCCTTCCTGCACCGACAGC
1 GAAGCAGATCGAAGATAGCAGATCTTGCCTTCCTGCACCGACAGC
* * * * ***
9573927 GAAGCAGATCGAAGACACCAG-CCTTGCCTCCCTAG-GTTG-CAGC
1 GAAGCAGATCGAAGATAGCAGATCTTGCCTTCCT-GCACCGACAGC
* * * * * * *
9573970 GGAGCAG-TCTAAAAATAGTAGATCTTGCCTTCTTGCACCAACAGT
1 GAAGCAGATC-GAAGATAGCAGATCTTGCCTTCCTGCACCGACAGC
9574015 GAAGCAGATCGAAGA
1 GAAGCAGATCGAAGA
9574030 CACCAGCCTT
Statistics
Matches: 72, Mismatches: 25, Indels: 12
0.66 0.23 0.11
Matches are distributed among these distances:
42 2 0.03
43 17 0.24
44 20 0.28
45 31 0.43
46 2 0.03
ACGTcount: A:0.30, C:0.26, G:0.24, T:0.20
Consensus pattern (45 bp):
GAAGCAGATCGAAGATAGCAGATCTTGCCTTCCTGCACCGACAGC
Found at i:9574007 original size:88 final size:88
Alignment explanation
Indices: 9573896--9574213 Score: 449
Period size: 88 Copynumber: 3.6 Consensus size: 88
9573886 TAGATCGAAG
*
9573896 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTA
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
9573961 GGTTGCAGCGGAGCAGTCTAAAA
66 GGTTGCAGCGGAGCAGTCTAAAA
* * * * *
9573984 ATAGTAGATCTTGCCTTCTTGCACCAACAGTGAAGCAGATCGAAGACACCAGCCTTACCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
*
9574049 GGTTGCAGCGGAGCAGGCTAAAA
66 GGTTGCAGCGGAGCAGTCTAAAA
* ** * * *
9574072 ATAGCAGATATTTTCTTCCTACACCGACAGCGAAGTAGATCAAAGACACCAGCCTTGCCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
* **
9574137 GGTTGTAGTAGAGCAGGT-TAAAA
66 GGTTGCAGCGGAGCA-GTCTAAAA
* * *
9574160 ATAGCAGATCTTGCCTTCTTGCACCGACAGCGAAGCAGATCGATGACCCCAGCC
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCC
9574214 CTATCTCCCT
Statistics
Matches: 198, Mismatches: 31, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
88 197 0.99
89 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.20
Consensus pattern (88 bp):
ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
GGTTGCAGCGGAGCAGTCTAAAA
Found at i:9574026 original size:265 final size:264
Alignment explanation
Indices: 9573482--9574029 Score: 638
Period size: 265 Copynumber: 2.1 Consensus size: 264
9573472 CATGTATTGG
* * *
9573482 CGTGAAGTAGATCAAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGT
1 CGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATATTGGTAAGAAGTGGATCGAAGATGC
* * * *
9573547 AGATATTGTCTTCCCATATTGTTGGCGGAGTAGATTGAAGAAAGCAGATCTTGTCTTCATGTATT
66 AGATATTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
* * * * ** ** * **
9573612 GGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTTCTATATTGGTAGTGAAGTGGATCGAAGA
131 AGCGTGAAGTAGATCGAAGATAGCAGATCCTGCCTTCCTACACCGACAGCGAAGCAGATCGAAGA
* * * * * * *
9573677 TACAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATATTGTCTTCATGT
196 CACAGACCTTGTCCTCCCATA-TGGTGGCGAAGCAGATCGAAAAAAGCAGATATTGCCTTCATGC
****
9573742 ATTGG
260 ACCAA
*
9573747 CGTGAAGTAGATCGAAGATAGCAGGTCTTGTCTTCCTATATTGGTAAGAAGTGGATCGAAGATGC
1 CGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATATTGGTAAGAAGTGGATCGAAGATGC
* *
9573812 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATT
66 AGATATTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
* *
9573877 AGCGTGAAGTAGATCGAAGATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGA
131 AGCGTGAAGTAGATCGAAGATAGCAGATCCTGCCTTCCTACACCGACAGCGAAGCAGATCGAAGA
* * * *
9573942 CACCAG-CCTTG-CCTCCC-TA-GGTTGCAGCGGAGCAG-TCTAAAAATAGTAGATCTTGCCTTC
196 CA-CAGACCTTGTCCTCCCATATGG-TG--GCGAAGCAGATCGAAAAA-AGCAGATATTGCCTTC
*
9574002 TTGCACCAA
256 ATGCACCAA
*
9574011 CAGTGAAGCAGATCGAAGA
1 C-GTGAAGTAGATCGAAGA
9574030 CACCAGCCTT
Statistics
Matches: 237, Mismatches: 40, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
261 2 0.01
262 2 0.01
263 8 0.03
264 29 0.12
265 193 0.81
266 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (264 bp):
CGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATATTGGTAAGAAGTGGATCGAAGATGC
AGATATTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
AGCGTGAAGTAGATCGAAGATAGCAGATCCTGCCTTCCTACACCGACAGCGAAGCAGATCGAAGA
CACAGACCTTGTCCTCCCATATGGTGGCGAAGCAGATCGAAAAAAGCAGATATTGCCTTCATGCA
CCAA
Found at i:9574283 original size:44 final size:44
Alignment explanation
Indices: 9574213--9574422 Score: 262
Period size: 44 Copynumber: 4.8 Consensus size: 44
9574203 TGACCCCAGC
* * *
9574213 CCTATCTCCCTGGTCAACAGTAGAATAGGTTAAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* *
9574257 CCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGAGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* * * * *
9574301 TCTATCTCCCTGGGCAGCAGTGAAATAGATTGAAGATTGT-AGGT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGA-AT
* *
9574345 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* *
9574389 CCTATCTCCCTGAG-CAGCAGTGGAGTAAGTTGAA
1 CCTATCTCCCTG-GTCAGCAGTGGAATAGGTTGAA
9574423 AATAGCAGAT
Statistics
Matches: 140, Mismatches: 23, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
43 1 0.01
44 137 0.98
45 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (44 bp):
CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
Found at i:9574479 original size:132 final size:132
Alignment explanation
Indices: 9574157--9574482 Score: 290
Period size: 132 Copynumber: 2.5 Consensus size: 132
9574147 GAGCAGGTTA
* * ** * ** * *
9574157 AAAATAGCAGATCTTGCC-TTCTTGCACCGACAGCGAAGCAGATCGATGACCCCAGCCCTATCTC
1 AAAATAGCAGATCTTGCCTTTC-TGCACTGGCAATGAAGCAGATCGAAGACATCAGTCTTATCTC
*
9574221 CCTGGTCAACAGTAGAATAGGTTAAAGATTGTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGG
65 CCTGGTCAACAGTAGAATAGGTTAAAGATTGTGAATCCTATCTCCCTAGTCAGCAGTGGAATAAG
9574286 TTG
130 TTG
* * * * * ** * * *
9574289 AAGATTG-AGA-ATT--CTATCT-CCCTGGGCAGCAGTGAAATAGATTGAAGA-TTGTAGGTCTT
1 AAAATAGCAGATCTTGCCTTTCTGCACT-GGCA--A-TGAAGCAGATCGAAGACAT-CA-GTCTT
** * *
9574348 ATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAG-CAGCAGTGG
60 ATCTCCCTGGTCAACAGTAGAATAGGTTAAAGATTGTGAATCCTATCTCCCT-AGTCAGCAGTGG
*
9574412 AGTAAGTTG
124 AATAAGTTG
*
9574421 AAAATAGCAGATCTTGCCTTTCTGTACTGGCAATGAAGCAGATCGAAGACATCAGTCTTATC
1 AAAATAGCAGATCTTGCCTTTCTGCACTGGCAATGAAGCAGATCGAAGACATCAGTCTTATC
9574483 GCCTTGACGT
Statistics
Matches: 145, Mismatches: 35, Indels: 28
0.70 0.17 0.13
Matches are distributed among these distances:
127 2 0.01
128 5 0.03
129 2 0.01
130 2 0.01
131 15 0.10
132 85 0.59
133 19 0.13
134 4 0.03
136 9 0.06
137 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (132 bp):
AAAATAGCAGATCTTGCCTTTCTGCACTGGCAATGAAGCAGATCGAAGACATCAGTCTTATCTCC
CTGGTCAACAGTAGAATAGGTTAAAGATTGTGAATCCTATCTCCCTAGTCAGCAGTGGAATAAGT
TG
Found at i:9575227 original size:12 final size:12
Alignment explanation
Indices: 9575210--9575235 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
9575200 AGGATATGCA
9575210 ATCTTAGATATG
1 ATCTTAGATATG
9575222 ATCTTAGATATG
1 ATCTTAGATATG
9575234 AT
1 AT
9575236 ATATGCAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.42
Consensus pattern (12 bp):
ATCTTAGATATG
Found at i:9575258 original size:19 final size:20
Alignment explanation
Indices: 9575222--9575269 Score: 80
Period size: 19 Copynumber: 2.4 Consensus size: 20
9575212 CTTAGATATG
9575222 ATCTTAGATATGATATATGCA
1 ATCTTAGATATGA-ATATGCA
9575243 ATCTTAGATATG-ATATGCA
1 ATCTTAGATATGAATATGCA
9575262 ATCTTAGA
1 ATCTTAGA
9575270 AGATATGATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 15 0.56
21 12 0.44
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.38
Consensus pattern (20 bp):
ATCTTAGATATGAATATGCA
Found at i:9575291 original size:23 final size:22
Alignment explanation
Indices: 9575227--9575292 Score: 66
Period size: 19 Copynumber: 3.0 Consensus size: 22
9575217 ATATGATCTT
9575227 AGATATGATATATGCAATCTT---
1 AGATATG--ATATGCAATCTTAGA
9575248 AGATATGATATGCAATCTTAGA
1 AGATATGATATGCAATCTTAGA
* *
9575270 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGCAATCTTAGA
9575293 GATTTAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
19 12 0.31
21 7 0.18
22 8 0.21
23 12 0.31
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.38
Consensus pattern (22 bp):
AGATATGATATGCAATCTTAGA
Found at i:9575617 original size:3 final size:3
Alignment explanation
Indices: 9575609--9575656 Score: 51
Period size: 3 Copynumber: 16.0 Consensus size: 3
9575599 TATTAAGTTG
* * * * *
9575609 TTA TTA TTA TTG TTA TTA TTA TCA TCA TCA TCA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
9575657 CTATATATTC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:9575623 original size:12 final size:12
Alignment explanation
Indices: 9575606--9575630 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
9575596 TGTTATTAAG
9575606 TTGTTATTATTA
1 TTGTTATTATTA
9575618 TTGTTATTATTA
1 TTGTTATTATTA
9575630 T
1 T
9575631 CATCATCATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (12 bp):
TTGTTATTATTA
Found at i:9575624 original size:23 final size:22
Alignment explanation
Indices: 9575564--9575626 Score: 65
Period size: 23 Copynumber: 2.8 Consensus size: 22
9575554 TAGTTTTTTA
*
9575564 TTATTATTTATTTTTATTAAATT
1 TTATTA-TTATTGTTATTAAATT
* * *
9575587 TGATT-TTCTTGTTATTAAGTT
1 TTATTATTATTGTTATTAAATT
9575608 GTTATTATTATTGTTATTA
1 -TTATTATTATTGTTATTA
9575627 TTATCATCAT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
21 13 0.41
22 4 0.12
23 15 0.47
ACGTcount: A:0.25, C:0.02, G:0.08, T:0.65
Consensus pattern (22 bp):
TTATTATTATTGTTATTAAATT
Found at i:9575809 original size:17 final size:17
Alignment explanation
Indices: 9575778--9575821 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
9575768 CATAACTTTT
*
9575778 ATATACA-TATATATAC
1 ATATACATTTTATATAC
*
9575794 ATTTACATTTTATATAC
1 ATATACATTTTATATAC
9575811 ATATACATTTT
1 ATATACATTTT
9575822 TTATTTCCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 6 0.25
17 18 0.75
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (17 bp):
ATATACATTTTATATAC
Found at i:9576016 original size:30 final size:30
Alignment explanation
Indices: 9575980--9576036 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
9575970 TATTTGTTTA
9575980 TATATATATGTAAAT-ATCTTTTTTATAATC
1 TATATATATGTAAATAAT-TTTTTTATAATC
*
9576010 TATATATATGTATATAATTTTTTTATA
1 TATATATATGTAAATAATTTTTTTATA
9576037 TATGTACATG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.56
Consensus pattern (30 bp):
TATATATATGTAAATAATTTTTTTATAATC
Found at i:9577330 original size:16 final size:17
Alignment explanation
Indices: 9577296--9577332 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
9577286 TATAAAAATG
9577296 TATAAAACATCAGATTT
1 TATAAAACATCAGATTT
*
9577313 TATAAAATATCA-ATTT
1 TATAAAACATCAGATTT
9577329 TATA
1 TATA
9577333 TGTCTTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.41
Consensus pattern (17 bp):
TATAAAACATCAGATTT
Found at i:9579297 original size:18 final size:17
Alignment explanation
Indices: 9579257--9579299 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
9579247 AAAAATACTT
*
9579257 TATTTTATGATTTTTTA
1 TATTTTATAATTTTTTA
*
9579274 TAATTTTATAATTTTCTTG
1 T-ATTTTATAATTTT-TTA
9579293 TATTTTA
1 TATTTTA
9579300 GGAATTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 1 0.05
18 18 0.82
19 3 0.14
ACGTcount: A:0.26, C:0.02, G:0.05, T:0.67
Consensus pattern (17 bp):
TATTTTATAATTTTTTA
Found at i:9579644 original size:17 final size:17
Alignment explanation
Indices: 9579622--9579654 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
9579612 TTAATTACTA
9579622 AAATTTAAATTTATTTT
1 AAATTTAAATTTATTTT
*
9579639 AAATTTGAATTTATTT
1 AAATTTAAATTTATTT
9579655 AAAAATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (17 bp):
AAATTTAAATTTATTTT
Found at i:9579804 original size:7 final size:7
Alignment explanation
Indices: 9579792--9579826 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
9579782 TTTTGCATGC
9579792 AAAATAA
1 AAAATAA
9579799 AAAATAA
1 AAAATAA
9579806 AAAATAA
1 AAAATAA
9579813 AAAATAA
1 AAAATAA
9579820 AAAATAA
1 AAAATAA
9579827 TTTATTAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (7 bp):
AAAATAA
Found at i:9582153 original size:91 final size:91
Alignment explanation
Indices: 9582014--9582194 Score: 346
Period size: 91 Copynumber: 2.0 Consensus size: 91
9582004 TCGTGTTATC
9582014 TTCACCCTTTTAATATTATTAAAAAATATAAAAAAACAATTACTTATTATTTTCTTGAAATAATA
1 TTCACCCTTTTAATATTATTAAAAAATATAAAAAAACAATTACTTATTATTTTCTTGAAATAATA
9582079 TTTTTCATAAGAAAATTTGTTTTCAA
66 TTTTTCATAAGAAAATTTGTTTTCAA
9582105 TTCA-CCTTTTAATATTATTAAAAAATATAAAAAAAACAATTACTTATTATTTTCTTGAAATAAT
1 TTCACCCTTTTAATATTATTAAAAAATAT-AAAAAAACAATTACTTATTATTTTCTTGAAATAAT
9582169 ATTTTTCATAAGAAAATTTGTTTTCA
65 ATTTTTCATAAGAAAATTTGTTTTCA
9582195 TGAATTGAGA
Statistics
Matches: 89, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
90 24 0.27
91 65 0.73
ACGTcount: A:0.43, C:0.09, G:0.03, T:0.44
Consensus pattern (91 bp):
TTCACCCTTTTAATATTATTAAAAAATATAAAAAAACAATTACTTATTATTTTCTTGAAATAATA
TTTTTCATAAGAAAATTTGTTTTCAA
Found at i:9583917 original size:24 final size:22
Alignment explanation
Indices: 9583876--9583919 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
9583866 CATTAATCAA
*
9583876 ATTTCATATACATGTATCATAC
1 ATTTCATATACATATATCATAC
9583898 ATTTCATATATCAATATATCAT
1 ATTTCATATA-C-ATATATCAT
9583920 GTAACATCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 1 0.05
24 8 0.42
ACGTcount: A:0.39, C:0.16, G:0.02, T:0.43
Consensus pattern (22 bp):
ATTTCATATACATATATCATAC
Found at i:9584198 original size:25 final size:25
Alignment explanation
Indices: 9584130--9584202 Score: 78
Period size: 25 Copynumber: 2.9 Consensus size: 25
9584120 ACAAGTTGTA
9584130 AACGGTAAGCTC-CTCTGAGCTGAAT
1 AACGGTAAGCTCTCTC-GAGCTGAAT
* * *
9584155 AACAGTAAACTCAT-GCGAGCTGAAT
1 AACGGTAAGCTC-TCTCGAGCTGAAT
*
9584180 ATCGGTAAGCTCTCTCGAGCTGA
1 AACGGTAAGCTCTCTCGAGCTGA
9584203 GAATTGGTAA
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
24 1 0.03
25 36 0.95
26 1 0.03
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.23
Consensus pattern (25 bp):
AACGGTAAGCTCTCTCGAGCTGAAT
Found at i:9586850 original size:21 final size:22
Alignment explanation
Indices: 9586820--9586875 Score: 69
Period size: 24 Copynumber: 2.5 Consensus size: 22
9586810 ATAGAGCTAG
*
9586820 TGTCGTAACAC-GACAACCCTA
1 TGTCGCAACACAGACAACCCTA
*
9586841 TGTCGCAACACCAAGGCAACCCTA
1 TGTCGCAACA-C-AGACAACCCTA
9586865 TGTCGCAACAC
1 TGTCGCAACAC
9586876 CAAGGCCAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 9 0.30
22 1 0.03
23 1 0.03
24 19 0.63
ACGTcount: A:0.32, C:0.36, G:0.16, T:0.16
Consensus pattern (22 bp):
TGTCGCAACACAGACAACCCTA
Found at i:9586865 original size:24 final size:24
Alignment explanation
Indices: 9586833--9586881 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
9586823 CGTAACACGA
9586833 CAACCCTATGTCGCAACACCAAGG
1 CAACCCTATGTCGCAACACCAAGG
9586857 CAACCCTATGTCGCAACACCAAGG
1 CAACCCTATGTCGCAACACCAAGG
9586881 C
1 C
9586882 CAAAATTGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.39, G:0.16, T:0.12
Consensus pattern (24 bp):
CAACCCTATGTCGCAACACCAAGG
Found at i:9589845 original size:51 final size:51
Alignment explanation
Indices: 9589723--9589961 Score: 258
Period size: 51 Copynumber: 4.7 Consensus size: 51
9589713 AAAGTGATGG
*
9589723 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGAAATGTCG-
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG-AT-AAAT-TCGA
* * **
9589776 -CA--TGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAAATTCGA
* * * *
9589824 TCACTTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATATTAA-T-GG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATA--AATTCGA
* **
9589875 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGAACCGGA-AAATTTAA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAAATTCGA
* *
9589925 TCACGTGTGTAATACTATGTGAAGGCTACTACGTGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA
9589962 TCAAATGATA
Statistics
Matches: 157, Mismatches: 21, Indels: 19
0.80 0.11 0.10
Matches are distributed among these distances:
47 3 0.02
48 4 0.03
49 5 0.03
50 68 0.43
51 74 0.47
52 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (51 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAAATTCGA
Found at i:9589962 original size:101 final size:101
Alignment explanation
Indices: 9589723--9589998 Score: 315
Period size: 101 Copynumber: 2.7 Consensus size: 101
9589713 AAAGTGATGG
* * * *
9589723 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGAAATGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAGAATGAAATGTCACATGTGTAGTAC
* * ** *
9589788 TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
66 TATGTGCAGGCTACTACGCGAACCGGATAAATTCAA
* * * *
9589824 TCACTTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATAT-TAATGGTCACGTGTGTAGT
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAGA-ATGAAAT-GTCACATGTGTAGT
* *
9589888 ACTATGTGCAGGCTACTACGTGAACCGGA-AAATTTAA
64 ACTATGTGCAGGCTACTACGCGAACCGGATAAATTCAA
* * * * *
9589925 TCACGTGTGTAATACTATGTGAAGGCTACTACGTGTATCA-AATGATAATAGTTAAATGAGTGGT
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAGAATGA-AAT-GTCACATGTGTAGT
9589989 ACTATGTGCA
64 ACTATGTGCA
9589999 AACCACTGAA
Statistics
Matches: 147, Mismatches: 24, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
99 2 0.01
100 1 0.01
101 104 0.71
102 40 0.27
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAGAATGAAATGTCACATGTGTAGTAC
TATGTGCAGGCTACTACGCGAACCGGATAAATTCAA
Found at i:9592454 original size:47 final size:48
Alignment explanation
Indices: 9592379--9592469 Score: 123
Period size: 47 Copynumber: 1.9 Consensus size: 48
9592369 CTTTCGTTCA
* * *
9592379 GTGATATGTGGTTTCTGTATAAGACCATATCTGGGA-TATGGCATCGGT
1 GTGATATGTGGCTACTGTATAAGACCATAGCT-GGACTATGGCATCGGT
*
9592427 GTGATATGT-GCTACTGTGTAAGACCATAGCTGGACTATGGCAT
1 GTGATATGTGGCTACTGTATAAGACCATAGCTGGACTATGGCAT
9592470 AGAGAAAACG
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
46 3 0.08
47 26 0.68
48 9 0.24
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.33
Consensus pattern (48 bp):
GTGATATGTGGCTACTGTATAAGACCATAGCTGGACTATGGCATCGGT
Found at i:9595720 original size:51 final size:49
Alignment explanation
Indices: 9595655--9595832 Score: 191
Period size: 51 Copynumber: 3.5 Consensus size: 49
9595645 AAAGGTCGCA
* *
9595655 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGCTTCGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTA-GCGTAACAGATAG-TTTGATCACG
* * *
9595706 TGTGTAGTACTATGTGCAGGCTACTACGTGTATC-GAATA-TTAATGGTCACG
1 TGTGTAGTACTATGTGCAGGCTACTA-GCGTAACAG-ATAGTT--TGATCACG
* *
9595757 TGTGTAGTACTATGTGCGGGCTACTA-CGTGAACAGGAAAGTTTGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTAGCGT-AACA-GATAGTTTGATCACG
*
9595807 TGTGTAGTACTATGTGAAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
9595833 CGTGTATCGA
Statistics
Matches: 108, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
49 4 0.04
50 34 0.31
51 67 0.62
52 3 0.03
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTATGTGCAGGCTACTAGCGTAACAGATAGTTTGATCACG
Found at i:9595868 original size:101 final size:101
Alignment explanation
Indices: 9595600--9595875 Score: 346
Period size: 101 Copynumber: 2.7 Consensus size: 101
9595590 AAAGTGATGG
* * *
9595600 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGA-AA-GGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GAATGATAATGGTCACATGTGTAGT
* *
9595663 ACTATGTGCAGGCTACTATGCGTACCAGATAGCTTCGA
65 ACTATGTGCAGGCTACTA-GCGTAACAGAAAGCTTCGA
* *
9595701 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAAT-ATTAATGGTCACGTGTGTAGT
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGA-TAATGGTCACATGTGTAGT
* *
9595765 ACTATGTGCGGGCTACTA-CGTGAACAGGAAAG-TTTGA
65 ACTATGTGCAGGCTACTAGCGT-AACA-GAAAGCTTCGA
* * * * *
9595802 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATAGTTAAATGAGTGGTA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATGGTCACATGTGTAGTA
9595867 CTATGTGCA
66 CTATGTGCA
9595876 AACCACTGAA
Statistics
Matches: 153, Mismatches: 16, Indels: 12
0.85 0.09 0.07
Matches are distributed among these distances:
99 1 0.01
100 7 0.05
101 110 0.72
102 35 0.23
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATGGTCACATGTGTAGTA
CTATGTGCAGGCTACTAGCGTAACAGAAAGCTTCGA
Found at i:9601559 original size:23 final size:23
Alignment explanation
Indices: 9601533--9601656 Score: 94
Period size: 23 Copynumber: 5.4 Consensus size: 23
9601523 TTAGTCACAT
*
9601533 ATCTACTGGCAGTTCATTTGCAA
1 ATCTACTGGCAGTTCATCTGCAA
* *
9601556 ATCTATCGTTG--GTTTA-CTCGCAA
1 ATCTA-C-TGGCAGTTCATCT-GCAA
9601579 ATCTACTGGCAGTTCATCTGCAA
1 ATCTACTGGCAGTTCATCTGCAA
* * * *
9601602 ATCTATTGTC-GATTTATCCGCAA
1 ATCTACTGGCAG-TTCATCTGCAA
* * *
9601625 ATCTACTAGCAGTTCATATGTAA
1 ATCTACTGGCAGTTCATCTGCAA
9601648 ATCTACTGG
1 ATCTACTGG
9601657 TGGTTTGTCC
Statistics
Matches: 76, Mismatches: 17, Indels: 16
0.70 0.16 0.15
Matches are distributed among these distances:
21 2 0.03
22 3 0.04
23 65 0.86
24 4 0.05
25 2 0.03
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (23 bp):
ATCTACTGGCAGTTCATCTGCAA
Found at i:9601588 original size:46 final size:46
Alignment explanation
Indices: 9601533--9601652 Score: 161
Period size: 46 Copynumber: 2.6 Consensus size: 46
9601523 TTAGTCACAT
* * *
9601533 ATCTACTGGCAGTTCATTTGCAAATCTATCGTTGGTTTA-CTCGCAA
1 ATCTACTGGCAGTTCATATGCAAATCTATCGTCGATTTATC-CGCAA
* *
9601579 ATCTACTGGCAGTTCATCTGCAAATCTATTGTCGATTTATCCGCAA
1 ATCTACTGGCAGTTCATATGCAAATCTATCGTCGATTTATCCGCAA
* *
9601625 ATCTACTAGCAGTTCATATGTAAATCTA
1 ATCTACTGGCAGTTCATATGCAAATCTA
9601653 CTGGTGGTTT
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
46 65 0.98
47 1 0.02
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.36
Consensus pattern (46 bp):
ATCTACTGGCAGTTCATATGCAAATCTATCGTCGATTTATCCGCAA
Found at i:9601668 original size:46 final size:44
Alignment explanation
Indices: 9601533--9601679 Score: 141
Period size: 46 Copynumber: 3.2 Consensus size: 44
9601523 TTAGTCACAT
* * * *
9601533 ATCTACTGGCAGTTCATTTGCAAATCTATCGTTGGTTTACTCGCAA
1 ATCTACTAGCAGTTCATATGCAAATCTAT-GGTGGTTTTC-CGCAA
* * * *
9601579 ATCTACTGGCAGTTCATCTGCAAATCTATTGTCGATTTATCCGCAA
1 ATCTACTAGCAGTTCATATGCAAATCTATGGT-GGTTT-TCCGCAA
* *
9601625 ATCTACTAGCAGTTCATATGTAAATCTACTGGTGGTTTGTCCGCAT
1 ATCTACTAGCAGTTCATATGCAAATCTA-TGGTGGTTT-TCCGCAA
*
9601671 ATTTACTAG
1 ATCTACTAG
9601680 AGGTATATCC
Statistics
Matches: 85, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
45 1 0.01
46 80 0.94
47 4 0.05
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (44 bp):
ATCTACTAGCAGTTCATATGCAAATCTATGGTGGTTTTCCGCAA
Found at i:9604116 original size:6 final size:6
Alignment explanation
Indices: 9604105--9604147 Score: 86
Period size: 6 Copynumber: 7.2 Consensus size: 6
9604095 TATTTACAAC
9604105 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA T
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA T
9604148 TATTTATTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
TAAAAA
Found at i:9608798 original size:6 final size:6
Alignment explanation
Indices: 9608772--9608824 Score: 79
Period size: 6 Copynumber: 8.5 Consensus size: 6
9608762 AAAAATCATA
*
9608772 AAAAAT AAATAAT CTAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAA-AAT -AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
9608822 AAA
1 AAA
9608825 CCAAATTGAA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
6 35 0.81
7 6 0.14
8 2 0.05
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (6 bp):
AAAAAT
Found at i:9614737 original size:51 final size:51
Alignment explanation
Indices: 9614606--9614788 Score: 176
Period size: 51 Copynumber: 3.6 Consensus size: 51
9614596 AAAGTGATGG
* * * * * *
9614606 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACTGGA-A-TGATAGG
1 TCACATGTGTAGTACTATGTGCAGACTACTACGCGTACCGGATAGTAAT-GA
* * *
9614656 TCGCATGTGTAGTACTATGTGCAGACTACTATGCGTACCGGATAGT-TTCGA
1 TCACATGTGTAGTACTATGTGCAGACTACTACGCGTACCGGATAGTAAT-GA
* * * * * *
9614707 TCACGTGTGTAGTACTATGTGTAGGA-TACTACGTGTATCGGATGGTAATGG
1 TCACATGTGTAGTACTATGTGCA-GACTACTACGCGTACCGGATAGTAATGA
9614758 TCACATGTGTAGTACTATGTGCAGACTACTA
1 TCACATGTGTAGTACTATGTGCAGACTACTA
9614789 TGTGAACCGA
Statistics
Matches: 108, Mismatches: 20, Indels: 9
0.79 0.15 0.07
Matches are distributed among these distances:
50 38 0.35
51 66 0.61
52 4 0.04
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (51 bp):
TCACATGTGTAGTACTATGTGCAGACTACTACGCGTACCGGATAGTAATGA
Found at i:9614737 original size:101 final size:102
Alignment explanation
Indices: 9614606--9614790 Score: 295
Period size: 101 Copynumber: 1.8 Consensus size: 102
9614596 AAAGTGATGG
* *
9614606 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA-CTGGAATGAT-A-GGTCGCATGTGTAG
1 TCACGTGTGTAGTACTATGTGCAGGATACTACGTGTATC-GG-ATGATAATGGTCACATGTGTAG
9614668 TACTATGTGCAGACTACTATGCGTACCGGATAGTTTCGA
64 TACTATGTGCAGACTACTATGCGTACCGGATAGTTTCGA
* *
9614707 TCACGTGTGTAGTACTATGTGTAGGATACTACGTGTATCGGATGGTAATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGGATACTACGTGTATCGGATGATAATGGTCACATGTGTAGTA
9614772 CTATGTGCAGACTACTATG
66 CTATGTGCAGACTACTATG
9614791 TGAACCGAAC
Statistics
Matches: 77, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
100 4 0.05
101 38 0.49
102 35 0.45
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAGGATACTACGTGTATCGGATGATAATGGTCACATGTGTAGTA
CTATGTGCAGACTACTATGCGTACCGGATAGTTTCGA
Found at i:9614850 original size:45 final size:45
Alignment explanation
Indices: 9614794--9614886 Score: 159
Period size: 45 Copynumber: 2.1 Consensus size: 45
9614784 TACTATGTGA
* *
9614794 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
*
9614839 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
9614884 ACC
1 ACC
9614887 AAGTATCTGC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
Found at i:9615033 original size:8 final size:8
Alignment explanation
Indices: 9615020--9615044 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
9615010 ATTGTGATTG
9615020 AAAGTGAA
1 AAAGTGAA
9615028 AAAGTGAA
1 AAAGTGAA
9615036 AAAGTGAA
1 AAAGTGAA
9615044 A
1 A
9615045 TTATGAAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.12
Consensus pattern (8 bp):
AAAGTGAA
Found at i:9615162 original size:23 final size:22
Alignment explanation
Indices: 9615124--9615168 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
9615114 AAAAATGGTG
9615124 AATATTGAATTAGAAGCTGAAT
1 AATATTGAATTAGAAGCTGAAT
9615146 AATATATGAAATT-GAAGCTGAAT
1 AATAT-TG-AATTAGAAGCTGAAT
9615169 GAGTCTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 5 0.24
23 12 0.57
24 4 0.19
ACGTcount: A:0.47, C:0.04, G:0.18, T:0.31
Consensus pattern (22 bp):
AATATTGAATTAGAAGCTGAAT
Found at i:9616964 original size:23 final size:23
Alignment explanation
Indices: 9616938--9616988 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
9616928 TTAGTCGCAT
*
9616938 ATCTACTAATAGTTCATCTGCAA
1 ATCTACTAACAGTTCATCTGCAA
* ** *
9616961 ATCTATTGGCAGTTCATTTGCAA
1 ATCTACTAACAGTTCATCTGCAA
9616984 ATCTA
1 ATCTA
9616989 TTGGTGGTTC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (23 bp):
ATCTACTAACAGTTCATCTGCAA
Found at i:9616998 original size:23 final size:23
Alignment explanation
Indices: 9616948--9616992 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
9616938 ATCTACTAAT
9616948 AGTTCATCTGCAAATCTATTGGC
1 AGTTCATCTGCAAATCTATTGGC
*
9616971 AGTTCATTTGCAAATCTATTGG
1 AGTTCATCTGCAAATCTATTGG
9616993 TGGTTCGTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.38
Consensus pattern (23 bp):
AGTTCATCTGCAAATCTATTGGC
Found at i:9620612 original size:16 final size:16
Alignment explanation
Indices: 9620593--9620651 Score: 64
Period size: 16 Copynumber: 3.6 Consensus size: 16
9620583 GTTTTCATTA
*
9620593 TCTAGAGTTTTCACAG
1 TCTATAGTTTTCACAG
* *
9620609 TCTATAGTTGTCTCAG
1 TCTATAGTTTTCACAG
* *
9620625 CCTATAGTTTTTAACAG
1 TCTATAG-TTTTCACAG
9620642 TCTATAGTTT
1 TCTATAGTTT
9620652 CAAATCTAAA
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
16 22 0.65
17 12 0.35
ACGTcount: A:0.24, C:0.17, G:0.15, T:0.44
Consensus pattern (16 bp):
TCTATAGTTTTCACAG
Found at i:9625987 original size:20 final size:20
Alignment explanation
Indices: 9625930--9625987 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
9625920 TAAGTTTATG
*
9625930 CTAAGTAAATGGAATGGAAA
1 CTAAGTAAATGGAATGGTAA
*
9625950 GTAAGTAAATGGAATGGTAA
1 CTAAGTAAATGGAATGGTAA
9625970 CTAAGTAAATGGAATGGT
1 CTAAGTAAATGGAATGGT
9625988 TCTTAGTCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.45, C:0.03, G:0.28, T:0.24
Consensus pattern (20 bp):
CTAAGTAAATGGAATGGTAA
Found at i:9626722 original size:20 final size:19
Alignment explanation
Indices: 9626697--9626741 Score: 74
Period size: 20 Copynumber: 2.4 Consensus size: 19
9626687 ATCTGTAAGT
9626697 TAAGTTATATTGGCATGGTG
1 TAAGTTATATTGGCAT-GTG
9626717 TAAGTTATATTGGCATGTG
1 TAAGTTATATTGGCATGTG
9626736 T-AGTTA
1 TAAGTTA
9626742 AGTTGAATGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 5 0.20
19 4 0.16
20 16 0.64
ACGTcount: A:0.27, C:0.04, G:0.27, T:0.42
Consensus pattern (19 bp):
TAAGTTATATTGGCATGTG
Found at i:9628342 original size:3 final size:3
Alignment explanation
Indices: 9628334--9628383 Score: 73
Period size: 3 Copynumber: 16.7 Consensus size: 3
9628324 GACATCTGAT
* * *
9628334 TCA TCA TCA TCA TCG TCG TCG TCA TCA TCA TCA TCA TCA TCA TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
9628382 TC
1 TC
9628384 TATTGAAGCC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.26, C:0.34, G:0.06, T:0.34
Consensus pattern (3 bp):
TCA
Found at i:9639191 original size:26 final size:26
Alignment explanation
Indices: 9639161--9639222 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
9639151 TACCTACAGT
*
9639161 AGTTTCAGAATATCATAACATTTATC
1 AGTTTCAGAATATCATAACATGTATC
* **
9639187 AGTTTCAGATTATCATAGTATGTATC
1 AGTTTCAGAATATCATAACATGTATC
9639213 AGTTTCAGAA
1 AGTTTCAGAA
9639223 CACTTACAGG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (26 bp):
AGTTTCAGAATATCATAACATGTATC
Found at i:9648256 original size:60 final size:60
Alignment explanation
Indices: 9648157--9648276 Score: 152
Period size: 60 Copynumber: 2.0 Consensus size: 60
9648147 AGGGAATGAT
* * *
9648157 CCTAGCCTCAATGATAATCTAAATGGTTAAGATATTAATCCT-ACTGCTCGTAGGGTGGTA
1 CCTAGCCTCAATGATAATCTAAATGGTCAAGACACTAATCCTCA-TGCTCGTAGGGTGGTA
* * * * *
9648217 CCTAGTCTGAATGATAATCTAAATGGTCAGGACGCTAATCCTCATGTTCGTAGGGTGGTA
1 CCTAGCCTCAATGATAATCTAAATGGTCAAGACACTAATCCTCATGCTCGTAGGGTGGTA
9648277 GATGATCGAG
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
60 50 0.98
61 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (60 bp):
CCTAGCCTCAATGATAATCTAAATGGTCAAGACACTAATCCTCATGCTCGTAGGGTGGTA
Found at i:9662258 original size:16 final size:17
Alignment explanation
Indices: 9662232--9662269 Score: 53
Period size: 15 Copynumber: 2.3 Consensus size: 17
9662222 GTCTCATTCT
9662232 TTTTTCATTTCT-TCC-
1 TTTTTCATTTCTCTCCA
9662247 TTTTTCATTTTCTCTCCA
1 TTTTTCA-TTTCTCTCCA
9662265 TTTTT
1 TTTTT
9662270 GCAAACAGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 7 0.35
16 5 0.25
17 3 0.15
18 5 0.25
ACGTcount: A:0.08, C:0.24, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTTTCATTTCTCTCCA
Found at i:9672526 original size:24 final size:24
Alignment explanation
Indices: 9672482--9672527 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
9672472 CTTTACTTTA
*
9672482 TCTTTTATTCGATGTTTTTGTTGC
1 TCTTTTATTCCATGTTTTTGTTGC
*
9672506 TCTTTT-TTCCATTTTTGTTGTT
1 TCTTTTATTCCATGTTT-TTGTT
9672528 TTCCCTCTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.07, C:0.13, G:0.13, T:0.67
Consensus pattern (24 bp):
TCTTTTATTCCATGTTTTTGTTGC
Found at i:9677679 original size:38 final size:39
Alignment explanation
Indices: 9677612--9677724 Score: 106
Period size: 38 Copynumber: 2.9 Consensus size: 39
9677602 TTCATCCTTT
* * * *
9677612 TGAATACATGTTAAAGCATGTTTACTGCTAGTGTTGAAC
1 TGAATACACGTTAAAGCATGCTAACTGCTAGTGATGAAC
*
9677651 TGAATACACGTT-AAGCATGCTAATTGCTAGTGATGAA-
1 TGAATACACGTTAAAGCATGCTAACTGCTAGTGATGAAC
* * * * *
9677688 TCAAATACATGTT-AATCATGTTTACTGCTAGTGATGA
1 T-GAATACACGTTAAAGCATGCTAACTGCTAGTGATGA
9677725 TTCGTTCTAT
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
37 1 0.02
38 50 0.81
39 11 0.18
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.35
Consensus pattern (39 bp):
TGAATACACGTTAAAGCATGCTAACTGCTAGTGATGAAC
Found at i:9677891 original size:21 final size:21
Alignment explanation
Indices: 9677867--9677918 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
9677857 ATATGTTGTG
*
9677867 TATCCACAATAAGTGGTAGTT
1 TATCCACAATAAGTAGTAGTT
* * *
9677888 TATCTACAAATCAGTAGTGGTT
1 TATCCAC-AATAAGTAGTAGTT
9677910 TATCCACAA
1 TATCCACAA
9677919 CCCAAAGTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
21 8 0.32
22 17 0.68
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (21 bp):
TATCCACAATAAGTAGTAGTT
Found at i:9679332 original size:36 final size:36
Alignment explanation
Indices: 9679281--9679352 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
9679271 TCAAGCTTTG
* *
9679281 ATTCTAGTATGTTCATGTCCTTATAGGTGGTTACCT
1 ATTCTAGTATATTCATGTCCTCATAGGTGGTTACCT
*
9679317 ATTCTAGTATATTCATGTCCTCATCGGTGGTTACCT
1 ATTCTAGTATATTCATGTCCTCATAGGTGGTTACCT
9679353 TCTTACAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.19, C:0.19, G:0.18, T:0.43
Consensus pattern (36 bp):
ATTCTAGTATATTCATGTCCTCATAGGTGGTTACCT
Found at i:9679432 original size:3 final size:3
Alignment explanation
Indices: 9679424--9679478 Score: 103
Period size: 3 Copynumber: 18.7 Consensus size: 3
9679414 AAATGGGTCT
9679424 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC -TC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
9679471 TTC TTC TT
1 TTC TTC TT
9679479 TGTTGAGTAT
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 49 0.96
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:9681357 original size:26 final size:26
Alignment explanation
Indices: 9681328--9681380 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
9681318 ATTAAATTAA
* *
9681328 AATTATCATAAATATAATTATTATTT
1 AATTATCATAAAGATAAATATTATTT
9681354 AATTATCATAAAGATAAATATTATTT
1 AATTATCATAAAGATAAATATTATTT
9681380 A
1 A
9681381 TGTTAATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (26 bp):
AATTATCATAAAGATAAATATTATTT
Found at i:9683244 original size:9 final size:9
Alignment explanation
Indices: 9683230--9683260 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
9683220 GTTAAACGAA
9683230 TCGAGTTAT
1 TCGAGTTAT
*
9683239 TCGAGTTAA
1 TCGAGTTAT
9683248 TCGAGTTAT
1 TCGAGTTAT
9683257 TCGA
1 TCGA
9683261 ATCAAATCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:9683331 original size:9 final size:9
Alignment explanation
Indices: 9683314--9683350 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
9683304 TAAGTTTTCG
9683314 AATTCGAAT
1 AATTCGAAT
*
9683323 AACTCGAAT
1 AATTCGAAT
9683332 AATTCGAAT
1 AATTCGAAT
9683341 AATTCGAAT
1 AATTCGAAT
9683350 A
1 A
9683351 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:9683598 original size:30 final size:31
Alignment explanation
Indices: 9683564--9683623 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
9683554 AAACCTTTTA
*
9683564 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
* *
9683594 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
9683624 TCTCACCTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:9684386 original size:5 final size:5
Alignment explanation
Indices: 9684376--9684406 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
9684366 CTCAAAAATT
9684376 TTCGA TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA TTCGA T
9684407 CGAATGCTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:9685153 original size:126 final size:125
Alignment explanation
Indices: 9684920--9685266 Score: 491
Period size: 126 Copynumber: 2.8 Consensus size: 125
9684910 CGAGTTGATG
** * ** *
9684920 TTTCTGATAAAATAGTATAAAATTACTTCTAGCAGGATGCTATTTGAGAAAAATTTGTGAAATCG
1 TTTCTGAGCAAATAGTATAATATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCG
*
9684985 CGGCCTCGTGGACGTGCTTTTGCTACAGTAGGGCACGGAAGAAACAATTATTTT-TTTGACA
66 CGGCCTCGTGGACGCGCTTTTGCTACAGTAGGGCACGGAAGAAA-AATT-TTTTGTTTGACA
*
9685046 TTTCTGAGCAAATAGTATAATATCGCTTCTAGCAGGATGATATTTGAGAAGAATTTGTGAAATCG
1 TTTCTGAGCAAATAGTATAATATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCG
* * * * * * *
9685111 CGGACTCGTGGACGCGCTTTTGCTACAGTAGGTCATGTAAGAAATATTTTTTGTTTTACT
66 CGGCCTCGTGGACGCGCTTTTGCTACAGTAGGGCACGGAAGAAAAATTTTTTGTTTGACA
*
9685171 TTTCTGAGCAAATAGTAT-ATAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATT
1 TTTCTGAGCAAATAGTATAAT-ATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATC
* *
9685235 GTGGCCTCCTGGACGCGCTTTTGCTACAGTAG
65 GCGGCCTCGTGGACGCGCTTTTGCTACAGTAG
9685267 CATGTTTGGG
Statistics
Matches: 199, Mismatches: 20, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
124 6 0.03
125 96 0.48
126 97 0.49
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (125 bp):
TTTCTGAGCAAATAGTATAATATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCG
CGGCCTCGTGGACGCGCTTTTGCTACAGTAGGGCACGGAAGAAAAATTTTTTGTTTGACA
Found at i:9685223 original size:125 final size:125
Alignment explanation
Indices: 9684920--9685266 Score: 491
Period size: 125 Copynumber: 2.8 Consensus size: 125
9684910 CGAGTTGATG
** ** *
9684920 TTTCTGATAAAATAGTATAAAATTACTTCTAGCAGGATGCTATTTGAGAAAAATTTGTGAAATCG
1 TTTCTGAGCAAATAGTAT-AAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCG
*
9684985 CGGCCTCGTGGACGTGCTTTTGCTACAGTAGGGCACGGAAGAAACAATTATTTTTTTGACA
65 CGGCCTCGTGGACGCGCTTTTGCTACAGTAGGGCACGGAAGAAACAATTATTTTTTTGACA
*
9685046 TTTCTGAGCAAATAGTATAATATCGCTTCTAGCAGGATGATATTTGAGAAGAATTTGTGAAATCG
1 TTTCTGAGCAAATAGTATAA-ATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCG
* * * * * * *
9685111 CGGACTCGTGGACGCGCTTTTGCTACAGTAGGTCATGTAAGAAA-TATT-TTTTGTTTTACT
65 CGGCCTCGTGGACGCGCTTTTGCTACAGTAGGGCACGGAAGAAACAATTATTTT-TTTGACA
*
9685171 TTTCTGAGCAAATAGTATATAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATTG
1 TTTCTGAGCAAATAGTATA-AATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCG
* *
9685236 TGGCCTCCTGGACGCGCTTTTGCTACAGTAG
65 CGGCCTCGTGGACGCGCTTTTGCTACAGTAG
9685267 CATGTTTGGG
Statistics
Matches: 199, Mismatches: 19, Indels: 7
0.88 0.08 0.03
Matches are distributed among these distances:
124 4 0.02
125 99 0.50
126 96 0.48
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (125 bp):
TTTCTGAGCAAATAGTATAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGC
GGCCTCGTGGACGCGCTTTTGCTACAGTAGGGCACGGAAGAAACAATTATTTTTTTGACA
Found at i:9687284 original size:29 final size:29
Alignment explanation
Indices: 9687242--9688148 Score: 1109
Period size: 29 Copynumber: 30.1 Consensus size: 29
9687232 AATATCCATC
* *
9687242 TAATTAAATTAGGTTAAGGTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
9687271 TAATCAAATTAGGTTA-GGTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
* * *
9687299 TAATTAAATTACGTTTAATTAAATTAGGTTAGGGTTAGGGTTTT
1 TAATCAAATTA-G----GTT--A--GGGTTAGGGTT------TT
9687343 TAATCAAATTAGGTTA-GGTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
*
9687371 TAATTAAATTAGGTTAGGGTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
9687400 TAATCAAATTAGGTTA-GGTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
*
9687428 TAATTAAATTAGGTTAGGGTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
9687457 TAATCAAATTAGGTTAGGGTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
9687486 TAATCAAATTAGGTTA-GGTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
* *
9687514 TAATTAAATTAGGTTTAATCAAATTAGGTTAGGGTTAGGGTTTT
1 TAATCAAATTAGG--T--T---A--GGGTTA--G----GGTTTT
*
9687558 TAATCAAATTAGGTTAGGGTTAGGATTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
9687587 TAATCAAATTAGGTTA-GGTTAGGG-TTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
* *
9687614 TAATTAAATTAGGTTAGGGTTACGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
*
9687643 TAATCAAATTAGGTTAGGGTTAAGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
* *
9687672 TAACCTAATTAGGTTA-GGTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
*
9687700 TAATTAAATTAGGTTAGGGTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
9687729 TAATCAAATTAGGTTA-GGTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
*
9687757 TAATTAAATTAGGTTAGGGTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
9687786 TAATCAAATTAGGTTAGGGTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
9687815 TAATCAAATTAGGTTA-GGTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
* *
9687843 TAATTAAATTAGGTTTAATCAAATTAGGTTAGGGTTAGGGTTTT
1 TAATCAAATTAGG--T--T---A--GGGTTA--G----GGTTTT
9687887 TAATCAAATTAGGTTAGGGTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
9687916 TAATCAAATTAGGTTA-GGTTAGGG-TTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
*
9687943 TAATTAAATTAGGTTAGGGTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
*
9687972 TAATTAAATTAGGTTAGGGTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
*
9688001 TAATCAAATTAGGTTAGGGTTAAGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
*
9688030 TAACCAAATTAGGTTAGGGTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
9688059 TAATCAAATTAGGTTAGGGTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
9688088 TAATCAAATTAGGTTA-GGTTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
*
9688116 TAATCAAATTAGGTTAGGGGTAGGGTTTT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTT
9688145 TAAT
1 TAAT
9688149 TACATCAAAT
Statistics
Matches: 784, Mismatches: 37, Indels: 114
0.84 0.04 0.12
Matches are distributed among these distances:
27 36 0.05
28 223 0.28
29 414 0.53
30 2 0.00
32 2 0.00
33 4 0.01
34 10 0.01
35 13 0.02
37 3 0.00
38 20 0.03
39 2 0.00
40 4 0.01
42 2 0.00
43 1 0.00
44 48 0.06
ACGTcount: A:0.29, C:0.03, G:0.25, T:0.43
Consensus pattern (29 bp):
TAATCAAATTAGGTTAGGGTTAGGGTTTT
Found at i:9687317 original size:43 final size:44
Alignment explanation
Indices: 9687269--9687353 Score: 145
Period size: 44 Copynumber: 2.0 Consensus size: 44
9687259 GGTTAGGGTT
*
9687269 TTTAATCAAATTAGGTTA-GGTTAGGGTTTTTAATTAAATTACG
1 TTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTACG
*
9687312 TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTA
1 TTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTA
9687354 GGTTAGGTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
43 17 0.44
44 22 0.56
ACGTcount: A:0.33, C:0.04, G:0.19, T:0.45
Consensus pattern (44 bp):
TTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTACG
Found at i:9687359 original size:72 final size:72
Alignment explanation
Indices: 9687242--9687381 Score: 271
Period size: 72 Copynumber: 1.9 Consensus size: 72
9687232 AATATCCATC
9687242 TAATTAAATTAGGTTAAGGTTAGGGTTTTTAATCAAATTAGGTTAGGTTAGGGTTTTTAATTAAA
1 TAATTAAATTAGGTTAAGGTTAGGGTTTTTAATCAAATTAGGTTAGGTTAGGGTTTTTAATTAAA
9687307 TTACGTT
66 TTACGTT
*
9687314 TAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGTTAGGGTTTTTAATTAAA
1 TAATTAAATTAGGTTAAGGTTAGGGTTTTTAATCAAATTAGGTTAGGTTAGGGTTTTTAATTAAA
9687379 TTA
66 TTA
9687382 GGTTAGGGTT
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.32, C:0.02, G:0.21, T:0.44
Consensus pattern (72 bp):
TAATTAAATTAGGTTAAGGTTAGGGTTTTTAATCAAATTAGGTTAGGTTAGGGTTTTTAATTAAA
TTACGTT
Found at i:9687376 original size:57 final size:58
Alignment explanation
Indices: 9687312--9688150 Score: 1153
Period size: 57 Copynumber: 14.1 Consensus size: 58
9687302 TTAAATTACG
9687312 TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTA-GGTTAGGGTT
1 TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTT
9687369 TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTA-GGTTAGGGTT
1 TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTT
9687426 TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTT
1 TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTT
* *
9687484 TTTAATCAAATTAGGTTA-GGTTAGGGTTTTTAATTAAATTAGGTTTAATCAAATTAGGTTAGGG
1 TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGG----------TT-----AGGG
9687548 TTAGGGTT
51 TTAGGGTT
* *
9687556 TTTAATCAAATTAGGTTAGGGTTAGGATTTTTAATCAAATTAGGTTA-GGTTAGGG-T
1 TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTT
* *
9687612 TTTAATTAAATTAGGTTAGGGTTACGGTTTTTAATCAAATTAGGTTAGGGTTAAGGTT
1 TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTT
* *
9687670 TTTAACCT-AATTAGGTTA-GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTT
1 TTTAA-TTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTT
* *
9687727 TTTAATCAAATTAGGTTA-GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTT
1 TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTT
*
9687784 TTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTA-GGTTAGGGTT
1 TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTT
9687841 TTTAATTAAATTAGGTTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGG
1 TTTAATTAAATTAGG----------TT-----AGGGTTAGGGTTTTTAATCAAATTAGGTTAGGG
9687906 TTAGGGTT
51 TTAGGGTT
* *
9687914 TTTAATCAAATTAGGTTA-GGTTAGGG-TTTTAATTAAATTAGGTTAGGGTTAGGGTT
1 TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTT
*
9687970 TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAAGGTT
1 TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTT
**
9688028 TTTAACCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTT
1 TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTT
* *
9688086 TTTAATCAAATTAGGTTA-GGTTAGGGTTTTTAATCAAATTAGGTTAGGGGTAGGGTT
1 TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTT
9688143 TTTAATTA
1 TTTAATTA
9688151 CATCAAATAA
Statistics
Matches: 715, Mismatches: 27, Indels: 80
0.87 0.03 0.10
Matches are distributed among these distances:
56 91 0.13
57 336 0.47
58 172 0.24
59 1 0.00
63 4 0.01
67 4 0.01
72 60 0.08
73 47 0.07
ACGTcount: A:0.29, C:0.03, G:0.26, T:0.43
Consensus pattern (58 bp):
TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTT
Found at i:9687531 original size:43 final size:44
Alignment explanation
Indices: 9687484--9687572 Score: 162
Period size: 44 Copynumber: 2.0 Consensus size: 44
9687474 GGTTAGGGTT
*
9687484 TTTAATCAAATTAGGTTA-GGTTAGGGTTTTTAATTAAATTAGG
1 TTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGG
9687527 TTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGG
1 TTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGG
9687571 TT
1 TT
9687573 AGGGTTAGGA
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
43 18 0.41
44 26 0.59
ACGTcount: A:0.31, C:0.03, G:0.21, T:0.44
Consensus pattern (44 bp):
TTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGG
Found at i:9687532 original size:15 final size:15
Alignment explanation
Indices: 9687512--9687543 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
9687502 GGTTAGGGTT
*
9687512 TTTAATTAAATTAGG
1 TTTAATCAAATTAGG
9687527 TTTAATCAAATTAGG
1 TTTAATCAAATTAGG
9687542 TT
1 TT
9687544 AGGGTTAGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47
Consensus pattern (15 bp):
TTTAATCAAATTAGG
Found at i:9687832 original size:329 final size:329
Alignment explanation
Indices: 9687242--9688148 Score: 1572
Period size: 329 Copynumber: 2.8 Consensus size: 329
9687232 AATATCCATC
* *
9687242 TAATTAAATTAGGTTAAGGTTAGGGTTTTTAATCAAATTAGGTTAGGTTAGGG-TTT--TT-AAT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGTTAGGGTTTTAATTAAAT
*
9687303 TA----A--ATTAC-G--TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTA
66 TAGGTTAGGGTTACGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTA
9687359 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGTTAGGG
131 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGTTAGGG
9687424 TTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAA
196 TTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAA
9687489 TCAAATTAGGTTAGGTTAGGGTTTTTAATTAAATTAGGTTTAATCAAATTAGGTTAGGGTTAGGG
261 TCAAATTAGGTTAGGTTAGGGTTTTTAATTAAATTAGGTTTAATCAAATTAGGTTAGGGTTAGGG
9687554 TTTT
326 TTTT
*
9687558 TAATCAAATTAGGTTAGGGTTAGGATTTTTAATCAAATTAGGTTAGGTTAGGGTTTTAATTAAAT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGTTAGGGTTTTAATTAAAT
* * * *
9687623 TAGGTTAGGGTTACGGTTTTTAATCAAATTAGGTTAGGGTTAAGGTTTTTAACCTAATTAGGTTA
66 TAGGTTAGGGTTACGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTA
9687688 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGTTAGGG
131 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGTTAGGG
9687753 TTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAA
196 TTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAA
9687818 TCAAATTAGGTTAGGTTAGGGTTTTTAATTAAATTAGGTTTAATCAAATTAGGTTAGGGTTAGGG
261 TCAAATTAGGTTAGGTTAGGGTTTTTAATTAAATTAGGTTTAATCAAATTAGGTTAGGGTTAGGG
9687883 TTTT
326 TTTT
9687887 TAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGTTAGGGTTTTAATTAAAT
1 TAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGTTAGGGTTTTAATTAAAT
*
9687952 TAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTA
66 TAGGTTAGGGTTACGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTA
* **
9688017 GGGTTAAGGTTTTTAACCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAG
131 -GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTA-GGTTAG
* *
9688082 GGTTTTTAATCAAATTAGGTTA-GGTTAGGGTTTTTAATCAAATTAGGTTAGGGGTAGGGTTTTT
194 GGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTTTTT
9688146 AAT
259 AAT
9688149 TACATCAAAT
Statistics
Matches: 557, Mismatches: 19, Indels: 16
0.94 0.03 0.03
Matches are distributed among these distances:
316 50 0.09
317 3 0.01
319 2 0.00
320 5 0.01
324 1 0.00
326 4 0.01
327 1 0.00
329 366 0.66
330 98 0.18
331 27 0.05
ACGTcount: A:0.29, C:0.03, G:0.25, T:0.43
Consensus pattern (329 bp):
TAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGTTAGGGTTTTAATTAAAT
TAGGTTAGGGTTACGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTA
GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGTTAGGG
TTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAA
TCAAATTAGGTTAGGTTAGGGTTTTTAATTAAATTAGGTTTAATCAAATTAGGTTAGGGTTAGGG
TTTT
Found at i:9687860 original size:43 final size:44
Alignment explanation
Indices: 9687813--9687901 Score: 162
Period size: 44 Copynumber: 2.0 Consensus size: 44
9687803 GGTTAGGGTT
*
9687813 TTTAATCAAATTAGGTTA-GGTTAGGGTTTTTAATTAAATTAGG
1 TTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGG
9687856 TTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGG
1 TTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGG
9687900 TT
1 TT
9687902 AGGGTTAGGG
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
43 18 0.41
44 26 0.59
ACGTcount: A:0.31, C:0.03, G:0.21, T:0.44
Consensus pattern (44 bp):
TTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATCAAATTAGG
Found at i:9687861 original size:15 final size:15
Alignment explanation
Indices: 9687841--9687872 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
9687831 GGTTAGGGTT
*
9687841 TTTAATTAAATTAGG
1 TTTAATCAAATTAGG
9687856 TTTAATCAAATTAGG
1 TTTAATCAAATTAGG
9687871 TT
1 TT
9687873 AGGGTTAGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47
Consensus pattern (15 bp):
TTTAATCAAATTAGG
Found at i:9688217 original size:25 final size:25
Alignment explanation
Indices: 9688183--9688230 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
9688173 TCGAAAAAAT
9688183 TTCTATTTTATTACATCAAATAAAC
1 TTCTATTTTATTACATCAAATAAAC
*
9688208 TTCTATTTTATTACATCGAATAA
1 TTCTATTTTATTACATCAAATAA
9688231 TATCAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.38, C:0.15, G:0.02, T:0.46
Consensus pattern (25 bp):
TTCTATTTTATTACATCAAATAAAC
Found at i:9688729 original size:18 final size:18
Alignment explanation
Indices: 9688706--9688740 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
9688696 CAGAAAAGGA
*
9688706 TACATATAAGGGTTAGGG
1 TACATATAAGGGCTAGGG
9688724 TACATATAAGGGCTAGG
1 TACATATAAGGGCTAGG
9688741 AAATACACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (18 bp):
TACATATAAGGGCTAGGG
Found at i:9690631 original size:12 final size:11
Alignment explanation
Indices: 9690597--9690631 Score: 54
Period size: 10 Copynumber: 3.2 Consensus size: 11
9690587 GAATTTTGGA
9690597 AGGAAATTGAG
1 AGGAAATTGAG
9690608 AGG-AATTGAG
1 AGGAAATTGAG
9690618 AGGAAATATGAG
1 AGGAAAT-TGAG
9690630 AG
1 AG
9690632 AGGATTTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 10 0.45
11 6 0.27
12 6 0.27
ACGTcount: A:0.46, C:0.00, G:0.37, T:0.17
Consensus pattern (11 bp):
AGGAAATTGAG
Found at i:9691385 original size:17 final size:18
Alignment explanation
Indices: 9691365--9691401 Score: 67
Period size: 17 Copynumber: 2.1 Consensus size: 18
9691355 TTTATTTTAA
9691365 TTAATATTATTATAT-TT
1 TTAATATTATTATATATT
9691382 TTAATATTATTATATATT
1 TTAATATTATTATATATT
9691400 TT
1 TT
9691402 TAAATTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TTAATATTATTATATATT
Found at i:9691393 original size:26 final size:26
Alignment explanation
Indices: 9691341--9691410 Score: 79
Period size: 26 Copynumber: 2.7 Consensus size: 26
9691331 ATGGGAAGAA
* *
9691341 AATATTATTATGTTTTTATTTTAATT
1 AATATTATTATATTTTTATATTAATT
9691367 AATATTATTATATTTTTAATATT-ATT
1 AATATTATTATATTTTT-ATATTAATT
* *
9691393 ATATATTTTTAAATTTTT
1 A-ATATTATTATATTTTT
9691411 TATGTTTATA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 20 0.53
27 18 0.47
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.64
Consensus pattern (26 bp):
AATATTATTATATTTTTATATTAATT
Found at i:9691413 original size:19 final size:19
Alignment explanation
Indices: 9691365--9691404 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
9691355 TTTATTTTAA
9691365 TTAATATTA-T-TATATTT
1 TTAATATTATTATATATTT
9691382 TTAATATTATTATATATTT
1 TTAATATTATTATATATTT
9691401 TTAA
1 TTAA
9691405 ATTTTTTATG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 9 0.43
18 1 0.05
19 11 0.52
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTAATATTATTATATATTT
Found at i:9693335 original size:30 final size:30
Alignment explanation
Indices: 9693262--9693336 Score: 96
Period size: 30 Copynumber: 2.5 Consensus size: 30
9693252 GAACAACATG
* **
9693262 AAGATGAAGATAACGCTAGAGGTGAAGATG
1 AAGATGAAGATAATGCTAGAGGTGAAGACA
* * *
9693292 GAGATGAAGATAATGTTGGAGGTGAAGACA
1 AAGATGAAGATAATGCTAGAGGTGAAGACA
9693322 AAGATGAAGATAATG
1 AAGATGAAGATAATG
9693337 ATAATGATGA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.44, C:0.04, G:0.33, T:0.19
Consensus pattern (30 bp):
AAGATGAAGATAATGCTAGAGGTGAAGACA
Found at i:9694555 original size:13 final size:13
Alignment explanation
Indices: 9694537--9694561 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9694527 ATTTTTAATA
9694537 TTATTTTGTGTGT
1 TTATTTTGTGTGT
9694550 TTATTTTGTGTG
1 TTATTTTGTGTG
9694562 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:9695966 original size:16 final size:16
Alignment explanation
Indices: 9695934--9695967 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9695924 TGAGTTCAAT
**
9695934 TATATATATATGTGTA
1 TATATATATATAAGTA
9695950 TATATATATATAAGTA
1 TATATATATATAAGTA
9695966 TA
1 TA
9695968 GATTTTCGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.09, T:0.47
Consensus pattern (16 bp):
TATATATATATAAGTA
Found at i:9696348 original size:41 final size:40
Alignment explanation
Indices: 9696318--9696420 Score: 113
Period size: 41 Copynumber: 2.5 Consensus size: 40
9696308 GGTTATGTAC
*
9696318 CTAGCAGGTTTAATGCCGGTGAAGTAATTCAGACTTTACG
1 CTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTTTACG
* *
9696358 TCTAGCAGGCTTAATGCCGGTG-A-TACATTTCAGACTATATG
1 -CTAGCAGGCTTAATGCCGGTGAAGTA-A-TTCAGACTTTACG
9696399 TCTAGCAGGC-TAAGTGCCGGTG
1 -CTAGCAGGCTTAA-TGCCGGTG
9696421 TACTGAATCA
Statistics
Matches: 56, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
39 2 0.04
40 5 0.09
41 49 0.88
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (40 bp):
CTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTTTACG
Found at i:9697171 original size:17 final size:17
Alignment explanation
Indices: 9697138--9697172 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
9697128 GATTAAAAGG
9697138 TTATAATATTTATATAT
1 TTATAATATTTATATAT
9697155 TTATATATATTTA-ATAT
1 TTATA-ATATTTATATAT
9697172 T
1 T
9697173 GCGGTAGACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTATAATATTTATATAT
Found at i:9700988 original size:289 final size:290
Alignment explanation
Indices: 9700451--9701011 Score: 867
Period size: 289 Copynumber: 1.9 Consensus size: 290
9700441 GTAAAATATC
* * * *
9700451 ATTTTGGATTGTGGTTTGGGGTTTTTGGATTTGGGTTTTATGCATGTATTATTGAAACACATTGA
1 ATTTTGGACTGTGGTATGGGGTTTTTGGATTTGGGTTTTATGCATGCATTATTCAAACACATTGA
* *
9700516 TTATATATTTTAACCAGAAAATGCATGTTACTCGACCTAATTAAAATCTGACATGAATAGTATTT
66 TTATATATGTTAACCAGAAAATGCATGTTACACGACCTAATTAAAATCTGACATGAATAGTATTT
* * * * * **
9700581 TTCTCTTACTTTGAAAGATAACGAAATTTTGTAAAACTAAGTGACAAACAACGGGTTTCTAAAAA
131 TTCACTTACTTTGAAAGAAAACAAAATTTTGCAAAACAAAGCAACAAACAACGGGTTTCTAAAAA
* *
9700646 CCTCACTATCAATAATAAAAATGAGGCTTAAGAATAGATGGCTCAATAAATGAATATTTTTCAAA
196 CATCACTATCAATAATAAAAATGAGACTTAAGAATAGATGGCTCAATAAATGAATATTTTTCAAA
9700711 CTAACTCAAGTGCAACTGTAGTTTTCCAAA
261 CTAACTCAAGTGCAACTGTAGTTTTCCAAA
* ***
9700741 ATTTTGGACTGTGGTAT-GGGTTTTTGGATTTGGGTTTTATGCATGCATTATTCTAACTTTTTGA
1 ATTTTGGACTGTGGTATGGGGTTTTTGGATTTGGGTTTTATGCATGCATTATTCAAACACATTGA
*
9700805 TTATATATGTTAATC-GAAAAATGCATGTTACACGACCTAATTAAAATCTGACATGAATAGTATT
66 TTATATATGTTAACCAG-AAAATGCATGTTACACGACCTAATTAAAATCTGACATGAATAGTATT
* *
9700869 TTTGCAC-TATTTTGAAAGAAAACAAAATTTTGCAAAACAAAGCAACAAACAACGGGTTTCTATA
130 TTT-CACTTACTTTGAAAGAAAACAAAATTTTGCAAAACAAAGCAACAAACAACGGGTTTCTAAA
* *
9700933 AACATCACTATCAATAATAAAAATGAGACTTCAGAATAGATGGTTCAATAAATGAATATTTTTCA
194 AACATCACTATCAATAATAAAAATGAGACTTAAGAATAGATGGCTCAATAAATGAATATTTTTCA
9700998 AACTAACTCAAGTG
259 AACTAACTCAAGTG
9701012 TGACCACAGT
Statistics
Matches: 245, Mismatches: 24, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
288 1 0.00
289 227 0.93
290 17 0.07
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.35
Consensus pattern (290 bp):
ATTTTGGACTGTGGTATGGGGTTTTTGGATTTGGGTTTTATGCATGCATTATTCAAACACATTGA
TTATATATGTTAACCAGAAAATGCATGTTACACGACCTAATTAAAATCTGACATGAATAGTATTT
TTCACTTACTTTGAAAGAAAACAAAATTTTGCAAAACAAAGCAACAAACAACGGGTTTCTAAAAA
CATCACTATCAATAATAAAAATGAGACTTAAGAATAGATGGCTCAATAAATGAATATTTTTCAAA
CTAACTCAAGTGCAACTGTAGTTTTCCAAA
Found at i:9705140 original size:12 final size:13
Alignment explanation
Indices: 9705123--9705155 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
9705113 GATAGGTCGC
9705123 ATGTGTAG-TACT
1 ATGTGTAGCTACT
9705135 ATGTGTAGCCTACT
1 ATGTGTAG-CTACT
9705149 ATGTGTA
1 ATGTGTA
9705156 CCGGATAGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 8 0.42
14 11 0.58
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.39
Consensus pattern (13 bp):
ATGTGTAGCTACT
Found at i:9705190 original size:51 final size:49
Alignment explanation
Indices: 9705068--9705261 Score: 160
Period size: 51 Copynumber: 3.8 Consensus size: 49
9705058 GAAAGTGATG
* * * *
9705068 GTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA-A-TGATAG
1 GTCACATGTGTAGTACTATGTG-AAGCTACTATGTGTACCGGATAGT-AT-C
* *
9705118 GTCGCATGTGTAGTACTATGTGTAGCCTACTATGTGTACCGGATAGCT-TC
1 GTCACATGTGTAGTACTATGTGAAG-CTACTATGTGTACCGGATAG-TATC
** ** * *
9705168 GATCATGTGTGTAGTACTATGTGCAAGCTACTACATGTATCGGATAGTGATT
1 G-TCACATGTGTAGTACTATGTG-AAGCTACTATGTGTACCGGATAGT-ATC
* *
9705220 GTCACATGTGTAGTACTATGTGCAGGCTACTATGTGAACCGG
1 GTCACATGTGTAGTACTATGTG-AAGCTACTATGTGTACCGG
9705262 TATCATTAAT
Statistics
Matches: 115, Mismatches: 21, Indels: 15
0.76 0.14 0.10
Matches are distributed among these distances:
49 1 0.01
50 38 0.33
51 71 0.62
52 4 0.03
53 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (49 bp):
GTCACATGTGTAGTACTATGTGAAGCTACTATGTGTACCGGATAGTATC
Found at i:9705254 original size:102 final size:101
Alignment explanation
Indices: 9705073--9705261 Score: 281
Period size: 102 Copynumber: 1.9 Consensus size: 101
9705063 TGATGGTCAC
* * *
9705073 GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTACTATG
1 GTGTGTAGTACTATGTGCAAGCTACTACATGTACCGGAATGATAGGTCACATGTGTAGTACTATG
* *
9705138 TGTAGCCTACTATGTGTACCGGATAGCTTCGATCAT
66 TGCAGCCTACTATGTGAACCGGATAGCTTCGATCAT
* *
9705174 GTGTGTAGTACTATGTGCAAGCTACTACATGTATCGGATAGTGAT-TGTCACATGTGTAGTACTA
1 GTGTGTAGTACTATGTGCAAGCTACTACATGTACCGGA-A-TGATAGGTCACATGTGTAGTACTA
*
9705238 TGTGCAGGCTACTATGTGAACCGG
64 TGTGCAGCCTACTATGTGAACCGG
9705262 TATCATTAAT
Statistics
Matches: 78, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
101 35 0.45
102 39 0.50
103 4 0.05
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.32
Consensus pattern (101 bp):
GTGTGTAGTACTATGTGCAAGCTACTACATGTACCGGAATGATAGGTCACATGTGTAGTACTATG
TGCAGCCTACTATGTGAACCGGATAGCTTCGATCAT
Done.