Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 34 of 207
Found at i:9705348 original size:46 final size:43
Alignment explanation
Indices: 9705257--9705341 Score: 116
Period size: 46 Copynumber: 1.9 Consensus size: 43
9705247 TACTATGTGA
*
9705257 ACCGGTATCATTAATTATAAGGTGGTTGCTATATGCTGATCCC
1 ACCGGTATCATTAATTAAAAGGTGGTTGCTATATGCTGATCCC
* *
9705300 ACCGGATATCATTGATTACAAAGGGTGGTTGCTGTATGCTGA
1 ACCGG-TATCATTAATTA-AAA-GGTGGTTGCTATATGCTGA
9705342 ATCCACCATC
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
43 5 0.14
44 11 0.31
45 2 0.06
46 18 0.50
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (43 bp):
ACCGGTATCATTAATTAAAAGGTGGTTGCTATATGCTGATCCC
Found at i:9705513 original size:16 final size:16
Alignment explanation
Indices: 9705475--9705506 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
9705465 TGATTGAAAG
*
9705475 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
9705491 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
9705507 GCAAAAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:9708861 original size:16 final size:16
Alignment explanation
Indices: 9708818--9708868 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
9708808 TATTTGAATG
*
9708818 TTTATGATATGATTGA
1 TTTATGATATAATTGA
**
9708834 -TTATTTTAATAATTGA
1 TTTATGAT-ATAATTGA
9708850 TTTATGATATAATTGA
1 TTTATGATATAATTGA
9708866 TTT
1 TTT
9708869 GTAATTTTGA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
15 5 0.18
16 18 0.64
17 5 0.18
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (16 bp):
TTTATGATATAATTGA
Found at i:9710532 original size:27 final size:26
Alignment explanation
Indices: 9710493--9710824 Score: 287
Period size: 27 Copynumber: 12.3 Consensus size: 26
9710483 GTAATGAGCT
*
9710493 TAAAATGATCGAAATACCCTCGAAGGG
1 TAAAATGACCGAAATACCCTC-AAGGG
* *
9710520 TAAAATAACCGAAATACCCTCAAAAGG
1 TAAAATGACCGAAATACCCTC-AAGGG
* * * *
9710547 TAAAATTATCGAAATACCCCCAAATGG
1 TAAAATGACCGAAATACCCTC-AAGGG
*
9710574 TAAAATGACCGAAATACCCTTGAAGGG
1 TAAAATGACCGAAATACCC-TCAAGGG
* *
9710601 TAAAATGACTGAAATACCCTCGAAGGA
1 TAAAATGACCGAAATACCCTC-AAGGG
9710628 TAAAATGACCGAAATACCCTCAAAGGG
1 TAAAATGACCGAAATACCCTC-AAGGG
* *
9710655 TAAAATGACCGAAATACCCCCATAAGG
1 TAAAATGACCGAAATACCCTCA-AGGG
** *
9710682 TAAAATGATTGAAATATCCCT-ATAGAG
1 TAAAATGACCGAAATA-CCCTCA-AGGG
* *
9710709 TAAAATAACCG-AATGCCCTCATAGGG
1 TAAAATGACCGAAATACCCTCA-AGGG
9710735 TAAAATGACC-AAATTACCC-CTATAGGG
1 TAAAATGACCGAAA-TACCCTC-A-AGGG
9710762 TAAAATGACCGAAATACTCC-CATAGGG
1 TAAAATGACCGAAATAC-CCTCA-AGGG
* * * * *
9710789 TAAAATAATCAAAATACCCCCATAAGG
1 TAAAATGACCGAAATACCCTCA-AGGG
9710816 TAAAATGAC
1 TAAAATGAC
9710825 TATTATACCC
Statistics
Matches: 255, Mismatches: 39, Indels: 22
0.81 0.12 0.07
Matches are distributed among these distances:
25 4 0.02
26 24 0.09
27 218 0.85
28 9 0.04
ACGTcount: A:0.44, C:0.20, G:0.16, T:0.19
Consensus pattern (26 bp):
TAAAATGACCGAAATACCCTCAAGGG
Found at i:9710804 original size:107 final size:107
Alignment explanation
Indices: 9710516--9710821 Score: 311
Period size: 107 Copynumber: 2.9 Consensus size: 107
9710506 ATACCCTCGA
* * * *
9710516 AGGGTAAAATAACCGAAATACCCTCAAAAGGTAAAATTATCGAAATACCCCCA-AATGGTAAAAT
1 AGGGTAAAATGACCGAAATACCCTCAAAGGGTAAAATGACCGAAATACCCCCATAA-GGTAAAAT
* * * * * * *
9710580 GACCGAAATA--CCCTTGAAGGGTAAAATGACTGAAATACCCTCGA-
65 AATCAAAATACCCCCAT-AA-GGTAAAATAACCG-AATGCCCTC-AT
* *
9710624 AGGATAAAATGACCGAAATACCCTCAAAGGGTAAAATGACCGAAATACCCCCATAAGGTAAAATG
1 AGGGTAAAATGACCGAAATACCCTCAAAGGGTAAAATGACCGAAATACCCCCATAAGGTAAAATA
** * *
9710689 ATTGAAATATCCCTAT-AGAGTAAAATAACCGAATGCCCTCAT
66 ATCAAAATACCCCCATAAG-GTAAAATAACCGAATGCCCTCAT
* * *
9710731 AGGGTAAAATGACC-AAATTACCC-CTATAGGGTAAAATGACCGAAATACTCCCATAGGGTAAAA
1 AGGGTAAAATGACCGAAA-TACCCTC-AAAGGGTAAAATGACCGAAATACCCCCATAAGGTAAAA
9710794 TAATCAAAATACCCCCATAAGGTAAAAT
64 TAATCAAAATACCCCCATAAGGTAAAAT
9710822 GACTATTATA
Statistics
Matches: 169, Mismatches: 21, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
106 5 0.03
107 82 0.49
108 77 0.46
109 2 0.01
110 3 0.02
ACGTcount: A:0.44, C:0.20, G:0.16, T:0.19
Consensus pattern (107 bp):
AGGGTAAAATGACCGAAATACCCTCAAAGGGTAAAATGACCGAAATACCCCCATAAGGTAAAATA
ATCAAAATACCCCCATAAGGTAAAATAACCGAATGCCCTCAT
Found at i:9711194 original size:28 final size:28
Alignment explanation
Indices: 9711154--9711230 Score: 136
Period size: 28 Copynumber: 2.8 Consensus size: 28
9711144 GTACCGATAT
*
9711154 TGTATTAGGCTAAGGTCCACATTGTTAC
1 TGTATTAGGCTAAGGCCCACATTGTTAC
9711182 TGTATTAGGCTAAGGCCCACATTGTTAC
1 TGTATTAGGCTAAGGCCCACATTGTTAC
*
9711210 TGTATTGGGCTAAGGCCCACA
1 TGTATTAGGCTAAGGCCCACA
9711231 CTATACTGTA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (28 bp):
TGTATTAGGCTAAGGCCCACATTGTTAC
Found at i:9712454 original size:18 final size:20
Alignment explanation
Indices: 9712423--9712459 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
9712413 TTGGGGGGTC
9712423 AAATTATGATTTC-ACTTTT
1 AAATTATGATTTCAACTTTT
9712442 AAATTAT-ATTTCAACTTT
1 AAATTATGATTTCAACTTT
9712460 GGATTTAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.35, C:0.11, G:0.03, T:0.51
Consensus pattern (20 bp):
AAATTATGATTTCAACTTTT
Found at i:9712613 original size:20 final size:19
Alignment explanation
Indices: 9712588--9712645 Score: 59
Period size: 20 Copynumber: 3.1 Consensus size: 19
9712578 GGTCAATTTT
9712588 CCAAAATTTATCGAATTAGG
1 CCAAAA-TTATCGAATTAGG
*
9712608 CCAAAA-AAT-GAATT-GG
1 CCAAAATTATCGAATTAGG
*
9712624 CCAAAAATTATCAAATTAGG
1 CC-AAAATTATCGAATTAGG
9712644 CC
1 CC
9712646 TAGAAAATGC
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
16 4 0.13
17 9 0.29
18 4 0.13
19 4 0.13
20 10 0.32
ACGTcount: A:0.45, C:0.17, G:0.14, T:0.24
Consensus pattern (19 bp):
CCAAAATTATCGAATTAGG
Found at i:9713003 original size:15 final size:15
Alignment explanation
Indices: 9712983--9713016 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
9712973 TACCAAAAGG
9712983 GTATTTACAACAATT
1 GTATTTACAACAATT
* *
9712998 GTATTTACACCATTT
1 GTATTTACAACAATT
9713013 GTAT
1 GTAT
9713017 ATTCAAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.32, C:0.15, G:0.09, T:0.44
Consensus pattern (15 bp):
GTATTTACAACAATT
Found at i:9714773 original size:17 final size:17
Alignment explanation
Indices: 9714746--9714788 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
9714736 AAAATGAAAA
9714746 CAAAAACCAAT-TTTGATT
1 CAAAAA-CAATATTT-ATT
9714764 CAAAAACAATATTTATT
1 CAAAAACAATATTTATT
*
9714781 TAAAAACA
1 CAAAAACA
9714789 TTTCATATCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 14 0.61
18 9 0.39
ACGTcount: A:0.53, C:0.14, G:0.02, T:0.30
Consensus pattern (17 bp):
CAAAAACAATATTTATT
Found at i:9727772 original size:42 final size:42
Alignment explanation
Indices: 9727711--9727813 Score: 109
Period size: 42 Copynumber: 2.5 Consensus size: 42
9727701 ATCAGTTTCC
* * * * *
9727711 GTTTAACTCTAATGAGTTT-CAGTTCAGCTCTTATAAGCTTTT
1 GTTTAACCCTTATGGGTTTCCA-TTCAGCTCCTACAAGCTTTT
**
9727753 GTTTAACCCTTATGGGTTTCCATTCAGCTCCTACGTGCTTTT
1 GTTTAACCCTTATGGGTTTCCATTCAGCTCCTACAAGCTTTT
* *
9727795 GTTCAGCCCTTATGGGTTT
1 GTTTAACCCTTATGGGTTT
9727814 TTGTTTAGCA
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 49 0.96
43 2 0.04
ACGTcount: A:0.17, C:0.21, G:0.17, T:0.44
Consensus pattern (42 bp):
GTTTAACCCTTATGGGTTTCCATTCAGCTCCTACAAGCTTTT
Found at i:9750984 original size:18 final size:19
Alignment explanation
Indices: 9750961--9750997 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
9750951 TCATGAAACT
9750961 AAGTTTAACATTT-TAATC
1 AAGTTTAACATTTATAATC
*
9750979 AAGTTTAATATTTATAATC
1 AAGTTTAACATTTATAATC
9750998 TATATAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.46
Consensus pattern (19 bp):
AAGTTTAACATTTATAATC
Found at i:9754893 original size:2 final size:2
Alignment explanation
Indices: 9754886--9754910 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
9754876 ACTATGCTTA
9754886 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
9754911 AACATTGGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9789913 original size:22 final size:22
Alignment explanation
Indices: 9789888--9789938 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
9789878 GACAAGCCAC
* *
9789888 CACTGATTTGCAGATAAATTGT
1 CACTGATTTACAGATAAACTGT
9789910 CACTGATTTACAGATAAACTGT
1 CACTGATTTACAGATAAACTGT
*
9789932 CATTGAT
1 CACTGAT
9789939 AACACAGATG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (22 bp):
CACTGATTTACAGATAAACTGT
Found at i:9797318 original size:27 final size:27
Alignment explanation
Indices: 9797297--9797454 Score: 201
Period size: 27 Copynumber: 5.9 Consensus size: 27
9797287 AAAATGACTA
9797297 AAATACCCCCATAGGGTAAAATGATCG
1 AAATACCCCCATAGGGTAAAATGATCG
*
9797324 AAATACCCCCATAGGGTAAAATTATCG
1 AAATACCCCCATAGGGTAAAATGATCG
*
9797351 AAATACCCCCATATGGTAAAATGATCG
1 AAATACCCCCATAGGGTAAAATGATCG
* * *
9797378 AAATACTCTCC-TAGGGTAAAATAACCG
1 AAATAC-CCCCATAGGGTAAAATGATCG
* * *
9797405 AAATACCCTCATAGGGTAGAATGATTG
1 AAATACCCCCATAGGGTAAAATGATCG
* **
9797432 AGATACCCTTATAGGGTAAAATG
1 AAATACCCCCATAGGGTAAAATG
9797455 TCTGTTATGG
Statistics
Matches: 113, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 2 0.02
27 108 0.96
28 3 0.03
ACGTcount: A:0.40, C:0.20, G:0.18, T:0.23
Consensus pattern (27 bp):
AAATACCCCCATAGGGTAAAATGATCG
Found at i:9797891 original size:28 final size:28
Alignment explanation
Indices: 9797859--9798039 Score: 267
Period size: 28 Copynumber: 6.5 Consensus size: 28
9797849 CTATATTGAG
*
9797859 TAAGGCCCACACTGATTCTGTATGGGGC
1 TAAGGCCCACACTGATTCTGTATTGGGC
* *
9797887 TAAGGCCCACACTG-TCACTGTATTGGAC
1 TAAGGCCCACACTGAT-TCTGTATTGGGC
9797915 TAAGGCCCACACTGATTCTGTATTGGGC
1 TAAGGCCCACACTGATTCTGTATTGGGC
* *
9797943 TAAGGCCTACACTAATTCTGTATTGGGC
1 TAAGGCCCACACTGATTCTGTATTGGGC
9797971 TAAGGCCCACACTGATTCTGTATTGGGC
1 TAAGGCCCACACTGATTCTGTATTGGGC
*
9797999 TAAAGCCCACACTG-TTACTGTATTGGGC
1 TAAGGCCCACACTGATT-CTGTATTGGGC
*
9798027 TAAGGCCTACACT
1 TAAGGCCCACACT
9798040 ATACTGTCAC
Statistics
Matches: 138, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
27 3 0.02
28 134 0.97
29 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28
Consensus pattern (28 bp):
TAAGGCCCACACTGATTCTGTATTGGGC
Found at i:9827294 original size:14 final size:15
Alignment explanation
Indices: 9827271--9827303 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
9827261 AATTAAAATA
9827271 TAAATAAAACTAA-T
1 TAAATAAAACTAACT
*
9827285 TAAATTAAACTAACT
1 TAAATAAAACTAACT
9827300 TAAA
1 TAAA
9827304 CTAACTTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (15 bp):
TAAATAAAACTAACT
Found at i:9828283 original size:27 final size:27
Alignment explanation
Indices: 9828253--9828496 Score: 197
Period size: 27 Copynumber: 9.0 Consensus size: 27
9828243 ATATATATCA
* *
9828253 TACCCTTCGGGGGTATTTCATTCATCT
1 TACCCTTCGGGGGTATTTCAGTCATTT
* *
9828280 TACCC-TCTAGGGGTGTTT-AGGTCATTT
1 TACCCTTC-GGGGGTATTTCA-GTCATTT
9828307 TACCCTTCGGGGGTATTTCAGTCATTT
1 TACCCTTCGGGGGTATTTCAGTCATTT
* * *
9828334 TACCCTTAGAGGGTATTTCTGTCATTT
1 TACCCTTCGGGGGTATTTCAGTCATTT
* * **
9828361 TACCCTTTGAGGGTATTTTGGTCATTT
1 TACCCTTCGGGGGTATTTCAGTCATTT
** *
9828388 TACCCTTCAAGGATATTTC-GATCATTT
1 TACCCTTCGGGGGTATTTCAG-TCATTT
** * **
9828415 TACATTTCGAGGGTATTTTGGTCATTT
1 TACCCTTCGGGGGTATTTCAGTCATTT
** * *
9828442 TACCCTTCAAGGGTATTTCGGTCAATT
1 TACCCTTCGGGGGTATTTCAGTCATTT
* * * *
9828469 TACCTTTTGAGGGTATTTTAGTCATTT
1 TACCCTTCGGGGGTATTTCAGTCATTT
9828496 T
1 T
9828497 CCCACAAACT
Statistics
Matches: 179, Mismatches: 32, Indels: 12
0.80 0.14 0.05
Matches are distributed among these distances:
26 4 0.02
27 171 0.96
28 4 0.02
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.44
Consensus pattern (27 bp):
TACCCTTCGGGGGTATTTCAGTCATTT
Found at i:9828337 original size:54 final size:54
Alignment explanation
Indices: 9828253--9828496 Score: 276
Period size: 54 Copynumber: 4.5 Consensus size: 54
9828243 ATATATATCA
* * * * * * *
9828253 TACCCTTCGGGGGTATTTCATTCATCTTACCC-TCTAGGGGTGTTTAGGTCATTT
1 TACCCTTCGAGGGTATTTTAGTCATTTTACCCTTC-AAGGGTATTTCGGTCATTT
* * *
9828307 TACCCTTCGGGGGTATTTCAGTCATTTTACCCTT-AGAGGGTATTTCTGTCATTT
1 TACCCTTCGAGGGTATTTTAGTCATTTTACCCTTCA-AGGGTATTTCGGTCATTT
* * * *
9828361 TACCCTTTGAGGGTATTTTGGTCATTTTACCCTTCAAGGATATTTCGATCATTT
1 TACCCTTCGAGGGTATTTTAGTCATTTTACCCTTCAAGGGTATTTCGGTCATTT
** * *
9828415 TACATTTCGAGGGTATTTTGGTCATTTTACCCTTCAAGGGTATTTCGGTCAATT
1 TACCCTTCGAGGGTATTTTAGTCATTTTACCCTTCAAGGGTATTTCGGTCATTT
* *
9828469 TACCTTTTGAGGGTATTTTAGTCATTTT
1 TACCCTTCGAGGGTATTTTAGTCATTTT
9828497 CCCACAAACT
Statistics
Matches: 165, Mismatches: 22, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 162 0.98
55 2 0.01
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.44
Consensus pattern (54 bp):
TACCCTTCGAGGGTATTTTAGTCATTTTACCCTTCAAGGGTATTTCGGTCATTT
Found at i:9828364 original size:81 final size:80
Alignment explanation
Indices: 9828253--9828496 Score: 260
Period size: 81 Copynumber: 3.0 Consensus size: 80
9828243 ATATATATCA
* * * *
9828253 TACCCTTCGGGGGTATTTCAT-TCATCTTACCCTCTAGGGGTGTTTAGGTCATTTTACCCTTCGG
1 TACCCTTCGAGGGTATTTC-TGTCATTTTACCCT-TAGGGGTATTTAGGTCATTTTACCCTTCGA
9828317 GGGTATTTCAGTCATTT
64 GGGTATTTCAGTCATTT
* * * *
9828334 TACCCTTAGAGGGTATTTCTGTCATTTTACCCTTTGAGGGTATTTTGGTCATTTTACCCTTCAAG
1 TACCCTTCGAGGGTATTTCTGTCATTTTACCCTTAG-GGGTATTTAGGTCATTTTACCCTTCGAG
*
9828399 GATATTTC-GATCATTT
65 GGTATTTCAG-TCATTT
** * * * * *
9828415 TACATTTCGAGGGTATTT-TGGTCATTTTACCCTTCAAGGGTATTTCGGTCAATTTACCTTTTGA
1 TACCCTTCGAGGGTATTTCT-GTCATTTTACCCTT-AGGGGTATTTAGGTCATTTTACCCTTCGA
*
9828479 GGGTATTTTAGTCATTT
64 GGGTATTTCAGTCATTT
9828496 T
1 T
9828497 CCCACAAACT
Statistics
Matches: 136, Mismatches: 21, Indels: 12
0.80 0.12 0.07
Matches are distributed among these distances:
80 5 0.04
81 130 0.96
82 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.44
Consensus pattern (80 bp):
TACCCTTCGAGGGTATTTCTGTCATTTTACCCTTAGGGGTATTTAGGTCATTTTACCCTTCGAGG
GTATTTCAGTCATTT
Found at i:9831777 original size:12 final size:12
Alignment explanation
Indices: 9831760--9831786 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
9831750 CACTTGCCCT
9831760 TGTGCTAGGCCG
1 TGTGCTAGGCCG
9831772 TGTGCTAGGCCG
1 TGTGCTAGGCCG
9831784 TGT
1 TGT
9831787 AACAACCTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.22, G:0.41, T:0.30
Consensus pattern (12 bp):
TGTGCTAGGCCG
Found at i:9833970 original size:26 final size:26
Alignment explanation
Indices: 9833940--9833996 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
9833930 TCCTTTAAAA
9833940 ATCACTTAAATGATGTCCATCTTTGT
1 ATCACTTAAATGATGTCCATCTTTGT
* *
9833966 ATCACTTAAATGGTGTTCATCTTTGT
1 ATCACTTAAATGATGTCCATCTTTGT
9833992 -TCACT
1 ATCACT
9833997 AAGTATATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 5 0.17
26 24 0.83
ACGTcount: A:0.25, C:0.19, G:0.12, T:0.44
Consensus pattern (26 bp):
ATCACTTAAATGATGTCCATCTTTGT
Found at i:9845559 original size:84 final size:84
Alignment explanation
Indices: 9845465--9845633 Score: 320
Period size: 84 Copynumber: 2.0 Consensus size: 84
9845455 ACAACTCTAT
*
9845465 TCTCGGCTTTTATTTAAAACATGTGTTTTAACAGTTAAAAAATTAGTTTCAAAGGCCTAATAACA
1 TCTCGGCTTTTATTTAAAAAATGTGTTTTAACAGTTAAAAAATTAGTTTCAAAGGCCTAATAACA
*
9845530 TTAAAAAGTAATAAGAAAG
66 TTAAAAACTAATAAGAAAG
9845549 TCTCGGCTTTTATTTAAAAAATGTGTTTTAACAGTTAAAAAATTAGTTTCAAAGGCCTAATAACA
1 TCTCGGCTTTTATTTAAAAAATGTGTTTTAACAGTTAAAAAATTAGTTTCAAAGGCCTAATAACA
9845614 TTAAAAACTAATAAGAAAG
66 TTAAAAACTAATAAGAAAG
9845633 T
1 T
9845634 GAATGGTTAC
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
84 83 1.00
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.34
Consensus pattern (84 bp):
TCTCGGCTTTTATTTAAAAAATGTGTTTTAACAGTTAAAAAATTAGTTTCAAAGGCCTAATAACA
TTAAAAACTAATAAGAAAG
Found at i:9848552 original size:20 final size:20
Alignment explanation
Indices: 9848489--9848553 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
9848479 TACTTCGATA
* *
9848489 CCCCTAAATGCACATACATG
1 CCCCTGAATGCACATACGTG
** * * *
9848509 CCCCTGTTTGTAC-TTCAGTA
1 CCCCTGAATGCACATAC-GTG
9848529 CCCCTGAATGCACATACGTG
1 CCCCTGAATGCACATACGTG
9848549 CCCCT
1 CCCCT
9848554 ATTTATACTC
Statistics
Matches: 31, Mismatches: 12, Indels: 4
0.66 0.26 0.09
Matches are distributed among these distances:
19 2 0.06
20 27 0.87
21 2 0.06
ACGTcount: A:0.23, C:0.37, G:0.14, T:0.26
Consensus pattern (20 bp):
CCCCTGAATGCACATACGTG
Found at i:9848576 original size:40 final size:40
Alignment explanation
Indices: 9848453--9848577 Score: 160
Period size: 40 Copynumber: 3.1 Consensus size: 40
9848443 AATTATTGAA
* *
9848453 TGAATGCACAGACATGCCCCTGTTTGTACTTCGATACCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* *
9848493 TAAATGCACATACATGCCCCTGTTTGTACTTCAGTACCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* * * * * *
9848533 TGAATGCACATACGTGCCCCTATTTATACTCCGGTAACTC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
9848573 TGAAT
1 TGAAT
9848578 TAAATAGTAT
Statistics
Matches: 73, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 73 1.00
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.30
Consensus pattern (40 bp):
TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
Found at i:9861028 original size:23 final size:23
Alignment explanation
Indices: 9861002--9861045 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
9860992 TAAATGGCAT
9861002 ATAC-CATCAAAACCATTTAATAA
1 ATACTCAT-AAAACCATTTAATAA
* *
9861025 ATACTCCTAAAGCCATTTAAT
1 ATACTCATAAAACCATTTAAT
9861046 CCATGTAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 16 0.89
24 2 0.11
ACGTcount: A:0.45, C:0.23, G:0.02, T:0.30
Consensus pattern (23 bp):
ATACTCATAAAACCATTTAATAA
Found at i:9864759 original size:41 final size:41
Alignment explanation
Indices: 9864702--9864971 Score: 274
Period size: 41 Copynumber: 6.6 Consensus size: 41
9864692 TTATCCTATA
* * *
9864702 AATTGCACATATGTGCCCCTGTTTGTACTTCGGTACCCTTG
1 AATTGCACATACGTGCCCCTGATTGTACTTCGGTACCCCTG
* * *
9864743 AATTGCACATACGTGCCCTTGTTTGTACGTT-GGTACCCCTA
1 AATTGCACATACGTGCCCCTGATTGTAC-TTCGGTACCCCTG
*
9864784 AATTGCACATACGTGCCCCTGATTGTACTTCAGTACCCCTG
1 AATTGCACATACGTGCCCCTGATTGTACTTCGGTACCCCTG
* * * * * *
9864825 ACGTT-CACATATGTTCCCTTGATTATACTTCGGTACCTCTG
1 A-ATTGCACATACGTGCCCCTGATTGTACTTCGGTACCCCTG
* * * *
9864866 CATTGCACATACGTGCCCCTAATTGTAATTCGGTACCCCTA
1 AATTGCACATACGTGCCCCTGATTGTACTTCGGTACCCCTG
* * * * ** *
9864907 AATTCCATATACGTGCCCTTGTTTGTACTTCACTACTCCTG
1 AATTGCACATACGTGCCCCTGATTGTACTTCGGTACCCCTG
* *
9864948 AATTGCACATGCGTGACCCTGATT
1 AATTGCACATACGTGCCCCTGATT
9864972 ACACTCTGGT
Statistics
Matches: 183, Mismatches: 42, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
40 4 0.02
41 175 0.96
42 4 0.02
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.34
Consensus pattern (41 bp):
AATTGCACATACGTGCCCCTGATTGTACTTCGGTACCCCTG
Found at i:9864957 original size:123 final size:123
Alignment explanation
Indices: 9864702--9864972 Score: 323
Period size: 123 Copynumber: 2.2 Consensus size: 123
9864692 TTATCCTATA
* * * **
9864702 AATTGCACATATGTGCCCCTGTTTGTACTTCGGTACCCTTGAATTGCACATACGTGCCCTTGTTT
1 AATTGCACATATGTGCCCCTGATTATACTTCGGTACCCTTGAATTGCACATACGTGCCCCTAATT
* * *
9864767 GTACGTTGGTACCCCTAAATTGCACATACGTGCCCCTGATTGTACTTCAGTACCCCTG
66 GTACATTGGTACCCCTAAATTCCACATACGTGCCCCTGATTGTACTTCACTACCCCTG
* * * *
9864825 ACGTT-CACATATGTTCCCTTGATTATACTTCGGTA-CCTCTGCATTGCACATACGTGCCCCTAA
1 A-ATTGCACATATGTGCCCCTGATTATACTTCGGTACCCT-TGAATTGCACATACGTGCCCCTAA
* * * *
9864888 TTGTA-ATTCGGTACCCCTAAATTCCATATACGTGCCCTTGTTTGTACTTCACTACTCCTG
64 TTGTACATT-GGTACCCCTAAATTCCACATACGTGCCCCTGATTGTACTTCACTACCCCTG
** *
9864948 AATTGCACATGCGTGACCCTGATTA
1 AATTGCACATATGTGCCCCTGATTA
9864973 CACTCTGGTA
Statistics
Matches: 122, Mismatches: 22, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
122 7 0.06
123 113 0.93
124 2 0.02
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (123 bp):
AATTGCACATATGTGCCCCTGATTATACTTCGGTACCCTTGAATTGCACATACGTGCCCCTAATT
GTACATTGGTACCCCTAAATTCCACATACGTGCCCCTGATTGTACTTCACTACCCCTG
Found at i:9865944 original size:11 final size:11
Alignment explanation
Indices: 9865930--9865968 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
9865920 GCAATTTTGT
9865930 AATTAAAGTGA
1 AATTAAAGTGA
**
9865941 AATTAAA-ACA
1 AATTAAAGTGA
9865951 AATTAAAGTGA
1 AATTAAAGTGA
9865962 AATTAAA
1 AATTAAA
9865969 ACACTTTAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
10 8 0.35
11 15 0.65
ACGTcount: A:0.62, C:0.03, G:0.10, T:0.26
Consensus pattern (11 bp):
AATTAAAGTGA
Found at i:9865977 original size:21 final size:21
Alignment explanation
Indices: 9865930--9865971 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
9865920 GCAATTTTGT
9865930 AATTAAAGTGAAATTAAAACA
1 AATTAAAGTGAAATTAAAACA
9865951 AATTAAAGTGAAATTAAAACA
1 AATTAAAGTGAAATTAAAACA
9865972 CTTTAATTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.62, C:0.05, G:0.10, T:0.24
Consensus pattern (21 bp):
AATTAAAGTGAAATTAAAACA
Found at i:9866914 original size:21 final size:21
Alignment explanation
Indices: 9866888--9866974 Score: 84
Period size: 21 Copynumber: 4.1 Consensus size: 21
9866878 GATTTGGGTG
* *
9866888 GTTCAGCTCTTACGAGCTTTT
1 GTTCAGCTCTCACGAGCTTCT
9866909 GTTCAGCTCTCACGAGCTTCT
1 GTTCAGCTCTCACGAGCTTCT
* * * *
9866930 GTTCGGCTATCATGAGCTTTT
1 GTTCAGCTCTCACGAGCTTCT
* * * *
9866951 ATTTAGCTCTTATGAGCTTCT
1 GTTCAGCTCTCACGAGCTTCT
9866972 GTT
1 GTT
9866975 GACGTGTTCT
Statistics
Matches: 53, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 53 1.00
ACGTcount: A:0.15, C:0.23, G:0.20, T:0.43
Consensus pattern (21 bp):
GTTCAGCTCTCACGAGCTTCT
Found at i:9872958 original size:27 final size:27
Alignment explanation
Indices: 9872928--9872982 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
9872918 AATGCGTTAA
9872928 AATGCACAGATGAGAATGAGGAATGTC
1 AATGCACAGATGAGAATGAGGAATGTC
9872955 AATGCACAGATGAGAATGAGGAATGTC
1 AATGCACAGATGAGAATGAGGAATGTC
9872982 A
1 A
9872983 CACTATTGGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.42, C:0.11, G:0.29, T:0.18
Consensus pattern (27 bp):
AATGCACAGATGAGAATGAGGAATGTC
Found at i:9886477 original size:19 final size:17
Alignment explanation
Indices: 9886445--9886480 Score: 54
Period size: 19 Copynumber: 2.0 Consensus size: 17
9886435 TATATTGCGA
9886445 TAAAAAATAAAATAAAT
1 TAAAAAATAAAATAAAT
9886462 TAAAGAAATAAAAATAAAT
1 TAAA-AAAT-AAAATAAAT
9886481 AAATAAGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 4 0.24
19 9 0.53
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (17 bp):
TAAAAAATAAAATAAAT
Found at i:9886480 original size:23 final size:24
Alignment explanation
Indices: 9886447--9886498 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 24
9886437 TATTGCGATA
*
9886447 AAAAATAAAATAAATTAA-AGAAAT
1 AAAAATAAAATAAA-TAAGAAAAAT
9886471 AAAAAT-AAATAAATAAGAAAAAT
1 AAAAATAAAATAAATAAGAAAAAT
9886494 AAAAA
1 AAAAA
9886499 AATGATTGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 3 0.12
23 17 0.65
24 6 0.23
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.17
Consensus pattern (24 bp):
AAAAATAAAATAAATAAGAAAAAT
Found at i:9886483 original size:18 final size:17
Alignment explanation
Indices: 9886444--9886500 Score: 64
Period size: 17 Copynumber: 3.4 Consensus size: 17
9886434 CTATATTGCG
9886444 ATAAAAAAT-AAAATAA
1 ATAAAAAATAAAAATAA
9886460 ATTAAAGAAATAAAAATAA
1 A-TAAA-AAATAAAAATAA
* *
9886479 ATAAATAAGAAAAATAA
1 ATAAAAAATAAAAATAA
9886496 A-AAAA
1 ATAAAA
9886501 TGATTGAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
16 4 0.11
17 15 0.43
18 8 0.23
19 8 0.23
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.18
Consensus pattern (17 bp):
ATAAAAAATAAAAATAA
Found at i:9889422 original size:16 final size:17
Alignment explanation
Indices: 9889391--9889428 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
9889381 TGTAATTGAA
*
9889391 TAAATTCAATTAAAACC
1 TAAATTCAAATAAAACC
9889408 TAAATT-AAATAAAACC
1 TAAATTCAAATAAAACC
*
9889424 AAAAT
1 TAAAT
9889429 GGCTTCAGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.61, C:0.13, G:0.00, T:0.26
Consensus pattern (17 bp):
TAAATTCAAATAAAACC
Found at i:9894991 original size:18 final size:19
Alignment explanation
Indices: 9894968--9895009 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
9894958 TGGTAGGCCG
*
9894968 TGTGATCGA-ACATGGGCA
1 TGTGATCGACACACGGGCA
9894986 TGTGATCGACACACGGGCA
1 TGTGATCGACACACGGGCA
9895005 TGTGA
1 TGTGA
9895010 ACGCGTGGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 9 0.41
19 13 0.59
ACGTcount: A:0.26, C:0.19, G:0.33, T:0.21
Consensus pattern (19 bp):
TGTGATCGACACACGGGCA
Found at i:9898581 original size:36 final size:36
Alignment explanation
Indices: 9898541--9898611 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 36
9898531 TTTGTATTTA
*
9898541 TTTTGAAGGTGAATTAAACGACGAGATCAAGCTATG
1 TTTTGAAGATGAATTAAACGACGAGATCAAGCTATG
* * *
9898577 TTTTGAAGATGGATTAAATGATGAGATCAAGCTAT
1 TTTTGAAGATGAATTAAACGACGAGATCAAGCTAT
9898612 TGGTTGGTTC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.37, C:0.08, G:0.24, T:0.31
Consensus pattern (36 bp):
TTTTGAAGATGAATTAAACGACGAGATCAAGCTATG
Found at i:9903765 original size:13 final size:12
Alignment explanation
Indices: 9903745--9903782 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
9903735 TCATATTGTA
9903745 TAATTTTCTCTT
1 TAATTTTCTCTT
9903757 TAGATTTTCTCTT
1 TA-ATTTTCTCTT
*
9903770 TATTTTTCTCTT
1 TAATTTTCTCTT
9903782 T
1 T
9903783 TCTTAGGTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 12 0.50
13 12 0.50
ACGTcount: A:0.13, C:0.16, G:0.03, T:0.68
Consensus pattern (12 bp):
TAATTTTCTCTT
Found at i:9903778 original size:12 final size:13
Alignment explanation
Indices: 9903747--9903782 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
9903737 ATATTGTATA
9903747 ATTTTCTCTTTAG
1 ATTTTCTCTTTAG
9903760 ATTTTCTCTTTA-
1 ATTTTCTCTTTAG
*
9903772 TTTTTCTCTTT
1 ATTTTCTCTTT
9903783 TCTTAGGTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 10 0.45
13 12 0.55
ACGTcount: A:0.11, C:0.17, G:0.03, T:0.69
Consensus pattern (13 bp):
ATTTTCTCTTTAG
Found at i:9909679 original size:19 final size:19
Alignment explanation
Indices: 9909652--9909688 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
9909642 CCATTTTCAT
*
9909652 TTAACTAAAAAATGAAAAA
1 TTAAATAAAAAATGAAAAA
*
9909671 TTAAATAAAAAATTAAAA
1 TTAAATAAAAAATGAAAA
9909689 TGATTTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.24
Consensus pattern (19 bp):
TTAAATAAAAAATGAAAAA
Found at i:9910792 original size:4 final size:4
Alignment explanation
Indices: 9910783--9910833 Score: 102
Period size: 4 Copynumber: 12.8 Consensus size: 4
9910773 CATCGTCAAC
9910783 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
9910831 TAT
1 TAT
9910834 CATATATATA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 47 1.00
ACGTcount: A:0.25, C:0.00, G:0.24, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:9913649 original size:18 final size:19
Alignment explanation
Indices: 9913622--9913658 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
9913612 AGCTAGCTAG
*
9913622 GCTTTTGCTTTTG-TTTTC
1 GCTTTCGCTTTTGCTTTTC
9913640 GCTTTCGCTTTTGCTTTTC
1 GCTTTCGCTTTTGCTTTTC
9913659 CAAGGTCTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.00, C:0.22, G:0.16, T:0.62
Consensus pattern (19 bp):
GCTTTCGCTTTTGCTTTTC
Found at i:9937319 original size:6 final size:6
Alignment explanation
Indices: 9937295--9937335 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 6
9937285 GCAGATGTAT
* *
9937295 CATTTC TCATTTT CATTTC CATTTC CGTTTC CATTTC CATT
1 CATTTC -CATTTC CATTTC CATTTC CATTTC CATTTC CATT
9937336 ATGAGAAACC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
6 25 0.83
7 5 0.17
ACGTcount: A:0.15, C:0.29, G:0.02, T:0.54
Consensus pattern (6 bp):
CATTTC
Found at i:9939848 original size:45 final size:45
Alignment explanation
Indices: 9939784--9939872 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
9939774 AACAGATACT
* *
9939784 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
9939829 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
9939873 TTGGTTCACA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.25
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:9942817 original size:42 final size:42
Alignment explanation
Indices: 9942737--9942818 Score: 96
Period size: 42 Copynumber: 2.0 Consensus size: 42
9942727 CATTTTCTCT
* **
9942737 ATGCCATAGTTCAACTATGGTCTTACACATATTTACATATTG
1 ATGCCATAGTCCAACTATGGTCTTACACATATGCACATATTG
*
9942779 ATGCCATAG-CCAAGCTATGGTTTTACACA-ATAGCACATAT
1 ATGCCATAGTCCAA-CTATGGTCTTACACATAT-GCACATAT
9942819 CACACCGATG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
41 5 0.15
42 29 0.85
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (42 bp):
ATGCCATAGTCCAACTATGGTCTTACACATATGCACATATTG
Found at i:9945427 original size:50 final size:49
Alignment explanation
Indices: 9945362--9945461 Score: 155
Period size: 50 Copynumber: 2.0 Consensus size: 49
9945352 ATCGAAACCA
* *
9945362 TCCGGTACGCATAGTAGCCAGCACATAGTACTACACATGTGACCTATCAT
1 TCCGGTACACATAGTAGCCAGCACATAGTACTACACACGTGACC-ATCAT
* *
9945412 TCCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATCAT
1 TCCGGTACACATAGTAGCCAGCACATAGTACTACACACGTGACCATCAT
9945461 T
1 T
9945462 TTCACTTTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
49 6 0.13
50 40 0.87
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (49 bp):
TCCGGTACACATAGTAGCCAGCACATAGTACTACACACGTGACCATCAT
Found at i:9947449 original size:31 final size:30
Alignment explanation
Indices: 9947414--9947473 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
9947404 GGAGGTGGGA
*
9947414 TGGGAAGAGAATAAAAGTTTTAGGGGAAAAG
1 TGGG-AGAGAATAAAAATTTTAGGGGAAAAG
* * *
9947445 TGGGAGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAGAGAATAAAAATTTTAGGGGAAAA
9947474 TGAAAGGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.42, C:0.00, G:0.38, T:0.20
Consensus pattern (30 bp):
TGGGAGAGAATAAAAATTTTAGGGGAAAAG
Found at i:9947592 original size:30 final size:30
Alignment explanation
Indices: 9947553--9947612 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
9947543 GGGAGGGGAG
* * *
9947553 GGGAGGGAGTAAAAGTTTTGGGGGGAAAGT
1 GGGAAGGAGTAAAAGTTTTGAGGGAAAAGT
9947583 GGGAAGGAGTAAAAGTTTTGAGGGAAAAGT
1 GGGAAGGAGTAAAAGTTTTGAGGGAAAAGT
9947613 AAAAAAGTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.35, C:0.00, G:0.45, T:0.20
Consensus pattern (30 bp):
GGGAAGGAGTAAAAGTTTTGAGGGAAAAGT
Found at i:9947768 original size:9 final size:9
Alignment explanation
Indices: 9947751--9947781 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
9947741 TCGAGTTGAT
9947751 TCGAATAAC
1 TCGAATAAC
*
9947760 TCGATTAAC
1 TCGAATAAC
9947769 TCGAATAAC
1 TCGAATAAC
9947778 TCGA
1 TCGA
9947782 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:9948527 original size:5 final size:5
Alignment explanation
Indices: 9948510--9948550 Score: 75
Period size: 5 Copynumber: 8.4 Consensus size: 5
9948500 CATTTCCTTC
9948510 TGATA TG-TA TGATA TGATA TGATA TGATA TGATA TGATA TG
1 TGATA TGATA TGATA TGATA TGATA TGATA TGATA TGATA TG
9948551 TGGTAATGGA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 4 0.11
5 31 0.89
ACGTcount: A:0.37, C:0.00, G:0.22, T:0.41
Consensus pattern (5 bp):
TGATA
Found at i:9958738 original size:8 final size:8
Alignment explanation
Indices: 9958700--9958751 Score: 56
Period size: 7 Copynumber: 6.8 Consensus size: 8
9958690 AGATACGATA
9958700 TTTTTAA-
1 TTTTTAAT
9958707 TTTTTAAT
1 TTTTTAAT
*
9958715 TATTTAA-
1 TTTTTAAT
*
9958722 TTATT-AT
1 TTTTTAAT
9958729 TTTTTAATT
1 TTTTTAA-T
9958738 TTTTTAAT
1 TTTTTAAT
9958746 TTTTTA
1 TTTTTA
9958752 GGTTGTTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
6 1 0.03
7 14 0.38
8 14 0.38
9 8 0.22
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (8 bp):
TTTTTAAT
Found at i:9958749 original size:7 final size:7
Alignment explanation
Indices: 9958699--9958740 Score: 57
Period size: 7 Copynumber: 5.9 Consensus size: 7
9958689 TAGATACGAT
9958699 ATTTTTA
1 ATTTTTA
9958706 ATTTTTA
1 ATTTTTA
9958713 ATTATTTA
1 ATT-TTTA
*
9958721 ATTATTA
1 ATTTTTA
*
9958728 TTTTTTA
1 ATTTTTA
9958735 ATTTTT
1 ATTTTT
9958741 TTAATTTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
7 23 0.77
8 7 0.23
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
ATTTTTA
Found at i:9960211 original size:16 final size:16
Alignment explanation
Indices: 9960190--9960221 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
9960180 GTAAACTTAA
9960190 GTTAACTCTCTACACT
1 GTTAACTCTCTACACT
9960206 GTTAACTCTCTACACT
1 GTTAACTCTCTACACT
9960222 AATAGGGCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.31, G:0.06, T:0.38
Consensus pattern (16 bp):
GTTAACTCTCTACACT
Found at i:9965935 original size:19 final size:20
Alignment explanation
Indices: 9965893--9965941 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
9965883 TCATGCTTTC
*
9965893 TATTCACAATTTCATATTCA
1 TATTCACAATTTCAAATTCA
*
9965913 -ATTCACATTTTCAAATT-A
1 TATTCACAATTTCAAATTCA
9965931 TATTCCACAAT
1 TATT-CACAAT
9965942 CACGTTTCTT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 1 0.04
19 18 0.75
20 5 0.21
ACGTcount: A:0.37, C:0.20, G:0.00, T:0.43
Consensus pattern (20 bp):
TATTCACAATTTCAAATTCA
Found at i:9966188 original size:45 final size:44
Alignment explanation
Indices: 9966110--9966214 Score: 131
Period size: 45 Copynumber: 2.3 Consensus size: 44
9966100 AGTAATCAGT
*
9966110 ATCGGTAGTAGTAACAGTAACAGTATTCAACACACAAAGTGTT-GA
1 ATCGGTA-CAGTAACAGTAACAGTATTCAACACACAAAGT-TTCGA
* * * *
9966155 ATCTGTAACAGTAACGGTAATAGTATTCGACACACAAAGTTTCGA
1 ATCGGT-ACAGTAACAGTAACAGTATTCAACACACAAAGTTTCGA
9966200 ATCGGTACAGTAACA
1 ATCGGTACAGTAACA
9966215 TTACTCGACA
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
44 10 0.20
45 40 0.78
46 1 0.02
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (44 bp):
ATCGGTACAGTAACAGTAACAGTATTCAACACACAAAGTTTCGA
Found at i:9968897 original size:25 final size:25
Alignment explanation
Indices: 9968866--9968930 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
9968856 ATAAATGTTT
*
9968866 TAATAATCAGATAGCACTAGCGTGC
1 TAATAATCAGATAGCACTAACGTGC
* *
9968891 TATTAATCAGAGAGCACTAACGTGC
1 TAATAATCAGATAGCACTAACGTGC
9968916 TAATAATCAGATAGC
1 TAATAATCAGATAGC
9968931 GCGTTTAGGT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.25
Consensus pattern (25 bp):
TAATAATCAGATAGCACTAACGTGC
Found at i:9971079 original size:18 final size:19
Alignment explanation
Indices: 9971039--9971080 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
9971029 AGTACTTGAT
* * *
9971039 CAGTAATCAGTATCGGTAG
1 CAGTAATCAGTAACAGTAA
9971058 CAGTAA-CAGTAACAGTAA
1 CAGTAATCAGTAACAGTAA
9971076 CAGTA
1 CAGTA
9971081 TTCAACACAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.21
Consensus pattern (19 bp):
CAGTAATCAGTAACAGTAA
Found at i:9971111 original size:45 final size:45
Alignment explanation
Indices: 9971060--9971160 Score: 143
Period size: 45 Copynumber: 2.3 Consensus size: 45
9971050 ATCGGTAGCA
*
9971060 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGTT-GAATCT
1 GTAACAGTAACAGTAACAGTATTCAACACACAAAGT-TTCGAATCG
* * *
9971105 GTAACAGTAACGGTAATAGTATTCGACACACAAAGTTTCGAATCG
1 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTTTCGAATCG
9971150 GT-ACAGTAACA
1 GTAACAGTAACA
9971161 TTACTCGACA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
44 10 0.20
45 40 0.80
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.24
Consensus pattern (45 bp):
GTAACAGTAACAGTAACAGTATTCAACACACAAAGTTTCGAATCG
Found at i:9988442 original size:116 final size:116
Alignment explanation
Indices: 9988312--9988552 Score: 401
Period size: 116 Copynumber: 2.1 Consensus size: 116
9988302 CCAGTGTGCC
* *
9988312 AGGCCGTGTGCTAGGCCGTGTAACTTTCGAATTGCAACCCCAAAAACCTACAGGGGACACACAAC
1 AGGCCGTGTCCTAGGCCATGTAACTTTCGAATTGCAACCCCAAAAACCTACAGGGGACACACAAC
* *
9988377 CATGTCGCATGGCCATGTGTCACACACAGCTGAGACACACGCTCGTTTCTT
66 CATGTCGCATGGCCATGTGTCACACACAGCTGAGACACACGCCCGTGTCTT
**
9988428 AGGCCGTGTCCTAGGCCATGTAACTTTCGAATTGCAACCCCAAAAACCTACAGGGGACACACAGT
1 AGGCCGTGTCCTAGGCCATGTAACTTTCGAATTGCAACCCCAAAAACCTACAGGGGACACACAAC
* * *
9988493 CATGTCGCATGGCCATGTGTCACTCACGGCTGAGACACATGCCCGTGTCTT
66 CATGTCGCATGGCCATGTGTCACACACAGCTGAGACACACGCCCGTGTCTT
9988544 AGGCCGTGT
1 AGGCCGTGT
9988553 GGACAAGAAA
Statistics
Matches: 116, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
116 116 1.00
ACGTcount: A:0.25, C:0.30, G:0.24, T:0.21
Consensus pattern (116 bp):
AGGCCGTGTCCTAGGCCATGTAACTTTCGAATTGCAACCCCAAAAACCTACAGGGGACACACAAC
CATGTCGCATGGCCATGTGTCACACACAGCTGAGACACACGCCCGTGTCTT
Found at i:9992384 original size:147 final size:148
Alignment explanation
Indices: 9992135--9992405 Score: 373
Period size: 147 Copynumber: 1.8 Consensus size: 148
9992125 ATTTGGCCTC
* * * *
9992135 CTTTAACCACCGACAATTCATTTCACAAATCATAACAATTAATTATTTGTAGAACCATATAACCA
1 CTTTAACCACCGACAATTCATTTCACAAACCATAACAATTAATTATTTATAGAACCACAAAACCA
* ***
9992200 TGCAACCACTTTAGTTTGTCCTTAGCGTTCTCACTTTGTAGTGAGGTTGAAAGTGGTGGATCAGA
66 TGCAACCACTTTAGTTTGTCATTAGCGTTCTCACTTTGTAACAAGGTTGAAAGTGGTGGATCAGA
9992265 ACTTGCCTTTTCAATCTG
131 ACTTGCCTTTTCAATCTG
* * * * * *
9992283 CTTTAACCACCGATAATT-TTTTCATAAACCATAACTATTAATTGTTTATAGGACCACAAAACCA
1 CTTTAACCACCGACAATTCATTTCACAAACCATAACAATTAATTATTTATAGAACCACAAAACCA
* ** *
9992347 TGCAACCACTTTAGTTTGTCATTAGTGTTCTTGCTTTGTAACAAGGTTGAGAGTGGTGG
66 TGCAACCACTTTAGTTTGTCATTAGCGTTCTCACTTTGTAACAAGGTTGAAAGTGGTGG
9992406 TTCATACTTA
Statistics
Matches: 105, Mismatches: 18, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
147 88 0.84
148 17 0.16
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (148 bp):
CTTTAACCACCGACAATTCATTTCACAAACCATAACAATTAATTATTTATAGAACCACAAAACCA
TGCAACCACTTTAGTTTGTCATTAGCGTTCTCACTTTGTAACAAGGTTGAAAGTGGTGGATCAGA
ACTTGCCTTTTCAATCTG
Found at i:9999979 original size:42 final size:42
Alignment explanation
Indices: 9999904--10000115 Score: 178
Period size: 42 Copynumber: 4.9 Consensus size: 42
9999894 GCTCTTTGTT
* * * **
9999904 GTGTAGGTTAACTCGAACGAGTAACTAGACACTATATTTCTC
1 GTGTAGGTTAACCCGAAAGGGTAAAAAGACACTATATTTCTC
* *
9999946 ATGTAGGTTAACCCGAAAGGGTAAAAACG-CACTATATTTCTT
1 GTGTAGGTTAACCCGAAAGGGTAAAAA-GACACTATATTTCTC
** * *
9999988 GTGTAGGTTAACCTAAAAGGGTAATAAGACACTAAATTTCTC
1 GTGTAGGTTAACCCGAAAGGGTAAAAAGACACTATATTTCTC
* * * *
10000030 GTGTAGGTTAACTCGAAAGGGTAACCATGCACTATTGATATTTCTC
1 GTGTAGGTTAACCCGAAAGGGTAA-AAAG-AC-ACT-ATATTTCTC
* *
10000076 GTGTAGGTTTAACCC-AAATGAGTAACCAAG-CACTATATTT
1 GTGTAGG-TTAACCCGAAA-GGGTAA-AAAGACACTATATTT
10000116 TCACCATGTA
Statistics
Matches: 138, Mismatches: 24, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
41 1 0.01
42 88 0.64
43 9 0.07
44 4 0.03
45 3 0.02
46 18 0.13
47 15 0.11
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.30
Consensus pattern (42 bp):
GTGTAGGTTAACCCGAAAGGGTAAAAAGACACTATATTTCTC
Found at i:10000109 original size:47 final size:46
Alignment explanation
Indices: 10000023--10000111 Score: 126
Period size: 47 Copynumber: 1.9 Consensus size: 46
10000013 AAGACACTAA
* * *
10000023 ATTTCTCGTGTAGGTTAACTCGAAAGGGTAACCATGCACTATTGAT
1 ATTTCTCGTGTAGGTTAACTCCAAAGAGTAACCAAGCACTATTGAT
10000069 ATTTCTCGTGTAGGTTTAAC-CCAAATGAGTAACCAAGCACTAT
1 ATTTCTCGTGTAGG-TTAACTCCAAA-GAGTAACCAAGCACTAT
10000112 ATTTTCACCA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
46 18 0.47
47 20 0.53
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.31
Consensus pattern (46 bp):
ATTTCTCGTGTAGGTTAACTCCAAAGAGTAACCAAGCACTATTGAT
Found at i:10000991 original size:28 final size:28
Alignment explanation
Indices: 10000959--10001035 Score: 127
Period size: 30 Copynumber: 2.7 Consensus size: 28
10000949 TGGATACACG
10000959 GTAAATGGCACAGCTGTGTCACACACTA
1 GTAAATGGCACAGCTGTGTCACACACTA
*
10000987 GTAAATGGCACAACCGTGTGTCACACACTA
1 GTAAATGGCAC-AGC-TGTGTCACACACTA
10001017 GTAAATGGCACAGCTGTGT
1 GTAAATGGCACAGCTGTGT
10001036 GCTTTGTTTG
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
28 16 0.36
29 4 0.09
30 25 0.56
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.22
Consensus pattern (28 bp):
GTAAATGGCACAGCTGTGTCACACACTA
Found at i:10001081 original size:72 final size:72
Alignment explanation
Indices: 10000995--10001130 Score: 263
Period size: 72 Copynumber: 1.9 Consensus size: 72
10000985 TAGTAAATGG
*
10000995 CACAACCGTGTGTCACACACTAGTAAATGGCACAGCTGTGTGCTTTGTTTGTTTAGGTTGGTGTT
1 CACAACCGTGTGTCACACACTAGTAAATGGCACAGCTGTGTGCTTTATTTGTTTAGGTTGGTGTT
10001060 AAATCCA
66 AAATCCA
10001067 CACAACCGTGTGTCACACACTAGTAAATGGCACAGCTGTGTGCTTTATTTGTTTAGGTTGGTGT
1 CACAACCGTGTGTCACACACTAGTAAATGGCACAGCTGTGTGCTTTATTTGTTTAGGTTGGTGT
10001131 GATCTATCAT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
72 63 1.00
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.34
Consensus pattern (72 bp):
CACAACCGTGTGTCACACACTAGTAAATGGCACAGCTGTGTGCTTTATTTGTTTAGGTTGGTGTT
AAATCCA
Found at i:10006034 original size:57 final size:57
Alignment explanation
Indices: 10005925--10006041 Score: 139
Period size: 57 Copynumber: 2.1 Consensus size: 57
10005915 CCTTTTTCAT
** *
10005925 TTTTCATTTTCATTTTGGAGAAAACCACATTCATTTTCAAATAATTTCATTTCTCCA
1 TTTTCATTTTCATTTTGGAGAAAACCACAACCATTTCCAAATAATTTCATTTCTCCA
* ** *
10005982 TTTTCATTTTCATTTT-GAGAAAATCTTAACCATTTCCAAAT-GTTTCATATTTCTCCA
1 TTTTCATTTTCATTTTGGAGAAAACCACAACCATTTCCAAATAATTTC--ATTTCTCCA
10006039 TTT
1 TTT
10006042 CTCCATTTCA
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
55 4 0.08
56 19 0.37
57 28 0.55
ACGTcount: A:0.28, C:0.19, G:0.05, T:0.48
Consensus pattern (57 bp):
TTTTCATTTTCATTTTGGAGAAAACCACAACCATTTCCAAATAATTTCATTTCTCCA
Found at i:10006043 original size:8 final size:8
Alignment explanation
Indices: 10006030--10006059 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
10006020 AATGTTTCAT
10006030 ATTTCTCC
1 ATTTCTCC
10006038 ATTTCTCC
1 ATTTCTCC
*
10006046 ATTTCACC
1 ATTTCTCC
10006054 ATTTCT
1 ATTTCT
10006060 GTTAATTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.17, C:0.33, G:0.00, T:0.50
Consensus pattern (8 bp):
ATTTCTCC
Found at i:10007540 original size:13 final size:12
Alignment explanation
Indices: 10007514--10007539 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
10007504 TCTACTTGTA
10007514 TTGATTTTTTTT
1 TTGATTTTTTTT
10007526 TTGATTTTTTTT
1 TTGATTTTTTTT
10007538 TT
1 TT
10007540 TTGCTCTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.00, G:0.08, T:0.85
Consensus pattern (12 bp):
TTGATTTTTTTT
Found at i:10025034 original size:6 final size:6
Alignment explanation
Indices: 10025023--10025049 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
10025013 TATTATTTTA
10025023 ATTAAT ATTAAT ATTAAT ATTAAT ATT
1 ATTAAT ATTAAT ATTAAT ATTAAT ATT
10025050 TTTAATTAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
ATTAAT
Found at i:10026581 original size:9 final size:9
Alignment explanation
Indices: 10026552--10026596 Score: 51
Period size: 9 Copynumber: 5.3 Consensus size: 9
10026542 GGTTTTTGGA
10026552 TTTTAGGG-
1 TTTTAGGGT
10026560 -TTTAGGG-
1 TTTTAGGGT
10026567 TTTTAGGGT
1 TTTTAGGGT
*
10026576 TTTTAGGAT
1 TTTTAGGGT
*
10026585 TTTTAAGGT
1 TTTTAGGGT
10026594 TTT
1 TTT
10026597 GGAGAAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
7 7 0.22
8 7 0.22
9 18 0.56
ACGTcount: A:0.16, C:0.00, G:0.29, T:0.56
Consensus pattern (9 bp):
TTTTAGGGT
Found at i:10027962 original size:16 final size:16
Alignment explanation
Indices: 10027925--10027964 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
10027915 TTGATAAAAT
* *
10027925 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
10027941 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
10027957 TAAAATTA
1 TAAAATTA
10027965 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:10027997 original size:59 final size:66
Alignment explanation
Indices: 10027931--10028055 Score: 174
Period size: 66 Copynumber: 2.0 Consensus size: 66
10027921 AAATTAAAAC
*
10027931 TAATTGTTAT-TAAAAT-T-A-A-TTG-TTAGTAAAATTATCAAATTATTACTTG-TTAATTGTA
1 TAATTGTTATATAAAATCTAACATTTGATTAGTAAAATTATCAAATTATTAATTGATTAATTGTA
10027989 T
66 T
10027990 TAATTGTTATAATAAAATCTAACATTTGATTAGTAAAATTATCAAATTATTAATTGTATTAATTG
1 TAATTGTTAT-ATAAAATCTAACATTTGATTAGTAAAATTATCAAATTATTAATTG-ATTAATTG
10028055 T
64 T
10028056 TAATTATATT
Statistics
Matches: 56, Mismatches: 1, Indels: 9
0.85 0.02 0.14
Matches are distributed among these distances:
59 10 0.18
61 6 0.11
62 1 0.02
63 1 0.02
64 1 0.02
65 3 0.05
66 26 0.46
68 8 0.14
ACGTcount: A:0.41, C:0.04, G:0.08, T:0.47
Consensus pattern (66 bp):
TAATTGTTATATAAAATCTAACATTTGATTAGTAAAATTATCAAATTATTAATTGATTAATTGTA
T
Found at i:10028024 original size:66 final size:68
Alignment explanation
Indices: 10027953--10028098 Score: 188
Period size: 75 Copynumber: 2.1 Consensus size: 68
10027943 AAATTAATTG
* *
10027953 TTAGTAAAATTATCAAATTATTACTTG-TTAATTG-TATTAATTGTTATAATAAAATCTAACATT
1 TTAGTAAAATTATCAAATTATTAATTGATTAATTGTTATTAATTGTTATAACAAAATCTAACATT
10028016 TGA
66 TGA
*
10028019 TTAGTAAAATTATCAAATTATTAATTGTATTAATTGTTAATTATATTAATTGTTGTAACAAAATC
1 TTAGTAAAATTATCAAATTATTAATTG-ATTAATTG-----T-TATTAATTGTTATAACAAAATC
10028084 TAACATTTGA
59 TAACATTTGA
10028094 TTAGT
1 TTAGT
10028099 TTACATTTTT
Statistics
Matches: 68, Mismatches: 3, Indels: 9
0.85 0.04 0.11
Matches are distributed among these distances:
66 26 0.38
68 7 0.10
75 35 0.51
ACGTcount: A:0.40, C:0.05, G:0.08, T:0.46
Consensus pattern (68 bp):
TTAGTAAAATTATCAAATTATTAATTGATTAATTGTTATTAATTGTTATAACAAAATCTAACATT
TGA
Found at i:10028058 original size:16 final size:16
Alignment explanation
Indices: 10028034--10028072 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
10028024 AAAATTATCA
* *
10028034 AATTATTAATTGTATT
1 AATTGTTAATTATATT
10028050 AATTGTTAATTATATT
1 AATTGTTAATTATATT
10028066 AATTGTT
1 AATTGTT
10028073 GTAACAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (16 bp):
AATTGTTAATTATATT
Found at i:10028144 original size:19 final size:18
Alignment explanation
Indices: 10028103--10028147 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
10028093 ATTAGTTTAC
10028103 ATTTTTGTATTATCAAAT
1 ATTTTTGTATTATCAAAT
10028121 ATTTTTGTATTATCAAAT
1 ATTTTTGTATTATCAAAT
10028139 ATTTTTGTA
1 ATTTTTGTA
10028148 AACAAATAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.31, C:0.04, G:0.07, T:0.58
Consensus pattern (18 bp):
ATTTTTGTATTATCAAAT
Found at i:10028155 original size:16 final size:17
Alignment explanation
Indices: 10028103--10028155 Score: 63
Period size: 18 Copynumber: 3.1 Consensus size: 17
10028093 ATTAGTTTAC
*
10028103 ATTTTTGTATTATCAAAT
1 ATTTTTGTA-TAACAAAT
*
10028121 ATTTTTGTATTATCAAAT
1 ATTTTTGTA-TAACAAAT
10028139 ATTTTTGTA-AACAAAT
1 ATTTTTGTATAACAAAT
10028155 A
1 A
10028156 AGTTTACATT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
16 7 0.21
18 27 0.79
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.51
Consensus pattern (17 bp):
ATTTTTGTATAACAAAT
Found at i:10028351 original size:19 final size:20
Alignment explanation
Indices: 10028327--10028393 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
10028317 TCTGTCGGGG
10028327 AAATAAAATTGAAAAC-TAA
1 AAATAAAATTGAAAACATAA
10028346 AAATAAAATTGAAAACATAA
1 AAATAAAATTGAAAACATAA
*
10028366 AAATAAAATTGAAAACTTAA
1 AAATAAAATTGAAAACATAA
*
10028386 ACATAAAA
1 AAATAAAA
10028394 ATAAATATAT
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
19 16 0.36
20 29 0.64
ACGTcount: A:0.69, C:0.06, G:0.04, T:0.21
Consensus pattern (20 bp):
AAATAAAATTGAAAACATAA
Found at i:10028465 original size:20 final size:20
Alignment explanation
Indices: 10028437--10028477 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
10028427 AATGTCGGGG
*
10028437 AAATGAAATTGAAAACATAA
1 AAATAAAATTGAAAACATAA
*
10028457 AAATAAAATTGAAAACTTAA
1 AAATAAAATTGAAAACATAA
10028477 A
1 A
10028478 CTGTCAGGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.66, C:0.05, G:0.07, T:0.22
Consensus pattern (20 bp):
AAATAAAATTGAAAACATAA
Found at i:10028528 original size:50 final size:49
Alignment explanation
Indices: 10028425--10028528 Score: 142
Period size: 51 Copynumber: 2.1 Consensus size: 49
10028415 AAAAGAAGAG
10028425 TAAA-TGTCGGGGAAATGAAATTGAAAACATAAAAATAAAATTGAAAACT
1 TAAACTGTCGGGGAAATGAAATTGAAAACATAAAAATAAAATT-AAAACT
*
10028474 TAAACTGTCAGGGGAAATGAAATTGAAAAC-TAAAACTAAAAACTT-AAACT
1 TAAACTGTC-GGGGAAATGAAATTGAAAACATAAAAAT-AAAA-TTAAAACT
10028524 TAAAC
1 TAAAC
10028529 ATAAAAATAT
Statistics
Matches: 50, Mismatches: 1, Indels: 7
0.86 0.02 0.12
Matches are distributed among these distances:
49 4 0.08
50 20 0.40
51 24 0.48
52 2 0.04
ACGTcount: A:0.54, C:0.10, G:0.14, T:0.22
Consensus pattern (49 bp):
TAAACTGTCGGGGAAATGAAATTGAAAACATAAAAATAAAATTAAAACT
Found at i:10028575 original size:16 final size:16
Alignment explanation
Indices: 10028554--10028586 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
10028544 TATATTTTTT
10028554 AAACATAAAAAACTTA
1 AAACATAAAAAACTTA
10028570 AAACATAAAAAACTTA
1 AAACATAAAAAACTTA
10028586 A
1 A
10028587 TATATATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.70, C:0.12, G:0.00, T:0.18
Consensus pattern (16 bp):
AAACATAAAAAACTTA
Found at i:10030794 original size:31 final size:29
Alignment explanation
Indices: 10030721--10030801 Score: 90
Period size: 29 Copynumber: 2.7 Consensus size: 29
10030711 AAATTGAATC
*
10030721 AAATCAAAATTTCATGTATAAAACTGCACA
1 AAATCAAAA-TTCATGTATAAAACTACACA
* * *
10030751 AAATCAATATTCATGTATGACACTACACA
1 AAATCAAAATTCATGTATAAAACTACACA
*
10030780 TTAGATCAAAATTCATGTATAA
1 --AAATCAAAATTCATGTATAA
10030802 TTTTATATTT
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 17 0.40
30 8 0.19
31 17 0.40
ACGTcount: A:0.47, C:0.16, G:0.07, T:0.30
Consensus pattern (29 bp):
AAATCAAAATTCATGTATAAAACTACACA
Found at i:10031380 original size:18 final size:18
Alignment explanation
Indices: 10031346--10031379 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10031336 GTGTTTTAGT
10031346 TAAAATATGCATATTTTG
1 TAAAATATGCATATTTTG
*
10031364 TAAAATTTG-ATATTTT
1 TAAAATATGCATATTTT
10031380 TATATATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.38, C:0.03, G:0.09, T:0.50
Consensus pattern (18 bp):
TAAAATATGCATATTTTG
Found at i:10032675 original size:16 final size:17
Alignment explanation
Indices: 10032654--10032685 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
10032644 TTAGGGTTTT
10032654 GGTTTAGGGT-TTTTAG
1 GGTTTAGGGTATTTTAG
10032670 GGTTTAGGGTATTTTA
1 GGTTTAGGGTATTTTA
10032686 AAAGTGTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.16, C:0.00, G:0.34, T:0.50
Consensus pattern (17 bp):
GGTTTAGGGTATTTTAG
Found at i:10034443 original size:25 final size:26
Alignment explanation
Indices: 10034415--10034469 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
10034405 AGTTAAGTGG
**
10034415 TTTTTAATTATTTTTG-TTTAATGAT
1 TTTTTAATTAAATTTGATTTAATGAT
**
10034440 TTTTTTGTTAAATTTGATTTAATGAT
1 TTTTTAATTAAATTTGATTTAATGAT
10034466 TTTT
1 TTTT
10034470 GTTAATTGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 12 0.48
26 13 0.52
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.67
Consensus pattern (26 bp):
TTTTTAATTAAATTTGATTTAATGAT
Found at i:10034473 original size:24 final size:24
Alignment explanation
Indices: 10034427--10034474 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
10034417 TTTAATTATT
10034427 TTTGTTTAATGATTTTTTTGTTAAA
1 TTTGTTTAATGA-TTTTTTGTTAAA
10034452 TTTGATTTAATGA-TTTTTGTTAA
1 TTTG-TTTAATGATTTTTTGTTAA
10034475 TTGAACGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 10 0.45
25 4 0.18
26 8 0.36
ACGTcount: A:0.25, C:0.00, G:0.12, T:0.62
Consensus pattern (24 bp):
TTTGTTTAATGATTTTTTGTTAAA
Found at i:10035566 original size:25 final size:25
Alignment explanation
Indices: 10035512--10035566 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
10035502 AAACATTAAA
*
10035512 TTTAATTTAATATTAAGATAATCAC
1 TTTAATTTAATATTAAGAAAATCAC
*
10035537 TTTAATATTAA-ATTAATAAAAT-AC
1 TTTAAT-TTAATATTAAGAAAATCAC
10035561 TATTAA
1 T-TTAA
10035567 GATATGTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 3 0.12
25 19 0.73
26 4 0.15
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (25 bp):
TTTAATTTAATATTAAGAAAATCAC
Found at i:10037228 original size:15 final size:15
Alignment explanation
Indices: 10037204--10037235 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
10037194 TATGCATGCA
*
10037204 AAATATAAAAGACAT
1 AAATACAAAAGACAT
10037219 AAATACAAAAGACAT
1 AAATACAAAAGACAT
10037234 AA
1 AA
10037236 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:10037594 original size:30 final size:30
Alignment explanation
Indices: 10037558--10037619 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
10037548 ATTTATTTTA
10037558 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
*
10037588 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
10037618 TT
1 TT
10037620 ACTTATTAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.24, C:0.03, G:0.15, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGCAT
Found at i:10045969 original size:43 final size:42
Alignment explanation
Indices: 10045917--10046072 Score: 118
Period size: 43 Copynumber: 3.7 Consensus size: 42
10045907 TTGCTTATGT
* *
10045917 TTATTTGATGATGCACTATGCATGCCAGTATAATTGCTTCGA
1 TTATCTGATGATGCACTATGTATGCCAGTATAATTGCTTCGA
* * * *
10045959 TTCATCTGATGATGGATCT-TGTGTGCCATTATAATTGTTTCGA
1 TT-ATCTGATGATGCA-CTATGTATGCCAGTATAATTGCTTCGA
* * * * ** * * *
10046002 GATACCCGATGATGCACTATGTGTGCCAGTATCTTTCCTTTGG
1 -TTATCTGATGATGCACTATGTATGCCAGTATAATTGCTTCGA
*
10046045 TATATTTGATGATGCACTATG-ATGCCAG
1 T-TATCTGATGATGCACTATGTATGCCAG
10046073 ATTGAGATAC
Statistics
Matches: 87, Mismatches: 22, Indels: 10
0.73 0.18 0.08
Matches are distributed among these distances:
42 10 0.11
43 74 0.85
44 3 0.03
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.38
Consensus pattern (42 bp):
TTATCTGATGATGCACTATGTATGCCAGTATAATTGCTTCGA
Found at i:10052182 original size:8 final size:8
Alignment explanation
Indices: 10052169--10052208 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
10052159 CCCGGATTGC
10052169 ATGTTTGT
1 ATGTTTGT
10052177 ATGTTTGT
1 ATGTTTGT
*
10052185 ATGGTT-T
1 ATGTTTGT
10052192 -TGTTTGT
1 ATGTTTGT
10052199 ATGTTTGT
1 ATGTTTGT
10052207 AT
1 AT
10052209 TGCTCATTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 4 0.14
7 2 0.07
8 22 0.79
ACGTcount: A:0.12, C:0.00, G:0.25, T:0.62
Consensus pattern (8 bp):
ATGTTTGT
Found at i:10054712 original size:11 final size:11
Alignment explanation
Indices: 10054696--10054722 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
10054686 TAGAAATTAG
10054696 TTTGTGAAACT
1 TTTGTGAAACT
10054707 TTTGTGAAACT
1 TTTGTGAAACT
10054718 TTTGT
1 TTTGT
10054723 ATTGATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:10056258 original size:91 final size:91
Alignment explanation
Indices: 10056132--10056339 Score: 326
Period size: 91 Copynumber: 2.3 Consensus size: 91
10056122 TTGATTTTAG
* *
10056132 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * *
10056197 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
*
10056224 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
10056289 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
* * *
10056315 CAAATTCATATAATATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
10056340 GTTATAATTA
Statistics
Matches: 107, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
91 91 0.85
92 16 0.15
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:10056308 original size:26 final size:28
Alignment explanation
Indices: 10056254--10056314 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
10056244 TATTATCAAG
* *
10056254 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
10056282 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
10056308 AATTATA
1 AATTATA
10056315 CAAATTCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:10056314 original size:44 final size:43
Alignment explanation
Indices: 10056172--10056358 Score: 121
Period size: 47 Copynumber: 4.1 Consensus size: 43
10056162 GAATTTTATG
* *
10056172 AAATTATATATCATTATTAAATTATATTTAATATTAATTATTTT
1 AAATTATATATTATTATTAAATTATA-TTAATAATAATTATTTT
* ** * *
10056216 AAATTGTATAAATTCATATAAGAAAATT-TATT-ATCAAGAATT-TTATG
1 AAA-T-TATATATT-AT-T-ATTAAATTATATTAAT-AATAATTATT-TT
10056263 AAATTATATATTATTATTAAATTATATGTAATAATAATTATTTT
1 AAATTATATATTATTATTAAATTATAT-TAATAATAATTATTTT
* * * *
10056307 AAATTATACAAATTCATATAATATAATT-TATTAGTTATAATTATTTT
1 AAATTAT--ATATT-AT-TATTA-AATTATATTAATAATAATTATTTT
10056354 AAATT
1 AAATT
10056359 TTATTAAATC
Statistics
Matches: 111, Mismatches: 16, Indels: 29
0.71 0.10 0.19
Matches are distributed among these distances:
42 6 0.05
43 4 0.04
44 20 0.18
45 12 0.11
46 15 0.14
47 34 0.31
48 10 0.09
49 10 0.09
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.49
Consensus pattern (43 bp):
AAATTATATATTATTATTAAATTATATTAATAATAATTATTTT
Found at i:10056432 original size:59 final size:57
Alignment explanation
Indices: 10056366--10056674 Score: 184
Period size: 66 Copynumber: 5.2 Consensus size: 57
10056356 ATTTTATTAA
10056366 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATCTTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTAT-TTTTATAGT
* * ** * *
10056425 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATT-TTATTA-A--
1 ATCATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATTTA-AATTATTTTTATAGT
* * * *
10056486 ATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATCTTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTAT-TTTTATAGT
* * ** * *
10056545 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATT-TTATTA-A--
1 ATCATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATTTA-AATTATTTTTATAGT
* * * *
10056606 ATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTAT-TTTTATAGT
10056665 ATCATATATT
1 ATCATATATT
10056675 ATGATTTGAG
Statistics
Matches: 185, Mismatches: 37, Indels: 56
0.67 0.13 0.20
Matches are distributed among these distances:
54 28 0.15
55 14 0.08
56 10 0.05
57 6 0.03
59 30 0.16
60 16 0.09
61 20 0.11
63 7 0.04
64 10 0.05
65 13 0.07
66 31 0.17
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (57 bp):
ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTATTTTTATAGT
Found at i:10056479 original size:120 final size:120
Alignment explanation
Indices: 10056355--10056767 Score: 765
Period size: 120 Copynumber: 3.4 Consensus size: 120
10056345 AATTATTTTA
* * * *
10056355 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT-AATTTATCTTT
10056419 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
10056475 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATCTTTT
10056540 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
10056595 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATCTTTT
10056660 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
10056715 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
10056768 TAAATATGAT
Statistics
Matches: 287, Mismatches: 5, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
120 285 0.99
121 2 0.01
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATCTTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:10056495 original size:61 final size:61
Alignment explanation
Indices: 10056428--10056735 Score: 257
Period size: 61 Copynumber: 5.1 Consensus size: 61
10056418 TTATAGTATC
10056428 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * ** *
10056489 ATATATT-TTAATT-A-T-AATAT-ATTTAATAATAATTATGTTAATTTA-TCTTTTA-TAGTAT
1 ATATATTATGATTTGAGTAAAT-TCATATAAGAAT-ATTA-ATT-ATTAAGAATTTTATTA-AAT
*
10056547 C
61 T
10056548 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * * *
10056609 ATATATT-TTAATT-A-T-AATAT-ATTTAATAATAATTATGTTAATTTA-TATTTTA-TAGTAT
1 ATATATTATGATTTGAGTAAAT-TCATATAAGAAT-ATTA-ATT-ATTAAGAATTTTATTA-AAT
*
10056667 C
61 T
10056668 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
10056729 ATATATT
1 ATATATT
10056736 TTAATTATAA
Statistics
Matches: 185, Mismatches: 38, Indels: 48
0.68 0.14 0.18
Matches are distributed among these distances:
57 22 0.12
58 16 0.09
59 35 0.19
60 32 0.17
61 42 0.23
62 16 0.09
63 22 0.12
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:10056515 original size:15 final size:15
Alignment explanation
Indices: 10056480--10056531 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
10056470 TTAAGAATTT
*
10056480 TATTAAATTAT-ATA
1 TATTTAATTATAATA
10056494 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
10056508 TATTTAATAATAAT-
1 TATTTAATTATAATA
10056522 TATGTTAATT
1 TAT-TTAATT
10056532 TATCTTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:10056635 original size:15 final size:15
Alignment explanation
Indices: 10056600--10056651 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
10056590 TTAAGAATTT
*
10056600 TATTAAATTAT-ATA
1 TATTTAATTATAATA
10056614 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
10056628 TATTTAATAATAAT-
1 TATTTAATTATAATA
10056642 TATGTTAATT
1 TAT-TTAATT
10056652 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:10056750 original size:16 final size:16
Alignment explanation
Indices: 10056729--10056770 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
10056719 TTATTAAATT
*
10056729 ATATATTTTAATTATA
1 ATATATTTTAATAATA
10056745 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
10056760 AT-TATGTTTAA
1 ATATAT-TTTAA
10056771 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:10056755 original size:15 final size:15
Alignment explanation
Indices: 10056720--10056761 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
10056710 TTAAGAATTT
*
10056720 TATTAAATTAT-ATA
1 TATTTAATTATAATA
10056734 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
10056748 TATTTAATAATAAT
1 TATTTAATTATAAT
10056762 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:10056996 original size:45 final size:43
Alignment explanation
Indices: 10056896--10057005 Score: 122
Period size: 45 Copynumber: 2.6 Consensus size: 43
10056886 TTTTCCATTA
10056896 TGCTATTACACCTCTATTC----CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCATTACATTCAACCAAACACAAGAT
* * *
10056935 TACTATTACGCCTCTATTCCATTACATTCAACCAAACA-ATTGATT
1 TGCTATTACACCTCTATT-CATTACATTCAACCAAACACA-AGA-T
10056980 TGCTATTACACCTCTATTTCATTACA
1 TGCTATTACACCTCTA-TTCATTACA
10057006 CCTCTATTAC
Statistics
Matches: 58, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
43 1 0.02
44 16 0.28
45 22 0.38
46 2 0.03
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.35
Consensus pattern (43 bp):
TGCTATTACACCTCTATTCATTACATTCAACCAAACACAAGAT
Found at i:10057005 original size:16 final size:16
Alignment explanation
Indices: 10056984--10057029 Score: 74
Period size: 16 Copynumber: 2.9 Consensus size: 16
10056974 TTGATTTGCT
*
10056984 ATTACACCTCTATTTC
1 ATTACACCTCTATTAC
10057000 ATTACACCTCTATTAC
1 ATTACACCTCTATTAC
*
10057016 ATTACGCCTCTATT
1 ATTACACCTCTATT
10057030 CTATTAAAGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.26, C:0.30, G:0.02, T:0.41
Consensus pattern (16 bp):
ATTACACCTCTATTAC
Found at i:10057035 original size:16 final size:16
Alignment explanation
Indices: 10056982--10057035 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
10056972 AATTGATTTG
10056982 CTATTACACCTCTATT
1 CTATTACACCTCTATT
10056998 -TCATTACACCTCTATT
1 CT-ATTACACCTCTATT
*
10057014 AC-ATTACGCCTCTATT
1 -CTATTACACCTCTATT
10057030 CTATTA
1 CTATTA
10057036 AAGCGAACCA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
15 2 0.06
16 31 0.94
ACGTcount: A:0.26, C:0.30, G:0.02, T:0.43
Consensus pattern (16 bp):
CTATTACACCTCTATT
Found at i:10057412 original size:18 final size:18
Alignment explanation
Indices: 10057390--10057434 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
10057380 CTTTCATTTT
*
10057390 TATTTATAAAATT-TTTA
1 TATTTATAAAATTATATA
10057407 TGATTTATAAAATTATATA
1 T-ATTTATAAAATTATATA
10057426 TATTTATAA
1 TATTTATAA
10057435 TTTTTAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 1 0.04
18 20 0.80
19 4 0.16
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (18 bp):
TATTTATAAAATTATATA
Found at i:10057444 original size:26 final size:27
Alignment explanation
Indices: 10057413--10057466 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
10057403 TTTATGATTT
10057413 ATAAAATTATATATATTTATA-ATTTTTA
1 ATAAAATTATATAT-TTT-TAGATTTTTA
*
10057441 AAAAAATTATATATTTTTAGATTTTT
1 ATAAAATTATATATTTTTAGATTTTT
10057467 TTAATTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 2 0.08
27 9 0.38
28 13 0.54
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (27 bp):
ATAAAATTATATATTTTTAGATTTTTA
Found at i:10059413 original size:37 final size:37
Alignment explanation
Indices: 10059372--10059443 Score: 135
Period size: 37 Copynumber: 1.9 Consensus size: 37
10059362 CTTATTTTTT
10059372 CCATTAGATTAAAATTCACTAACTATTTAATTAATCA
1 CCATTAGATTAAAATTCACTAACTATTTAATTAATCA
*
10059409 CCATTAGATTAGAATTCACTAACTATTTAATTAAT
1 CCATTAGATTAAAATTCACTAACTATTTAATTAAT
10059444 TATGAGTTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.42, C:0.15, G:0.04, T:0.39
Consensus pattern (37 bp):
CCATTAGATTAAAATTCACTAACTATTTAATTAATCA
Found at i:10061954 original size:3 final size:3
Alignment explanation
Indices: 10061946--10061998 Score: 54
Period size: 3 Copynumber: 17.7 Consensus size: 3
10061936 TGAATATAGA
* * * *
10061946 AAT AAT AAT AGT AAT AAT GAC AAT ACAT AAT -AT AAT AAT AAT GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT
10061991 AAT AAT AA
1 AAT AAT AA
10061999 CAAAAAAAAT
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
2 2 0.05
3 35 0.88
4 3 0.08
ACGTcount: A:0.60, C:0.04, G:0.06, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:10070132 original size:35 final size:37
Alignment explanation
Indices: 10070084--10070160 Score: 115
Period size: 35 Copynumber: 2.2 Consensus size: 37
10070074 ATTTGTTAGA
10070084 TATTGATTATGTTTTAACCTTATTGGATATT-AAATT
1 TATTGATTATGTTTTAACCTTATTGGATATTGAAATT
* *
10070120 TATT-ATTATGTTTTAAGCTTGTTGGATATTGAAA-T
1 TATTGATTATGTTTTAACCTTATTGGATATTGAAATT
10070155 TATTGA
1 TATTGA
10070161 CAATGACAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
35 29 0.78
36 8 0.22
ACGTcount: A:0.30, C:0.04, G:0.14, T:0.52
Consensus pattern (37 bp):
TATTGATTATGTTTTAACCTTATTGGATATTGAAATT
Found at i:10071448 original size:32 final size:32
Alignment explanation
Indices: 10071412--10071488 Score: 82
Period size: 33 Copynumber: 2.4 Consensus size: 32
10071402 AACTTTTCCG
** ** *
10071412 GAAAATATTTTCAGGGAATCTGTCAAACAGCA
1 GAAAATATTTTCACAGAATCAATCAAACACCA
* *
10071444 GAAAACATTTTACACAGATTCAATCAAACACCA
1 GAAAATATTTT-CACAGAATCAATCAAACACCA
10071477 GAAAATATTTTC
1 GAAAATATTTTC
10071489 CAGTAAATCA
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
32 11 0.31
33 25 0.69
ACGTcount: A:0.44, C:0.18, G:0.12, T:0.26
Consensus pattern (32 bp):
GAAAATATTTTCACAGAATCAATCAAACACCA
Found at i:10075385 original size:182 final size:182
Alignment explanation
Indices: 10075053--10075389 Score: 469
Period size: 182 Copynumber: 1.9 Consensus size: 182
10075043 ACCTCTACTT
* * * *
10075053 GAGGGAGCTGATTGGAGTGGATGAGAGACGAGATGAACTTTACTACTTCCAGCAAGTATCTACAA
1 GAGGGAGCTGATTGGAGCGAATGAGAGACGAGATGAACTTTACTACCTCCAGCAAGTATCGACAA
* * * * * * *
10075118 TCAAAGCGGTTTCTATTGAAGCTTTATCCTCTTTGGAACTTTGGTGTAGAAGATTGGGTCAACCT
66 TCAAAGCGATTTCTATTAAAGCTTCATCCTCTTTGGAACTTTAGTATAAAAGATAGGGTCAACCT
*
10075183 TCCGAGAAAGTGCCGAAGTTACTTCCCTATGTGCTATTTAGGACCTCCAATC
131 TCCGAGAAACTGCCGAAGTTACTTCCCTATGTGCTATTTAGGACCTCCAATC
* * * *
10075235 GAGGGAGCTGATTGGAGCGAATGAGAGATGGGATGAACTTTACTACCTCCAGCAAGTTTCGACAG
1 GAGGGAGCTGATTGGAGCGAATGAGAGACGAGATGAACTTTACTACCTCCAGCAAGTATCGACAA
* * *
10075300 TCAAAGCGATTTTTATTAAAGCTTCATCCTCTTTTGAACTTTAGTATAAAAGATAGGGTCACCCT
66 TCAAAGCGATTTCTATTAAAGCTTCATCCTCTTTGGAACTTTAGTATAAAAGATAGGGTCAACCT
* *
10075365 TTCGAGAAACTAG-TGAAGTTACTTC
131 TCCGAGAAACT-GCCGAAGTTACTTC
10075390 ATTATGTTAG
Statistics
Matches: 133, Mismatches: 21, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
182 132 0.99
183 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.30
Consensus pattern (182 bp):
GAGGGAGCTGATTGGAGCGAATGAGAGACGAGATGAACTTTACTACCTCCAGCAAGTATCGACAA
TCAAAGCGATTTCTATTAAAGCTTCATCCTCTTTGGAACTTTAGTATAAAAGATAGGGTCAACCT
TCCGAGAAACTGCCGAAGTTACTTCCCTATGTGCTATTTAGGACCTCCAATC
Found at i:10081593 original size:12 final size:12
Alignment explanation
Indices: 10081576--10081601 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
10081566 TTGTATATCT
10081576 TTTAGGAATATA
1 TTTAGGAATATA
10081588 TTTAGGAATATA
1 TTTAGGAATATA
10081600 TT
1 TT
10081602 ATATGTCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (12 bp):
TTTAGGAATATA
Found at i:10083134 original size:26 final size:26
Alignment explanation
Indices: 10083074--10083124 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
10083064 TTGAGTTACT
*
10083074 AAATTCTCTTTGAGTTTTTCTTTTCAAG
1 AAATTTTC-TTGAGTTTTTCTTTT-AAG
10083102 AAATTTTCTTGAG-TTTTCTTTTA
1 AAATTTTCTTGAGTTTTTCTTTTA
10083125 GAAGAGTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 1 0.05
26 9 0.41
27 5 0.23
28 7 0.32
ACGTcount: A:0.22, C:0.12, G:0.10, T:0.57
Consensus pattern (26 bp):
AAATTTTCTTGAGTTTTTCTTTTAAG
Found at i:10084555 original size:24 final size:24
Alignment explanation
Indices: 10084528--10084580 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
10084518 ACTTGTAATT
*
10084528 TAAATA-AGTTATTCTAATAAATAC
1 TAAATATA-TTATACTAATAAATAC
10084552 TAAATATATTATACTAATAAATAC
1 TAAATATATTATACTAATAAATAC
10084576 TAAAT
1 TAAAT
10084581 CTTCTAGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 26 0.96
25 1 0.04
ACGTcount: A:0.53, C:0.08, G:0.02, T:0.38
Consensus pattern (24 bp):
TAAATATATTATACTAATAAATAC
Found at i:10085530 original size:44 final size:44
Alignment explanation
Indices: 10085479--10085563 Score: 143
Period size: 44 Copynumber: 1.9 Consensus size: 44
10085469 GTAAGTCAAA
10085479 TAATATTAAAATAACTTACACTAATAAGAGTTTAAGTGAAAATT
1 TAATATTAAAATAACTTACACTAATAAGAGTTTAAGTGAAAATT
* * *
10085523 TAATATTAAAATAACTTATACTAATTAGAGTTTGAGTGAAA
1 TAATATTAAAATAACTTACACTAATAAGAGTTTAAGTGAAA
10085564 CTAAAAACAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.48, C:0.06, G:0.11, T:0.35
Consensus pattern (44 bp):
TAATATTAAAATAACTTACACTAATAAGAGTTTAAGTGAAAATT
Found at i:10092239 original size:23 final size:23
Alignment explanation
Indices: 10092211--10092265 Score: 56
Period size: 25 Copynumber: 2.2 Consensus size: 23
10092201 ATGTATTATT
*
10092211 ATATATACATACGTATAGTAAAAAA
1 ATATAT-CATACATATA-TAAAAAA
*
10092236 ATATTATTCATACATATATAAAAAT
1 ATA-TA-TCATACATATATAAAAAA
10092261 ATATA
1 ATATA
10092266 AATTAACTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 2 0.08
25 12 0.46
26 11 0.42
27 1 0.04
ACGTcount: A:0.55, C:0.07, G:0.04, T:0.35
Consensus pattern (23 bp):
ATATATCATACATATATAAAAAA
Found at i:10094022 original size:44 final size:43
Alignment explanation
Indices: 10093974--10094092 Score: 123
Period size: 44 Copynumber: 2.7 Consensus size: 43
10093964 CATTTTGATC
* *
10093974 CGCTCCACTGCAACTTCAGGGAGATAGGATCTATTA-CTTTAATT
1 CGCTCCACTGCAACTTCAGGGAGATAGGAT-TATCAGCTTCAA-T
* * * **
10094018 CGCTCCACTACAACTTTAGGGAGAAAATATTATCAGCTTCAAT
1 CGCTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCAAT
* *
10094061 CTGCTCCATTGCAACCTCAGGGAGATAGGATT
1 C-GCTCCACTGCAACTTCAGGGAGATAGGATT
10094093 TGCCATCTTC
Statistics
Matches: 59, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
43 6 0.10
44 53 0.90
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (43 bp):
CGCTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCAAT
Found at i:10097113 original size:26 final size:26
Alignment explanation
Indices: 10097084--10097156 Score: 87
Period size: 26 Copynumber: 2.8 Consensus size: 26
10097074 CCCGATATAT
10097084 GGCTCTTCGTGAGCTTCCTGATTAAA
1 GGCTCTTCGTGAGCTTCCTGATTAAA
* * *
10097110 GGCTCTTTGTTAGCTTCCTGATTAAT
1 GGCTCTTCGTGAGCTTCCTGATTAAA
*
10097136 GACTC-TC-TGAAGCTTCCTGAT
1 GGCTCTTCGTG-AGCTTCCTGAT
10097157 ATGGATCGCT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
24 1 0.03
25 12 0.30
26 27 0.68
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (26 bp):
GGCTCTTCGTGAGCTTCCTGATTAAA
Found at i:10097220 original size:25 final size:25
Alignment explanation
Indices: 10097082--10097222 Score: 78
Period size: 26 Copynumber: 5.6 Consensus size: 25
10097072 GTCCCGATAT
10097082 ATGGCTCTTCGTGAGCTTCCTGATTA
1 ATGGCTCTTCG-GAGCTTCCTGATTA
* * *
10097108 AAGGCTCTTTGTTAGCTTCCTGATTA
1 ATGGCTCTTCG-GAGCTTCCTGATTA
* *
10097134 ATGACTC-TCTGAAGCTTCCTGA-T-
1 ATGGCTCTTC-GGAGCTTCCTGATTA
* * * *
10097157 ATGGATCGCTT--GA-ATTTCTGAATA
1 ATGG--CTCTTCGGAGCTTCCTGATTA
* * *
10097181 TATGGATATTTGGAGCTTCCTGATTA
1 -ATGGCTCTTCGGAGCTTCCTGATTA
10097207 ATGGCTCTTCGGAGCT
1 ATGGCTCTTCGGAGCT
10097223 ACCCGTTATT
Statistics
Matches: 84, Mismatches: 21, Indels: 21
0.67 0.17 0.17
Matches are distributed among these distances:
22 6 0.07
23 7 0.08
24 1 0.01
25 32 0.38
26 38 0.45
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (25 bp):
ATGGCTCTTCGGAGCTTCCTGATTA
Found at i:10097811 original size:16 final size:16
Alignment explanation
Indices: 10097790--10097826 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
10097780 AGTATTTCGA
10097790 AAGCTCGTTGGGTTAG
1 AAGCTCGTTGGGTTAG
*
10097806 AAGCTCGTTGGGTTGG
1 AAGCTCGTTGGGTTAG
10097822 AAGCT
1 AAGCT
10097827 TGGCGGAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.19, C:0.14, G:0.38, T:0.30
Consensus pattern (16 bp):
AAGCTCGTTGGGTTAG
Done.