Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 36 of 207
Found at i:10392312 original size:17 final size:18
Alignment explanation
Indices: 10392271--10392312 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
10392261 GCCCGTATGG
*
10392271 CATGCTCGTGTAGGCCCA
1 CATGCCCGTGTAGGCCCA
* *
10392289 CACGCCCGTGT-GGCCTA
1 CATGCCCGTGTAGGCCCA
10392306 CATGCCC
1 CATGCCC
10392313 AATATGTTCT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.14, C:0.40, G:0.26, T:0.19
Consensus pattern (18 bp):
CATGCCCGTGTAGGCCCA
Found at i:10399909 original size:77 final size:77
Alignment explanation
Indices: 10399772--10399917 Score: 186
Period size: 77 Copynumber: 1.9 Consensus size: 77
10399762 TTGTAAACAA
* * * * ** *
10399772 AAATCAATTGAACAATTCTATTTCAGGGTTTTATTCCTGTCGTTTAATAGGATTTGTTCGATTTT
1 AAATCAATTGAACAATTCTATTTCAGGATTTTATTCCTGTCATTCAATAGAATTCATTCGATTTC
10399837 TGTTTCAAACTG
66 TGTTTCAAACTG
* * *
10399849 AAATCAATTGAATAATTCTGTTTTAGGATTCTT-TTCCTGTCATTCAATAGAATTCATTCGATTT
1 AAATCAATTGAACAATTCTATTTCAGGATT-TTATTCCTGTCATTCAATAGAATTCATTCGATTT
10399913 CTGTT
65 CTGTT
10399918 GTTAACAGTG
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
77 56 0.97
78 2 0.03
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.46
Consensus pattern (77 bp):
AAATCAATTGAACAATTCTATTTCAGGATTTTATTCCTGTCATTCAATAGAATTCATTCGATTTC
TGTTTCAAACTG
Found at i:10401901 original size:21 final size:21
Alignment explanation
Indices: 10401875--10401926 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
10401865 AGTGATCGTG
10401875 GTGGTGAATATGTTGAACCAT
1 GTGGTGAATATGTTGAACCAT
10401896 GTGGTGAATATGTTGAACCAT
1 GTGGTGAATATGTTGAACCAT
*
10401917 TTGGTGAATA
1 GTGGTGAATA
10401927 CTGTGCACAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.29, C:0.08, G:0.29, T:0.35
Consensus pattern (21 bp):
GTGGTGAATATGTTGAACCAT
Found at i:10416882 original size:15 final size:17
Alignment explanation
Indices: 10416850--10416886 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
10416840 TATATTATTT
10416850 AATATAAAAATAAATAA
1 AATATAAAAATAAATAA
*
10416867 AATA-AAAAAT-ATTAA
1 AATATAAAAATAAATAA
10416882 AATAT
1 AATAT
10416887 TTTATTATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 8 0.44
16 6 0.33
17 4 0.22
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (17 bp):
AATATAAAAATAAATAA
Found at i:10416916 original size:23 final size:24
Alignment explanation
Indices: 10416873--10416917 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
10416863 ATAAAATAAA
*
10416873 AAATATTAAAATATTTTATTATCT
1 AAATATTAAAATATTTGATTATCT
10416897 AAAT-TTAAAAT-TTATGATTAT
1 AAATATTAAAATATT-TGATTAT
10416918 TATTATCTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 2 0.11
23 13 0.68
24 4 0.21
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (24 bp):
AAATATTAAAATATTTGATTATCT
Found at i:10431206 original size:9 final size:8
Alignment explanation
Indices: 10431188--10431276 Score: 56
Period size: 8 Copynumber: 10.8 Consensus size: 8
10431178 TTTTAGAAAC
10431188 TTTTATAT
1 TTTTATAT
10431196 TTTTCATAT
1 TTTT-ATAT
*
10431205 TTTTAAAT
1 TTTTATAT
* *
10431213 TATATACAT
1 T-TTTATAT
10431222 TTTTA-AT
1 TTTTATAT
* *
10431229 TTTAAGGAGT
1 TTTTA-TA-T
10431239 TTTTA-AT
1 TTTTATAT
* *
10431246 TTTCACAT
1 TTTTATAT
10431254 TTTTATGAT
1 TTTTAT-AT
10431263 TTTTATAT
1 TTTTATAT
10431271 TTTTAT
1 TTTTAT
10431277 TAGAAATAAA
Statistics
Matches: 65, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
7 11 0.17
8 26 0.40
9 23 0.35
10 5 0.08
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.63
Consensus pattern (8 bp):
TTTTATAT
Found at i:10431208 original size:17 final size:16
Alignment explanation
Indices: 10431188--10431276 Score: 56
Period size: 17 Copynumber: 5.4 Consensus size: 16
10431178 TTTTAGAAAC
*
10431188 TTTTATATTTTTCATAT
1 TTTTATATTTTT-ACAT
* *
10431205 TTTTAAATTATATACAT
1 TTTTATATT-TTTACAT
* *
10431222 TTTTA-ATTTTAAGGAGT
1 TTTTATATTTTTA-CA-T
*
10431239 TTTTA-ATTTTCACAT
1 TTTTATATTTTTACAT
*
10431254 TTTTATGATTTTTATAT
1 TTTTAT-ATTTTTACAT
10431271 TTTTAT
1 TTTTAT
10431277 TAGAAATAAA
Statistics
Matches: 57, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
15 8 0.14
16 5 0.09
17 42 0.74
18 2 0.04
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.63
Consensus pattern (16 bp):
TTTTATATTTTTACAT
Found at i:10432309 original size:14 final size:14
Alignment explanation
Indices: 10432290--10432319 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
10432280 GGAAATGAAG
10432290 TTATTTATATATAT
1 TTATTTATATATAT
*
10432304 TTATTTATTTATAT
1 TTATTTATATATAT
10432318 TT
1 TT
10432320 TTAGAACAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TTATTTATATATAT
Found at i:10436395 original size:45 final size:45
Alignment explanation
Indices: 10436342--10436499 Score: 171
Period size: 45 Copynumber: 3.5 Consensus size: 45
10436332 CTTCAAAATT
*
10436342 AGTATCATTTTCAGATGCAGGATCAATCCTCTTTTCTTCCAAAAG
1 AGTATCATTTTCAGATGCAAGATCAATCCTCTTTTCTTCCAAAAG
* * * *
10436387 AGTATCATTATT-TGATGTAAGATCAATTCTCCTTTCTTCCAAAAG
1 AGTATCATT-TTCAGATGCAAGATCAATCCTCTTTTCTTCCAAAAG
* *
10436432 AG--T-ATTGTCAATGGATGCAAGATCAATCCTCTTTTCTTCCAAAAT
1 AGTATCATTTTC-A--GATGCAAGATCAATCCTCTTTTCTTCCAAAAG
* *
10436477 AGTATCAGTTTCAGATGTAAGAT
1 AGTATCATTTTCAGATGCAAGAT
10436500 TAATATTGTT
Statistics
Matches: 91, Mismatches: 14, Indels: 16
0.75 0.12 0.13
Matches are distributed among these distances:
41 1 0.01
42 3 0.03
43 1 0.01
45 78 0.86
46 2 0.02
47 2 0.02
48 4 0.04
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (45 bp):
AGTATCATTTTCAGATGCAAGATCAATCCTCTTTTCTTCCAAAAG
Found at i:10443757 original size:16 final size:16
Alignment explanation
Indices: 10443738--10443792 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 16
10443728 TTAGTTCATC
10443738 TTTTTTTCTTTTCTTT
1 TTTTTTTCTTTTCTTT
**
10443754 TTTTTTT-TTGGC-TT
1 TTTTTTTCTTTTCTTT
*
10443768 TTGTTTTCTTCTTCTTT
1 TTTTTTTCTT-TTCTTT
10443785 TGTTTTTT
1 T-TTTTTT
10443793 TGTTGTTTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
14 8 0.28
15 5 0.17
16 8 0.28
17 3 0.10
18 5 0.17
ACGTcount: A:0.00, C:0.11, G:0.07, T:0.82
Consensus pattern (16 bp):
TTTTTTTCTTTTCTTT
Found at i:10443820 original size:3 final size:3
Alignment explanation
Indices: 10443814--10443854 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
10443804 CAACACAAAG
10443814 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
10443855 CTTTGGATTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:10444234 original size:4 final size:4
Alignment explanation
Indices: 10444208--10444290 Score: 98
Period size: 4 Copynumber: 21.2 Consensus size: 4
10444198 GTAATATTCC
* * * * * *
10444208 TGTA TGAA TGAA TGAA TGAA TGTA TGTA TGTA TGCA TGCA TG-- TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
10444254 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
10444291 AATGGTGGCC
Statistics
Matches: 74, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
2 2 0.03
4 72 0.97
ACGTcount: A:0.29, C:0.02, G:0.25, T:0.43
Consensus pattern (4 bp):
TGTA
Found at i:10450508 original size:17 final size:18
Alignment explanation
Indices: 10450471--10450508 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
10450461 AAAATACTAA
10450471 TTACGAAAATGTAACATAT
1 TTACGAAAA-GTAACATAT
*
10450490 TTACGAAAA-TAATATAT
1 TTACGAAAAGTAACATAT
10450507 TT
1 TT
10450509 TCTATTATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 9 0.50
19 9 0.50
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.37
Consensus pattern (18 bp):
TTACGAAAAGTAACATAT
Found at i:10450783 original size:15 final size:15
Alignment explanation
Indices: 10450750--10450789 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
10450740 GCGATTTCCT
* *
10450750 GATTTGTAGGTTTTTG
1 GATTT-TAGGGTTTAG
10450766 GATTTTAGGGTTTAG
1 GATTTTAGGGTTTAG
10450781 GATTTTAGG
1 GATTTTAGG
10450790 ATTTTGGAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.17, C:0.00, G:0.33, T:0.50
Consensus pattern (15 bp):
GATTTTAGGGTTTAG
Found at i:10452251 original size:18 final size:17
Alignment explanation
Indices: 10452218--10452257 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
10452208 ATATTTCTAA
**
10452218 TTTTTTATTATTTTATT
1 TTTTTTATTAAATTATT
10452235 TATTTTTATTAAATTATT
1 T-TTTTTATTAAATTATT
10452253 TTTTT
1 TTTTT
10452258 ATAAGTGGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTTTATTAAATTATT
Found at i:10454087 original size:11 final size:11
Alignment explanation
Indices: 10454068--10454097 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
10454058 TCCAAACAAA
*
10454068 AATAACAATAT
1 AATAGCAATAT
10454079 AATAGCAATAT
1 AATAGCAATAT
10454090 AATAGCAA
1 AATAGCAA
10454098 ACGACATCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.60, C:0.10, G:0.07, T:0.23
Consensus pattern (11 bp):
AATAGCAATAT
Found at i:10464262 original size:15 final size:15
Alignment explanation
Indices: 10464242--10464295 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
10464232 TATGTGATAA
10464242 TAATTAATATAATAT
1 TAATTAATATAATAT
10464257 TAATTAATATAATAT
1 TAATTAATATAATAT
* * * *
10464272 CATATCAATACAAAAT
1 TA-ATTAATATAATAT
10464288 TAATTAAT
1 TAATTAAT
10464296 TTGGTGATAT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
15 21 0.66
16 11 0.34
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.41
Consensus pattern (15 bp):
TAATTAATATAATAT
Found at i:10464439 original size:21 final size:22
Alignment explanation
Indices: 10464401--10464447 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
10464391 GATTTAAAAT
10464401 AATAAATAAAATTTTTTAGT-TA
1 AATAAATAAAATTTTTTA-TATA
*
10464423 AATAAATATAA-TTTTTATATA
1 AATAAATAAAATTTTTTATATA
10464444 AATA
1 AATA
10464448 TGATTAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 1 0.04
21 12 0.52
22 10 0.43
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (22 bp):
AATAAATAAAATTTTTTATATA
Found at i:10464578 original size:23 final size:22
Alignment explanation
Indices: 10464530--10464578 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
10464520 TATATAAGAG
*
10464530 AAATTAAATATATTTTTTAATT
1 AAATTAAATATATTTTTTAATA
10464552 AAATTAAATATCA-TTTTTATATA
1 AAATTAAATAT-ATTTTTTA-ATA
10464575 AAAT
1 AAAT
10464579 GGTAATCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 17 0.71
23 7 0.29
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (22 bp):
AAATTAAATATATTTTTTAATA
Found at i:10469295 original size:24 final size:24
Alignment explanation
Indices: 10469197--10469313 Score: 92
Period size: 24 Copynumber: 4.8 Consensus size: 24
10469187 GGGTCTTTTT
*
10469197 GAGCTTCCCGATTAATGGATCTCCG
1 GAGCTTCCCG-TTAATGGCTCTCCG
* * * * **
10469222 AAGCTTCCTGAT-ATGGCTCGCTT
1 GAGCTTCCCGTTAATGGCTCTCCG
* * *
10469245 GAACTTCCCGATATATGGCTATCCG
1 GAGCTTCCCGTTA-ATGGCTCTCCG
*
10469270 GAGCTTCCCGTTAATGGCTCTTCG
1 GAGCTTCCCGTTAATGGCTCTCCG
* *
10469294 GAGCTACCCGTTATTGGCTC
1 GAGCTTCCCGTTAATGGCTC
10469314 GCATGAGCAT
Statistics
Matches: 70, Mismatches: 20, Indels: 5
0.74 0.21 0.05
Matches are distributed among these distances:
23 16 0.23
24 28 0.40
25 26 0.37
ACGTcount: A:0.18, C:0.28, G:0.23, T:0.31
Consensus pattern (24 bp):
GAGCTTCCCGTTAATGGCTCTCCG
Found at i:10471246 original size:14 final size:14
Alignment explanation
Indices: 10471227--10471253 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
10471217 AAATTAGAAA
10471227 GATGATAAAATAAT
1 GATGATAAAATAAT
10471241 GATGATAAAATAA
1 GATGATAAAATAA
10471254 ATAAATAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.15, T:0.26
Consensus pattern (14 bp):
GATGATAAAATAAT
Found at i:10472204 original size:25 final size:25
Alignment explanation
Indices: 10472176--10472247 Score: 90
Period size: 25 Copynumber: 2.9 Consensus size: 25
10472166 TCCCAATATA
* *
10472176 TGGCTCTCTTGAGCTTCTCGTTATC
1 TGGCTCTCTTGAGCTTCTCGATAAC
** *
10472201 TGGCTCTCACGAGCTTCCCGATAAC
1 TGGCTCTCTTGAGCTTCTCGATAAC
*
10472226 TGGCTCTTTTGAGCTTCTCGAT
1 TGGCTCTCTTGAGCTTCTCGAT
10472248 TAATAGCTCT
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.12, C:0.29, G:0.21, T:0.38
Consensus pattern (25 bp):
TGGCTCTCTTGAGCTTCTCGATAAC
Found at i:10472256 original size:25 final size:25
Alignment explanation
Indices: 10472211--10472273 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
10472201 TGGCTCTCAC
* *
10472211 GAGCTTCCCGATAACTGGCTCTTTT
1 GAGCTTCCCGATAACTAGCTCTTTA
*
10472236 GAGCTTCTCGATTAA-TAGCTCTTTA
1 GAGCTTCCCGA-TAACTAGCTCTTTA
*
10472261 GAGCTTCCTGATA
1 GAGCTTCCCGATA
10472274 TTAGCTCGAA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
24 2 0.06
25 27 0.84
26 3 0.09
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.37
Consensus pattern (25 bp):
GAGCTTCCCGATAACTAGCTCTTTA
Found at i:10477230 original size:7 final size:8
Alignment explanation
Indices: 10477206--10477230 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
10477196 AATTTTTTAG
10477206 TTAGATTT
1 TTAGATTT
10477214 TTAGATTT
1 TTAGATTT
10477222 TTAGATTT
1 TTAGATTT
10477230 T
1 T
10477231 GATAGTTGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (8 bp):
TTAGATTT
Found at i:10477807 original size:28 final size:28
Alignment explanation
Indices: 10477765--10477820 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
10477755 AGCTTTCACG
*
10477765 GTTTGTGCTTTTATAATTCAATTTTGAT
1 GTTTGTGCTTCTATAATTCAATTTTGAT
10477793 GTTTGTGCTTCTATAATTCAATTTTGAT
1 GTTTGTGCTTCTATAATTCAATTTTGAT
10477821 TTACTTTCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.21, C:0.09, G:0.14, T:0.55
Consensus pattern (28 bp):
GTTTGTGCTTCTATAATTCAATTTTGAT
Found at i:10488417 original size:30 final size:30
Alignment explanation
Indices: 10488383--10488445 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
10488373 ACTTAACAAG
10488383 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
*
10488413 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
10488443 CAA
1 CAA
10488446 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.57, C:0.16, G:0.03, T:0.24
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:10488494 original size:11 final size:11
Alignment explanation
Indices: 10488480--10488522 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
10488470 AAACAATAAC
10488480 AGCAAAATAGT
1 AGCAAAATAGT
* *
10488491 AGCAACATAAT
1 AGCAAAATAGT
* *
10488502 AGTAAAATGGT
1 AGCAAAATAGT
10488513 AGCAAAATAG
1 AGCAAAATAG
10488523 AGAGAAAACA
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.53, C:0.09, G:0.19, T:0.19
Consensus pattern (11 bp):
AGCAAAATAGT
Found at i:10488500 original size:22 final size:22
Alignment explanation
Indices: 10488475--10488517 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
10488465 TATTCAAACA
10488475 ATAACAGCAAAATAGTAGCAAC
1 ATAACAGCAAAATAGTAGCAAC
* * *
10488497 ATAATAGTAAAATGGTAGCAA
1 ATAACAGCAAAATAGTAGCAA
10488518 AATAGAGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.53, C:0.12, G:0.16, T:0.19
Consensus pattern (22 bp):
ATAACAGCAAAATAGTAGCAAC
Found at i:10488530 original size:22 final size:22
Alignment explanation
Indices: 10488474--10488530 Score: 53
Period size: 22 Copynumber: 2.6 Consensus size: 22
10488464 ATATTCAAAC
* *
10488474 AATAACAGCAAAATAGTAGCAA
1 AATAAGAGTAAAATAGTAGCAA
* * *
10488496 CATAATAGTAAAATGGTAGCAA
1 AATAAGAGTAAAATAGTAGCAA
10488518 AATAGAGAG-AAAA
1 AATA-AGAGTAAAA
10488531 CAACAAGAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
22 25 0.89
23 3 0.11
ACGTcount: A:0.58, C:0.09, G:0.18, T:0.16
Consensus pattern (22 bp):
AATAAGAGTAAAATAGTAGCAA
Found at i:10489463 original size:19 final size:19
Alignment explanation
Indices: 10489422--10489467 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
10489412 GTGGGTTAAT
10489422 ATTAATATT-AATATTTTTA
1 ATTAAT-TTAAATATTTTTA
10489441 ATTAGATTTAAATATTTTT-
1 ATTA-ATTTAAATATTTTTA
10489460 ATTAATTT
1 ATTAATTT
10489468 TAAACAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 4 0.16
19 10 0.40
20 11 0.44
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (19 bp):
ATTAATTTAAATATTTTTA
Found at i:10489469 original size:19 final size:19
Alignment explanation
Indices: 10489421--10489471 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
10489411 CGTGGGTTAA
*
10489421 TATTAATATT-AATATTTT
1 TATTAATTTTAAATATTTT
10489439 TAATTAGA-TTTAAATATTTT
1 T-ATTA-ATTTTAAATATTTT
10489459 TATTAATTTTAAA
1 TATTAATTTTAAA
10489472 CAATAAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
18 2 0.07
19 16 0.57
20 10 0.36
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (19 bp):
TATTAATTTTAAATATTTT
Found at i:10494484 original size:32 final size:32
Alignment explanation
Indices: 10494443--10494505 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
10494433 AACCCCTCTT
10494443 CACAGAACAGAAATAAGTAAGGGCTTAAGGGC
1 CACAGAACAGAAATAAGTAAGGGCTTAAGGGC
10494475 CACAGAACAGAAATAAGTAAGGGCTTAAGGG
1 CACAGAACAGAAATAAGTAAGGGCTTAAGGG
10494506 ATCCCCTTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.44, C:0.14, G:0.29, T:0.13
Consensus pattern (32 bp):
CACAGAACAGAAATAAGTAAGGGCTTAAGGGC
Found at i:10496289 original size:16 final size:16
Alignment explanation
Indices: 10496268--10496308 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
10496258 AATAATGGAA
10496268 ATATATAAAAACATGT
1 ATATATAAAAACATGT
* **
10496284 ATATATGAAAGTATGT
1 ATATATAAAAACATGT
10496300 ATATATAAA
1 ATATATAAA
10496309 TTAAGGAGTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.54, C:0.02, G:0.10, T:0.34
Consensus pattern (16 bp):
ATATATAAAAACATGT
Found at i:10498418 original size:132 final size:132
Alignment explanation
Indices: 10498277--10498538 Score: 443
Period size: 132 Copynumber: 2.0 Consensus size: 132
10498267 TTCAACCTAC
* * * **
10498277 TCCACTACTGCTTATGGAAATGAGCTCTGTAATCTTCAATCTATTCCACTGCCAACCAGGGAGAT
1 TCCACTACTGCTTAGGGAAATAAGATCTAAAATCTTCAATCTATTCCACTGCCAACCAGGGAGAT
*
10498342 AGAATTACTGGCCTCAATGTACTCCACTGTAACCACATGGAGGTAAAATCTGCCATCTTCGATCT
66 AGAATTACTGGCCTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCT
10498407 GT
131 GT
*
10498409 TCCACTACTGCTTAGGGAGATAAGATCTAAAATCTTCAATCTATTCCACTGCCAACCAGGGAGAT
1 TCCACTACTGCTTAGGGAAATAAGATCTAAAATCTTCAATCTATTCCACTGCCAACCAGGGAGAT
* *
10498474 AGAATTACTGGCTTCAATGTACTCCACTGTAATCACAGGGAGGTAAAATCTGCCATCTTCGATCT
66 AGAATTACTGGCCTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCT
10498539 TTAATCTATT
Statistics
Matches: 121, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 121 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (132 bp):
TCCACTACTGCTTAGGGAAATAAGATCTAAAATCTTCAATCTATTCCACTGCCAACCAGGGAGAT
AGAATTACTGGCCTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCT
GT
Found at i:10498426 original size:88 final size:88
Alignment explanation
Indices: 10498158--10498430 Score: 223
Period size: 88 Copynumber: 3.1 Consensus size: 88
10498148 CCGCAATGTC
* *
10498158 AGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTTAGGGAGGTAAAAT-TCACCAT
1 AGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTTATGGAGGTAAAATCT-GCCAT
*
10498222 CTTCGATCTGCTCCACTACTGCTT
65 CTTCGATCTGTTCCACTACTGCTT
* * * *** ** ** * ** **
10498246 AGGGTGACAGAATCTGCAATCTTCAACCTACTCCAC--T-ACTGCTTATGGAAATGAGCTCTGTA
1 AGGGAGATAGAAT-TACTGGCTTCAATGTACTCCACTGTAAC--CTTATGGAGGTAAAATCTGCC
* * * ** *
10498308 ATCTTCAATCTATTCCACTGCCAAC-C
63 ATCTTCGATCTGTTCCACT-ACTGCTT
* **
10498334 AGGGAGATAGAATTACTGGCCTCAATGTACTCCACTGTAACCACATGGAGGTAAAATCTGCCATC
1 AGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTTATGGAGGTAAAATCTGCCATC
10498399 TTCGATCTGTTCCACTACTGCTT
66 TTCGATCTGTTCCACTACTGCTT
10498422 AGGGAGATA
1 AGGGAGATA
10498431 AGATCTAAAA
Statistics
Matches: 128, Mismatches: 48, Indels: 18
0.66 0.25 0.09
Matches are distributed among these distances:
86 2 0.02
87 18 0.14
88 86 0.67
89 20 0.16
90 2 0.02
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (88 bp):
AGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTTATGGAGGTAAAATCTGCCATC
TTCGATCTGTTCCACTACTGCTT
Found at i:10498502 original size:43 final size:44
Alignment explanation
Indices: 10498442--10498776 Score: 144
Period size: 43 Copynumber: 7.2 Consensus size: 44
10498432 GATCTAAAAT
*
10498442 CTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTACT-GG
1 CTTCAATCTACTCCACTGCCAACCAGGGAGATAGAATTACTCGG
* * * * *
10498485 CTTCAATGTACTCCACTG-TAATCACAGGGAGGTAAAATCTGCCATCTTCGAT
1 CTTCAATCTACTCCACTGCCAA-C-CAGGGAGATAGAAT-T---A-C-TCG-G
* *
10498537 CTTTAATCTATTCCACTGCCAACCAGGGAGATAGAATTA-TCGG
1 CTTCAATCTACTCCACTGCCAACCAGGGAGATAGAATTACTCGG
* * * * * * *
10498580 CTTCAATGTACTCCACTG-TAGTCACAAGGAGGTAAAATCTGCCATCTTCGAT
1 CTTCAATCTACTCCACTGCCA-AC-CAGGGAGATAGAAT-T---A-C-TCG-G
* *
10498632 CTGCAATCTATTCCACTGCCAACCAGGGAGATAGAATTA-TCGG
1 CTTCAATCTACTCCACTGCCAACCAGGGAGATAGAATTACTCGG
* * * * * *
10498675 CTTCAATGTACTCCACTG-TAGTCACAGGGAGGTAAAATCTGCCATCTTCGAT
1 CTTCAATCTACTCCACTGCCA-AC-CAGGGAGATAGAAT-T---A-C-TCG-G
* *
10498727 ATTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTACT-GG
1 CTTCAATCTACTCCACTGCCAACCAGGGAGATAGAATTACTCGG
*
10498770 ATTCAAT
1 CTTCAAT
10498777 GTCTGTTTAA
Statistics
Matches: 212, Mismatches: 47, Indels: 66
0.65 0.14 0.20
Matches are distributed among these distances:
42 4 0.02
43 56 0.26
44 42 0.20
45 4 0.02
46 1 0.00
47 3 0.01
48 3 0.01
49 1 0.00
50 4 0.02
51 42 0.20
52 48 0.23
53 4 0.02
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.27
Consensus pattern (44 bp):
CTTCAATCTACTCCACTGCCAACCAGGGAGATAGAATTACTCGG
Found at i:10498513 original size:44 final size:45
Alignment explanation
Indices: 10498465--10498705 Score: 136
Period size: 44 Copynumber: 5.2 Consensus size: 45
10498455 CACTGCCAAC
10498465 CAGGGAGATAGAATTACT-GGCTTCAATGTACTCCACTGTAATCA
1 CAGGGAGATAGAATTACTCGGCTTCAATGTACTCCACTGTAATCA
* * * * * * *
10498509 CAGGGAGGTAAAATCTGCCATCTTCGATCTTTAATCTATTCCACTGCCAA-C-
1 CAGGGAGATAGAAT-T---A-C-TCG-GCTTCAATGTACTCCACTG-TAATCA
*
10498560 CAGGGAGATAGAATTA-TCGGCTTCAATGTACTCCACTGTAGTCA
1 CAGGGAGATAGAATTACTCGGCTTCAATGTACTCCACTGTAATCA
* * * * * * * *
10498604 CAAGGAGGTAAAATCTGCCATCTTCGATCTGCAATCTATTCCACTGCCAA-C-
1 CAGGGAGATAGAAT-T---A-C-TCG-GCTTCAATGTACTCCACTG-TAATCA
*
10498655 CAGGGAGATAGAATTA-TCGGCTTCAATGTACTCCACTGTAGTCA
1 CAGGGAGATAGAATTACTCGGCTTCAATGTACTCCACTGTAATCA
10498699 CAGGGAG
1 CAGGGAG
10498706 GTAAAATCTG
Statistics
Matches: 142, Mismatches: 33, Indels: 44
0.65 0.15 0.20
Matches are distributed among these distances:
42 2 0.01
43 32 0.23
44 36 0.25
45 2 0.01
47 2 0.01
48 2 0.01
49 1 0.01
50 3 0.02
51 27 0.19
52 32 0.23
53 3 0.02
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (45 bp):
CAGGGAGATAGAATTACTCGGCTTCAATGTACTCCACTGTAATCA
Found at i:10498515 original size:176 final size:174
Alignment explanation
Indices: 10498157--10498502 Score: 394
Period size: 176 Copynumber: 2.0 Consensus size: 174
10498147 TCCGCAATGT
* **
10498157 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTTAGGGAGGTAAAATTCACCAT
1 CAGGGAGATAGAATTACTGGCCTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCAT
* * ** **
10498222 CTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTG
66 CTTCGATCTGCTCCACTACTGCTTAGGGAGAAAGAATCTAAAATCTTCAACCTACTCCACTACAA
* * * * *
10498287 CTTATGGAAATGAGCTCTGTAATCTTCAATCTATTCCACTGCCAAC
131 CTCAGGGAAATGAACTCTG--AGCTTCAATCTACTCCACTGCCAAC
* *
10498333 CAGGGAGATAGAATTACTGGCCTCAATGTACTCCACTGTAACCACATGGAGGTAAAA-TCTGCCA
1 CAGGGAGATAGAATTACTGGCCTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTC-ACCA
* * * *
10498397 TCTTCGATCTGTTCCACTACTGCTTAGGGAGATAAG-ATCTAAAATCTTCAATCTATTCCACTGC
65 TCTTCGATCTGCTCCACTACTGCTTAGGGAGA-AAGAATCTAAAATCTTCAACCTACTCCACT-A
* * *
10498461 CAAC-CAGGGAGATAGAATTACTG-GCTTCAATGTACTCCACTG
128 CAACTCAGGGAAAT-GAACT-CTGAGCTTCAATCTACTCCACTG
10498503 TAATCACAGG
Statistics
Matches: 142, Mismatches: 23, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
175 18 0.13
176 114 0.80
177 7 0.05
178 3 0.02
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (174 bp):
CAGGGAGATAGAATTACTGGCCTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCAT
CTTCGATCTGCTCCACTACTGCTTAGGGAGAAAGAATCTAAAATCTTCAACCTACTCCACTACAA
CTCAGGGAAATGAACTCTGAGCTTCAATCTACTCCACTGCCAAC
Found at i:10498547 original size:95 final size:95
Alignment explanation
Indices: 10498440--10498778 Score: 592
Period size: 95 Copynumber: 3.6 Consensus size: 95
10498430 AAGATCTAAA
10498440 ATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTA-CTGGCTTCAATGTACTCCACTGT
1 ATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATC-GGCTTCAATGTACTCCACTGT
*
10498504 AATCACAGGGAGGTAAAATCTGCCATCTTCG
65 AGTCACAGGGAGGTAAAATCTGCCATCTTCG
*
10498535 ATCTTTAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTA
1 ATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTA
*
10498600 GTCACAAGGAGGTAAAATCTGCCATCTTCG
66 GTCACAGGGAGGTAAAATCTGCCATCTTCG
*
10498630 ATCTGCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTA
1 ATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTA
10498695 GTCACAGGGAGGTAAAATCTGCCATCTTCG
66 GTCACAGGGAGGTAAAATCTGCCATCTTCG
* *
10498725 ATATTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTA-CTGGATTCAATGT
1 ATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATC-GGCTTCAATGT
10498779 CTGTTTAAAT
Statistics
Matches: 233, Mismatches: 9, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
94 1 0.00
95 231 0.99
96 1 0.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (95 bp):
ATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTA
GTCACAGGGAGGTAAAATCTGCCATCTTCG
Found at i:10498831 original size:190 final size:189
Alignment explanation
Indices: 10498442--10498838 Score: 516
Period size: 190 Copynumber: 2.1 Consensus size: 189
10498432 GATCTAAAAT
10498442 CTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAAT
1 CTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAAT
* *
10498507 CACAGGGAGGTAAAATCTGCCATCTTCGATCTTTAATCTATTCCACTGCCAACCAGGGAGATAGA
66 CACAGGGAGGTAAAATCTGCCATCTTCGATATTCAATCTATTCCACTGCCAACCAGGGAGATAGA
* * * * * ** * *
10498572 ATTATCGGCTTCAATGTACTCCACTGTAGTCACAAGGAGGTAAAATCTGCCATCTTCGAT
131 ATTATCGGATTCAATGTACTCAAATGCAATCACAAGGAAATAAAATCT-CCATCGTCGAG
* *
10498632 CTGCAATCTATTCCACTGCCAACCAGGGAGATAGAATTA-TCGGCTTCAATGTACTCCACTGTAG
1 CTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTACT-GGCTTCAATGTACTCCACTGTAA
10498696 TCACAGGGAGGTAAAATCTGCCATCTTCGATATTCAATCTATTCCACTGCCAACCAGGGAGATAG
65 TCACAGGGAGGTAAAATCTGCCATCTTCGATATTCAATCTATTCCACTGCCAACCAGGGAGATAG
* ** ** * *
10498761 AATTA-CTGGATTCAATGT-CTGTTTAAATGCAATGTCGGGGAAATAAGAT-T-CGTCGTCGTAG
130 AATTATC-GGATTCAATGTAC---TCAAATGCAATCACAAGGAAATAAAATCTCCATCGTCG-AG
10498822 CTTCAATCTATTCCACT
1 CTTCAATCTATTCCACT
10498839 ACATCCCCAG
Statistics
Matches: 180, Mismatches: 21, Indels: 12
0.85 0.10 0.06
Matches are distributed among these distances:
189 9 0.05
190 155 0.86
191 1 0.01
192 15 0.08
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (189 bp):
CTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAAT
CACAGGGAGGTAAAATCTGCCATCTTCGATATTCAATCTATTCCACTGCCAACCAGGGAGATAGA
ATTATCGGATTCAATGTACTCAAATGCAATCACAAGGAAATAAAATCTCCATCGTCGAG
Found at i:10498860 original size:51 final size:49
Alignment explanation
Indices: 10498798--10499508 Score: 289
Period size: 50 Copynumber: 14.3 Consensus size: 49
10498788 TGCAATGTCG
* * *
10498798 GGGAAA-TAAGATTCGTCGTCGTAGCTTCAATCTATTCCACTACATCCCC
1 GGGAAAGTAAGATTCGTCGTTGTAGCTTCAATCT-TTCCACTGCATCGCC
* * ** * *
10498847 AGGGAAAGTAAGATTCGTCGTTGTGGCCTCAATCTTTTAATTGCAAT-GTC
1 -GGGAAAGTAAGATTCGTCGTTGTAGCTTCAATCTTTCCACTGC-ATCGCC
* * **
10498897 GGGGAAG-CAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCATCGCC
1 GGGAAAGTAAGATTCGTCGTTGTAGCTTCAATCT-TTCCACTGCATCGCC
* * ** * *
10498946 TGGGAAAGTAAGATTCGTCGTGGTGGCTTCAATCTTTTAATTGCAAT-GTC
1 -GGGAAAGTAAGATTCGTCGTTGTAGCTTCAATCTTTCCACTGC-ATCGCC
* ** * *
10498996 GGGGAAGCGAGATTCGCCATTGTAGCTTCAATCTGTTCCACTGCA-CTGCC
1 GGGAAAGTAAGATTCGTCGTTGTAGCTTCAATCT-TTCCACTGCATC-GCC
* ** * * ** *
10499046 TGGGAAAGTAAGATTC-ACTGTTGTAGCTTCAATCTTTTAATTGTAATATCA
1 -GGGAAAGTAAGATTCGTC-GTTGTAGCTTCAATCTTTCCACTG-CATCGCC
** * * *
10499097 GGG-AAGCGAGATTCGCCGTTGTAGCTTCAATCTGTTTCGCTGCATCGCC
1 GGGAAAGTAAGATTCGTCGTTGTAGCTTCAATCT-TTCCACTGCATCGCC
* * * ** * *
10499146 TGGAAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTAAAATCGCAAT-GTC
1 GGGAAAGTAAGATTCGTCGTTGTAGCTTCAATCTTTCCACT-GC-ATCGCC
* ** ** * ** *
10499196 GGGGAAGCGAGATTCACCGTTGTAGCTTCAATCTGTTCCGCTTTATTGCC
1 GGGAAAGTAAGATTCGTCGTTGTAGCTTCAATCT-TTCCACTGCATCGCC
** * * * * * *
10499246 TTG-AAGTGAGATTCGCCGTCGTAGCTTCAATCTGTTCCGCTGCATCATCT
1 GGGAAAGTAAGATTCGTCGTTGTAGCTTCAATCT-TTCCACTGCATC-GCC
** * * * ** * * *
10499296 GGG-AAGTAAGATTCACCATTGTGGCTTAAATCTTTTAAATTACAAT-GTC
1 GGGAAAGTAAGATTCGTCGTTGTAGCTTCAATC-TTTCCACTGC-ATCGCC
* * * * * * * *
10499345 GGGGAAGTGAGATTTGCCGTCGTAGCTTTAATCTGTTTCGCTGCATCGCC
1 GGGAAAGTAAGATTCGTCGTTGTAGCTTCAATCT-TTCCACTGCATCGCC
* * ** * *
10499395 TGGG-AAGTAAGATTCGCCGTTGTGGCTTCAATCTTTAAAATTGCAAT-GTC
1 -GGGAAAGTAAGATTCGTCGTTGTAGCTTCAATCTTT-CCACTGC-ATCGCC
* * * **
10499445 GGGGAAGTGAGATTCGCCGTTGTAGCTTCAATCTGTTCTGCTGCATCGCC
1 GGGAAAGTAAGATTCGTCGTTGTAGCTTCAATCT-TTCCACTGCATCGCC
*
10499495 TGG-AAGTAAGATTC
1 GGGAAAGTAAGATTC
10499509 ACCGTCGTGG
Statistics
Matches: 486, Mismatches: 142, Indels: 67
0.70 0.20 0.10
Matches are distributed among these distances:
48 23 0.05
49 137 0.28
50 233 0.48
51 93 0.19
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (49 bp):
GGGAAAGTAAGATTCGTCGTTGTAGCTTCAATCTTTCCACTGCATCGCC
Found at i:10498954 original size:99 final size:100
Alignment explanation
Indices: 10498782--10499234 Score: 626
Period size: 100 Copynumber: 4.5 Consensus size: 100
10498772 TCAATGTCTG
* *** * * * * *
10498782 TTTAAATGCAATGTCGGGGAAATAAGATTCGTCGTCGTAGCTTCAATCTATTCCACTACATCCCC
1 TTTAATTGCAATGTCGGGGAAGCGAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCATCGCC
* *
10498847 AGGGAAAGTAAGATTCGTCGTTGTGGCCTCAATCT
66 TGGGAAAGTAAGATTCGTCGTTGTGGCTTCAATCT
*
10498882 TTTAATTGCAATGTCGGGGAAGC-AGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCATCGCC
1 TTTAATTGCAATGTCGGGGAAGCGAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCATCGCC
*
10498946 TGGGAAAGTAAGATTCGTCGTGGTGGCTTCAATCT
66 TGGGAAAGTAAGATTCGTCGTTGTGGCTTCAATCT
*
10498981 TTTAATTGCAATGTCGGGGAAGCGAGATTCGCCATTGTAGCTTCAATCTGTTCCACTGCA-CTGC
1 TTTAATTGCAATGTCGGGGAAGCGAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCATC-GC
* *
10499045 CTGGGAAAGTAAGATTC-ACTGTTGTAGCTTCAATCT
65 CTGGGAAAGTAAGATTCGTC-GTTGTGGCTTCAATCT
* * * * *
10499081 TTTAATTGTAATATCAGGGAAGCGAGATTCGCCGTTGTAGCTTCAATCTGTTTCGCTGCATCGCC
1 TTTAATTGCAATGTCGGGGAAGCGAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCATCGCC
*
10499146 T-GGAAAGTAAGATTCGCCGTTGTGGCTTCAATCT
66 TGGGAAAGTAAGATTCGTCGTTGTGGCTTCAATCT
* * *
10499180 TTAAAATCGCAATGTCGGGGAAGCGAGATTCACCGTTGTAGCTTCAATCTGTTCC
1 TT-TAATTGCAATGTCGGGGAAGCGAGATTCGCCGTTGTAGCTTCAATCTGTTCC
10499235 GCTTTATTGC
Statistics
Matches: 315, Mismatches: 32, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
99 123 0.39
100 191 0.61
101 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.31
Consensus pattern (100 bp):
TTTAATTGCAATGTCGGGGAAGCGAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCATCGCC
TGGGAAAGTAAGATTCGTCGTTGTGGCTTCAATCT
Found at i:10499011 original size:199 final size:199
Alignment explanation
Indices: 10498782--10499234 Score: 624
Period size: 199 Copynumber: 2.3 Consensus size: 199
10498772 TCAATGTCTG
* *** * * *
10498782 TTTAAATGCAATGTCGGGGAAATAAGATTCGTCGTCGTAGCTTCAATCTATTCCACTACA-TCCC
1 TTTAATTGCAATGTCGGGGAAGCGAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTACACT-CC
* * * *
10498846 CAGGGAAAGTAAGATTC-GTCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGC-AGAT
65 CAGGGAAAGTAAGATTCACT-GTTGTAGCCTCAATCTTTTAATTGCAATATCAGGGAAGCGAGAT
*
10498909 TCACCGTTGTAGCTTCAATCTGTTCCACTGCATCGCCTGGGAAAGTAAGATTCGTCGTGGTGGCT
129 TCACCGTTGTAGCTTCAATCTGTTCCACTGCATCGCCT-GGAAAGTAAGATTCGCCGTGGTGGCT
10498974 TCAATCT
193 TCAATCT
* * *
10498981 TTTAATTGCAATGTCGGGGAAGCGAGATTCGCCATTGTAGCTTCAATCTGTTCCACTGCACTGCC
1 TTTAATTGCAATGTCGGGGAAGCGAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTACACTCCC
* * *
10499046 TGGGAAAGTAAGATTCACTGTTGTAGCTTCAATCTTTTAATTGTAATATCAGGGAAGCGAGATTC
66 AGGGAAAGTAAGATTCACTGTTGTAGCCTCAATCTTTTAATTGCAATATCAGGGAAGCGAGATTC
* * * *
10499111 GCCGTTGTAGCTTCAATCTGTTTCGCTGCATCGCCTGGAAAGTAAGATTCGCCGTTGTGGCTTCA
131 ACCGTTGTAGCTTCAATCTGTTCCACTGCATCGCCTGGAAAGTAAGATTCGCCGTGGTGGCTTCA
10499176 ATCT
196 ATCT
* * *
10499180 TTAAAATCGCAATGTCGGGGAAGCGAGATTCACCGTTGTAGCTTCAATCTGTTCC
1 TT-TAATTGCAATGTCGGGGAAGCGAGATTCGCCGTTGTAGCTTCAATCTGTTCC
10499235 GCTTTATTGC
Statistics
Matches: 224, Mismatches: 26, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
199 135 0.60
200 89 0.40
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.31
Consensus pattern (199 bp):
TTTAATTGCAATGTCGGGGAAGCGAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTACACTCCC
AGGGAAAGTAAGATTCACTGTTGTAGCCTCAATCTTTTAATTGCAATATCAGGGAAGCGAGATTC
ACCGTTGTAGCTTCAATCTGTTCCACTGCATCGCCTGGAAAGTAAGATTCGCCGTGGTGGCTTCA
ATCT
Found at i:10499276 original size:249 final size:248
Alignment explanation
Indices: 10498998--10499525 Score: 754
Period size: 249 Copynumber: 2.1 Consensus size: 248
10498988 GCAATGTCGG
* * *
10498998 GGAAGCGAGATTCGCCATTGTAGCTTCAATCTGTTCCACTGCACTGC-CTGGGAAAGTAAGATTC
1 GGAAGTGAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTGCA-T-CACTGGG-AAGTAAGATTC
** * ** *
10499062 ACTGTTGTAGCTTCAATCTTTT-AATTGTAATATCAGGGAAGCGAGATTCGCCGTTGTAGCTTCA
63 ACCATTGTAGCTTAAATCTTTTAAATTACAATATCAGGGAAGCGAGATTCGCCGTCGTAGCTTCA
10499126 ATCTGTTTCGCTGCATCGCCTGGAAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTAAAATCGCA
128 ATCTGTTTCGCTGCATCGCCTGGAAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTAAAATCGCA
** *
10499191 ATGTCGGGGAAGCGAGATTCACCGTTGTAGCTTCAATCTGTTCCGCTTTATTGCCT
193 ATGTCGGGGAAGCGAGATTCACCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCT
* *
10499247 TGAAGTGAGATTCGCCGTCGTAGCTTCAATCTGTTCCGCTGCATCATCTGGGAAGTAAGATTCAC
1 GGAAGTGAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTGCATCA-CTGGGAAGTAAGATTCAC
* * * * * *
10499312 CATTGTGGCTTAAATCTTTTAAATTACAATGTCGGGGAAGTGAGATTTGCCGTCGTAGCTTTAAT
65 CATTGTAGCTTAAATCTTTTAAATTACAATATCAGGGAAGCGAGATTCGCCGTCGTAGCTTCAAT
* *
10499377 CTGTTTCGCTGCATCGCCTGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTAAAATTGCAAT
130 CTGTTTCGCTGCATCGCCTGGAAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTAAAATCGCAAT
* * *
10499442 GTCGGGGAAGTGAGATTCGCCGTTGTAGCTTCAATCTGTTCTGCTGCATCGCCT
195 GTCGGGGAAGCGAGATTCACCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCT
* * *
10499496 GGAAGTAAGATTCACCGTCGTGGCTTCAAT
1 GGAAGTGAGATTCGCCGTCGTAGCTTCAAT
10499526 ATTTTAAATT
Statistics
Matches: 247, Mismatches: 29, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
247 1 0.00
248 30 0.12
249 216 0.87
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (248 bp):
GGAAGTGAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTGCATCACTGGGAAGTAAGATTCACC
ATTGTAGCTTAAATCTTTTAAATTACAATATCAGGGAAGCGAGATTCGCCGTCGTAGCTTCAATC
TGTTTCGCTGCATCGCCTGGAAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTAAAATCGCAATG
TCGGGGAAGCGAGATTCACCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCT
Found at i:10499552 original size:199 final size:200
Alignment explanation
Indices: 10499248--10499682 Score: 631
Period size: 199 Copynumber: 2.2 Consensus size: 200
10499238 TTATTGCCTT
* *
10499248 GAAGTGAGATTCGCCGTCGTAGCTTCAATCTGTTCCGCTGCATCATCTGGGAAGTAAGATTCACC
1 GAAGTGAGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCACCTGGGAAGTAAGATTCACC
* * ** *
10499313 ATTGTGGCTTAAATCTTTTAAATTACAATGTCGGGGAAGTGAGATTTGCCGTCGTAGCTTTAATC
66 ATCGTGGCTTAAATATTTTAAATTACAATGTCGGGGAAGTGAGATTCACCGTCGTAACTTTAATC
* * * *
10499378 TGTTTCGCTGCATCGCCTGGGAA-GTAAGATTCGCCGTTGTGGCTTCAATCTTTAAAATTGCAAT
131 TGTTCCGCTGCATCGCCTAGGAAGGTAAGATTCGCCATTGTGGCCTCAATCTTT-AAATTGCAAT
* *
10499442 GTCGGG
195 ATCAGG
* *
10499448 GAAGTGAGATTCGCCGTTGTAGCTTCAATCTGTTCTGCTGCATCGCCT-GGAAGTAAGATTCACC
1 GAAGTGAGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCACCTGGGAAGTAAGATTCACC
* * * *
10499512 GTCGTGGCTTCAATATTTTAAATTGCAATGTCGGGGAAGTGAGATTCACCGTCGTAACTTTAATT
66 ATCGTGGCTTAAATATTTTAAATTACAATGTCGGGGAAGTGAGATTCACCGTCGTAACTTTAATC
* *
10499577 TGTTCCGCTGCATCGCCTAGGAAGGTAAGATTTGCCATTGTGGCCTCAATCTTTTAATTGCAATA
131 TGTTCCGCTGCATCGCCTAGGAAGGTAAGATTCGCCATTGTGGCCTCAATCTTTAAATTGCAATA
10499642 TCAGG
196 TCAGG
** *
10499647 GAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
1 GAAGTGAGATTCGCCGTTGTAGCTTCAATCTGTTCC
10499683 ACTGTACCGC
Statistics
Matches: 209, Mismatches: 25, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
199 138 0.66
200 71 0.34
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (200 bp):
GAAGTGAGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCACCTGGGAAGTAAGATTCACC
ATCGTGGCTTAAATATTTTAAATTACAATGTCGGGGAAGTGAGATTCACCGTCGTAACTTTAATC
TGTTCCGCTGCATCGCCTAGGAAGGTAAGATTCGCCATTGTGGCCTCAATCTTTAAATTGCAATA
TCAGG
Found at i:10499600 original size:50 final size:49
Alignment explanation
Indices: 10499098--10499600 Score: 180
Period size: 50 Copynumber: 10.1 Consensus size: 49
10499088 GTAATATCAG
* * * *
10499098 GGAAGCGAGATTCGCCGTTGTAGCTTCAATCTGTTTC-GCTGCATCGCCT
1 GGAAGTGAGATTCACCGTCGTAGCTTCAATTTG-TTCAGCTGCATCGCCT
* * * * * * ** **
10499147 GGAAAGTAAGATTCGCCGTTGTGGCTTCAATCT-TTAAAATCGCAAT-GTCGG
1 GG-AAGTGAGATTCACCGTCGTAGCTTCAATTTGTTCAGCT-GC-ATCG-CCT
* * * * ** *
10499198 GGAAGCGAGATTCACCGTTGTAGCTTCAATCTGTTCCGCTTTATTGCCT
1 GGAAGTGAGATTCACCGTCGTAGCTTCAATTTGTTCAGCTGCATCGCCT
* * * * **
10499247 TGAAGTGAGATTCGCCGTCGTAGCTTCAATCTGTTCCGCTGCATCATCT
1 GGAAGTGAGATTCACCGTCGTAGCTTCAATTTGTTCAGCTGCATCGCCT
* * * * * * ** * **
10499296 GGGAAGTAAGATTCACCATTGTGGCTTAAATCTT-TTAAATTACAAT-GTCGG
1 -GGAAGTGAGATTCACCGTCGTAGCTTCAAT-TTGTTCAGCTGC-ATCG-CCT
** * *
10499347 GGAAGTGAGATTTGCCGTCGTAGCTTTAATCTGTTTC-GCTGCATCGCCT
1 GGAAGTGAGATTCACCGTCGTAGCTTCAATTTG-TTCAGCTGCATCGCCT
* * * * ** ** **
10499396 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTT-TAAAATTGCAAT-GTCGG
1 -GGAAGTGAGATTCACCGTCGTAGCTTCAAT-TTGTTCAGCTGC-ATCG-CCT
* * * *
10499447 GGAAGTGAGATTCGCCGTTGTAGCTTCAATCTGTTCTGCTGCATCGCCT
1 GGAAGTGAGATTCACCGTCGTAGCTTCAATTTGTTCAGCTGCATCGCCT
* * * ** **
10499496 GGAAGTAAGATTCACCGTCGTGGCTTCAATATT-TTAAATTGCAAT-GTCGG
1 GGAAGTGAGATTCACCGTCGTAGCTTCAAT-TTGTTCAGCTGC-ATCG-CCT
* * *
10499546 GGAAGTGAGATTCACCGTCGTAACTTTAATTTGTTCCGCTGCATCGCCT
1 GGAAGTGAGATTCACCGTCGTAGCTTCAATTTGTTCAGCTGCATCGCCT
10499595 AGGAAG
1 -GGAAG
10499601 GTAAGATTTG
Statistics
Matches: 324, Mismatches: 103, Indels: 53
0.68 0.21 0.11
Matches are distributed among these distances:
48 2 0.01
49 92 0.28
50 213 0.66
51 17 0.05
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (49 bp):
GGAAGTGAGATTCACCGTCGTAGCTTCAATTTGTTCAGCTGCATCGCCT
Found at i:10499711 original size:100 final size:100
Alignment explanation
Indices: 10499248--10499682 Score: 586
Period size: 100 Copynumber: 4.4 Consensus size: 100
10499238 TTATTGCCTT
** *
10499248 GAAGTGAGATTCGCCGTCGTAGCTTCAATCTGTTCCGCTGCATCATCTGGGAAGTAAGATTCACC
1 GAAGTGAGATTCGCCGTCGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGGAAGTAAGATTCGCC
* *
10499313 ATTGTGGCTTAAATCTTTTAAATTACAATGTCGGG
66 ATTGTGGCTTCAATCTTTTAAATTGCAATGTCGGG
* * *
10499348 GAAGTGAGATTTGCCGTCGTAGCTTTAATCTGTTTCGCTGCATCGCCTGGGAAGTAAGATTCGCC
1 GAAGTGAGATTCGCCGTCGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGGAAGTAAGATTCGCC
* *
10499413 GTTGTGGCTTCAATCTTTAAAATTGCAATGTCGGG
66 ATTGTGGCTTCAATCTTTTAAATTGCAATGTCGGG
* * *
10499448 GAAGTGAGATTCGCCGTTGTAGCTTCAATCTGTTCTGCTGCATCGCCT-GGAAGTAAGATTCACC
1 GAAGTGAGATTCGCCGTCGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGGAAGTAAGATTCGCC
* * *
10499512 GTCGTGGCTTCAATATTTTAAATTGCAATGTCGGG
66 ATTGTGGCTTCAATCTTTTAAATTGCAATGTCGGG
* * * * * *
10499547 GAAGTGAGATTCACCGTCGTAACTTTAATTTGTTCCGCTGCATCGCCTAGGAAGGTAAGATTTGC
1 GAAGTGAGATTCGCCGTCGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGGAA-GTAAGATTCGC
* * *
10499612 CATTGTGGCCTCAATCTTTT-AATTGCAATATCAGG
65 CATTGTGGCTTCAATCTTTTAAATTGCAATGTCGGG
** * *
10499647 GAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
1 GAAGTGAGATTCGCCGTCGTAGCTTCAATCTGTTCC
10499683 ACTGTACCGC
Statistics
Matches: 292, Mismatches: 41, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
99 89 0.30
100 178 0.61
101 25 0.09
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (100 bp):
GAAGTGAGATTCGCCGTCGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGGAAGTAAGATTCGCC
ATTGTGGCTTCAATCTTTTAAATTGCAATGTCGGG
Found at i:10499846 original size:88 final size:88
Alignment explanation
Indices: 10499707--10500200 Score: 800
Period size: 88 Copynumber: 5.6 Consensus size: 88
10499697 GAAAGCTAGA
*
10499707 TTTGCTGTCTTAGATCTGC-TCTGCTGTCAA--CAGGAAGGCAAGATCTGTTGTCTTCAACCAGC
1 TTTG-TGTCTTCGATCTGCTTC-GCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGC
*
10499769 TCCACTACAACCGAGAGAGCCAAGG
64 TCCACTACAACCGAGAGAGGCAAGG
* *
10499794 TTTTTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTT
1 TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
*
10499859 CACTACAACTGAGAGAGGCAAGG
66 CACTACAACCGAGAGAGGCAAGG
*
10499882 TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTATTGTCTTCAACCAGCTC
1 TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
*
10499947 CACTACAATC--GAGAGGCAAGG
66 CACTACAACCGAGAGAGGCAAGG
10499968 TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
1 TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
10500033 CACTACAACCGAGAGAGGCAAGG
66 CACTACAACCGAGAGAGGCAAGG
* * * *
10500056 TTTGTGTCTTCGATCTACTTCGCTGTCAATGCAAGAAGGCAAGATCTGTTGTCTTCAACCAGTTC
1 TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
*
10500121 CACTACAACCGAGAGAGGTAAGG
66 CACTACAACCGAGAGAGGCAAGG
* * *
10500144 TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAAGCAAGATATGATGTCTTCA
1 TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCA
10500201 TTGATCTGTT
Statistics
Matches: 379, Mismatches: 23, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
86 105 0.28
87 5 0.01
88 269 0.71
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (88 bp):
TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
CACTACAACCGAGAGAGGCAAGG
Found at i:10500009 original size:174 final size:173
Alignment explanation
Indices: 10499707--10500200 Score: 785
Period size: 174 Copynumber: 2.8 Consensus size: 173
10499697 GAAAGCTAGA
*
10499707 TTTGCTGTCTTAGATCTGC-TCTGCTGTCAA-CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCT
1 TTTG-TGTCTTCGATCTGCTTC-GCTGTCAAGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCT
*
10499770 CCACTACAACCGAGAGAGCCAAGGTTTTTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCA
64 CCACTACAACCGAGAG-G-CAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCA
* *
10499835 AGATCTGTTGTCTTCAACCAGCTTCACTACAACTGAGAGAGGCAAGG
127 AGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGAGAGGCAAGG
*
10499882 TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTATTGTCTTCAACCAGCTC
1 TTTGTGTCTTCGATCTGCTTCGCTGTCAA-GCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
*
10499947 CACTACAATCGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGA
65 CACTACAACCGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGA
10500012 TCTGTTGTCTTCAACCAGCTCCACTACAACCGAGAGAGGCAAGG
130 TCTGTTGTCTTCAACCAGCTCCACTACAACCGAGAGAGGCAAGG
* * *
10500056 TTTGTGTCTTCGATCTACTTCGCTGTCAATGCAAGAAGGCAAGATCTGTTGTCTTCAACCAGTTC
1 TTTGTGTCTTCGATCTGCTTCGCTGTCAA-GCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
* *
10500121 CACTACAACCGAGAGAGGTAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAAGCAA
65 CACTACAACC--GAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAA
* *
10500186 GATATGATGTCTTCA
128 GATCTGTTGTCTTCA
10500201 TTGATCTGTT
Statistics
Matches: 298, Mismatches: 16, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
174 180 0.60
175 7 0.02
176 111 0.37
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (173 bp):
TTTGTGTCTTCGATCTGCTTCGCTGTCAAGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCC
ACTACAACCGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGAT
CTGTTGTCTTCAACCAGCTCCACTACAACCGAGAGAGGCAAGG
Found at i:10501340 original size:43 final size:43
Alignment explanation
Indices: 10501275--10501376 Score: 131
Period size: 43 Copynumber: 2.4 Consensus size: 43
10501265 TGCCCCGGTC
*
10501275 TGAT-CAAAATTTGAGCTGCTCTGATCACCTCATG-CCCTAATT-
1 TGATCCAAAATTTGAGCTGCTCTGATCACCTAATGTCCC--ATTA
10501317 TGATCCAAAATTTGAG-TCGCTCTGATCACCTAATGTCCCATTA
1 TGATCCAAAATTTGAGCT-GCTCTGATCACCTAATGTCCCATTA
*
10501360 TGATCAAAAATTTGAGC
1 TGATCCAAAATTTGAGC
10501377 CGCCCTTTTC
Statistics
Matches: 53, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
42 8 0.15
43 42 0.79
44 3 0.06
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (43 bp):
TGATCCAAAATTTGAGCTGCTCTGATCACCTAATGTCCCATTA
Found at i:10505779 original size:16 final size:16
Alignment explanation
Indices: 10505758--10505798 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
10505748 AATAATGGAA
10505758 ATATATAAAAACATGT
1 ATATATAAAAACATGT
* **
10505774 ATATATGAAAGTATGT
1 ATATATAAAAACATGT
10505790 ATATATAAA
1 ATATATAAA
10505799 TTAAGGAGTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.54, C:0.02, G:0.10, T:0.34
Consensus pattern (16 bp):
ATATATAAAAACATGT
Found at i:10509153 original size:20 final size:20
Alignment explanation
Indices: 10509101--10509156 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
10509091 TTTCTGGTAC
*
10509101 TCCCTCATAATTTTTTATAA
1 TCCCTCATATTTTTTTATAA
** * *
10509121 TCTTTCTTTTTTTTTTATAA
1 TCCCTCATATTTTTTTATAA
*
10509141 TCCCTCATGTTTTTTT
1 TCCCTCATATTTTTTT
10509157 GGTATTCCTA
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.18, C:0.18, G:0.02, T:0.62
Consensus pattern (20 bp):
TCCCTCATATTTTTTTATAA
Found at i:10509191 original size:21 final size:21
Alignment explanation
Indices: 10509150--10509195 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
10509140 ATCCCTCATG
*
10509150 TTTTTTTGGTATTCCTATATAA
1 TTTTTTTGGTACTCCTATAT-A
10509172 TTTTTTT-GTACTCTCT-TATA
1 TTTTTTTGGTACTC-CTATATA
10509192 TTTT
1 TTTT
10509196 GGGTACTCGT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
20 5 0.23
21 8 0.36
22 9 0.41
ACGTcount: A:0.17, C:0.11, G:0.07, T:0.65
Consensus pattern (21 bp):
TTTTTTTGGTACTCCTATATA
Found at i:10509230 original size:20 final size:19
Alignment explanation
Indices: 10509205--10509302 Score: 81
Period size: 20 Copynumber: 4.9 Consensus size: 19
10509195 TGGGTACTCG
10509205 TATTTTTTAGTATTCCCTCA
1 TATTTTTT-GTATTCCCTCA
* *
10509225 TATTTTTTGATAATCCCTAA
1 TATTTTTTG-TATTCCCTCA
*
10509245 TATTTTTTTAGTACTT-TCTCA
1 TA-TTTTTT-GTA-TTCCCTCA
* *
10509266 TTTTTTTTGTATTTCCTCA
1 TATTTTTTGTATTCCCTCA
*
10509285 TAATTTTTTGTATGCCCT
1 T-ATTTTTTGTATTCCCT
10509303 AAGCATTTTT
Statistics
Matches: 62, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
18 2 0.03
19 9 0.15
20 37 0.60
21 12 0.19
22 2 0.03
ACGTcount: A:0.19, C:0.16, G:0.06, T:0.58
Consensus pattern (19 bp):
TATTTTTTGTATTCCCTCA
Found at i:10509268 original size:19 final size:19
Alignment explanation
Indices: 10509246--10509285 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
10509236 AATCCCTAAT
10509246 ATTTTTTTAGTACTTT-CTC
1 ATTTTTTTAGTA-TTTCCTC
*
10509265 ATTTTTTTTGTATTTCCTC
1 ATTTTTTTAGTATTTCCTC
10509284 AT
1 AT
10509286 AATTTTTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 3 0.16
19 16 0.84
ACGTcount: A:0.15, C:0.15, G:0.05, T:0.65
Consensus pattern (19 bp):
ATTTTTTTAGTATTTCCTC
Found at i:10509431 original size:19 final size:18
Alignment explanation
Indices: 10509399--10509442 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
10509389 CCTCATGTTT
*
10509399 TTTTTGGTATTCTCATATAA
1 TTTTT-GTACTCTCATAT-A
*
10509419 TTTTTGTACTCTCTTATA
1 TTTTTGTACTCTCATATA
10509437 TTTTTG
1 TTTTTG
10509443 AGTACTCGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 7 0.32
19 10 0.45
20 5 0.23
ACGTcount: A:0.18, C:0.11, G:0.09, T:0.61
Consensus pattern (18 bp):
TTTTTGTACTCTCATATA
Found at i:10509449 original size:20 final size:20
Alignment explanation
Indices: 10509399--10509449 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
10509389 CCTCATGTTT
*
10509399 TTTTTGGTATTCTCATATAA
1 TTTTTGGTACTCTCATATAA
*
10509419 TTTTT-GTACTCTCTTAT-A
1 TTTTTGGTACTCTCATATAA
10509437 TTTTTGAGTACTC
1 TTTTTG-GTACTC
10509450 GTATCTTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 6 0.22
19 10 0.37
20 11 0.41
ACGTcount: A:0.20, C:0.14, G:0.10, T:0.57
Consensus pattern (20 bp):
TTTTTGGTACTCTCATATAA
Found at i:10509871 original size:40 final size:41
Alignment explanation
Indices: 10509801--10509899 Score: 103
Period size: 40 Copynumber: 2.4 Consensus size: 41
10509791 TATTCTATTG
* **
10509801 TAATTTTTTGTACTCTTTTATGTTTTTTTTTAGT-CT-CTCA
1 TAATTTTTTGTA-TTTTTTATGTTACTTTTTAGTACTACTCA
* *
10509841 TAATTTTTTGTATTTTTTTTGTATACTTTTTAGTATTACCTCA
1 TAATTTTTTGTATTTTTTATGT-TACTTTTTAGTACTA-CTCA
*
10509884 TAATTTTTAGTATTTT
1 TAATTTTTTGTATTTT
10509900 CGCATGATTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
39 8 0.16
40 21 0.43
41 1 0.02
43 19 0.39
ACGTcount: A:0.19, C:0.09, G:0.07, T:0.65
Consensus pattern (41 bp):
TAATTTTTTGTATTTTTTATGTTACTTTTTAGTACTACTCA
Found at i:10509909 original size:20 final size:20
Alignment explanation
Indices: 10509867--10509911 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
10509857 TTTTGTATAC
*
10509867 TTTTTAGTATTACCTCATAA
1 TTTTTAGTATTACCGCATAA
** *
10509887 TTTTTAGTATTTTCGCATGA
1 TTTTTAGTATTACCGCATAA
10509907 TTTTT
1 TTTTT
10509912 TTTACTTTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.22, C:0.11, G:0.09, T:0.58
Consensus pattern (20 bp):
TTTTTAGTATTACCGCATAA
Found at i:10510023 original size:14 final size:13
Alignment explanation
Indices: 10509981--10510032 Score: 59
Period size: 14 Copynumber: 3.8 Consensus size: 13
10509971 TACATATTTT
*
10509981 TTATATTTTTTCC
1 TTATATTTTATCC
*
10509994 TTATATTGGTATCC
1 TTATATT-TTATCC
10510008 TTATATTTTATCCC
1 TTATATTTTAT-CC
*
10510022 TTATAATTTAT
1 TTATATTTTAT
10510033 AATTTTTGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
13 10 0.30
14 23 0.70
ACGTcount: A:0.23, C:0.13, G:0.04, T:0.60
Consensus pattern (13 bp):
TTATATTTTATCC
Found at i:10510849 original size:19 final size:20
Alignment explanation
Indices: 10510802--10510849 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 20
10510792 ATCAAAAGGG
*
10510802 TACCAAAAAATTATGAGAGAA
1 TACCAAAAAA-TATGAGAAAA
* *
10510823 TA-TAAAAAAAATGAGAAAA
1 TACCAAAAAATATGAGAAAA
10510842 TACCAAAA
1 TACCAAAA
10510850 TACATAAAGA
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
19 10 0.45
20 10 0.45
21 2 0.09
ACGTcount: A:0.65, C:0.08, G:0.10, T:0.17
Consensus pattern (20 bp):
TACCAAAAAATATGAGAAAA
Found at i:10511770 original size:2 final size:2
Alignment explanation
Indices: 10511763--10511801 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
10511753 ATACTATGAT
10511763 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
10511802 TTTGATGTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:10518451 original size:28 final size:27
Alignment explanation
Indices: 10518411--10518486 Score: 107
Period size: 28 Copynumber: 2.7 Consensus size: 27
10518401 TTTATTCAGT
* *
10518411 AAAACTCCTATTTTATTGGGATTGAATC
1 AAAACTCC-ATTTTATTGGGATTAAATA
10518439 AAAACTCTCATTTTATTGGGATTAAATA
1 AAAACTC-CATTTTATTGGGATTAAATA
10518467 AAAACTCCCATTTTATTGGG
1 AAAACT-CCATTTTATTGGG
10518487 GTTCATGATT
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
28 42 0.95
29 2 0.05
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.38
Consensus pattern (27 bp):
AAAACTCCATTTTATTGGGATTAAATA
Found at i:10522455 original size:25 final size:25
Alignment explanation
Indices: 10522425--10522492 Score: 120
Period size: 25 Copynumber: 2.8 Consensus size: 25
10522415 TAAGCCCTCT
10522425 CGAGCTTCCCGTTATATAGTTCTTG
1 CGAGCTTCCCGTTATATAGTTCTTG
*
10522450 CGAGCTTCCCGTTATATGGTTCTTG
1 CGAGCTTCCCGTTATATAGTTCTTG
10522475 CGAGCTTCCCGTTA-ATAG
1 CGAGCTTCCCGTTATATAG
10522493 CTTTTAAGAG
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
24 3 0.07
25 38 0.93
ACGTcount: A:0.16, C:0.25, G:0.22, T:0.37
Consensus pattern (25 bp):
CGAGCTTCCCGTTATATAGTTCTTG
Found at i:10522710 original size:25 final size:25
Alignment explanation
Indices: 10522556--10522710 Score: 99
Period size: 26 Copynumber: 6.2 Consensus size: 25
10522546 CAGCTCTTAT
*
10522556 GAGCGTCCCG-TTATATGGCTCTTCG
1 GAGCTTCCCGATTA-ATGGCTCTTCG
* * *
10522581 TGAGCTTTCCGATTAAAGGCTCTTTG
1 -GAGCTTCCCGATTAATGGCTCTTCG
*
10522607 TGAGCTTCCTGATTAATGGCTCTTCG
1 -GAGCTTCCCGATTAATGGCTCTTCG
*
10522633 GAGCTTCCCGA-T-ATGACTCGCTT--
1 GAGCTTCCCGATTAATGGCT--CTTCG
* * *
10522656 GAACTTCCCGA-TATATAGCT-ATCTG
1 GAGCTTCCCGATTA-ATGGCTCTTC-G
* *
10522681 AAGCTTCTCGATTAATGGCTCTTCG
1 GAGCTTCCCGATTAATGGCTCTTCG
10522706 GAGCT
1 GAGCT
10522711 ACCTGTTATT
Statistics
Matches: 99, Mismatches: 20, Indels: 21
0.71 0.14 0.15
Matches are distributed among these distances:
22 1 0.01
23 16 0.16
24 1 0.01
25 35 0.35
26 43 0.43
27 3 0.03
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.34
Consensus pattern (25 bp):
GAGCTTCCCGATTAATGGCTCTTCG
Found at i:10522758 original size:48 final size:49
Alignment explanation
Indices: 10522706--10522808 Score: 129
Period size: 48 Copynumber: 2.1 Consensus size: 49
10522696 TGGCTCTTCG
* * *
10522706 GAGCTACCTGTTATTT-TCTCGCATGAGCTTCCCG-ACTATGGCTCTCAT
1 GAGCTACCTGTTATTTAGCTCGCATAAGCTTCCCGTAC-ATGGCTCACAT
* *
10522754 GAGCTTCCTGTTATTTAGCTCGGATAAGCTTCCCGTTACATGGCTCACAT
1 GAGCTACCTGTTATTTAGCTCGCATAAGCTTCCCG-TACATGGCTCACAT
10522804 GAGCT
1 GAGCT
10522809 TCCCATTATT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
48 15 0.32
49 15 0.32
50 15 0.32
51 2 0.04
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.34
Consensus pattern (49 bp):
GAGCTACCTGTTATTTAGCTCGCATAAGCTTCCCGTACATGGCTCACAT
Found at i:10522759 original size:73 final size:72
Alignment explanation
Indices: 10522607--10522763 Score: 174
Period size: 73 Copynumber: 2.2 Consensus size: 72
10522597 AGGCTCTTTG
* *
10522607 TGAGCTTCCTGATTAATGGCTCTTCGGAGCTTCCCGATATGACTCGCTTGAACTTCCCGATATAT
1 TGAGCTTCCTGATTAATGGCTCTTCGGAGCTACCCGATATGACTCGCATGAACTTCCCGATATAT
10522672 AGCTATC
66 AGCTATC
* * ** * *
10522679 TGAAGCTT-CTCGATTAATGGCTCTTCGGAGCTACCTGTTATTTTCTCGCATGAGCTTCCCGA-C
1 TG-AGCTTCCT-GATTAATGGCTCTTCGGAGCTACCCGATA-TGACTCGCATGAACTTCCCGATA
* *
10522742 TATGGCTCTC
63 TATAGCTATC
10522752 ATGAGCTTCCTG
1 -TGAGCTTCCTG
10522764 TTATTTAGCT
Statistics
Matches: 70, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
72 4 0.06
73 45 0.64
74 21 0.30
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.34
Consensus pattern (72 bp):
TGAGCTTCCTGATTAATGGCTCTTCGGAGCTACCCGATATGACTCGCATGAACTTCCCGATATAT
AGCTATC
Found at i:10522806 original size:50 final size:48
Alignment explanation
Indices: 10522706--10522825 Score: 134
Period size: 50 Copynumber: 2.4 Consensus size: 48
10522696 TGGCTCTTCG
* * * *
10522706 GAGCTACCTGTTATTTTCTCGCATGAGCTTCCCGACTATGGCTCTCAT
1 GAGCTTCCTGTTATTTGCTCGCATAAGCTTCCCGACTATGGCTCACAT
*
10522754 GAGCTTCCTGTTATTTAGCTCGGATAAGCTTCCCGTTAC-ATGGCTCACAT
1 GAGCTTCCTGTTATTT-GCTCGCATAAGCTTCCCG--ACTATGGCTCACAT
**
10522804 GAGCTTCCCATTATTTGGCTCG
1 GAGCTTCCTGTTATTT-GCTCG
10522826 AGAGTGTGCT
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
48 15 0.25
49 15 0.25
50 29 0.48
51 2 0.03
ACGTcount: A:0.17, C:0.28, G:0.20, T:0.35
Consensus pattern (48 bp):
GAGCTTCCTGTTATTTGCTCGCATAAGCTTCCCGACTATGGCTCACAT
Found at i:10522808 original size:25 final size:25
Alignment explanation
Indices: 10522727--10522812 Score: 77
Period size: 25 Copynumber: 3.5 Consensus size: 25
10522717 TATTTTCTCG
*
10522727 CATGAGCTTCCCG--ACTATGGCTCT
1 CATGAGCTTCCCGTTAC-ATGGCTCA
* ** * *
10522751 CATGAGCTTCCTGTTATTTAGCTCG
1 CATGAGCTTCCCGTTACATGGCTCA
* *
10522776 GATAAGCTTCCCGTTACATGGCTCA
1 CATGAGCTTCCCGTTACATGGCTCA
10522801 CATGAGCTTCCC
1 CATGAGCTTCCC
10522813 ATTATTTGGC
Statistics
Matches: 46, Mismatches: 14, Indels: 3
0.73 0.22 0.05
Matches are distributed among these distances:
24 12 0.26
25 33 0.72
26 1 0.02
ACGTcount: A:0.19, C:0.30, G:0.20, T:0.31
Consensus pattern (25 bp):
CATGAGCTTCCCGTTACATGGCTCA
Found at i:10522822 original size:25 final size:25
Alignment explanation
Indices: 10522727--10522824 Score: 74
Period size: 25 Copynumber: 4.0 Consensus size: 25
10522717 TATTTTCTCG
* *
10522727 CATGAGCTTCCCGACTA--TGGCTCT
1 CATGAGCTTCCC-ATTATTTGGCTCA
** * *
10522751 CATGAGCTTCCTGTTATTTAGCTCG
1 CATGAGCTTCCCATTATTTGGCTCA
* * * **
10522776 GATAAGCTTCCCGTTACATGGCTCA
1 CATGAGCTTCCCATTATTTGGCTCA
10522801 CATGAGCTTCCCATTATTTGGCTC
1 CATGAGCTTCCCATTATTTGGCTC
10522825 GAGAGTGTGC
Statistics
Matches: 55, Mismatches: 17, Indels: 3
0.73 0.23 0.04
Matches are distributed among these distances:
23 2 0.04
24 11 0.20
25 42 0.76
ACGTcount: A:0.18, C:0.29, G:0.19, T:0.34
Consensus pattern (25 bp):
CATGAGCTTCCCATTATTTGGCTCA
Found at i:10529854 original size:288 final size:287
Alignment explanation
Indices: 10529328--10529906 Score: 953
Period size: 288 Copynumber: 2.0 Consensus size: 287
10529318 GATTGGAGTT
* *
10529328 AAGTGAGTTTATAAGATTAAATTTGATGAAAACAAAAAAGTGAATGAACACAAGGCCAAGCTTGT
1 AAGTAAGTTTATAAGATTAAATTTGATGAAAACAAAAAAGAGAATGAACACAAGGCCAAGCTTGT
*
10529393 AGTGAAGGAGTATGCATAAAAACATGGGGTGGATGACATAGAAGTTTTTACCCGTGACATGTAAA
66 AGTGAAGGAGTATGCATAAAAACATGGGCTGGATGACATAGAAGTTTTTACCCGTGACATGTAAA
* *
10529458 TAGACAATTCAATTAGTGATAGCACTTGCAACTCAAAGGGGATGGTCCATATACTAACTAGACAA
131 TAGACAATTCAATTAGTGATACCACTTGCAACTCAAAAGGGATGGTCCATATACTAACTAGACAA
*
10529523 GTCATCATTTTTTACATGGTGAGTTGCATGAAATGTCTTTGTGGAACAATCTTGTGGTTATGTGT
196 GTCAGCATTTTTTACATGGTGAGTTGCATGAAATGTCTTTGTGGAACAATCTTGTGGTTATGTGT
10529588 AAAA-GGGAGGTGAGCAAAAGGATTAC
261 AAAAGGGGAGGTGAGCAAAAGGATTAC
**
10529614 AAGTAAGTTTATAAGATTAAATTTGATGAAAATGAAAAAGAGAATGAACACAAGGCCAAGCTTGT
1 AAGTAAGTTTATAAGATTAAATTTGATGAAAACAAAAAAGAGAATGAACACAAGGCCAAGCTTGT
* * * * *
10529679 ATTGAAGGGGTATGCATAACAACATGGGCTGGATGACGTAGAATTTTTTACACCTGTGACATGTA
66 AGTGAAGGAGTATGCATAAAAACATGGGCTGGATGACATAGAAGTTTTTAC-CC-GTGACATGTA
* *
10529744 TATAGACAATTCAATTAGTGATACCACTTGCATCTCAAAAGGGATGGTCCATATACTAACTAGAC
129 AATAGACAATTCAATTAGTGATACCACTTGCAACTCAAAAGGGATGGTCCATATACTAACTAGAC
* * *
10529809 AAGTTAGCATTTTTTATATGGTGAGTTGCATGAAATGTTTTTGTGGAACAATCTTGTGGTTATGT
194 AAGTCAGCATTTTTTACATGGTGAGTTGCATGAAATGTCTTTGTGGAACAATCTTGTGGTTATGT
* *
10529874 GTAAAAGGGGGGGTGAGCAAAATGATTAC
259 GTAAAAGGGGAGGTGAGCAAAAGGATTAC
10529903 AAGT
1 AAGT
10529907 TAAAGAAGGC
Statistics
Matches: 270, Mismatches: 20, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
286 106 0.39
287 2 0.01
288 138 0.51
289 24 0.09
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.29
Consensus pattern (287 bp):
AAGTAAGTTTATAAGATTAAATTTGATGAAAACAAAAAAGAGAATGAACACAAGGCCAAGCTTGT
AGTGAAGGAGTATGCATAAAAACATGGGCTGGATGACATAGAAGTTTTTACCCGTGACATGTAAA
TAGACAATTCAATTAGTGATACCACTTGCAACTCAAAAGGGATGGTCCATATACTAACTAGACAA
GTCAGCATTTTTTACATGGTGAGTTGCATGAAATGTCTTTGTGGAACAATCTTGTGGTTATGTGT
AAAAGGGGAGGTGAGCAAAAGGATTAC
Found at i:10530960 original size:47 final size:47
Alignment explanation
Indices: 10530872--10530961 Score: 128
Period size: 47 Copynumber: 1.9 Consensus size: 47
10530862 CTCACACTTT
* *
10530872 GCTTACTGTCTTCAACAGGCTCACAACTTTAATAGGCTCGCACTCTG
1 GCTTACTGTCTTCAACAGGCTCACAACTTTAACAGGATCGCACTCTG
* *
10530919 GCTTACTGTCTTCAACAGGCTCGC-ACTTTTACAGGGATCGCAC
1 GCTTACTGTCTTCAACAGGCTCACAACTTTAACA-GGATCGCAC
10530962 CTTTACAGCT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
46 7 0.18
47 31 0.82
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (47 bp):
GCTTACTGTCTTCAACAGGCTCACAACTTTAACAGGATCGCACTCTG
Found at i:10531319 original size:18 final size:18
Alignment explanation
Indices: 10531291--10531335 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
10531281 CTAAGCTCAC
*
10531291 AGCTTGCACATCTCGCTG
1 AGCTCGCACATCTCGCTG
* *
10531309 AGTTCGCACATCTCGTTG
1 AGCTCGCACATCTCGCTG
10531327 AGCTCGCAC
1 AGCTCGCAC
10531336 CACTTGATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.18, C:0.33, G:0.22, T:0.27
Consensus pattern (18 bp):
AGCTCGCACATCTCGCTG
Found at i:10534690 original size:42 final size:42
Alignment explanation
Indices: 10534638--10534756 Score: 166
Period size: 42 Copynumber: 2.8 Consensus size: 42
10534628 GTTTACAAAT
10534638 AAAAACGCCGCTAAAAACCATGTTCTTTAGCGGCACTTAGAA
1 AAAAACGCCGCTAAAAACCATGTTCTTTAGCGGCACTTAGAA
* * * * *
10534680 AAAAATGCCGCTAAATACCATGTTCTTTAGAGGCGCTTAGAG
1 AAAAACGCCGCTAAAAACCATGTTCTTTAGCGGCACTTAGAA
* * *
10534722 AAAAACACCGCTAAAGATCATGTTCTTTAGCGGCA
1 AAAAACGCCGCTAAAAACCATGTTCTTTAGCGGCA
10534757 TTTTTTATTA
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 66 1.00
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24
Consensus pattern (42 bp):
AAAAACGCCGCTAAAAACCATGTTCTTTAGCGGCACTTAGAA
Found at i:10534778 original size:42 final size:42
Alignment explanation
Indices: 10534729--10535055 Score: 451
Period size: 42 Copynumber: 7.8 Consensus size: 42
10534719 GAGAAAAACA
* * *
10534729 CCGCTAAAGATCATGTTCTTTAGCGGCATTTTTTAT-TAAGCG
1 CCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTT-TCTAAGCG
* * *
10534771 CCTCTAAAGAACATGGTCTTTAGCGGCATTTTTTTCTAAGCA
1 CCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGCG
*
10534813 CCTCTAAAGAACATGGTCTTTAGCGGCGTTTCTTTT-TAAGCG
1 CCGCTAAAGAACATGGTCTTTAGCGGCGTTT-TTTTCTAAGCG
* *
10534855 CCACTAAAGAACATGGTCTATAGCGGCGTTTTTTTCTAAGCG
1 CCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGCG
* *
10534897 CCGCTAAAGAACATGGTCTTTAGCGGCGTTTCTTTCTAAGTG
1 CCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGCG
*
10534939 CCGCTAAAGAACATGGTCTCTAGCGGCGTTTTTTTCTAAGCG
1 CCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGCG
** * * *
10534981 CCGCTAAAGAACATTATCTTTAGCAGCATTTTTTTCAAAGCG
1 CCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGCG
* *
10535023 CCGCTAAAGAACATGTTCTTTAACGGCGTTTTT
1 CCGCTAAAGAACATGGTCTTTAGCGGCGTTTTT
10535056 ATACAAAAAC
Statistics
Matches: 256, Mismatches: 26, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
41 5 0.02
42 247 0.96
43 4 0.02
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.34
Consensus pattern (42 bp):
CCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGCG
Found at i:10540925 original size:9 final size:9
Alignment explanation
Indices: 10540911--10541376 Score: 339
Period size: 9 Copynumber: 50.8 Consensus size: 9
10540901 TTTTTATGTA
10540911 TTATGTAAG
1 TTATGTAAG
10540920 TTATGTACTAAG
1 TTATG---TAAG
* *
10540932 TTCTGT-AC
1 TTATGTAAG
10540940 T-ATGTAAG
1 TTATGTAAG
10540948 TTATGTAAG
1 TTATGTAAG
*
10540957 TTGTGT-A-
1 TTATGTAAG
*
10540964 TTATGTGAG
1 TTATGTAAG
10540973 TTATGTAAG
1 TTATGTAAG
10540982 TTATGTAAG
1 TTATGTAAG
* *
10540991 TTATTTAAT
1 TTATGTAAG
10541000 TTATGTAAG
1 TTATGTAAG
*
10541009 TTTACATATAAG
1 -TT--ATGTAAG
*
10541021 TTATGTAGG
1 TTATGTAAG
*
10541030 CTATGT-A-
1 TTATGTAAG
* *
10541037 TTATCTAAA
1 TTATGTAAG
*
10541046 TAATGTAAG
1 TTATGTAAG
*
10541055 TTA-GGAAGG
1 TTATGTAA-G
10541064 TTATGTAAG
1 TTATGTAAG
* *
10541073 TTATTTAGAAAAAA
1 TTA--T-G--TAAG
10541087 TTATGTAAG
1 TTATGTAAG
10541096 TTATGTACTAAG
1 TTATG---TAAG
10541108 TTATGT-A-
1 TTATGTAAG
*
10541115 TTATGTAAA
1 TTATGTAAG
*
10541124 TAATGTAAG
1 TTATGTAAG
10541133 TTATGTAAG
1 TTATGTAAG
10541142 TTATGTAAG
1 TTATGTAAG
*
10541151 TTATTTAAG
1 TTATGTAAG
10541160 TTATGTAAG
1 TTATGTAAG
* *
10541169 TTATTTAAT
1 TTATGTAAG
10541178 TTATGTAAG
1 TTATGTAAG
10541187 TTATGTAAG
1 TTATGTAAG
*
10541196 TTATTTAAG
1 TTATGTAAG
* *
10541205 TTATTTAAT
1 TTATGTAAG
10541214 TTATGTAAG
1 TTATGTAAG
10541223 TTATGTAAG
1 TTATGTAAG
* **
10541232 TTATTTATT
1 TTATGTAAG
10541241 TTATGTAAG
1 TTATGTAAG
* *
10541250 TTATTTAGAAAAAA
1 TTA--T-G--TAAG
10541264 TTATGTAAG
1 TTATGTAAG
10541273 TTATGTACTAAG
1 TTATG---TAAG
10541285 TTATGT-A-
1 TTATGTAAG
*
10541292 TTATGTAAA
1 TTATGTAAG
*
10541301 TAATGTAAG
1 TTATGTAAG
*
10541310 TTA-GGAAG
1 TTATGTAAG
10541318 TTATGT-A-
1 TTATGTAAG
10541325 TTATGTAAG
1 TTATGTAAG
*
10541334 TTATTTAAG
1 TTATGTAAG
10541343 TTATGTAAG
1 TTATGTAAG
10541352 TTATGTAAG
1 TTATGTAAG
10541361 TTATGTAAG
1 TTATGTAAG
10541370 TTATGTA
1 TTATGTA
10541377 GGCCATGTAT
Statistics
Matches: 362, Mismatches: 58, Indels: 74
0.73 0.12 0.15
Matches are distributed among these distances:
7 30 0.08
8 23 0.06
9 252 0.70
10 5 0.01
11 6 0.02
12 36 0.10
14 10 0.03
ACGTcount: A:0.35, C:0.02, G:0.18, T:0.46
Consensus pattern (9 bp):
TTATGTAAG
Found at i:10541384 original size:18 final size:18
Alignment explanation
Indices: 10541327--10541385 Score: 64
Period size: 18 Copynumber: 3.3 Consensus size: 18
10541317 GTTATGTATT
* **
10541327 ATGTAAGTTATTTAAGTT
1 ATGTAAGTTATGTAAGCC
**
10541345 ATGTAAGTTATGTAAGTT
1 ATGTAAGTTATGTAAGCC
*
10541363 ATGTAAGTTATGTAGGCC
1 ATGTAAGTTATGTAAGCC
10541381 ATGTA
1 ATGTA
10541386 TTATGTTATT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.32, C:0.03, G:0.22, T:0.42
Consensus pattern (18 bp):
ATGTAAGTTATGTAAGCC
Found at i:10541436 original size:33 final size:34
Alignment explanation
Indices: 10541394--10541466 Score: 96
Period size: 35 Copynumber: 2.1 Consensus size: 34
10541384 TATTATGTTA
*
10541394 TTATATAAGTTATG-CAAGTT-TATATATTGTATG
1 TTATTTAAGTTATGACAAGTTAT-TATATTGTATG
*
10541427 TTATTTAAGTTATGTATAAGTTATTATATTGTATG
1 TTATTTAAGTTATG-ACAAGTTATTATATTGTATG
10541462 TTATT
1 TTATT
10541467 ATATAAGTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
33 13 0.37
35 21 0.60
36 1 0.03
ACGTcount: A:0.32, C:0.01, G:0.14, T:0.53
Consensus pattern (34 bp):
TTATTTAAGTTATGACAAGTTATTATATTGTATG
Found at i:10541476 original size:12 final size:12
Alignment explanation
Indices: 10541427--10541485 Score: 57
Period size: 12 Copynumber: 4.8 Consensus size: 12
10541417 ATATTGTATG
*
10541427 TTATTTAAGTTA
1 TTATATAAGTTA
*
10541439 -TGTATAAGTTA
1 TTATATAAGTTA
*
10541450 TTATATTGTATGTTA
1 TTATA---TAAGTTA
10541465 TTATATAAGTTA
1 TTATATAAGTTA
10541477 TTATATAAG
1 TTATATAAG
10541486 ATTCTATATA
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
11 9 0.24
12 18 0.47
15 11 0.29
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.53
Consensus pattern (12 bp):
TTATATAAGTTA
Found at i:10541639 original size:17 final size:16
Alignment explanation
Indices: 10541613--10541654 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
10541603 TAAATTTTGA
*
10541613 AAAAAT-TATAGATTTT
1 AAAAATGTATA-ATATT
10541629 AAAAATGTAT-ATATT
1 AAAAATGTATAATATT
10541644 AAAAATGTATA
1 AAAAATGTATA
10541655 TAAATATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 14 0.61
16 6 0.26
17 3 0.13
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (16 bp):
AAAAATGTATAATATT
Found at i:10541645 original size:15 final size:15
Alignment explanation
Indices: 10541627--10541656 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
10541617 ATTATAGATT
10541627 TTAAAAATGTATATA
1 TTAAAAATGTATATA
10541642 TTAAAAATGTATATA
1 TTAAAAATGTATATA
10541657 AATATTTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (15 bp):
TTAAAAATGTATATA
Found at i:10541903 original size:23 final size:23
Alignment explanation
Indices: 10541859--10541903 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
10541849 ATAAAATTGG
* *
10541859 AATATAAGTTATATGTCCATATT
1 AATATAAGTTATATATCAATATT
* *
10541882 AATATATGTTATATATTAATAT
1 AATATAAGTTATATATCAATAT
10541904 ATGTCCCAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.42, C:0.04, G:0.07, T:0.47
Consensus pattern (23 bp):
AATATAAGTTATATATCAATATT
Found at i:10545140 original size:7 final size:7
Alignment explanation
Indices: 10545130--10545169 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
10545120 CATAAATTCT
10545130 AAACCCC
1 AAACCCC
10545137 AAACCCC
1 AAACCCC
**
10545144 AAAAACC
1 AAACCCC
10545151 AAACCCC
1 AAACCCC
*
10545158 AAACCCT
1 AAACCCC
10545165 AAACC
1 AAACC
10545170 TTAAACCCTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.50, C:0.47, G:0.00, T:0.03
Consensus pattern (7 bp):
AAACCCC
Found at i:10545168 original size:14 final size:14
Alignment explanation
Indices: 10545130--10545195 Score: 62
Period size: 14 Copynumber: 4.7 Consensus size: 14
10545120 CATAAATTCT
*
10545130 AAACCCCAAACCCC
1 AAACCCTAAACCCC
*
10545144 AAAAACC-AAACCCC
1 -AAACCCTAAACCCC
**
10545158 AAACCCTAAACCTT
1 AAACCCTAAACCCC
* *
10545172 AAACCCTAAATCTC
1 AAACCCTAAACCCC
10545186 AAACCCTAAA
1 AAACCCTAAA
10545196 ATTCAAAACC
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
13 5 0.11
14 34 0.77
15 5 0.11
ACGTcount: A:0.48, C:0.41, G:0.00, T:0.11
Consensus pattern (14 bp):
AAACCCTAAACCCC
Found at i:10545174 original size:7 final size:7
Alignment explanation
Indices: 10545128--10545195 Score: 50
Period size: 7 Copynumber: 9.7 Consensus size: 7
10545118 ATCATAAATT
10545128 CTAAACC
1 CTAAACC
*
10545135 CCAAACCC
1 CTAAA-CC
* *
10545143 CAAAAAC
1 CTAAACC
10545150 C-AAACC
1 CTAAACC
*
10545156 CCAAACC
1 CTAAACC
10545163 CTAAACC
1 CTAAACC
*
10545170 TTAAACC
1 CTAAACC
*
10545177 CTAAA-T
1 CTAAACC
10545183 CTCAAACC
1 CT-AAACC
10545191 CTAAA
1 CTAAA
10545196 ATTCAAAACC
Statistics
Matches: 48, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
6 7 0.15
7 33 0.69
8 8 0.17
ACGTcount: A:0.47, C:0.41, G:0.00, T:0.12
Consensus pattern (7 bp):
CTAAACC
Found at i:10545201 original size:14 final size:14
Alignment explanation
Indices: 10545157--10545202 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
10545147 AACCAAACCC
*
10545157 CAAACCCTAAACCTT
1 CAAACCCTAAA-ATT
10545172 -AAACCCT-AAATCT
1 CAAACCCTAAAAT-T
10545185 CAAACCCTAAAATT
1 CAAACCCTAAAATT
10545199 CAAA
1 CAAA
10545203 ACCAAAAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
12 1 0.04
13 3 0.11
14 19 0.70
15 4 0.15
ACGTcount: A:0.48, C:0.33, G:0.00, T:0.20
Consensus pattern (14 bp):
CAAACCCTAAAATT
Found at i:10546399 original size:72 final size:73
Alignment explanation
Indices: 10546318--10546454 Score: 206
Period size: 72 Copynumber: 1.9 Consensus size: 73
10546308 TTTATTGTCA
* * * * *
10546318 AGCGCCACTAATTCTTATAC-ACCTCAAGACTGAATGCTGCGTTTTGGTTAAGAT-TTTTGCAGC
1 AGCGCCACTAATTCTAAT-CTACCTCAAGACTAAACGCTGCGTTTTAGATAAGATATTTTGCAGC
10546381 GTTTTTCCT
65 GTTTTTCCT
10546390 AGCGCCACTAATTCTAATCTACCTCAAGACTAAACGCTGCGTTTTAGATAAGATATTTTGCAGCG
1 AGCGCCACTAATTCTAATCTACCTCAAGACTAAACGCTGCGTTTTAGATAAGATATTTTGCAGCG
10546455 CGTTCAGACA
Statistics
Matches: 58, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
71 1 0.02
72 47 0.81
73 10 0.17
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.34
Consensus pattern (73 bp):
AGCGCCACTAATTCTAATCTACCTCAAGACTAAACGCTGCGTTTTAGATAAGATATTTTGCAGCG
TTTTTCCT
Found at i:10546590 original size:114 final size:113
Alignment explanation
Indices: 10546390--10546602 Score: 268
Period size: 114 Copynumber: 1.9 Consensus size: 113
10546380 CGTTTTTCCT
* * * * *
10546390 AGCGCCACTAATTCTAATCTACCTCAAGACTAAACGCTGCGTTTTAGATAAGATATTTTGCAGCG
1 AGCGCCACTAACTCTAATATACCTCAAGACCAAACGATGCATTTTAGATAAGATATTTTGCAGCG
*
10546455 CGTTCAGACAGACGCCGCTAATACTG-TGCTTTAGCGGCATGTTCTCCAA
66 CGTT-AGACAAACGCCGCTAATACTGCT-CTTTAGCGGCATGTTCTCCAA
* * * **
10546504 AGCGCCACTAACTCTAATATACCTCAAGACCAAACGATGCATTTTGGTTAAGATCTTTTGTGGCG
1 AGCGCCACTAACTCTAATATACCTCAAGACCAAACGATGCATTTTAGATAAGATATTTTGCAGCG
*
10546569 CTTGTT-GTCAAACGCCGCTAATACTGCTCTTTAG
66 C--GTTAGACAAACGCCGCTAATACTGCTCTTTAG
10546603 TTTTAATATA
Statistics
Matches: 84, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
114 80 0.95
115 1 0.01
116 3 0.04
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.30
Consensus pattern (113 bp):
AGCGCCACTAACTCTAATATACCTCAAGACCAAACGATGCATTTTAGATAAGATATTTTGCAGCG
CGTTAGACAAACGCCGCTAATACTGCTCTTTAGCGGCATGTTCTCCAA
Found at i:10546670 original size:88 final size:88
Alignment explanation
Indices: 10546518--10546678 Score: 207
Period size: 88 Copynumber: 1.8 Consensus size: 88
10546508 CCACTAACTC
* * * ****
10546518 TAATATACCTCAAGACCAAACGATGCATTTTGGTTAAGATCTTTTGTGGCGCTTGTTGTCAAACG
1 TAATATACCTCAAAACCAAACGATGCATTTTGGTTAAGATATTTTGCGGCGCTTCAAATCAAACG
*
10546583 CCGCTAATACTGCTCTTTAGTTT
66 CCACTAATACTGCTCTTTAGTTT
* * *
10546606 TAATATACCTCAAAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGCGCTTACAAAT-AAAC
1 TAATATACCTCAAAACCAAACGATGCATTTTGGTTAAGATATTTTGCGGCGCTT-CAAATCAAAC
10546670 GCCACTAAT
65 GCCACTAAT
10546679 GATATTCTTT
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
88 60 0.98
89 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (88 bp):
TAATATACCTCAAAACCAAACGATGCATTTTGGTTAAGATATTTTGCGGCGCTTCAAATCAAACG
CCACTAATACTGCTCTTTAGTTT
Found at i:10550015 original size:32 final size:32
Alignment explanation
Indices: 10549974--10550038 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
10549964 TCAGGGAGAT
*
10549974 AGGATTTGCTTTCTTGGGTCTGCTCCACTGCA
1 AGGATTTGCTTTCTTGGGTCTACTCCACTGCA
10550006 AGGATTTGCTTTCTTGGGTCTACTCCACTGCA
1 AGGATTTGCTTTCTTGGGTCTACTCCACTGCA
10550038 A
1 A
10550039 CTTCAGGGAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.15, C:0.25, G:0.23, T:0.37
Consensus pattern (32 bp):
AGGATTTGCTTTCTTGGGTCTACTCCACTGCA
Found at i:10550295 original size:129 final size:129
Alignment explanation
Indices: 10550010--10550312 Score: 378
Period size: 129 Copynumber: 2.3 Consensus size: 129
10550000 ACTGCAAGGA
* ** * * *
10550010 TTTGCTTTCTTGGGTCTACTCCACTGCAACTTCAGGGAGATAAGACCCGATGCGATCTGCTCTCT
1 TTTGCGTTCTTGAATCTGCTCCACTGCAACTTCAGGGAGATAAGACCCGATGCGATATACTCTCT
* * * *
10550075 GCAACTTCAGAGAGATAAGATTTGAGATTTTAATCCGCTTCACAGCAATTTCAGGGAGATAGGG
66 GCAACTTCAGAGAGATAAGATCTGAGATTTTAATCCGCTCCACAGCAACTTCAGAGAGATAGGG
* ** * *
10550139 TTTGCTTTCTTGGGTCTGCTCCACTGCAACTTTAGGGAGATAAGACCCGATGTGATATACTCTAC
1 TTTGCGTTCTTGAATCTGCTCCACTGCAACTTCAGGGAGATAAGACCCGATGCGATATACTCT-C
** * *
10550204 TGCAACTTCAGAGAGATAATCTCTGTGATTTTAATCCGCTCCACTGCAACTTCAGAGAGATAGGA
65 TGCAACTTCAGAGAGATAAGATCTGAGATTTTAATCCGCTCCACAGCAACTTCAGAGAGATAGG-
*
10550269 T
129 G
10550270 TATTG-GTT-TT-AATCTGCTCCACTGCAACTTCAGGGAGATAAGA
1 T-TTGCGTTCTTGAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
10550313 TTCGCCATCT
Statistics
Matches: 153, Mismatches: 18, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
129 88 0.58
130 59 0.39
131 3 0.02
132 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (129 bp):
TTTGCGTTCTTGAATCTGCTCCACTGCAACTTCAGGGAGATAAGACCCGATGCGATATACTCTCT
GCAACTTCAGAGAGATAAGATCTGAGATTTTAATCCGCTCCACAGCAACTTCAGAGAGATAGGG
Found at i:10550346 original size:45 final size:44
Alignment explanation
Indices: 10550023--10550578 Score: 205
Period size: 44 Copynumber: 12.8 Consensus size: 44
10550013 GCTTTCTTGG
* ** * *
10550023 GTCTACTCCACTGCAACTTCAGGGAGATAAGACCCGA-TGC-GA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATTACTTA
* * *
10550065 -TCTGCT-CTCTGCAACTTCAGAGAGATAAGATTTGAGATT--TTA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT--GATTACTTA
* * * * * * ** * * *
10550107 ATCCGCTTCACAGCAATTTCAGGGAGATAGGGTTTGCTTTCTTGG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATTACTT-A
* ** * *
10550152 GTCTGCTCCACTGCAACTTTAGGGAGATAAGACCCGA-T-GTGA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATTACTTA
* * * * **
10550194 -TATACTCTACTGCAACTTCAGAGAGATAATCTCTGTGATT--TTA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAA-GACT-TGATTACTTA
* * * * **
10550237 ATCCGCTCCACTGCAACTTCAGAGAGATAGGA-TT-ATTGGTTTTA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATT--ACTTA
*
10550281 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTCGCCA-T-CTTCA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-G--ATTACTT-A
*
10550326 GTCTG-TCTTACTGCAACTTCA-GGAGGATAAGACTTGATTACTTA
1 GTCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTGATTACTTA
** * * *
10550370 GTCTGCTCCACTGCAACTTCAGGGAGATAACTCTAGA-TGC-GA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATTACTTA
* * * *
10550412 -TCTGCT-CTCTGTAACTTCAGAGAGATAAGA-TCTG-TTATTTTA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACT-TGATTA-CTTA
* ** ** *
10550454 ATCCACTCCACTATAACTTCAGGGAGATAGGA-TT-ATTAGCTTTA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATTA-C-TTA
* * *
10550498 ATCTGCTCCACTGCAACTTCAGGGAGATAGGA-TT-ATTGGCTTCA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATT-ACTT-A
** * *
10550542 AACTGCTCCACTGTAACTTCAGGGAGATAAGATTTGA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGA
10550579 CATCTTCAAT
Statistics
Matches: 388, Mismatches: 85, Indels: 78
0.70 0.15 0.14
Matches are distributed among these distances:
39 1 0.00
40 46 0.12
41 36 0.09
42 10 0.03
43 24 0.06
44 206 0.53
45 60 0.15
46 3 0.01
47 1 0.00
48 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (44 bp):
GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATTACTTA
Found at i:10550984 original size:44 final size:43
Alignment explanation
Indices: 10550929--10551259 Score: 333
Period size: 44 Copynumber: 7.7 Consensus size: 43
10550919 CTATTTTCAG
* *
10550929 CCTACTCCACTGCTGACCAGGGAGATAGGACCTACAATCTTCAA
1 CCTATTCCACTGCTGACCAGGGAGATAGGA-CTACAATCTTTAA
* * *
10550973 TCTATTCCACTGCTG-CCTAGGGAGATAGAATTCT-CAATCTTCAA
1 CCTATTCCACTGCTGACC-AGGGAGATAGGA--CTACAATCTTTAA
*
10551017 CCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAA
1 CCTATTCCACTGCTGACCAGGGAGATAGGACT-ACAATCTTTAA
*
10551061 CCTATTCCACTGCT-ATCTAGGGAGATAGGA-T----TCTTTAA
1 CCTATTCCACTGCTGA-CCAGGGAGATAGGACTACAATCTTTAA
* * *
10551099 TCTATTCCACTGCTG-CTGAGAGAGATAGGATTCT-CAAT-TTTCAA
1 CCTATTCCACTGCTGAC-CAGGGAGATAGGA--CTACAATCTTT-AA
** *
10551143 CCTATTCCACTAATGACCAGGGAGATAGGATTTACAATCTTTAA
1 CCTATTCCACTGCTGACCAGGGAGATAGGA-CTACAATCTTTAA
* *
10551187 CCTATTCCACTGCTGTCCAGGGAGATAGGATTCACAATCTTTAA
1 CCTATTCCACTGCTGACCAGGGAGATAGGACT-ACAATCTTTAA
*
10551231 CCTATTCCACTGCTGACCAGAGAGATAGG
1 CCTATTCCACTGCTGACCAGGGAGATAGG
10551260 GCTGGGGTCA
Statistics
Matches: 245, Mismatches: 23, Indels: 38
0.80 0.08 0.12
Matches are distributed among these distances:
37 1 0.00
38 31 0.13
41 1 0.00
42 1 0.00
43 11 0.04
44 192 0.78
45 8 0.03
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (43 bp):
CCTATTCCACTGCTGACCAGGGAGATAGGACTACAATCTTTAA
Found at i:10551031 original size:88 final size:87
Alignment explanation
Indices: 10550924--10551259 Score: 375
Period size: 88 Copynumber: 3.9 Consensus size: 87
10550914 ATCTGCTATT
* * *
10550924 TTCAGCCTACTCCACTGCTGACCAGGGAGATAGGAC-CTACAATCTTCAATCTATTCCACTGCTG
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTC-ACAATCTTCAACCTATTCCACTGCTG
*
10550988 -CCTAGGGAGATAGAATTCTCAATC
65 ACC-AGGGAGATAGGATT-TCAATC
* *
10551012 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCT-A
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGA
*
10551076 TCTAGGGAGATAGGA-TTC--T-
66 -CCAGGGAGATAGGATTTCAATC
* * * * * * **
10551095 TT-AATCTATTCCACTGCTG-CTGAGAGAGATAGGATTCTCAATTTTCAACCTATTCCACTAATG
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTG
10551158 ACCAGGGAGATAGGATTTACAATC
65 ACCAGGGAGATAGGATTT-CAATC
* * * *
10551182 TTTAACCTATTCCACTGCTGTCCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGA
*
10551247 CCAGAGAGATAGG
66 CCAGGGAGATAGG
10551260 GCTGGGGTCA
Statistics
Matches: 211, Mismatches: 25, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
81 1 0.00
82 63 0.30
83 5 0.02
84 2 0.01
86 3 0.01
87 3 0.01
88 131 0.62
89 3 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (87 bp):
TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGA
CCAGGGAGATAGGATTTCAATC
Found at i:10551105 original size:38 final size:38
Alignment explanation
Indices: 10551054--10551132 Score: 115
Period size: 38 Copynumber: 2.1 Consensus size: 38
10551044 GGATTCACAA
* *
10551054 TCTTTAACCTATTCCACTGCTATCT-AGGGAGATAGGAT
1 TCTTTAACCTATTCCACTGCT-GCTGAGAGAGATAGGAT
*
10551092 TCTTTAATCTATTCCACTGCTGCTGAGAGAGATAGGAT
1 TCTTTAACCTATTCCACTGCTGCTGAGAGAGATAGGAT
10551130 TCT
1 TCT
10551133 CAATTTTCAA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 2 0.05
38 35 0.95
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.35
Consensus pattern (38 bp):
TCTTTAACCTATTCCACTGCTGCTGAGAGAGATAGGAT
Found at i:10551132 original size:126 final size:126
Alignment explanation
Indices: 10550966--10551219 Score: 411
Period size: 126 Copynumber: 2.0 Consensus size: 126
10550956 GGACCTACAA
* **
10550966 TCTTCAATCTATTCCACTGCTGCCTAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCT
1 TCTTCAATCTATTCCACTGCTGCCTAGAGAGATAGAATTCTCAATCTTCAACCTATTCCACTAAT
*
10551031 GACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTATCTAGGGAGATAGGAT
66 GACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTATCCAGGGAGATAGGAT
* * *
10551092 TCTTTAATCTATTCCACTGCTG-CTGAGAGAGATAGGATTCTCAATTTTCAACCTATTCCACTAA
1 TCTTCAATCTATTCCACTGCTGCCT-AGAGAGATAGAATTCTCAATCTTCAACCTATTCCACTAA
* *
10551156 TGACCAGGGAGATAGGATTTACAATCTTTAACCTATTCCACTGCTGTCCAGGGAGATAGGAT
65 TGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTATCCAGGGAGATAGGAT
10551218 TC
1 TC
10551220 ACAATCTTTA
Statistics
Matches: 118, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
125 2 0.02
126 116 0.98
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (126 bp):
TCTTCAATCTATTCCACTGCTGCCTAGAGAGATAGAATTCTCAATCTTCAACCTATTCCACTAAT
GACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTATCCAGGGAGATAGGAT
Found at i:10551258 original size:170 final size:170
Alignment explanation
Indices: 10550950--10551259 Score: 466
Period size: 170 Copynumber: 1.8 Consensus size: 170
10550940 GCTGACCAGG
* **
10550950 GAGATAGGACCTACAATCTTCAATCTATTCCACTGCTGCCTAGGGAGATAGAATTCTCAATCTTC
1 GAGATAGGACCTACAATCTTCAACCTATTCCACTAATGCCTAGGGAGATAGAATTCTCAATCTTC
*
10551015 AACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTATCTA
66 AACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTATCCA
*
10551080 GGGAGATAGGATTCTTTAATCTATTCCACTGCTGCTGAGA
131 GAGAGATAGGATTCTTTAATCTATTCCACTGCTGCTGAGA
* * *
10551120 GAGATAGGATTCT-CAATTTTCAACCTATTCCACTAATGACC-AGGGAGATAGGATT-TACAATC
1 GAGATAGGA-CCTACAATCTTCAACCTATTCCACTAATG-CCTAGGGAGATAGAATTCT-CAATC
* *
10551182 TTTAACCTATTCCACTGCTGTCCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGA
63 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCT-A
10551247 -CCAGAGAGATAGG
127 TCCAGAGAGATAGG
10551260 GCTGGGGTCA
Statistics
Matches: 126, Mismatches: 10, Indels: 8
0.88 0.07 0.06
Matches are distributed among these distances:
169 1 0.01
170 120 0.95
171 5 0.04
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (170 bp):
GAGATAGGACCTACAATCTTCAACCTATTCCACTAATGCCTAGGGAGATAGAATTCTCAATCTTC
AACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTATCCA
GAGAGATAGGATTCTTTAATCTATTCCACTGCTGCTGAGA
Found at i:10551318 original size:88 final size:87
Alignment explanation
Indices: 10551259--10551664 Score: 481
Period size: 88 Copynumber: 4.6 Consensus size: 87
10551249 AGAGAGATAG
* * *
10551259 GGCTGGGGTCATCAATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
1 GGCTGGTGT-ATCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGC
*
10551324 TCCGCTGCAACCCAGTGAGGCAA
65 TCCGCTGCAACCCAGGGAGGCAA
* * * * * * *
10551347 GACTGGTGTTTTCAATCTGCTTCGTTGTCGGTGTAGGAAGGCAATATCTGCTATTTTTAGTCTGC
1 GGCTGGTG-TATCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGC
*
10551412 TCCGCTACAACCCAGGGAGGCAA
65 TCCGCTGCAACCCAGGGAGGCAA
* * * * * *
10551435 GGCTGGTGTCTTCGATCTACTTCGCTGTCAGTGCAGAAAAGG-AAGATCTGTTATTTTTAGTCTG
1 GGCTGGTGT-ATCGATCTGCTTCGCTGTCGGTGCAG-GAAGGCAAGATCTGCTATTTTTAGCCTG
*
10551499 CTCCGCTGCAACCCAGGGAGGTAA
64 CTCCGCTGCAACCCAGGGAGGCAA
* * * *
10551523 GGCTGGTGTATTCGATTTGCTTCGCTGTCGGTGCTGGAAGGCAAGATCTACTATTTTTAGCCTAC
1 GGCTGGTGTA-TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGC
* * *
10551588 TCCACTACAACCTAGGGAGGCAA
65 TCCGCTGCAACCCAGGGAGGCAA
* * * *
10551611 GGCTGGTGTATTTGATTTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTACTAT
1 GGCTGGTGTA-TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTAT
10551665 CTTCACTGAT
Statistics
Matches: 275, Mismatches: 38, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
87 5 0.02
88 265 0.96
89 5 0.02
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (87 bp):
GGCTGGTGTATCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCT
CCGCTGCAACCCAGGGAGGCAA
Found at i:10551579 original size:176 final size:176
Alignment explanation
Indices: 10551259--10551664 Score: 537
Period size: 176 Copynumber: 2.3 Consensus size: 176
10551249 AGAGAGATAG
* * *
10551259 GGCTGGGGTCATCAATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
* * *
10551324 TCCGCTGCAACCCAGTGAGGCAAGACTGGTGTTTTCAATCTGCTTCGTTGTCGGTGTAGGAAGGC
66 TCCGCTGCAACCCAGGGAGGCAAGACTGGTGTATTCAATCTGCTTCGCTGTCGGTGTAGGAAGGC
* * * * *
10551389 AATATCTGCTATTTTTAGTCTGCTCCGCTACAACCCAGGGAGGCAA
131 AAGATCTACTATTTTTAGCCTACTCCACTACAACCCAGGGAGGCAA
* * * * **
10551435 GGCTGGTGTCTTCGATCTACTTCGCTGTCAGTGCAGAAAAGG-AAGATCTGTTATTTTTAGTCTG
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAG-GAAGGCAAGATCTGCTATTTTTAACCTG
* * * *
10551499 CTCCGCTGCAACCCAGGGAGGTAAGGCTGGTGTATTCGATTTGCTTCGCTGTCGGTGCT-GGAAG
65 CTCCGCTGCAACCCAGGGAGGCAAGACTGGTGTATTCAATCTGCTTCGCTGTCGGTG-TAGGAAG
*
10551563 GCAAGATCTACTATTTTTAGCCTACTCCACTACAACCTAGGGAGGCAA
129 GCAAGATCTACTATTTTTAGCCTACTCCACTACAACCCAGGGAGGCAA
* * * * *
10551611 GGCTGGTGTATTTGATTTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTACTAT
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTAT
10551665 CTTCACTGAT
Statistics
Matches: 196, Mismatches: 31, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
175 4 0.02
176 187 0.95
177 5 0.03
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (176 bp):
GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
TCCGCTGCAACCCAGGGAGGCAAGACTGGTGTATTCAATCTGCTTCGCTGTCGGTGTAGGAAGGC
AAGATCTACTATTTTTAGCCTACTCCACTACAACCCAGGGAGGCAA
Found at i:10562781 original size:5 final size:5
Alignment explanation
Indices: 10562773--10562797 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
10562763 TATAATATAT
10562773 TTTCC TTTCC TTTCC TTTCC TTTCC
1 TTTCC TTTCC TTTCC TTTCC TTTCC
10562798 ACCACTTAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (5 bp):
TTTCC
Found at i:10573443 original size:23 final size:23
Alignment explanation
Indices: 10573417--10573466 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
10573407 GTTATCGATC
10573417 AGTGGTAGCTTCGGCTACATATA
1 AGTGGTAGCTTCGGCTACATATA
* *
10573440 AGTGGTATCTTCGGCTACATATC
1 AGTGGTAGCTTCGGCTACATATA
10573463 AGTG
1 AGTG
10573467 TGGCACTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (23 bp):
AGTGGTAGCTTCGGCTACATATA
Found at i:10573791 original size:15 final size:15
Alignment explanation
Indices: 10573771--10573827 Score: 60
Period size: 15 Copynumber: 3.5 Consensus size: 15
10573761 ATTCAATATT
10573771 AATATTTTAATAATA
1 AATATTTTAATAATA
*
10573786 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
10573805 AATATATTAATAATA
1 AATATTTTAATAATA
10573820 AATATTTT
1 AATATTTT
10573828 GTAGTATAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
15 17 0.50
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.29
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:10591463 original size:18 final size:18
Alignment explanation
Indices: 10591432--10591466 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10591422 AATAATTTAG
*
10591432 GAAAATTTGGAAAAATAT
1 GAAAATTTGCAAAAATAT
*
10591450 GAAAATTTTCAAAAATA
1 GAAAATTTGCAAAAATA
10591467 GGGGACACAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.57, C:0.03, G:0.11, T:0.29
Consensus pattern (18 bp):
GAAAATTTGCAAAAATAT
Found at i:10593387 original size:25 final size:25
Alignment explanation
Indices: 10593353--10593424 Score: 108
Period size: 25 Copynumber: 2.9 Consensus size: 25
10593343 AATCACAATC
*
10593353 AAAGCTTCAAGCACATAATTATATA
1 AAAGCTTCAAACACATAATTATATA
* *
10593378 AAAGCTTCAAACAAATAATTATATC
1 AAAGCTTCAAACACATAATTATATA
*
10593403 AAATCTTCAAACACATAATTAT
1 AAAGCTTCAAACACATAATTAT
10593425 CACCAAAAAC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.50, C:0.17, G:0.04, T:0.29
Consensus pattern (25 bp):
AAAGCTTCAAACACATAATTATATA
Found at i:10606718 original size:2 final size:2
Alignment explanation
Indices: 10606711--10606744 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
10606701 TAAAGGGATA
10606711 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
10606745 TTACAAGAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:10609828 original size:6 final size:6
Alignment explanation
Indices: 10609813--10609849 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
10609803 CTCAAGCACA
* *
10609813 GAAGAT GAAGAC GAAGAC GAAAAC GAAGAC GAAGAC G
1 GAAGAC GAAGAC GAAGAC GAAGAC GAAGAC GAAGAC G
10609850 GCGGTGGAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.51, C:0.14, G:0.32, T:0.03
Consensus pattern (6 bp):
GAAGAC
Found at i:10612969 original size:15 final size:15
Alignment explanation
Indices: 10612949--10612980 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
10612939 ACCAGCTCCA
10612949 TTAGAGCATTTTCGC
1 TTAGAGCATTTTCGC
10612964 TTAGAGCATTTTCGC
1 TTAGAGCATTTTCGC
10612979 TT
1 TT
10612981 CAATAGTGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.44
Consensus pattern (15 bp):
TTAGAGCATTTTCGC
Found at i:10616520 original size:11 final size:11
Alignment explanation
Indices: 10616491--10616524 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
10616481 AATTTAAAAA
*
10616491 AATATTTTTTT
1 AATAATTTTTT
10616502 AATGAATTTTTT
1 AAT-AATTTTTT
10616514 AATAATTTTTT
1 AATAATTTTTT
10616525 GAATTTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (11 bp):
AATAATTTTTT
Found at i:10618610 original size:17 final size:17
Alignment explanation
Indices: 10618588--10618624 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
10618578 CAAGTAAGAC
10618588 TCTAAAATAACAAAACT
1 TCTAAAATAACAAAACT
*
10618605 TCTAAAATAATAAAACT
1 TCTAAAATAACAAAACT
10618622 TCT
1 TCT
10618625 CTTTGGACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.54, C:0.16, G:0.00, T:0.30
Consensus pattern (17 bp):
TCTAAAATAACAAAACT
Found at i:10623942 original size:16 final size:16
Alignment explanation
Indices: 10623921--10623952 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
10623911 TTAAATAAAG
10623921 AATAATCTTTGATGCA
1 AATAATCTTTGATGCA
10623937 AATAATCTTTGATGCA
1 AATAATCTTTGATGCA
10623953 CCATCAATAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (16 bp):
AATAATCTTTGATGCA
Found at i:10624851 original size:18 final size:20
Alignment explanation
Indices: 10624820--10624858 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
10624810 GATGCATATT
10624820 AATTTTTGAATTAATT-TAA
1 AATTTTTGAATTAATTATAA
*
10624839 AATTTTT-ATTTAATTATAA
1 AATTTTTGAATTAATTATAA
10624858 A
1 A
10624859 TTATTATGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (20 bp):
AATTTTTGAATTAATTATAA
Found at i:10633382 original size:44 final size:42
Alignment explanation
Indices: 10633320--10633507 Score: 209
Period size: 42 Copynumber: 4.4 Consensus size: 42
10633310 ATGGCAGTAC
* * * *
10633320 ATGATTTCGTATATGACCACGTCTGAGACGTTGGCATCG-AT
1 ATGATTTTGTGTAAGACCACGTCTGAGACATTGGCATCGTAT
* * *
10633361 TTGAGATTTACGTGTAAGACCATGTCT-AGGACATTGGCATCGTAT
1 AT--GATTT-TGTGTAAGACCACGTCTGA-GACATTGGCATCGTAT
* * * *
10633406 ATGATTTTGTGTAAGATCATGTTTGGGACATTGGCATCGTAT
1 ATGATTTTGTGTAAGACCACGTCTGAGACATTGGCATCGTAT
* *
10633448 ATGATTTTGTGTAAGACCACATCTGGGACATTGGCATCGTAT
1 ATGATTTTGTGTAAGACCACGTCTGAGACATTGGCATCGTAT
10633490 ATGATTTTGTGTAAGACC
1 ATGATTTTGTGTAAGACC
10633508 TTGTCAAGGT
Statistics
Matches: 127, Mismatches: 14, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
41 1 0.01
42 86 0.68
43 11 0.09
44 26 0.20
45 3 0.02
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (42 bp):
ATGATTTTGTGTAAGACCACGTCTGAGACATTGGCATCGTAT
Found at i:10633427 original size:42 final size:42
Alignment explanation
Indices: 10633372--10633512 Score: 228
Period size: 42 Copynumber: 3.4 Consensus size: 42
10633362 TGAGATTTAC
*
10633372 GTGTAAGACCATGTCTAGGACATTGGCATCGTATATGATTTT
1 GTGTAAGACCATGTCTGGGACATTGGCATCGTATATGATTTT
* *
10633414 GTGTAAGATCATGTTTGGGACATTGGCATCGTATATGATTTT
1 GTGTAAGACCATGTCTGGGACATTGGCATCGTATATGATTTT
**
10633456 GTGTAAGACCACATCTGGGACATTGGCATCGTATATGATTTT
1 GTGTAAGACCATGTCTGGGACATTGGCATCGTATATGATTTT
*
10633498 GTGTAAGACCTTGTC
1 GTGTAAGACCATGTC
10633513 AAGGTTAGTG
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 89 1.00
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.36
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACATTGGCATCGTATATGATTTT
Found at i:10633525 original size:84 final size:84
Alignment explanation
Indices: 10633372--10633528 Score: 215
Period size: 84 Copynumber: 1.9 Consensus size: 84
10633362 TGAGATTTAC
** * *** *
10633372 GTGTAAGACCATGTCTAGGACATTGGCATCGTATATGATTTTGTGTAAGATCATGTTTGGGACAT
1 GTGTAAGACCACATCTAGGACATTGGCATCGTATATGATTTTGTGTAAGACCATGTCAAGGACAG
10633437 TGGCATCGTATATGATTTT
66 TGGCATCGTATATGATTTT
* * **
10633456 GTGTAAGACCACATCTGGGACATTGGCATCGTATATGATTTTGTGTAAGACCTTGTCAAGGTTAG
1 GTGTAAGACCACATCTAGGACATTGGCATCGTATATGATTTTGTGTAAGACCATGTCAAGGACAG
10633521 TGGCATCG
66 TGGCATCG
10633529 ATAGTTGATT
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
84 62 1.00
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.35
Consensus pattern (84 bp):
GTGTAAGACCACATCTAGGACATTGGCATCGTATATGATTTTGTGTAAGACCATGTCAAGGACAG
TGGCATCGTATATGATTTT
Found at i:10634131 original size:40 final size:40
Alignment explanation
Indices: 10634045--10634120 Score: 143
Period size: 40 Copynumber: 1.9 Consensus size: 40
10634035 AATTTGAAAG
*
10634045 CATGGTTTATATGTTCATTGATAAATAAGATAAGTGAAGT
1 CATGGTTTATATGTTCATTGATAAATAAGATAAATGAAGT
10634085 CATGGTTTATATGTTCATTGATAAATAAGATAAATG
1 CATGGTTTATATGTTCATTGATAAATAAGATAAATG
10634121 TATATGTGGT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.38, C:0.05, G:0.18, T:0.38
Consensus pattern (40 bp):
CATGGTTTATATGTTCATTGATAAATAAGATAAATGAAGT
Found at i:10638766 original size:29 final size:29
Alignment explanation
Indices: 10638703--10638768 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
10638693 AGTTTAATTT
*
10638703 CCAAACTTTGGGGTAAAAGCGTAATTATG
1 CCAAAGTTTGGGGTAAAAGCGTAATTATG
** * *
10638732 TAAAAGTTTAGGGG-AAAATCGTAATTTTG
1 CCAAAGTTT-GGGGTAAAAGCGTAATTATG
10638761 CCAAAGTT
1 CCAAAGTT
10638769 AGAGTCGAGG
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
29 25 0.86
30 4 0.14
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (29 bp):
CCAAAGTTTGGGGTAAAAGCGTAATTATG
Found at i:10639186 original size:50 final size:50
Alignment explanation
Indices: 10639106--10639298 Score: 251
Period size: 50 Copynumber: 3.8 Consensus size: 50
10639096 ATTTGGGTAA
* *
10639106 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACTGAGATG
*
10639156 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACTGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACTGAGATG
** * * * * *
10639206 AGAGGTCCCCCGTAAGACCATGTGTGGGACATGGCATGGGCATTGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACTGAGATG
* * * *
10639256 AGAGCATCCCATGTAAGACCATGTTTGGGACATGTCTTTGGCA
1 AGAG-GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
10639299 TGTTATTATC
Statistics
Matches: 124, Mismatches: 18, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
50 93 0.75
51 31 0.25
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACTGAGATG
Found at i:10640014 original size:16 final size:17
Alignment explanation
Indices: 10639993--10640029 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
10639983 GGATAGTATA
10639993 AAATGA-AT-TAGAATGT
1 AAATGATATATAGAAT-T
10640009 AAATGATATATAGAATT
1 AAATGATATATAGAATT
10640026 AAAT
1 AAAT
10640030 ATTATTGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 6 0.32
17 7 0.37
18 6 0.32
ACGTcount: A:0.54, C:0.00, G:0.14, T:0.32
Consensus pattern (17 bp):
AAATGATATATAGAATT
Found at i:10642586 original size:20 final size:20
Alignment explanation
Indices: 10642561--10642600 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
10642551 AAAAAGGAAG
10642561 TTAGAAAAGAAATGAATCGA
1 TTAGAAAAGAAATGAATCGA
10642581 TTAGAAAAGAAATGAATCGA
1 TTAGAAAAGAAATGAATCGA
10642601 CTAGGATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.55, C:0.05, G:0.20, T:0.20
Consensus pattern (20 bp):
TTAGAAAAGAAATGAATCGA
Found at i:10660931 original size:42 final size:42
Alignment explanation
Indices: 10660847--10660991 Score: 154
Period size: 42 Copynumber: 3.5 Consensus size: 42
10660837 TGTTAACTCA
* * * *
10660847 TATGAG-TTTCTGTTCAACCCTAATGGGTTTTCGTTCATCTCT
1 TATGAGCTTTC-GTTCAACCCTTATGGGTTTCCGTTTAGCTCT
* * *
10660889 TTTGAGC-TTCAGTTTAACCCTTATGGGTTTCCATTTAGCTCT
1 TATGAGCTTTC-GTTCAACCCTTATGGGTTTCCGTTTAGCTCT
10660931 TATGAGCTTTCGTTCAACCCTTATGGGTTTCCGTTTAGCAT-T
1 TATGAGCTTTCGTTCAACCCTTATGGGTTTCCGTTTAGC-TCT
*
10660973 TATGTGC-TTCTGTTCAACC
1 TATGAGCTTTC-GTTCAACC
10660992 TTTAGGCTTT
Statistics
Matches: 87, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
41 3 0.03
42 80 0.92
43 4 0.05
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.44
Consensus pattern (42 bp):
TATGAGCTTTCGTTCAACCCTTATGGGTTTCCGTTTAGCTCT
Done.