Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 38 of 207
Found at i:11002047 original size:21 final size:22
Alignment explanation
Indices: 11002021--11002061 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
11002011 GCTTACTAAC
11002021 TACC-TTGTATCGGTAGAAGTA
1 TACCTTTGTATCGGTAGAAGTA
*
11002042 TACCTTTGTGTCGGTAGAAG
1 TACCTTTGTATCGGTAGAAG
11002062 CCAAGTTGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (22 bp):
TACCTTTGTATCGGTAGAAGTA
Found at i:11002679 original size:20 final size:20
Alignment explanation
Indices: 11002637--11002696 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
11002627 TACCCAGAGA
*
11002637 TCAAAGTATC-GATACCCTAC
1 TCAAAGTATCAG-TACCTTAC
*
11002657 TCAAAGTATCAGTACCTTTC
1 TCAAAGTATCAGTACCTTAC
** *
11002677 TCATTGTATCAATACCTTAC
1 TCAAAGTATCAGTACCTTAC
11002697 CCCTAGTATC
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
20 32 0.97
21 1 0.03
ACGTcount: A:0.32, C:0.27, G:0.08, T:0.33
Consensus pattern (20 bp):
TCAAAGTATCAGTACCTTAC
Found at i:11004980 original size:30 final size:30
Alignment explanation
Indices: 11004946--11005008 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
11004936 ACTTAACAAG
11004946 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTTTAAAATAATAACAAAATTAA
*
11004976 CAAATGCCTTTAAAATAATAACAAGATTAA
1 CAAATGCCTTTAAAATAATAACAAAATTAA
11005006 CAA
1 CAA
11005009 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.56, C:0.14, G:0.05, T:0.25
Consensus pattern (30 bp):
CAAATGCCTTTAAAATAATAACAAAATTAA
Found at i:11005093 original size:22 final size:23
Alignment explanation
Indices: 11005046--11005093 Score: 55
Period size: 22 Copynumber: 2.1 Consensus size: 23
11005036 TAATAACAAC
* *
11005046 AAAATAGTAGCAATATAATAGTA
1 AAAATAGTAGCAAAATAATAGGA
11005069 AAAAT-GTAGCAAAATAA-AGAGA
1 AAAATAGTAGCAAAATAATAG-GA
11005091 AAA
1 AAA
11005094 CAACAAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 2 0.09
22 15 0.68
23 5 0.23
ACGTcount: A:0.62, C:0.04, G:0.15, T:0.19
Consensus pattern (23 bp):
AAAATAGTAGCAAAATAATAGGA
Found at i:11007760 original size:16 final size:15
Alignment explanation
Indices: 11007729--11007758 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
11007719 ACTATTAATA
11007729 ATTTTTTAAATATTT
1 ATTTTTTAAATATTT
*
11007744 ATTTTTTTAATATTT
1 ATTTTTTAAATATTT
11007759 TACTATACTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
ATTTTTTAAATATTT
Found at i:11018213 original size:16 final size:16
Alignment explanation
Indices: 11018181--11018212 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
11018171 ATAATTTTTT
11018181 ATATTTTTATTTAAAA
1 ATATTTTTATTTAAAA
11018197 ATATTTTT-TTTAAAA
1 ATATTTTTATTTAAAA
11018212 A
1 A
11018213 AATCATCATC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
ATATTTTTATTTAAAA
Found at i:11018797 original size:26 final size:27
Alignment explanation
Indices: 11018749--11018803 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
11018739 CTTAATATTT
* *
11018749 AAGTAAATATATATAATATAATAA-TA
1 AAGTAAATATATATAAAAAAATAAGTA
11018775 AAGTAAATATA-ATAAAACAAATAAGTA
1 AAGTAAATATATATAAAA-AAATAAGTA
11018802 AA
1 AA
11018804 TGAAATAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 5 0.20
26 16 0.64
27 4 0.16
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.27
Consensus pattern (27 bp):
AAGTAAATATATATAAAAAAATAAGTA
Found at i:11018800 original size:22 final size:23
Alignment explanation
Indices: 11018748--11018812 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 23
11018738 ACTTAATATT
11018748 TAAGTAAATATATATAATATAATAA
1 TAAGTAAATATA-ATAA-ATAATAA
11018773 TAAAGTAAATATAATAAA-ACA-AA
1 T-AAGTAAATATAATAAATA-ATAA
11018796 TAAGTAAATGA-AATAAA
1 TAAGTAAAT-ATAATAAA
11018813 GAAAGATAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
22 14 0.38
23 5 0.14
24 2 0.05
25 5 0.14
26 11 0.30
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.28
Consensus pattern (23 bp):
TAAGTAAATATAATAAATAATAA
Found at i:11023383 original size:18 final size:20
Alignment explanation
Indices: 11023334--11023392 Score: 77
Period size: 20 Copynumber: 3.0 Consensus size: 20
11023324 TTAGTTGAAA
* **
11023334 ACCCTGAACACTTTTAAAAT
1 ACCCTGAACCCTAATAAAAT
11023354 ACCCTGAACCCTAATAAAA-
1 ACCCTGAACCCTAATAAAAT
11023373 ACCCT-AACCCTAATAAAAT
1 ACCCTGAACCCTAATAAAAT
11023392 A
1 A
11023393 AAAGTCCTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
18 13 0.37
19 6 0.17
20 16 0.46
ACGTcount: A:0.46, C:0.29, G:0.03, T:0.22
Consensus pattern (20 bp):
ACCCTGAACCCTAATAAAAT
Found at i:11026650 original size:30 final size:30
Alignment explanation
Indices: 11026614--11026670 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
11026604 ACTGTTGGTG
*
11026614 AAATGTTTTTTTGATCTTGACATGTACTTA
1 AAATGTTCTTTTGATCTTGACATGTACTTA
11026644 AAATGTTCTTTTGATCTTGACATGTAC
1 AAATGTTCTTTTGATCTTGACATGTAC
11026671 CTATGATATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.26, C:0.12, G:0.14, T:0.47
Consensus pattern (30 bp):
AAATGTTCTTTTGATCTTGACATGTACTTA
Found at i:11031032 original size:44 final size:44
Alignment explanation
Indices: 11030922--11031145 Score: 216
Period size: 44 Copynumber: 5.1 Consensus size: 44
11030912 ATGGAGTAGA
* *
11030922 TACAAATCTTATCTCCCTGAAGTTACAGTGGAGTAGATTGAAG-
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
* ** * * * *
11030965 AATTAATTTTATCTCTCTAAAGTTGCAGTAGAGCAGATTGAAGC
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
* * * * *
11031009 CACAAATCTAATCTCTCTGAAGTTGCAGCGGAGCAGATTGAAGT
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
* * * * *
11031053 TACGAATCTTATCTCCCTGAAGTTGCAGTGGGGCAAAATAAAGC
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
* * * * * *
11031097 TACAAATCTCATTTCCTTGAAGTTGTAGTAGAACAGATTGAAGC
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
11031141 TACAA
1 TACAA
11031146 GTTACAAATC
Statistics
Matches: 141, Mismatches: 39, Indels: 1
0.78 0.22 0.01
Matches are distributed among these distances:
43 34 0.24
44 107 0.76
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.29
Consensus pattern (44 bp):
TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
Found at i:11031717 original size:21 final size:20
Alignment explanation
Indices: 11031679--11031717 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
11031669 AGCAGAAAAG
*
11031679 GTAGAAATAGTAGAGAAACA
1 GTAGAAATAGAAGAGAAACA
*
11031699 GTAGCAAATAGAAGTGAAA
1 GTAG-AAATAGAAGAGAAA
11031718 AACAAAACAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.54, C:0.05, G:0.26, T:0.15
Consensus pattern (20 bp):
GTAGAAATAGAAGAGAAACA
Found at i:11032744 original size:57 final size:60
Alignment explanation
Indices: 11032681--11032808 Score: 147
Period size: 60 Copynumber: 2.2 Consensus size: 60
11032671 GATTAATTTC
*
11032681 ATTATTTATATATT-AATT-T-CA-TTATTATTCTTCACTTTTTAAATCCCTAAAGTTAAT
1 ATTATTTATAT-TTGAATTATACATTTATTATTCTTCACTTTTTAAATACCTAAAGTTAAT
** * * * *
11032738 ATTATTTATATTTGTTTTATATATTTATTATTCTTTATTTTTTAAATACCTAAATTTAAT
1 ATTATTTATATTTGAATTATACATTTATTATTCTTCACTTTTTAAATACCTAAAGTTAAT
*
11032798 ATTATTCATAT
1 ATTATTTATAT
11032809 CTATTATATT
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
56 2 0.03
57 13 0.22
58 1 0.02
59 1 0.02
60 42 0.71
ACGTcount: A:0.33, C:0.09, G:0.02, T:0.57
Consensus pattern (60 bp):
ATTATTTATATTTGAATTATACATTTATTATTCTTCACTTTTTAAATACCTAAAGTTAAT
Found at i:11032772 original size:60 final size:60
Alignment explanation
Indices: 11032702--11032826 Score: 169
Period size: 60 Copynumber: 2.1 Consensus size: 60
11032692 ATTAATTTCA
* * * * *
11032702 TTATTATTCTTCACTTTTTAAATCCCTAAAGTTAATATTATTTATATTTGTTTTATATAT
1 TTATTATTCTTCACTTTTTAAATACCTAAAGTTAATATTATTCATATCTATTATATATAT
* * * *
11032762 TTATTATTCTTTATTTTTTAAATACCTAAATTTAATATTATTCATATCTATTATATTTAT
1 TTATTATTCTTCACTTTTTAAATACCTAAAGTTAATATTATTCATATCTATTATATATAT
11032822 TTATT
1 TTATT
11032827 TTTTCATTAT
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.31, C:0.09, G:0.02, T:0.58
Consensus pattern (60 bp):
TTATTATTCTTCACTTTTTAAATACCTAAAGTTAATATTATTCATATCTATTATATATAT
Found at i:11032852 original size:69 final size:67
Alignment explanation
Indices: 11032753--11033178 Score: 306
Period size: 69 Copynumber: 6.1 Consensus size: 67
11032743 TTATATTTGT
* * *
11032753 TTTATATATTTATTATTC-TTTATTTTTTAAATACCTAAATTTAATATTATTCATATCTATTATA
1 TTTAT-TATTTATTATTCTTTTA-CTTTTAAATACTTAAATTTAATATTATTTATATCTATTATA
*
11032817 TTTA
64 TCTA
* * * * *
11032821 TTTATTTTTTCATTATTCTTTTATCTTTTAAATATTTAAATGTAATATTATTTATATTTTTTATC
1 TTTATTATTT-ATTATTCTTTTA-CTTTTAAATACTTAAATTTAATATTATTTATATCTATTAT-
*
11032886 AATTTA
63 -ATCTA
* * * * * * *
11032892 TTTATTTATTTATCATTATTTTACTTTTAAAATATTTAAATTTAAGATTATGTGTA-CTTATTTT
1 TTTA-TTATTTATTATTCTTTTACTTTT-AAATACTTAAATTTAATATTATTTATATC-TATTAT
11032956 ATCTA
63 ATCTA
* * * *
11032961 TTTACTTATTTATTATTCTTTTACTTTTTAAATGCTTAAATTTAATATTATTTATATTTGTTTTA
1 TTTA-TTATTTATTATTCTTTTAC-TTTTAAATACTTAAATTTAATATTATTTATATCTATTATA
11033026 TCTA
64 TCTA
* * * * * * * *
11033030 TTTATTCACTTATTTATTCTTTTACTTTTAAA-GCATTTAATTTCGATATTATTCATATTTGTTT
1 TTTATT-ATTTA-TTATTCTTTTACTTTTAAATAC-TTAAATTT-AATATTATTTATATCTATTA
*
11033094 TATCAA
62 TATCTA
* * * *
11033100 TTTATTTATTTATTATT-TTACTT-TTTTTAAATACTTCAATTTAATGTTATTTGTTTTATCTAT
1 TTTA-TTATTTATTATTCTT--TTACTTTTAAATACTTAAATTTAATATTA--T-TTATATCTAT
*
11033163 T-TATCAA
60 TATATCTA
11033170 TTTATTATT
1 TTTATTATT
11033179 CTTTTTTAAG
Statistics
Matches: 294, Mismatches: 44, Indels: 39
0.78 0.12 0.10
Matches are distributed among these distances:
67 4 0.01
68 23 0.08
69 141 0.48
70 66 0.22
71 55 0.19
72 5 0.02
ACGTcount: A:0.29, C:0.07, G:0.03, T:0.61
Consensus pattern (67 bp):
TTTATTATTTATTATTCTTTTACTTTTAAATACTTAAATTTAATATTATTTATATCTATTATATC
TA
Found at i:11032874 original size:79 final size:71
Alignment explanation
Indices: 11032816--11033113 Score: 198
Period size: 70 Copynumber: 4.2 Consensus size: 71
11032806 TATCTATTAT
* * *
11032816 ATTTATTTATTT-TTTCATTATTCTTTTATCTTTT-AAATATTTAAATGTAATATTATTTATATT
1 ATTTATTTATTTATTT-ATCATTATTTTA-CTTTTAAAATATTTAAATGTAAGATTATTTATATT
*
11032879 TTTTATCA
64 TTATATCA
* * * *
11032887 ATTTATTTATTTATTTATCATTATTTTACTTTTAAAATATTTAAATTTAAGATTATGTGTA-CTT
1 ATTTATTTATTTATTTATCATTATTTTACTTTTAAAATATTTAAATGTAAGATTATTTATATTTT
**
11032951 AT-TTT
66 ATATCA
* * * * * ** * *
11032956 ATCTATTTACTTATTTATTATTCTTTTACTTTTTAAATGCTTAAATTTAATATTATTTATATTTG
1 ATTTATTTATTTATTTATCATTATTTTACTTTTAAAATATTTAAATGTAAGATTATTTATA-TT-
* *
11033021 TTTTATCT
64 TTATATCA
* * * ** * * * *
11033029 ATTTATTCACTTA-TT-T-ATTCTTTTACTTTTAAAGCATTT-AATTTCGATATTATTCATATTT
1 ATTTATTTATTTATTTATCATTATTTTACTTTTAAAATATTTAAATGT-AAGATTATTTATA-TT
*
11033090 GTTTTATCA
64 -TTATATCA
11033099 ATTTATTTATTTATT
1 ATTTATTTATTTATT
11033114 ATTTTACTTT
Statistics
Matches: 184, Mismatches: 35, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
69 57 0.31
70 59 0.32
71 47 0.26
72 8 0.04
73 13 0.07
ACGTcount: A:0.29, C:0.07, G:0.03, T:0.61
Consensus pattern (71 bp):
ATTTATTTATTTATTTATCATTATTTTACTTTTAAAATATTTAAATGTAAGATTATTTATATTTT
ATATCA
Found at i:11032894 original size:21 final size:20
Alignment explanation
Indices: 11032868--11032906 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
11032858 AAATGTAATA
*
11032868 TTATTTATATTTTTTATCAAT
1 TTATTTAT-TTATTTATCAAT
11032889 TTATTTATTTATTTATCA
1 TTATTTATTTATTTATCA
11032907 TTATTTTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (20 bp):
TTATTTATTTATTTATCAAT
Found at i:11032942 original size:140 final size:141
Alignment explanation
Indices: 11032753--11033175 Score: 377
Period size: 140 Copynumber: 3.0 Consensus size: 141
11032743 TTATATTTGT
* * * * **
11032753 TTTATATATTTATTATTCTTTATTTTTTAAATACCTAAATTTAATATTATTCATATC-TATTATA
1 TTTATTTATTTA-TATTTTTTACTTTTAAAATATTTAAATTTAATATTATTCATATCTTATTATA
* * *
11032817 TTTATTTA-TTTTTTCATTATTCTTTTA-TCTTTTAAATATTTAAATGTAATATTATTTATA-TT
65 TCTATTTACTTATTT-ATTATTCTTTTACT-TTTTAAATACTTAAATGTAATATTATTTATATTT
11032879 -TTTTATCAATTTA
128 GTTTTATCAATTTA
* * *
11032892 TTTATTTATTTATCATTATTTTACTTTTAAAATATTTAAATTTAAGATTATGT-GTA-CTTATTT
1 TTTATTTATTTAT-ATT-TTTTACTTTTAAAATATTTAAATTTAATATTAT-TCATATCTTATTA
* *
11032955 TATCTATTTACTTATTTATTATTCTTTTACTTTTTAAATGCTTAAATTTAATATTATTTATATTT
63 TATCTATTTACTTATTTATTATTCTTTTACTTTTTAAATACTTAAATGTAATATTATTTATATTT
*
11033020 GTTTTATCTATTTA
128 GTTTTATCAATTTA
* * * ** * * *
11033034 TTCACTTATTTAT-TCTTTTACTTTTAAAGCATTT-AATTTCGATATTATTCATAT-TTGTTTTA
1 TTTATTTATTTATATTTTTTACTTTTAAAATATTTAAATTT-AATATTATTCATATCTTATTATA
* * * * * * *
11033096 TCAATTTATTTATTTATTA---TTTTACTTTTTTTAAATACTTCAATTTAATGTTATTTGTTTTA
65 TCTATTTACTTATTTATTATTCTTTTAC--TTTTTAAATACTTAAATGTAATATTATTTATATT-
*
11033158 TCTATTTATCAATTTA
127 TGT-TTTATCAATTTA
11033174 TT
1 TT
11033176 ATTCTTTTTT
Statistics
Matches: 236, Mismatches: 33, Indels: 29
0.79 0.11 0.10
Matches are distributed among these distances:
136 6 0.03
138 36 0.15
139 66 0.28
140 96 0.41
141 9 0.04
142 23 0.10
ACGTcount: A:0.29, C:0.07, G:0.03, T:0.61
Consensus pattern (141 bp):
TTTATTTATTTATATTTTTTACTTTTAAAATATTTAAATTTAATATTATTCATATCTTATTATAT
CTATTTACTTATTTATTATTCTTTTACTTTTTAAATACTTAAATGTAATATTATTTATATTTGTT
TTATCAATTTA
Found at i:11042900 original size:41 final size:41
Alignment explanation
Indices: 11042844--11042984 Score: 133
Period size: 41 Copynumber: 3.4 Consensus size: 41
11042834 TATGGCCTGA
* * *
11042844 CACACGTCCTGACACATGTTCGTGTGACTCACATGGTTTGG
1 CACACGGCCTAACACACGTTCGTGTGACTCACATGGTTTGG
* * **
11042885 CACATGGCCTAACACACGATCGTGTGAGC-CACACAGTTTGG
1 CACACGGCCTAACACACGTTCGTGTGA-CTCACATGGTTTGG
* * * * *
11042926 GACACGATCGTGACACACGGTT-GTATGACTCACATGGTTTGG
1 CACACG-GCCTAACACAC-GTTCGTGTGACTCACATGGTTTGG
11042968 CACACGGCCTAACACAC
1 CACACGGCCTAACACAC
11042985 AGCTCTGTGA
Statistics
Matches: 76, Mismatches: 20, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
41 45 0.59
42 29 0.38
43 2 0.03
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (41 bp):
CACACGGCCTAACACACGTTCGTGTGACTCACATGGTTTGG
Found at i:11042957 original size:83 final size:83
Alignment explanation
Indices: 11042868--11043020 Score: 245
Period size: 83 Copynumber: 1.8 Consensus size: 83
11042858 CATGTTCGTG
*
11042868 TGACTCACATGGTTTGGCACATGGCCTAACACAC-GATCGTGTGAGCCACACAGTTTGGGACACG
1 TGACTCACATGGTTTGGCACACGGCCTAACACACAGATC-TGTGAGCCACACAGTTTGGGACACG
11042932 ATCGTGACACACGGTTGTA
65 ATCGTGACACACGGTTGTA
* ** *
11042951 TGACTCACATGGTTTGGCACACGGCCTAACACACAGCTCTGTGAGCTGCACGGTTTGGGACACGA
1 TGACTCACATGGTTTGGCACACGGCCTAACACACAGATCTGTGAGCCACACAGTTTGGGACACGA
11043016 TCGTG
66 TCGTG
11043021 TGGTGTTGAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
83 61 0.95
84 3 0.05
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (83 bp):
TGACTCACATGGTTTGGCACACGGCCTAACACACAGATCTGTGAGCCACACAGTTTGGGACACGA
TCGTGACACACGGTTGTA
Found at i:11043751 original size:5 final size:5
Alignment explanation
Indices: 11043741--11043771 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
11043731 ATTTTAATTA
11043741 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT A
11043772 TCCTAACCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:11052255 original size:336 final size:336
Alignment explanation
Indices: 11051636--11052649 Score: 1744
Period size: 336 Copynumber: 3.0 Consensus size: 336
11051626 AATTCCATTT
* *
11051636 TAAATCATGTATGTATTCCTGGTTTGGTTGATTATAAATTGAGCAGCATGGTTCGTGATAATAAC
1 TAAATCATGCATGTATTCCTGGTTCGGTTGATTATAAATTGAGCAGCATGGTTCGTGATAATAAC
* * *
11051701 ATATTAATAGTTGCTGATTTAATTGATAATGCTAATAGAGAAT-GAAGGCCAGATATTATTACCG
66 ATATTAATAGTTGCTGGTTTAATTGATAATGCTAATAGAGAATGGAA-GCGAGAGATTATTACCG
* * *
11051765 ATACTTTCTCTGATGCTGACGCGGCCAGGAT-TTGTCGAATCCCATTGGTAAAAGAACCACACGA
130 ATACTTTCTTTGATGCTGACGTGGCCAGGATATT-TCGAATCCCATTGGCAAAAGAACCACACGA
11051829 GGATGTGATGGTGTGGAGATGCGAACCCTCAGGAGAGTTCTTTGTTCGGAGTGCCTACAAACTAT
194 GGATGTGATGGTGTGGAGATGCGAACCCTCAGGAGAGTTCTTTGTTCGGAGTGCCTACAAACTAT
*
11051894 TACAATCTGGTATTCCTAGTCCTACTTTCAATGAATTACAAGCCACATCTAAAGGATTCTACAGG
259 TACAATCTGGTATTCCTAGTCCTACTTTCAATGAATTACAAGCCACATCTAAAGGATTCTATAGG
11051959 AAGTTATGGAGCC
324 AAGTTATGGAGCC
11051972 TAAATCATGCATGTATTCCTGGTTCGGTTGATTATAAATTGAGCAGCATGGTTCGTGATAATAAC
1 TAAATCATGCATGTATTCCTGGTTCGGTTGATTATAAATTGAGCAGCATGGTTCGTGATAATAAC
11052037 ATATTAATAGTTGCTGGTTTAATTGATAATGCTAATAGAGAATGGAAGCGAGAGATTATTACCGA
66 ATATTAATAGTTGCTGGTTTAATTGATAATGCTAATAGAGAATGGAAGCGAGAGATTATTACCGA
*
11052102 TAATTTCTTTGATGCTGACGTGGCCAGGATATTTCGAATCCCATTGGCAAAAGAACCACACGAGG
131 TACTTTCTTTGATGCTGACGTGGCCAGGATATTTCGAATCCCATTGGCAAAAGAACCACACGAGG
*
11052167 ATGTGATGGTGTGGAGATGTGAACCCTCAGGAGAGTTCTTTGTTCGGAGTGCCTACAAACTATTA
196 ATGTGATGGTGTGGAGATGCGAACCCTCAGGAGAGTTCTTTGTTCGGAGTGCCTACAAACTATTA
* * *
11052232 CGATCTGGTATTCCTATTCCTACTTTCAATGAATTACAAGCCACATCTAGAGGATTCTATAGGAA
261 CAATCTGGTATTCCTAGTCCTACTTTCAATGAATTACAAGCCACATCTAAAGGATTCTATAGGAA
11052297 GTTATGGAGCC
326 GTTATGGAGCC
* *
11052308 TAAATCATGCATGTATTCCTGGTTCGATTGATTATAAATTGAGCAACATGGTTCGTGATAATAAC
1 TAAATCATGCATGTATTCCTGGTTCGGTTGATTATAAATTGAGCAGCATGGTTCGTGATAATAAC
* * *
11052373 ATATTAATAGTTGTTGGTTTAATTGATAATGCTAATAGAGAATGGAGGTGAGAGATTATTACCGA
66 ATATTAATAGTTGCTGGTTTAATTGATAATGCTAATAGAGAATGGAAGCGAGAGATTATTACCGA
* * *
11052438 TACTTTCTTTGATGTTGACGTGGCCAGGATATTTTGAATCCCATTGGCAAAAGAACCACATGAGG
131 TACTTTCTTTGATGCTGACGTGGCCAGGATATTTCGAATCCCATTGGCAAAAGAACCACACGAGG
*
11052503 ATGTGATGGTGTGGAGATGCGAACTCTCAGGAGAGTTCTTTGTTCGGAGTGCCTACAAACTATTA
196 ATGTGATGGTGTGGAGATGCGAACCCTCAGGAGAGTTCTTTGTTCGGAGTGCCTACAAACTATTA
* * *
11052568 CAATTTGGTATTCCTAGTCCTACTTTTAATGAATTACAAGCCACATCTAAAGGATTCTATAAGAA
261 CAATCTGGTATTCCTAGTCCTACTTTCAATGAATTACAAGCCACATCTAAAGGATTCTATAGGAA
**
11052633 ACTATGGAGCC
326 GTTATGGAGCC
11052644 TAAATC
1 TAAATC
11052650 TTCCTTCTAA
Statistics
Matches: 643, Mismatches: 33, Indels: 4
0.95 0.05 0.01
Matches are distributed among these distances:
336 638 0.99
337 5 0.01
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (336 bp):
TAAATCATGCATGTATTCCTGGTTCGGTTGATTATAAATTGAGCAGCATGGTTCGTGATAATAAC
ATATTAATAGTTGCTGGTTTAATTGATAATGCTAATAGAGAATGGAAGCGAGAGATTATTACCGA
TACTTTCTTTGATGCTGACGTGGCCAGGATATTTCGAATCCCATTGGCAAAAGAACCACACGAGG
ATGTGATGGTGTGGAGATGCGAACCCTCAGGAGAGTTCTTTGTTCGGAGTGCCTACAAACTATTA
CAATCTGGTATTCCTAGTCCTACTTTCAATGAATTACAAGCCACATCTAAAGGATTCTATAGGAA
GTTATGGAGCC
Found at i:11057287 original size:40 final size:40
Alignment explanation
Indices: 11057231--11057401 Score: 243
Period size: 40 Copynumber: 4.3 Consensus size: 40
11057221 TACACCAGCT
* *
11057231 GAAGCCTGCTAGGCACTAACCCCGATAAGTACATCGACAC
1 GAAGCCTGCTAGGCACTAAGCCCGATAAGTACACCGACAC
* * * * *
11057271 GAAGCCTGCTAAGCACTAATCCCAATAAGTATACCAACAC
1 GAAGCCTGCTAGGCACTAAGCCCGATAAGTACACCGACAC
*
11057311 GAAGCATGCTAGGCACTAAGCCCGATAAGTACACCGACAC
1 GAAGCCTGCTAGGCACTAAGCCCGATAAGTACACCGACAC
* * *
11057351 GAAGCCTGCTAGGAACTAAGCCCGATAAGTACACTGACAT
1 GAAGCCTGCTAGGCACTAAGCCCGATAAGTACACCGACAC
11057391 GAAGCCTGCTA
1 GAAGCCTGCTA
11057402 AGCAACAAGG
Statistics
Matches: 115, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 115 1.00
ACGTcount: A:0.35, C:0.29, G:0.20, T:0.16
Consensus pattern (40 bp):
GAAGCCTGCTAGGCACTAAGCCCGATAAGTACACCGACAC
Found at i:11058507 original size:21 final size:20
Alignment explanation
Indices: 11058485--11058524 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
11058475 TTTTACTTAA
11058485 TTAACTAACTAAATGTTAAAAT
1 TTAA-TAACTAAAT-TTAAAAT
*
11058507 TTTATAACTAAATTTAAA
1 TTAATAACTAAATTTAAA
11058525 TAAAAAAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 9 0.53
22 3 0.18
ACGTcount: A:0.50, C:0.07, G:0.03, T:0.40
Consensus pattern (20 bp):
TTAATAACTAAATTTAAAAT
Found at i:11062832 original size:32 final size:32
Alignment explanation
Indices: 11062791--11062852 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
11062781 TTCTTAGTTT
11062791 ATTTCACAACTCCAATTTACCTATTTACCATC
1 ATTTCACAACTCCAATTTACCTATTTACCATC
*
11062823 ATTTCACAACTCCTATTTACCTATTTACCA
1 ATTTCACAACTCCAATTTACCTATTTACCA
11062853 AACATGCAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.31, C:0.31, G:0.00, T:0.39
Consensus pattern (32 bp):
ATTTCACAACTCCAATTTACCTATTTACCATC
Found at i:11064041 original size:29 final size:29
Alignment explanation
Indices: 11064009--11064069 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 29
11063999 ATAAAATATT
*
11064009 AATTATGTATTGTTTACCGAAATTATTAA
1 AATTATGTATTGTTTACCAAAATTATTAA
*
11064038 AATTATGTATTGTTTACTAAAATTATTAA
1 AATTATGTATTGTTTACCAAAATTATTAA
11064067 AAT
1 AAT
11064070 AAAGTGTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.41, C:0.05, G:0.08, T:0.46
Consensus pattern (29 bp):
AATTATGTATTGTTTACCAAAATTATTAA
Found at i:11076020 original size:3 final size:3
Alignment explanation
Indices: 11076012--11076045 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
11076002 TGTTTGATCC
11076012 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
11076046 AAGAAAATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:11076265 original size:19 final size:19
Alignment explanation
Indices: 11076241--11076278 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
11076231 TTGGAAATTC
11076241 TTCAAAATTCTAACTTCAA
1 TTCAAAATTCTAACTTCAA
11076260 TTCAAAATTCTAACTTCAA
1 TTCAAAATTCTAACTTCAA
11076279 AGTAAAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.21, G:0.00, T:0.37
Consensus pattern (19 bp):
TTCAAAATTCTAACTTCAA
Found at i:11080561 original size:20 final size:20
Alignment explanation
Indices: 11080536--11080575 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
11080526 CGTAAAATGA
*
11080536 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
11080556 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
11080576 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:11080570 original size:34 final size:35
Alignment explanation
Indices: 11080522--11080587 Score: 107
Period size: 34 Copynumber: 1.9 Consensus size: 35
11080512 CAGTAAAATA
*
11080522 TTTCCGTAAAATGATTT-CTGGAAAATGTTTTACT
1 TTTCCGTAAAATGATTTACTGGAAAATATTTTACT
*
11080556 TTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTCCGTAAAATGATTTACTGGAAAATATTTT
11080588 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.32, C:0.09, G:0.14, T:0.45
Consensus pattern (35 bp):
TTTCCGTAAAATGATTTACTGGAAAATATTTTACT
Found at i:11081402 original size:21 final size:21
Alignment explanation
Indices: 11081378--11081425 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
11081368 ATTTTTATAC
11081378 TTTTTATTATATAT-TTTCTGA
1 TTTTTATTATATATATTTCT-A
*
11081399 TTTTTA-TATATTTATTTCTA
1 TTTTTATTATATATATTTCTA
11081419 TTTTTAT
1 TTTTTAT
11081426 AAATTTTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 13 0.54
21 11 0.46
ACGTcount: A:0.23, C:0.04, G:0.02, T:0.71
Consensus pattern (21 bp):
TTTTTATTATATATATTTCTA
Found at i:11081408 original size:20 final size:20
Alignment explanation
Indices: 11081378--11081426 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 20
11081368 ATTTTTATAC
11081378 TTTTTAT-TATATATTTTCTGA
1 TTTTTATATATATA-TTTCT-A
*
11081399 TTTTTATATATTTATTTCTA
1 TTTTTATATATATATTTCTA
11081419 TTTTTATA
1 TTTTTATA
11081427 AATTTTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 9 0.35
21 12 0.46
22 5 0.19
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.69
Consensus pattern (20 bp):
TTTTTATATATATATTTCTA
Found at i:11081433 original size:21 final size:21
Alignment explanation
Indices: 11081392--11081431 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
11081382 TATTATATAT
*
11081392 TTTCTGATTTTTATATATTTA
1 TTTCTGATTTTTATAAATTTA
11081413 TTTCT-ATTTTTATAAATTT
1 TTTCTGATTTTTATAAATTT
11081432 TAAAATTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.68
Consensus pattern (21 bp):
TTTCTGATTTTTATAAATTTA
Found at i:11082302 original size:24 final size:24
Alignment explanation
Indices: 11082274--11082319 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
11082264 TTTCTAGAAG
* *
11082274 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
11082298 ATTTAGCATTTATTAGCATAAT
1 ATTTAGCATTTATTAGCATAAT
11082320 TTGTTTGACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.37, C:0.04, G:0.09, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:11084452 original size:23 final size:24
Alignment explanation
Indices: 11084404--11084455 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
11084394 GAGTTCTTTG
11084404 TTTTCGAGTTTTGGGGTTTAGTTT
1 TTTTCGAGTTTTGGGGTTTAGTTT
11084428 TTTTCGAGTTTTGGGGTTTAGTTT
1 TTTTCGAGTTTTGGGGTTTAGTTT
11084452 TTTT
1 TTTT
11084456 ATCTCCATCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.08, C:0.04, G:0.27, T:0.62
Consensus pattern (24 bp):
TTTTCGAGTTTTGGGGTTTAGTTT
Found at i:11088942 original size:29 final size:29
Alignment explanation
Indices: 11088883--11088952 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 29
11088873 GTTTGTTACC
*
11088883 ATCCCTTTTCATAATCGACAGCTGAAACT
1 ATCCCTTTTCATAATCGACAGCTCAAACT
* * *
11088912 ATCCCTTTTCATATTCGATATC-CAAAGCT
1 ATCCCTTTTCATAATCGACAGCTCAAA-CT
*
11088941 ATCCATTTTCAT
1 ATCCCTTTTCAT
11088953 TATTTGAGGG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 32 0.91
ACGTcount: A:0.29, C:0.27, G:0.07, T:0.37
Consensus pattern (29 bp):
ATCCCTTTTCATAATCGACAGCTCAAACT
Found at i:11102249 original size:37 final size:40
Alignment explanation
Indices: 11102153--11102292 Score: 128
Period size: 40 Copynumber: 3.5 Consensus size: 40
11102143 AACACACGAG
* *
11102153 TTTGGCACCCAGTGCCTCATCGGATAATTCGAAGTAATAA
1 TTTGGCACCCAGTGCCTCATCGGAAAACTCGAAGTAATAA
* *
11102193 TTTGACACCCAGTGTCTCATCGGCAAAACT-GAAGT-A-AA
1 TTTGGCACCCAGTGCCTCATCGG-AAAACTCGAAGTAATAA
* *
11102231 -TTGGCACCCAGTGCCTCATC-GAAATAATCTGAAGTAGTAA
1 TTTGGCACCCAGTGCCTCATCGGAAA-ACTC-GAAGTAATAA
* * * *
11102271 ATTGACACCTAGTGTCTCATCG
1 TTTGGCACCCAGTGCCTCATCG
11102293 ACTTGAAGTC
Statistics
Matches: 81, Mismatches: 11, Indels: 14
0.76 0.10 0.13
Matches are distributed among these distances:
35 3 0.04
36 3 0.04
37 18 0.22
38 7 0.09
39 1 0.01
40 28 0.35
41 21 0.26
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (40 bp):
TTTGGCACCCAGTGCCTCATCGGAAAACTCGAAGTAATAA
Found at i:11102290 original size:41 final size:41
Alignment explanation
Indices: 11102158--11102293 Score: 133
Period size: 41 Copynumber: 3.4 Consensus size: 41
11102148 ACGAGTTTGG
* * *
11102158 CACCCAGTGCCTCATCG-GATAAT-TCGAAGTAATAATTTGA
1 CACCCAGTGCCTCATCGAAATAATCT-GAAGTAGTAAATTGA
* * *
11102198 CACCCAGTGTCTCATCGGCAA-AA-CTG-A--AGTAAATTGG
1 CACCCAGTGCCTCATC-GAAATAATCTGAAGTAGTAAATTGA
11102235 CACCCAGTGCCTCATCGAAATAATCTGAAGTAGTAAATTGA
1 CACCCAGTGCCTCATCGAAATAATCTGAAGTAGTAAATTGA
* *
11102276 CACCTAGTGTCTCATCGA
1 CACCCAGTGCCTCATCGA
11102294 CTTGAAGTCA
Statistics
Matches: 78, Mismatches: 10, Indels: 15
0.76 0.10 0.15
Matches are distributed among these distances:
36 3 0.04
37 24 0.31
38 3 0.04
39 2 0.03
40 16 0.21
41 29 0.37
42 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.25
Consensus pattern (41 bp):
CACCCAGTGCCTCATCGAAATAATCTGAAGTAGTAAATTGA
Found at i:11104072 original size:15 final size:16
Alignment explanation
Indices: 11104054--11104096 Score: 54
Period size: 15 Copynumber: 2.7 Consensus size: 16
11104044 TTTGTTGTCG
11104054 TTGTTATTATTGTTA-
1 TTGTTATTATTGTTAC
11104069 TTGTTA-TATTGTTAC
1 TTGTTATTATTGTTAC
11104084 TTGCATTATTATT
1 TTG--TTATTATT
11104097 ATTTATGCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 8 0.33
15 9 0.38
17 3 0.12
18 4 0.17
ACGTcount: A:0.21, C:0.05, G:0.12, T:0.63
Consensus pattern (16 bp):
TTGTTATTATTGTTAC
Found at i:11109140 original size:21 final size:21
Alignment explanation
Indices: 11109116--11109228 Score: 61
Period size: 21 Copynumber: 5.4 Consensus size: 21
11109106 GGGCATGAGG
11109116 TGATCAGAGTAGCTCAAATTT
1 TGATCAGAGTAGCTCAAATTT
* * * **
11109137 TGATCAGATTAAG-GCATGA-GG
1 TGATCAGAGT-AGCTCA-AATTT
*
11109158 TGATCAGAGCAGCTCAAATTT
1 TGATCAGAGTAGCTCAAATTT
* ** * **
11109179 TGATCAGATTAGGGCATGA-GG
1 TGATCAGAGTAGCTCA-AATTT
*
11109200 TGATCAGAGCAGCTCAAATTT
1 TGATCAGAGTAGCTCAAATTT
11109221 TGATCAGA
1 TGATCAGA
11109229 TTGGGGCATG
Statistics
Matches: 61, Mismatches: 25, Indels: 12
0.62 0.26 0.12
Matches are distributed among these distances:
20 4 0.07
21 53 0.87
22 4 0.07
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (21 bp):
TGATCAGAGTAGCTCAAATTT
Found at i:11109155 original size:42 final size:42
Alignment explanation
Indices: 11109078--11109246 Score: 257
Period size: 42 Copynumber: 4.0 Consensus size: 42
11109068 AAGCCCAAAA
* * * *
11109078 AGAGCGGCTCAAATTTTGGATCAAAATGGGGCATGAGGTGATC
1 AGAGCAGCTCAAATTTT-GATCAGATTAGGGCATGAGGTGATC
* *
11109121 AGAGTAGCTCAAATTTTGATCAGATTAAGGCATGAGGTGATC
1 AGAGCAGCTCAAATTTTGATCAGATTAGGGCATGAGGTGATC
11109163 AGAGCAGCTCAAATTTTGATCAGATTAGGGCATGAGGTGATC
1 AGAGCAGCTCAAATTTTGATCAGATTAGGGCATGAGGTGATC
* *
11109205 AGAGCAGCTCAAATTTTGATCAGATTGGGGCATGTGGTGATC
1 AGAGCAGCTCAAATTTTGATCAGATTAGGGCATGAGGTGATC
11109247 TTTTTATACC
Statistics
Matches: 116, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
42 101 0.87
43 15 0.13
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.27
Consensus pattern (42 bp):
AGAGCAGCTCAAATTTTGATCAGATTAGGGCATGAGGTGATC
Found at i:11111900 original size:51 final size:51
Alignment explanation
Indices: 11111825--11111960 Score: 164
Period size: 51 Copynumber: 2.7 Consensus size: 51
11111815 AAGTGGAGCG
* * ** * *
11111825 GATTAAAGTTGAAGGCAATAAATCTTATCTCCTTGGCATTACAGTGGAACA
1 GATTAAAGCTAAAGGCAGCAAATCTTATCTCCCTGGCATTACAGCGGAACA
* * * * *
11111876 GATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTGGCATTACAGCGGAGCA
1 GATTAAAGCTAAAGGCAGCAAATCTTATCTCCCTGGCATTACAGCGGAACA
*
11111927 GATTAAAGCTGAAGGCAGCAAATCTTATCTCCCT
1 GATTAAAGCTAAAGGCAGCAAATCTTATCTCCCT
11111961 AGCGTTAAGA
Statistics
Matches: 69, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
51 69 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.27
Consensus pattern (51 bp):
GATTAAAGCTAAAGGCAGCAAATCTTATCTCCCTGGCATTACAGCGGAACA
Found at i:11112375 original size:44 final size:45
Alignment explanation
Indices: 11112129--11112424 Score: 234
Period size: 44 Copynumber: 6.6 Consensus size: 45
11112119 CATCATGGCG
* * * * * * *
11112129 AATCTTATCCCCCTGAAGTTGCAGCGGGGCATATTTAATAT-AC-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAACT
* * * * *
11112172 AAGTCTTATCTCCCTGAAATTGTAGTGGAGCAGACTAAAGATAGCG
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAACT
* * * * *
11112218 AATCTTATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTATAAATT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG--AT-AACT
* * *
11112266 ACATATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCG--TATCAA--
1 --A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAGAT-AACT
*
11112311 AAT-TTATCTCCCTGAAGTTGCAGTGGAGCA-AGTTGAAGATAAC-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CTGAAGATAACT
11112354 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAACT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAACT
*
11112399 AATCCTATCTCCCTGAAGTTGCAGTG
1 AATCTTATCTCCCTGAAGTTGCAGTG
11112425 AAGTGGATTA
Statistics
Matches: 203, Mismatches: 32, Indels: 34
0.75 0.12 0.13
Matches are distributed among these distances:
40 1 0.00
41 26 0.13
42 5 0.02
43 8 0.04
44 67 0.33
45 57 0.28
46 2 0.01
47 6 0.03
48 1 0.00
50 2 0.01
51 28 0.14
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.29
Consensus pattern (45 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAACT
Found at i:11122013 original size:51 final size:51
Alignment explanation
Indices: 11121952--11122054 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
11121942 AAATTAAAAG
11121952 ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
1 ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
11122003 ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
1 ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
11122054 A
1 A
11122055 GTAATTTTAG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.46, C:0.17, G:0.08, T:0.29
Consensus pattern (51 bp):
ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
Found at i:11122063 original size:33 final size:34
Alignment explanation
Indices: 11122005--11122110 Score: 105
Period size: 33 Copynumber: 3.2 Consensus size: 34
11121995 AACCAACAAT
* *
11122005 TATACATACACCAACAATGT-TTTTTAGGGT-AAA
1 TATACATAAACCAACAA-GTAATTTTAGGGTCAAA
*
11122038 TA-ACATTAAACCAACAAGTAATTTTA-GGTCAAT
1 TATACA-TAAACCAACAAGTAATTTTAGGGTCAAA
* * *
11122071 TATACATACACCAACAATTAATTTTA-GGTCAAT
1 TATACATAAACCAACAAGTAATTTTAGGGTCAAA
11122104 TATACAT
1 TATACAT
11122111 GCTTTATAAT
Statistics
Matches: 64, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
32 8 0.12
33 53 0.83
34 3 0.05
ACGTcount: A:0.42, C:0.16, G:0.08, T:0.33
Consensus pattern (34 bp):
TATACATAAACCAACAAGTAATTTTAGGGTCAAA
Found at i:11125206 original size:26 final size:27
Alignment explanation
Indices: 11125166--11125247 Score: 87
Period size: 26 Copynumber: 3.0 Consensus size: 27
11125156 TAAGAACATT
*
11125166 TTATGAAATTATATTTAATAATAATTA
1 TTATTAAATTATATTTAATAATAATTA
* *
11125193 TT-TTAAATTGTATTTAATCATATATT-
1 TTATTAAATTATATTTAATAATA-ATTA
* *
11125219 TTAATTAAAATATATTTAATATTAATTA
1 TT-ATTAAATTATATTTAATAATAATTA
11125247 T
1 T
11125248 AGTATCATAT
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
26 19 0.43
27 8 0.18
28 17 0.39
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.52
Consensus pattern (27 bp):
TTATTAAATTATATTTAATAATAATTA
Found at i:11125329 original size:18 final size:18
Alignment explanation
Indices: 11125301--11125351 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
11125291 ATTATTAAGA
11125301 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAATTATAT
11125318 ATTTTAATTAAA--ATAT
1 ATTTTAATTAAATTATAT
*
11125334 A-TTTAATAAAAATTATAT
1 ATTTTAAT-TAAATTATAT
11125352 TTAAATATGA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
15 6 0.21
16 8 0.28
17 5 0.17
18 10 0.34
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
ATTTTAATTAAATTATAT
Found at i:11125335 original size:16 final size:16
Alignment explanation
Indices: 11125301--11125353 Score: 56
Period size: 15 Copynumber: 3.2 Consensus size: 16
11125291 ATTATTAAGA
11125301 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
11125318 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
11125334 A-TTTAATAAAAATTAT
1 ATTTTAATTAAAA-TAT
11125350 ATTT
1 ATTT
11125354 AAATATGATT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
15 10 0.31
16 9 0.28
17 7 0.22
18 6 0.19
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:11125354 original size:16 final size:15
Alignment explanation
Indices: 11125314--11125355 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
11125304 TTATTAAATT
*
11125314 ATATATTTTAATTAAA
1 ATATA-TTTAATAAAA
11125330 ATATATTTAATAAAA
1 ATATATTTAATAAAA
11125345 ATTATATTTAA
1 A-TATATTTAA
11125356 ATATGATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATATATTTAATAAAA
Found at i:11125456 original size:156 final size:157
Alignment explanation
Indices: 11125290--11125604 Score: 569
Period size: 156 Copynumber: 2.0 Consensus size: 157
11125280 TAAGAATATG
11125290 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAAAATTATATTTA
1 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAAAATTATATTTA
*
11125355 AATATGATTAAATTATTTATTACTGACAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
66 AATATGATTAAAATATTTATTACTGACAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
11125420 AATCATTTACAAAAACAAATTTATGCT
131 AATCATTTACAAAAACAAATTTATGCT
* *
11125447 AATTA-TAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
1 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAAAATTATATTTA
*
11125511 AATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
66 AATATGATTAAAATATTTATTACTGACAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
* *
11125576 AATCATTTACCAAAACAATTTTATGCT
131 AATCATTTACAAAAACAAATTTATGCT
11125603 AA
1 AA
11125605 GGGTATTCTA
Statistics
Matches: 152, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
156 147 0.97
157 5 0.03
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.42
Consensus pattern (157 bp):
AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAAAATTATATTTA
AATATGATTAAAATATTTATTACTGACAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
AATCATTTACAAAAACAAATTTATGCT
Found at i:11125485 original size:18 final size:17
Alignment explanation
Indices: 11125457--11125491 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
11125447 AATTATAAGA
*
11125457 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
11125474 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
11125492 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:11125748 original size:16 final size:16
Alignment explanation
Indices: 11125727--11125762 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
11125717 GATTAGCTAT
11125727 TACACCTCTAATCTAA
1 TACACCTCTAATCTAA
11125743 TACACCTCTAATCTAA
1 TACACCTCTAATCTAA
11125759 TACA
1 TACA
11125763 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.31, G:0.00, T:0.31
Consensus pattern (16 bp):
TACACCTCTAATCTAA
Found at i:11127644 original size:14 final size:14
Alignment explanation
Indices: 11127625--11127666 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
11127615 AATCAGGTTC
11127625 CAACGGCCATATTG
1 CAACGGCCATATTG
* *
11127639 CAACGGTCATATTC
1 CAACGGCCATATTG
*
11127653 CAATGGCCATATTG
1 CAACGGCCATATTG
11127667 TAACAGTGAG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (14 bp):
CAACGGCCATATTG
Found at i:11127684 original size:28 final size:28
Alignment explanation
Indices: 11127612--11127690 Score: 77
Period size: 28 Copynumber: 2.8 Consensus size: 28
11127602 CAAAAAATTT
* * *
11127612 AACAATCAGGTTCCAACGGCCATATTGC
1 AACAGTCAGATTCCAATGGCCATATTGC
* * *
11127640 AACGGTCATATTCCAATGGCCATATTGT
1 AACAGTCAGATTCCAATGGCCATATTGC
* * *
11127668 AACAGTGAGATTTCAATGACCAT
1 AACAGTCAGATTCCAATGGCCAT
11127691 GTTTTTGCAT
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.27
Consensus pattern (28 bp):
AACAGTCAGATTCCAATGGCCATATTGC
Found at i:11146708 original size:396 final size:396
Alignment explanation
Indices: 11145975--11149144 Score: 5820
Period size: 396 Copynumber: 8.0 Consensus size: 396
11145965 AAATATGTTA
* *
11145975 TTCAAATGGTTCATTGGATGTTTGCACTCTGCATTCTAGGATTCTGGTGTTTCTAAGATCTGTTA
1 TTCAAATGGTTCATTGGATGTTTGCACTCTGAATTCTTGGATTCTGGTGTTTCTAAGATCTGTTA
* * *
11146040 CCTGGT-ATATCTTCAAAATCTTATTTACCACAACTCTTTCTCCAAGAAAACATGGAAACCAGTT
66 CCCGGTAATATCTTCACAATCTTATTTACCACAACTCTTTCTCCGAGAAAACATGGAAACCAGTT
11146104 TTTAATGATCTGCATGAGTTTCAAATACTGAAGTGACGAAAAAAGGGCAATTACATGAAATTTTT
131 TTTAATGATCTGCATGAGTTTCAAATACTGAAGTGACGAAAAAAGGGCAATTACATGAAATTTTT
*
11146169 AATCAGGATAGTGGTTAACTAATCTCAAAGGCATTTCGACATCTCATTTTCAGCTTCTTATTTAC
196 AATCAGGATAGTGGTTAACTAATCTCAAAGGCATTTCGACATCTCATTTTCAGCTTCATATTTAC
* * *
11146234 TAATATAGTAGTTTTATGTTGACTGTTGTCCTTAAGCTGTCCTTCATTGTTGCTGCACTTGTTTA
261 TAATATAGTAGTTTTATGTTGATTGTTGTCTTTAAGCTATCCTTCATTGTTGCTGCACTTGTTTA
*
11146299 CAATTGCGCTATTTACGAGGATACTGCAATTAGTTTCACCATTATGGTGTCATAGCTTAGTTTAA
326 CAATTGCGCTATTTACGAGGATACTGCAATTAGTTCCACCATTATGGTGTCATAGCTTAGTTTAA
11146364 TTTATT
391 TTTATT
11146370 TTCAAATGGTTCATTGGATGTTTGCACTCTGAATTCTTGGATTCTGGTGTTTCTAAGATCTGTTA
1 TTCAAATGGTTCATTGGATGTTTGCACTCTGAATTCTTGGATTCTGGTGTTTCTAAGATCTGTTA
* ** *
11146435 CCCGGAAATATCTTCACAATCTTATTTACTTCAACTCTTTCTCCGAGAAAACATAGAAACCAGTT
66 CCCGGTAATATCTTCACAATCTTATTTACCACAACTCTTTCTCCGAGAAAACATGGAAACCAGTT
11146500 TTTAATGATCTGCATGAGTTTCAAATACTGAAGTGACGAAAAAAGGGCAATTACATGAAATTTTT
131 TTTAATGATCTGCATGAGTTTCAAATACTGAAGTGACGAAAAAAGGGCAATTACATGAAATTTTT
11146565 AATCAGGATAGTGGTTAACTAATCTCAAAGGCATTTCGACATCTCATTTTCAGCTTCATATTTAC
196 AATCAGGATAGTGGTTAACTAATCTCAAAGGCATTTCGACATCTCATTTTCAGCTTCATATTTAC
11146630 TAATATAGTAGTTTTATGTTGATTGTTGTCTTTAAGCTATCCTTCATTGTTGCTGCACTTGTTTA
261 TAATATAGTAGTTTTATGTTGATTGTTGTCTTTAAGCTATCCTTCATTGTTGCTGCACTTGTTTA
* *
11146695 CAATTGTGCTATTTACGAGGATACTGCAATTAGTTTCACCATTATGGTGTCATAGCTTAGTTTAA
326 CAATTGCGCTATTTACGAGGATACTGCAATTAGTTCCACCATTATGGTGTCATAGCTTAGTTTAA
11146760 TTTATT
391 TTTATT
11146766 TTCAAATGGTTCATTGGATGTTTGCACTCTGAATTCTTGGATTCTGGTGTTTCTAAGATCTGTTA
1 TTCAAATGGTTCATTGGATGTTTGCACTCTGAATTCTTGGATTCTGGTGTTTCTAAGATCTGTTA
* *
11146831 CCTGGTAATATCTTCACAATCTTATTTACCACAACTCTTTCTCTGAGAAAACATGGAAACCAGTT
66 CCCGGTAATATCTTCACAATCTTATTTACCACAACTCTTTCTCCGAGAAAACATGGAAACCAGTT
* * *
11146896 TTTAATGATCTGCACGAGTTTCAAATAATGAAGTGACAAAAAAAGGGCAATTACATGAAATTTTT
131 TTTAATGATCTGCATGAGTTTCAAATACTGAAGTGACGAAAAAAGGGCAATTACATGAAATTTTT
11146961 AATCAGGATAGTGGTTAACTAATCTCAAAGGCATTTCGACATCTCATTTTCAGCTTCATATTTAC
196 AATCAGGATAGTGGTTAACTAATCTCAAAGGCATTTCGACATCTCATTTTCAGCTTCATATTTAC
11147026 TAATATAGTAGTTTTATGTTGATTGTTGTCTTTAAGCTATCCTTCATTGTTGCTGCACTTGTTTA
261 TAATATAGTAGTTTTATGTTGATTGTTGTCTTTAAGCTATCCTTCATTGTTGCTGCACTTGTTTA
*
11147091 CAATTGTGCTATTTACGAGGATACTGCAATTAGTTCCACCATTATGGTGTCATAGCTTAGTTTAA
326 CAATTGCGCTATTTACGAGGATACTGCAATTAGTTCCACCATTATGGTGTCATAGCTTAGTTTAA
11147156 TTTATT
391 TTTATT
*
11147162 TTCAAATGGTTCATTGGATGTTTGCACTCTAAATTCTTGGATTCTGGTGTTTCTAAGATCTGTTA
1 TTCAAATGGTTCATTGGATGTTTGCACTCTGAATTCTTGGATTCTGGTGTTTCTAAGATCTGTTA
** *
11147227 CCCGGTAATATCTTCACAATCTTATTTACTTCAACTCTTTCTCCGAGAAAACACGGAAACCAGTT
66 CCCGGTAATATCTTCACAATCTTATTTACCACAACTCTTTCTCCGAGAAAACATGGAAACCAGTT
11147292 TTTAATGATCTGCATGAGTTTCAAATACTGAAGTGACGAAAAAAGGGCAATTACATGAAATTTTT
131 TTTAATGATCTGCATGAGTTTCAAATACTGAAGTGACGAAAAAAGGGCAATTACATGAAATTTTT
11147357 AATCAGGATAGTGGTTAACTAATCTCAAAGGCATTTCGACATCTCATTTTCAGCTTCATATTTAC
196 AATCAGGATAGTGGTTAACTAATCTCAAAGGCATTTCGACATCTCATTTTCAGCTTCATATTTAC
* * *
11147422 TAATATAGTAGTTTTATGTTGACTGTTCTCTTTAAGCTGTCCTTCATTGTTGCTGCACTTGTTTA
261 TAATATAGTAGTTTTATGTTGATTGTTGTCTTTAAGCTATCCTTCATTGTTGCTGCACTTGTTTA
*
11147487 CAATTGCGCTATTTACGAGGATACTGCAATTAGTTTCACCATTATGGTGTCATAGCTTAGTTTAA
326 CAATTGCGCTATTTACGAGGATACTGCAATTAGTTCCACCATTATGGTGTCATAGCTTAGTTTAA
11147552 TTTATT
391 TTTATT
11147558 TTCAAATGGTTCATTGGATGTTTGCACTCTGAATTCTTGGATTCTGGTGTTTCTAAGATCTGTTA
1 TTCAAATGGTTCATTGGATGTTTGCACTCTGAATTCTTGGATTCTGGTGTTTCTAAGATCTGTTA
* *
11147623 CCTGGTAATATCTTCACAATCTTATTTACCACAACTCTTTCTCTGAGAAAACATGGAAACCAGTT
66 CCCGGTAATATCTTCACAATCTTATTTACCACAACTCTTTCTCCGAGAAAACATGGAAACCAGTT
* * *
11147688 TTTAATGATCTGCACGAGTTTCAAATAATGAAGTGACAAAAAAAGGGCAATTACATGAAATTTTT
131 TTTAATGATCTGCATGAGTTTCAAATACTGAAGTGACGAAAAAAGGGCAATTACATGAAATTTTT
11147753 AATCAGGATAGTGGTTAACTAATCTCAAAGGCATTTCGACATCTCATTTTCAGCTTCATATTTAC
196 AATCAGGATAGTGGTTAACTAATCTCAAAGGCATTTCGACATCTCATTTTCAGCTTCATATTTAC
11147818 TAATATAGTAGTTTTATGTTGATTGTTGTCTTTAAGCTATCCTTCATTGTTGCTGCACTTGTTTA
261 TAATATAGTAGTTTTATGTTGATTGTTGTCTTTAAGCTATCCTTCATTGTTGCTGCACTTGTTTA
*
11147883 CAATTGTGCTATTTACGAGGATACTGCAATTAGTTCCACCATTATGGTGTCATAGCTTAGTTTAA
326 CAATTGCGCTATTTACGAGGATACTGCAATTAGTTCCACCATTATGGTGTCATAGCTTAGTTTAA
11147948 TTTATT
391 TTTATT
*
11147954 TTCAAATGGTTCATTGGATGTTTGCACTCTAAATTCTTGGATTCTGGTGTTTCTAAGATCTGTTA
1 TTCAAATGGTTCATTGGATGTTTGCACTCTGAATTCTTGGATTCTGGTGTTTCTAAGATCTGTTA
** *
11148019 CCCGGTAATATCTTCACAATCTTATTTACTTCAAATCTTTCTCCGAGAAAACATGGAAACCAGTT
66 CCCGGTAATATCTTCACAATCTTATTTACCACAACTCTTTCTCCGAGAAAACATGGAAACCAGTT
11148084 TTTAATGATCTGCATGAGTTTCAAATACTGAAGTGACGAAAAAAGGGCAATTACATGAAATTTTT
131 TTTAATGATCTGCATGAGTTTCAAATACTGAAGTGACGAAAAAAGGGCAATTACATGAAATTTTT
*
11148149 AATCAGGATAGTGGTTAACTAATCTCAAAGGCGTTTCGACATCTCATTTTCAGCTTCATATTTAC
196 AATCAGGATAGTGGTTAACTAATCTCAAAGGCATTTCGACATCTCATTTTCAGCTTCATATTTAC
* *
11148214 TAATATAGTAGTTTTATGTTGACTGTTGTCTTTAAGCTGTCCTTCATTGTTGCTGCACTTGTTTA
261 TAATATAGTAGTTTTATGTTGATTGTTGTCTTTAAGCTATCCTTCATTGTTGCTGCACTTGTTTA
11148279 CAATTGCGCTATTTACGAGGATACTGCAATTAGTTCCACCATTATGGTGTCATAGCTTAGTTTAA
326 CAATTGCGCTATTTACGAGGATACTGCAATTAGTTCCACCATTATGGTGTCATAGCTTAGTTTAA
11148344 TTTATT
391 TTTATT
11148350 TTCAAATGGTTCATTGGATGTTTGCACTCTGAATTCTTGGATTCTGGTGTTTCTAAGATCTGTTA
1 TTCAAATGGTTCATTGGATGTTTGCACTCTGAATTCTTGGATTCTGGTGTTTCTAAGATCTGTTA
* *
11148415 CCTGGTAATATCTTCACAATCTTATTTACCACAACTCTTTCTCTGAGAAAACATGGAAACCAGTT
66 CCCGGTAATATCTTCACAATCTTATTTACCACAACTCTTTCTCCGAGAAAACATGGAAACCAGTT
* * *
11148480 TTTAATGATCTGCACGAGTTTCAAATAATGAAGTGACAAAAAAAGGGCAATTACATGAAATTTTT
131 TTTAATGATCTGCATGAGTTTCAAATACTGAAGTGACGAAAAAAGGGCAATTACATGAAATTTTT
11148545 AATCAGGATAGTGGTTAACTAATCTCAAAGGCATTTCGACATCTCATTTTCAGCTTCATATTTAC
196 AATCAGGATAGTGGTTAACTAATCTCAAAGGCATTTCGACATCTCATTTTCAGCTTCATATTTAC
11148610 TAATATAGTAGTTTTATGTTGATTGTTGTCTTTAAGCTATCCTTCATTGTTGCTGCACTTGTTTA
261 TAATATAGTAGTTTTATGTTGATTGTTGTCTTTAAGCTATCCTTCATTGTTGCTGCACTTGTTTA
*
11148675 CAATTGTGCTATTTACGAGGATACTGCAATTAGTTCCACCATTATGGTGTCATAGCTTAGTTTAA
326 CAATTGCGCTATTTACGAGGATACTGCAATTAGTTCCACCATTATGGTGTCATAGCTTAGTTTAA
11148740 TTTATT
391 TTTATT
*
11148746 TTCAAATGGTTCATTGGATGTTTGCACTCTAAATTCTTGGATTCTGGTGTTTCTAAGATCTGTTA
1 TTCAAATGGTTCATTGGATGTTTGCACTCTGAATTCTTGGATTCTGGTGTTTCTAAGATCTGTTA
** * *
11148811 CCCGGTAATATCTTCACAATCTTATTTACTTCAAATCTTTCTCCGAGAAAATATGGAAACCAGTT
66 CCCGGTAATATCTTCACAATCTTATTTACCACAACTCTTTCTCCGAGAAAACATGGAAACCAGTT
11148876 TTTAATGATCTGCATGAGTTTCAAATACTGAAGTGACGAAAAAAGGGCAATTACATGAAATTTTT
131 TTTAATGATCTGCATGAGTTTCAAATACTGAAGTGACGAAAAAAGGGCAATTACATGAAATTTTT
11148941 AATCAGGATAGTGGTTAACTAATCTCAAAGGCATTTCGACATCTCATTTTCAGCTTCATATTTAC
196 AATCAGGATAGTGGTTAACTAATCTCAAAGGCATTTCGACATCTCATTTTCAGCTTCATATTTAC
* *
11149006 TAATATAGTAGTTTTATGTTGATTGTTGTCTCTAAGCTATCATTCATTGTTGCTGCACTTGTTTA
261 TAATATAGTAGTTTTATGTTGATTGTTGTCTTTAAGCTATCCTTCATTGTTGCTGCACTTGTTTA
*
11149071 CAATTGCGCTATTTATGAGGATACTGCAATTAGTTCCACCATTATGGTGTCATAGCTTAGTTTAA
326 CAATTGCGCTATTTACGAGGATACTGCAATTAGTTCCACCATTATGGTGTCATAGCTTAGTTTAA
11149136 TTTATT
391 TTTATT
11149142 TTC
1 TTC
11149145 CATTAATTTT
Statistics
Matches: 2682, Mismatches: 92, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
395 67 0.02
396 2615 0.98
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.39
Consensus pattern (396 bp):
TTCAAATGGTTCATTGGATGTTTGCACTCTGAATTCTTGGATTCTGGTGTTTCTAAGATCTGTTA
CCCGGTAATATCTTCACAATCTTATTTACCACAACTCTTTCTCCGAGAAAACATGGAAACCAGTT
TTTAATGATCTGCATGAGTTTCAAATACTGAAGTGACGAAAAAAGGGCAATTACATGAAATTTTT
AATCAGGATAGTGGTTAACTAATCTCAAAGGCATTTCGACATCTCATTTTCAGCTTCATATTTAC
TAATATAGTAGTTTTATGTTGATTGTTGTCTTTAAGCTATCCTTCATTGTTGCTGCACTTGTTTA
CAATTGCGCTATTTACGAGGATACTGCAATTAGTTCCACCATTATGGTGTCATAGCTTAGTTTAA
TTTATT
Found at i:11152987 original size:8 final size:9
Alignment explanation
Indices: 11152967--11153013 Score: 60
Period size: 9 Copynumber: 5.3 Consensus size: 9
11152957 CCATCCTTTG
*
11152967 AAAATAAAA
1 AAAATATAA
*
11152976 AAAATATTA
1 AAAATATAA
11152985 AAAATATAA
1 AAAATATAA
*
11152994 AAATTATAA
1 AAAATATAA
11153003 AAAATA-AA
1 AAAATATAA
11153011 AAA
1 AAA
11153014 CTTTAAAATA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
8 5 0.15
9 28 0.85
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (9 bp):
AAAATATAA
Found at i:11152990 original size:18 final size:18
Alignment explanation
Indices: 11152967--11153013 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
11152957 CCATCCTTTG
*
11152967 AAAATAAAAAAAATATTA
1 AAAATAAAAAAAATATAA
* *
11152985 AAAATATAAAAATTATAA
1 AAAATAAAAAAAATATAA
11153003 AAAATAAAAAA
1 AAAATAAAAAA
11153014 CTTTAAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (18 bp):
AAAATAAAAAAAATATAA
Found at i:11153057 original size:6 final size:6
Alignment explanation
Indices: 11153043--11153072 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
11153033 ATCTAAATCT
11153043 AAATCTA AAATTA AAATTA AAATTA AAATT
1 AAAT-TA AAATTA AAATTA AAATTA AAATT
11153073 TTTATTAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 19 0.83
7 4 0.17
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (6 bp):
AAATTA
Found at i:11155653 original size:12 final size:11
Alignment explanation
Indices: 11155612--11155660 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
11155602 ATACTAGAAT
11155612 AAAAA-AAAAG
1 AAAAAGAAAAG
11155622 AAAAAGAAGAA-
1 AAAAAGAA-AAG
*
11155633 AAGAAGAAAAG
1 AAAAAGAAAAG
11155644 AGAAAAGAAAAG
1 A-AAAAGAAAAG
11155656 AAAAA
1 AAAAA
11155661 CCTAAACTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
10 7 0.21
11 14 0.42
12 12 0.36
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:11159043 original size:10 final size:10
Alignment explanation
Indices: 11159028--11159152 Score: 83
Period size: 9 Copynumber: 13.4 Consensus size: 10
11159018 AATGTGGCAA
11159028 AAAAAATTAT
1 AAAAAATTAT
11159038 AAAAAA--AT
1 AAAAAATTAT
11159046 -AAAAATTA-
1 AAAAAATTAT
*
11159054 ATAAAA-TAT
1 AAAAAATTAT
11159063 AAAAAATTAT
1 AAAAAATTAT
11159073 -AAAAATTAT
1 AAAAAATTAT
11159082 AAAAAA-TA-
1 AAAAAATTAT
**
11159090 AAAAAAACAT
1 AAAAAATTAT
11159100 AAAAACA-TA-
1 AAAAA-ATTAT
*
11159109 AAAAAATTGT
1 AAAAAATTAT
**
11159119 AAAATTTTAT
1 AAAAAATTAT
* *
11159129 -AAATATCAT
1 AAAAAATTAT
11159138 AAAAAAATTAT
1 -AAAAAATTAT
11159149 AAAA
1 AAAA
11159153 TGCATCAAAA
Statistics
Matches: 90, Mismatches: 12, Indels: 26
0.70 0.09 0.20
Matches are distributed among these distances:
7 5 0.06
8 11 0.12
9 35 0.39
10 31 0.34
11 8 0.09
ACGTcount: A:0.71, C:0.02, G:0.01, T:0.26
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:11159122 original size:18 final size:18
Alignment explanation
Indices: 11159044--11159122 Score: 79
Period size: 19 Copynumber: 4.3 Consensus size: 18
11159034 TTATAAAAAA
* *
11159044 ATAAAAATTAATAAAA-T
1 ATAAAAAATAAAAAAATT
*
11159061 ATAAAAAATTATAAAAATT
1 ATAAAAAA-TAAAAAAATT
**
11159080 ATAAAAAATAAAAAAAAC
1 ATAAAAAATAAAAAAATT
11159098 ATAAAAACATAAAAAAATT
1 ATAAAAA-ATAAAAAAATT
*
11159117 GTAAAA
1 ATAAAA
11159123 TTTTATAAAT
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
17 7 0.14
18 20 0.40
19 23 0.46
ACGTcount: A:0.73, C:0.03, G:0.01, T:0.23
Consensus pattern (18 bp):
ATAAAAAATAAAAAAATT
Found at i:11159148 original size:20 final size:21
Alignment explanation
Indices: 11159125--11159164 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
11159115 TTGTAAAATT
11159125 TTATAAATAT-CAT-AAAAAAA
1 TTATAAA-ATGCATCAAAAAAA
11159145 TTATAAAATGCATCAAAAAA
1 TTATAAAATGCATCAAAAAA
11159165 GATATTTAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.11
20 10 0.56
21 6 0.33
ACGTcount: A:0.62, C:0.07, G:0.03, T:0.28
Consensus pattern (21 bp):
TTATAAAATGCATCAAAAAAA
Found at i:11159472 original size:20 final size:22
Alignment explanation
Indices: 11159433--11159472 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
11159423 CTATATTTCT
*
11159433 ATATATTTTATAATACTTTACA
1 ATATATTTTACAATACTTTACA
11159455 ATAT-TTTTACAATA-TTTA
1 ATATATTTTACAATACTTTA
11159473 TATTTTTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 9 0.53
22 4 0.24
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (22 bp):
ATATATTTTACAATACTTTACA
Found at i:11159499 original size:11 final size:10
Alignment explanation
Indices: 11159485--11159539 Score: 53
Period size: 9 Copynumber: 5.6 Consensus size: 10
11159475 TTTTTCTAAT
11159485 TTTTTAATAAA
1 TTTTTAAT-AA
11159496 TTTTTAAT-A
1 TTTTTAATAA
11159505 TTTTTAATTAA
1 TTTTTAA-TAA
**
11159516 AATTTAATAA
1 TTTTTAATAA
11159526 -TTTT-ATAA
1 TTTTTAATAA
11159534 TTTTTA
1 TTTTTA
11159540 TTGAAATTTC
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
8 4 0.11
9 15 0.41
10 4 0.11
11 14 0.38
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
TTTTTAATAA
Found at i:11159508 original size:20 final size:20
Alignment explanation
Indices: 11159476--11159539 Score: 64
Period size: 20 Copynumber: 3.3 Consensus size: 20
11159466 ATATTTATAT
11159476 TTTTCTAAT-TTTTTAATAAA
1 TTTT-TAATATTTTTAATAAA
11159496 TTTTTAATATTTTTAATTAAA
1 TTTTTAATATTTTTAA-TAAA
* *
11159517 -ATTTAATAATTTT-AT-AA
1 TTTTTAATATTTTTAATAAA
11159534 TTTTTA
1 TTTTTA
11159540 TTGAAATTTC
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
17 2 0.05
18 5 0.13
19 5 0.13
20 22 0.58
21 4 0.11
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (20 bp):
TTTTTAATATTTTTAATAAA
Found at i:11159537 original size:28 final size:31
Alignment explanation
Indices: 11159487--11159548 Score: 76
Period size: 28 Copynumber: 2.1 Consensus size: 31
11159477 TTTCTAATTT
*
11159487 TTTAATAAATTTTTAATATTTTTAATTAAAA
1 TTTAATAAATTTTTAATAATTTTAATTAAAA
* *
11159518 TTTAAT-AA-TTTT-ATAATTTTTATTGAAA
1 TTTAATAAATTTTTAATAATTTTAATTAAAA
11159546 TTT
1 TTT
11159549 CTTTTTTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 16 0.57
29 4 0.14
30 2 0.07
31 6 0.21
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (31 bp):
TTTAATAAATTTTTAATAATTTTAATTAAAA
Found at i:11159832 original size:88 final size:88
Alignment explanation
Indices: 11159679--11159847 Score: 243
Period size: 88 Copynumber: 1.9 Consensus size: 88
11159669 AGCTTTTTTG
* * *
11159679 ATGCATTTTGGCAATTCAAATACCCAATTGAGTGAAAAAAAAAAGTAGGAGCTTAATTGCTTTTT
1 ATGCATTTTGGAAATTCAAATACCCAATTAAGTGAAAAAAAAAAGCAGGAGCTTAATTGCTTTTT
*
11159744 TTGAAAAAGTTTGAGGATCTTTA
66 TTAAAAAAGTTTGAGGATCTTTA
* * *
11159767 ATGCATTTT-GAAATTTCAAGTACCCAATTAAGTGCAAAAAAAAAGGCAGGGGCTTAATTGC-TT
1 ATGCATTTTGGAAA-TTCAAATACCCAATTAAGTG-AAAAAAAAAAGCAGGAGCTTAATTGCTTT
11159830 TTTTAAAAAAGTTTGAGG
64 TTTTAAAAAAGTTTGAGG
11159848 GCTTTTTACA
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
87 3 0.04
88 46 0.64
89 23 0.32
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.33
Consensus pattern (88 bp):
ATGCATTTTGGAAATTCAAATACCCAATTAAGTGAAAAAAAAAAGCAGGAGCTTAATTGCTTTTT
TTAAAAAAGTTTGAGGATCTTTA
Found at i:11168685 original size:3 final size:3
Alignment explanation
Indices: 11168677--11168703 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
11168667 AGAAAATATT
11168677 GTA GTA GTA GTA GTA GTA GTA GTA GTA
1 GTA GTA GTA GTA GTA GTA GTA GTA GTA
11168704 CTAGAGTTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
GTA
Found at i:11179055 original size:215 final size:214
Alignment explanation
Indices: 11178684--11179117 Score: 796
Period size: 215 Copynumber: 2.0 Consensus size: 214
11178674 ATGTCTTAAT
11178684 ACCTTGTTTCTATAAACTGAACCCATACATATTTTATTAAATATTTACTGAGTGTTATGTGGATC
1 ACCTTGTTTCTATAAACTGAACCCATACATATTTTATTAAATATTTACTGAGTGTTATGTGGATC
11178749 ATATTAAAAATTTGGTTAAGAAATTTTAACGTTTAAATATTAATTAAATGAAAAGGACTAATTTG
66 ATATTAAAAATTTGGTTAAGAAATTTTAACGTTTAAATATTAATTAAATGAAAAGGACTAATTTG
* *
11178814 TAAAGGTCGTAAAAGTTAATTTTCATTTATTTAAGGTGTTAAATTAATAATATTATAGGATTGGG
131 CAAAAGTCGTAAAAGTTAATTTTCATTTATTTAAGGTGTTAAATTAATAATATTATAGGATT-GG
*
11178879 GGGGTTTATTAGAAAGATTG
195 GGGATTTATTAGAAAGATTG
* *
11178899 ACCTTGTTTCTATAATCTGAACTCATACATATTTTATTAAATATTTACTGAGTGTTATGTGGATC
1 ACCTTGTTTCTATAAACTGAACCCATACATATTTTATTAAATATTTACTGAGTGTTATGTGGATC
11178964 ATATTAAAAATTTGGTTAAGAAATTTTAACGTTTAAATATTAATTAAATGAAAAGGACTAATTTG
66 ATATTAAAAATTTGGTTAAGAAATTTTAACGTTTAAATATTAATTAAATGAAAAGGACTAATTTG
*
11179029 CAAAAGTCGTAAAAGTTAATTTTCATTTATTTAAGGTGTTAAATTAATAATATTATAGGGTTGGG
131 CAAAAGTCGTAAAAGTTAATTTTCATTTATTTAAGGTGTTAAATTAATAATATTATAGGATTGGG
*
11179094 GGATTTATTAGGAAGATTG
196 GGATTTATTAGAAAGATTG
11179113 ACCTT
1 ACCTT
11179118 TGGTTGTTTA
Statistics
Matches: 212, Mismatches: 7, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
214 25 0.12
215 187 0.88
ACGTcount: A:0.37, C:0.07, G:0.16, T:0.40
Consensus pattern (214 bp):
ACCTTGTTTCTATAAACTGAACCCATACATATTTTATTAAATATTTACTGAGTGTTATGTGGATC
ATATTAAAAATTTGGTTAAGAAATTTTAACGTTTAAATATTAATTAAATGAAAAGGACTAATTTG
CAAAAGTCGTAAAAGTTAATTTTCATTTATTTAAGGTGTTAAATTAATAATATTATAGGATTGGG
GGATTTATTAGAAAGATTG
Found at i:11180083 original size:45 final size:45
Alignment explanation
Indices: 11180034--11180196 Score: 184
Period size: 45 Copynumber: 3.6 Consensus size: 45
11180024 ACCAGAAACA
*
11180034 AGTAAGACCATAGCTGAAAGACATTATGACATCACGATTCTATCG
1 AGTAAGACCATAGCTGAAAGACATTATGACATCACGATTCTAACG
* *
11180079 AGTAAGACCATAGCAGAAAGACGTTATGGA-ATCACGATTCTAACG
1 AGTAAGACCATAGCTGAAAGACATTAT-GACATCACGATTCTAACG
* * ** * * * *
11180124 AGTAAGAACATAGTTGAAAGACGCTATGACATCATGAATCAAAAG
1 AGTAAGACCATAGCTGAAAGACATTATGACATCACGATTCTAACG
* * *
11180169 AATAAGACCATAGTTAAAAGACATTATG
1 AGTAAGACCATAGCTGAAAGACATTATG
11180197 GCAACACAAC
Statistics
Matches: 100, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
44 2 0.02
45 96 0.96
46 2 0.02
ACGTcount: A:0.43, C:0.16, G:0.19, T:0.22
Consensus pattern (45 bp):
AGTAAGACCATAGCTGAAAGACATTATGACATCACGATTCTAACG
Found at i:11180189 original size:90 final size:90
Alignment explanation
Indices: 11180034--11180197 Score: 204
Period size: 90 Copynumber: 1.8 Consensus size: 90
11180024 ACCAGAAACA
* * * * ** *
11180034 AGTAAGACCATAGCTGAAAGACATTATGACATCACGATTCTATCGAGTAAGACCATAGCAGAAAG
1 AGTAAGAACATAGCTGAAAGACACTATGACATCACGAATCAAAAGAATAAGACCATAGCAGAAAG
*
11180099 ACGTTATGGAATCACGATTCTAACG
66 ACATTATGGAATCACGATTCTAACG
* * * *
11180124 AGTAAGAACATAGTTGAAAGACGCTATGACATCATGAATCAAAAGAATAAGACCATAGTTA-AAA
1 AGTAAGAACATAGCTGAAAGACACTATGACATCACGAATCAAAAGAATAAGACCATAG-CAGAAA
11180188 GACATTATGG
65 GACATTATGG
11180198 CAACACAACA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
90 60 0.98
91 1 0.02
ACGTcount: A:0.43, C:0.16, G:0.20, T:0.22
Consensus pattern (90 bp):
AGTAAGAACATAGCTGAAAGACACTATGACATCACGAATCAAAAGAATAAGACCATAGCAGAAAG
ACATTATGGAATCACGATTCTAACG
Found at i:11184745 original size:85 final size:85
Alignment explanation
Indices: 11184607--11184764 Score: 244
Period size: 85 Copynumber: 1.9 Consensus size: 85
11184597 ATCTGTGTCT
* * *
11184607 TATTTTTCTTTCTTTTTCTTCACGATCTTTCTACATTTCCATTATCAATGTTTAGTTTTTAGCAA
1 TATTTTTCTTTCTTTTTCTTCACGATCTTTCTACATTGCCATTATCAACGTTTAGTTTTTAACAA
11184672 ATTGGTATTAGAGTGTGTTC
66 ATTGGTATTAGAGTGTGTTC
*** * *
11184692 TATTTTTCTTTCTTTTTCTTTGTGTTCTTTCTACATTGCCATTATCGACGTTTAGTTTTTAACAA
1 TATTTTTCTTTCTTTTTCTTCACGATCTTTCTACATTGCCATTATCAACGTTTAGTTTTTAACAA
11184757 ATTGGTAT
66 ATTGGTAT
11184765 CAGATTTTTT
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
85 65 1.00
ACGTcount: A:0.19, C:0.15, G:0.11, T:0.54
Consensus pattern (85 bp):
TATTTTTCTTTCTTTTTCTTCACGATCTTTCTACATTGCCATTATCAACGTTTAGTTTTTAACAA
ATTGGTATTAGAGTGTGTTC
Found at i:11187321 original size:23 final size:23
Alignment explanation
Indices: 11187289--11187343 Score: 92
Period size: 23 Copynumber: 2.4 Consensus size: 23
11187279 TTTACCATAC
* *
11187289 AAGAAGAGATGGAATCGCTCCAT
1 AAGAACAGATGGAATCACTCCAT
11187312 AAGAACAGATGGAATCACTCCAT
1 AAGAACAGATGGAATCACTCCAT
11187335 AAGAACAGA
1 AAGAACAGA
11187344 ACATGAGATC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.45, C:0.18, G:0.22, T:0.15
Consensus pattern (23 bp):
AAGAACAGATGGAATCACTCCAT
Found at i:11189022 original size:29 final size:30
Alignment explanation
Indices: 11188963--11189020 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
11188953 TCCGAGTCTT
*
11188963 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
11188993 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
11189021 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:11189451 original size:50 final size:50
Alignment explanation
Indices: 11189338--11189579 Score: 270
Period size: 50 Copynumber: 4.7 Consensus size: 50
11189328 ATTTGGGTAA
* * *
11189338 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
11189394 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * * *
11189444 AGAGGTCCCATGTAAGACCATGTCTGGGATATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
11189494 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
** * *
11189544 AGAACATCCCATATAAGACCATGTCTGAGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
11189580 TTTGGCATGT
Statistics
Matches: 164, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 89 0.54
51 29 0.18
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.24
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:11189526 original size:100 final size:103
Alignment explanation
Indices: 11189338--11189587 Score: 337
Period size: 100 Copynumber: 2.4 Consensus size: 103
11189328 ATTTGGGTAA
11189338 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
11189403 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * * *
11189444 AGAGGTCCCATGTAAGACCATGTCTGGGATATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
11189506 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* * * *
11189544 AGAACATCCCATATAAGACCATGTCTGAGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
11189588 GTTATTATCA
Statistics
Matches: 129, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.40
101 36 0.28
105 2 0.02
106 39 0.30
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:11192116 original size:24 final size:24
Alignment explanation
Indices: 11192088--11192139 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
11192078 TTTCTAGAAG
*
11192088 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGTATTTATTAGCATAATAT
11192112 ATTTAGTATTTATTAGCATAATAT
1 ATTTAGTATTTATTAGCATAATAT
11192136 ATTT
1 ATTT
11192140 GACATAGATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.37, C:0.02, G:0.08, T:0.54
Consensus pattern (24 bp):
ATTTAGTATTTATTAGCATAATAT
Found at i:11196287 original size:23 final size:24
Alignment explanation
Indices: 11196261--11196311 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
11196251 ATAAATTTCC
* *
11196261 ATTT-ATTTTAATATTTTTTATAT
1 ATTTGATTTTAATATTGTATATAT
*
11196284 ATTTTGATTTTATTATTGTATATAT
1 A-TTTGATTTTAATATTGTATATAT
11196309 ATT
1 ATT
11196312 AGTAATGTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
23 1 0.04
24 5 0.22
25 17 0.74
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (24 bp):
ATTTGATTTTAATATTGTATATAT
Found at i:11199328 original size:34 final size:35
Alignment explanation
Indices: 11199284--11199350 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
11199274 CAGTAAAATA
*
11199284 TTTTCCGTAAAATGATTT-CTAGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTAGAAAATATTTTAC
* *
11199318 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTAGAAAATATTTT
11199351 CTGGTATTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTAGAAAATATTTTAC
Found at i:11199763 original size:21 final size:21
Alignment explanation
Indices: 11199739--11199790 Score: 104
Period size: 21 Copynumber: 2.5 Consensus size: 21
11199729 AAGGGTAAGA
11199739 CATTTTCCCTAAAATGTAACC
1 CATTTTCCCTAAAATGTAACC
11199760 CATTTTCCCTAAAATGTAACC
1 CATTTTCCCTAAAATGTAACC
11199781 CATTTTCCCT
1 CATTTTCCCT
11199791 TGTTTTGGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.29, C:0.31, G:0.04, T:0.37
Consensus pattern (21 bp):
CATTTTCCCTAAAATGTAACC
Found at i:11200253 original size:12 final size:11
Alignment explanation
Indices: 11200238--11200280 Score: 50
Period size: 12 Copynumber: 3.7 Consensus size: 11
11200228 AATATATAAT
*
11200238 TTAATAACATTC
1 TTAATAA-ATTA
11200250 TTAATATAATTA
1 TTAATA-AATTA
*
11200262 TTAATAAAATA
1 TTAATAAATTA
11200273 TTAATAAA
1 TTAATAAA
11200281 AATCATAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
11 12 0.43
12 15 0.54
13 1 0.04
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (11 bp):
TTAATAAATTA
Found at i:11200282 original size:12 final size:12
Alignment explanation
Indices: 11200250--11200308 Score: 52
Period size: 12 Copynumber: 5.0 Consensus size: 12
11200240 AATAACATTC
* *
11200250 TTAATATAATTA
1 TTAATAAAAATA
11200262 TTAAT-AAAATA
1 TTAATAAAAATA
11200273 TTAATAAAAATCA
1 TTAATAAAAAT-A
*
11200286 -TAATATATAATA
1 TTAATA-AAAATA
11200298 TT-ATAAAAATA
1 TTAATAAAAATA
11200309 ATATATAACC
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
11 14 0.36
12 19 0.49
13 6 0.15
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (12 bp):
TTAATAAAAATA
Found at i:11200289 original size:23 final size:23
Alignment explanation
Indices: 11200263--11200316 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
11200253 ATATAATTAT
*
11200263 TAATAA-AATATTAATAAAAATCA
1 TAATAATAATATT-ATAAAAATAA
11200286 TAATATATAATATTATAAAAATAA
1 TAATA-ATAATATTATAAAAATAA
11200310 TATATAA
1 TA-ATAA
11200317 CCTACTTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 5 0.19
24 13 0.48
25 9 0.33
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (23 bp):
TAATAATAATATTATAAAAATAA
Found at i:11202940 original size:34 final size:34
Alignment explanation
Indices: 11202901--11203044 Score: 173
Period size: 34 Copynumber: 4.2 Consensus size: 34
11202891 ACGCTTGTCG
11202901 GATAAACCGAAAAATGTGTGCCCAGCACTAGTCA
1 GATAAACCGAAAAATGTGTGCCCAGCACTAGTCA
* * ** * * *
11202935 AATAAACTGATGGAA-GTTGCGCCCAGCGCTAGTCG
1 GATAAACCGA-AAAATG-TGTGCCCAGCACTAGTCA
*
11202970 GATAAACCGAAAAATGTGTGCCCGGCACTAGTCA
1 GATAAACCGAAAAATGTGTGCCCAGCACTAGTCA
* *
11203004 GATAAATCGACAAATGTGTGCCCAGCACTAGTCA
1 GATAAACCGAAAAATGTGTGCCCAGCACTAGTCA
11203038 GATAAAC
1 GATAAAC
11203045 TGACAGAAGT
Statistics
Matches: 88, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
34 62 0.70
35 26 0.30
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (34 bp):
GATAAACCGAAAAATGTGTGCCCAGCACTAGTCA
Found at i:11202960 original size:35 final size:34
Alignment explanation
Indices: 11202883--11203079 Score: 139
Period size: 34 Copynumber: 5.7 Consensus size: 34
11202873 CGGAAGAGTT
* * * * * *
11202883 TGCGCCCAACGCTTGTCGGATAAACCGAAAAATG
1 TGCGCCCAGCACTAGTCAGATAAACTGAGAAATG
* * *
11202917 TGTGCCCAGCACTAGTCAAATAAACTGATGGAA-G
1 TGCGCCCAGCACTAGTCAGATAAACTGA-GAAATG
* * * *
11202951 TTGCGCCCAGCGCTAGTCGGATAAACCGAAAAATG
1 -TGCGCCCAGCACTAGTCAGATAAACTGAGAAATG
* * *
11202986 TGTGCCCGGCACTAGTCAGATAAA-TCGACAAATG
1 TGCGCCCAGCACTAGTCAGATAAACT-GAGAAATG
* *
11203020 TGTGCCCAGCACTAGTCAGATAAACTGACAGAA-G
1 TGCGCCCAGCACTAGTCAGATAAACTGAGA-AATG
* **
11203054 TTGCGCCCAGCGCTAGTTGGATAAAC
1 -TGCGCCCAGCACTAGTCAGATAAAC
11203080 CGACGAATAA
Statistics
Matches: 129, Mismatches: 27, Indels: 13
0.76 0.16 0.08
Matches are distributed among these distances:
34 79 0.61
35 50 0.39
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (34 bp):
TGCGCCCAGCACTAGTCAGATAAACTGAGAAATG
Found at i:11205829 original size:68 final size:68
Alignment explanation
Indices: 11205749--11205900 Score: 156
Period size: 62 Copynumber: 2.3 Consensus size: 68
11205739 CAGTTATAAT
* * * *
11205749 CTAAGTAGCATCACGCAATGAACCATTAATCACAAATCTTCAAAACTCAATTTAAATGCAGTAGC
1 CTAAGTACCATCACGCAATGAACCATTAATCACAAATCTTCAAAACTCAATTCAAATACAATAGC
11205814 ATC
66 ATC
* * * *
11205817 CTAAGTACCATCAC-C-----ACCATTAATCCCAAATCTTCATAATTCAGTTCAAATACAATAGC
1 CTAAGTACCATCACGCAATGAACCATTAATCACAAATCTTCAAAACTCAATTCAAATACAATAGC
11205876 ATC
66 ATC
* *
11205879 TTAA-AATCCATCACGCAATGAA
1 CTAAGTA-CCATCACGCAATGAA
11205901 TTATTTCCAC
Statistics
Matches: 67, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
61 1 0.01
62 50 0.75
63 1 0.01
67 1 0.01
68 14 0.21
ACGTcount: A:0.41, C:0.26, G:0.08, T:0.26
Consensus pattern (68 bp):
CTAAGTACCATCACGCAATGAACCATTAATCACAAATCTTCAAAACTCAATTCAAATACAATAGC
ATC
Found at i:11208157 original size:18 final size:19
Alignment explanation
Indices: 11208112--11208157 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
11208102 TAGATTTAAT
*
11208112 TATAAATAAATATATAAAA
1 TATAAATAAATATAGAAAA
*
11208131 T-TAAAATAAA-ATAGAAGA
1 TAT-AAATAAATATAGAAAA
11208149 TATAAATAA
1 TATAAATAA
11208158 GAAATTAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
18 14 0.61
19 9 0.39
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.28
Consensus pattern (19 bp):
TATAAATAAATATAGAAAA
Found at i:11213298 original size:19 final size:20
Alignment explanation
Indices: 11213276--11213320 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
11213266 ATAACACGTC
*
11213276 TTTTAATATATA-TATATTA
1 TTTTAATACATACTATATTA
* *
11213295 TTTTACTACATACTATTTTA
1 TTTTAATACATACTATATTA
11213315 TTTTAA
1 TTTTAA
11213321 AATTGCTTTG
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 10 0.48
20 11 0.52
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.58
Consensus pattern (20 bp):
TTTTAATACATACTATATTA
Found at i:11218115 original size:6 final size:6
Alignment explanation
Indices: 11218095--11218146 Score: 52
Period size: 6 Copynumber: 8.8 Consensus size: 6
11218085 AAAAAAATGA
* * * * *
11218095 AAAAAC GAAAA- AAAAAC AAAATC AGAAGC AAAAAC AAAAAC AAAAAT
1 AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC
11218142 AAAAA
1 AAAAA
11218147 AATAATAATT
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
5 4 0.11
6 33 0.89
ACGTcount: A:0.79, C:0.12, G:0.06, T:0.04
Consensus pattern (6 bp):
AAAAAC
Found at i:11220560 original size:88 final size:86
Alignment explanation
Indices: 11220379--11220563 Score: 205
Period size: 88 Copynumber: 2.1 Consensus size: 86
11220369 AGTAAAGATA
*
11220379 ACAGATCTTGCCTTCCAGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTAAGT
1 ACAGATCTTGCCTTCCAGCACCGACAGCAAAGCAGATCGAAGACACCAGCCTT-CCTCCCTAAGT
* * *
11220444 TACAGTGGAGCAGGTTAAAAAT
65 CACAGTGGAACAAGTTAAAAAT
* *
11220466 AGCAGATCTTGCCTTCCTGCACCGACAGCAAAGCAGATCGACGAC-CCTAGTCCTAT-CTCCCT-
1 A-CAGATCTTGCCTTCCAGCACCGACAGCAAAGCAGATCGAAGACACC-AG-CCT-TCCTCCCTA
* * *
11220528 GGTCAGCAGTGGAATAAGTTAGAAATT
62 AGTCA-CAGTGGAACAAGTTA-AAAAT
11220555 ACAGATCTT
1 ACAGATCTT
11220564 TTCTCCCTAA
Statistics
Matches: 83, Mismatches: 9, Indels: 11
0.81 0.09 0.11
Matches are distributed among these distances:
87 6 0.07
88 68 0.82
89 8 0.10
90 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (86 bp):
ACAGATCTTGCCTTCCAGCACCGACAGCAAAGCAGATCGAAGACACCAGCCTTCCTCCCTAAGTC
ACAGTGGAACAAGTTAAAAAT
Found at i:11220869 original size:44 final size:42
Alignment explanation
Indices: 11220690--11221819 Score: 189
Period size: 44 Copynumber: 25.9 Consensus size: 42
11220680 AAAATTATAG
* * *
11220690 ATCTTATCTCCCTAAGTAATAGTGGAGCAGATCGAAGACGGCGA
1 ATCTTATCTCCCT-AGCAGTAGTGGAGCAGATCGAAGACGAC-A
* * * ** *
11220734 ATCTTATCTTCCCTAGAAGTAGAGAAGCAGATTTAAG-CCACA
1 ATCTTATC-TCCCTAGCAGTAGTGGAGCAGATCGAAGACGACA
* * * ** * * **
11220776 ATTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGGAA-ATTACA
1 A-TCTTATCTCCCTAG-CAGTAGTGGAGCA-GATCGAAGACGACA
*
11220820 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
1 -ATCTTATCTCCCT-AGCAGTAGTGGAGCAGATCGAAGACGAC-A
* * ** *
11220865 ATCTTATCTTCCAC-AGGAGTAG-GGAAGTAGATTTAAG-CCACA
1 ATCTTATC-TCC-CTAGCAGTAGTGG-AGCAGATCGAAGACGACA
* * * ** * * **
11220907 AGTCCTATCTCCCTAGTCAGCAGTAGAATAGGTTAGAA-ATTACA
1 A-TCTTATCTCCCTAG-CAGTAGTGGAGCA-GATCGAAGACGACA
* * * **
11220951 GATCTTATCTCCCTAAGCAGTAATGGAGCAGATCAAACACGGTGA
1 -ATCTTATCTCCCT-AGCAGTAGTGGAGCAGATCGAAGAC-GACA
* * ** *
11220996 ATCTTATCTTCTCTAGGAGTAG-GGAAGCAGATTTAAG-CCACA
1 ATCTTATC-TCCCTAGCAGTAGTGG-AGCAGATCGAAGACGACA
* ** * * **
11221038 AGTCCTATCTCCCTAGTCAGTAGTGGAATAGGTTGGAA-ATTACA
1 A-TCTTATCTCCCTAG-CAGTAGTGGAGCA-GATCGAAGACGACA
*
11221082 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGACGA
1 -ATCTTATCTCCCT-AGCAGTAGTGGAGCAGATCGAAGACGAC-A
* * * ** *
11221127 ATCTTATCTTCCCCAGGAGTAG-GGAAGCAAATTTAAG-CCACA
1 ATCTTATC-TCCCTAGCAGTAGTGG-AGCAGATCGAAGACGACA
* * * ** * * **
11221169 AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAGAA-ATTACA
1 A-TCTTATCTCCCTAG-CAGTAGTGGAGCA-GATCGAAGACGACA
* * *
11221213 GATCTTATCTCCCTAAGCAGTAGTAGAACAGATCGAAGACGGCGA
1 -ATCTTATCTCCCT-AGCAGTAGTGGAGCAGATCGAAGACGAC-A
* * ** *
11221258 ATCTTATCTTCCCCAGAAGTAG-GGAAGCAGATTTAAG-CCACTA
1 ATCTTATC-TCCCTAGCAGTAGTGG-AGCAGATCGAAGACGAC-A
* * * * ** * * * * *
11221301 GTCTTATCTCCCTGGACAGCAGGGGAATAGGTTGAGGATTGTA-G
1 ATCTTATCTCCCTAG-CAGTAGTGGAGCAGATCGAAGA-CG-ACA
* * * * * ****
11221345 ACCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTTTA
1 ATCTTATCTCCCT-AGCAGTAGTGGAGCAGATCGAAGACGACA
* *
11221388 GATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGCGA
1 -ATCTTATCTCCCT-AGCAGTAGTGGAGCAGATCGAAGACGAC-A
* * * ** *
11221433 ATCTTATCTTCTCTAGGAGTAAG-GAAGCAGATTTAAG-CCACTA
1 ATCTTATC-TCCCTAGCAGT-AGTGGAGCAGATCGAAGACGAC-A
* * * * ** * * *
11221476 GTCTTATCTCCCTAGATAGCAGGGGAATAGGTTGAAGATCGTA-G
1 ATCTTATCTCCCTAG-CAGTAGTGGAGCAGATCGAAGA-CG-ACA
* * * * * * * **
11221520 ACCTTATCTCCCTAAGCAGCAATGGAGTAGGTTGAAAATTACAA
1 ATCTTATCTCCCT-AGCAGTAGTGGAGCAGATCGAAGACGAC-A
* *
11221564 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCGA
1 ATCTTATCTCCCT-AGCAGTAGTGGAGCAGATCGAAGACGAC-A
** *
11221608 ATCTTATCTTCCCCCT-G-AGTAG-GGAAGCAGATTTAAG-CCACAA
1 ATCTTATC-T--CCCTAGCAGTAGTGG-AGCAGATCGAAGACGAC-A
* * * * * * * **
11221651 ACCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAA
1 ATCTTATCTCCCT-AGCAGTAGTGGAGCAGATCGAAGACGAC-A
* * * * *
11221695 ATCTTATATCCTTAAGCAGTAGTGGAGTAGATCGAAGATGGCA
1 ATCTTATCTCCCT-AGCAGTAGTGGAGCAGATCGAAGACGACA
* * * **
11221738 GATCTTATTTCCCTAAGCAATAGTGGAGCAGATCGAAGATGGTA
1 -ATCTTATCTCCCT-AGCAGTAGTGGAGCAGATCGAAGACGACA
* * *
11221782 GATCTTATCTCCGTAACTAGTAGTGGAGCAGATTGAAG
1 -ATCTTATCTCCCTAGC-AGTAGTGGAGCAGATCGAAG
11221820 CCAGTAATCC
Statistics
Matches: 777, Mismatches: 233, Indels: 152
0.67 0.20 0.13
Matches are distributed among these distances:
40 4 0.01
41 1 0.00
42 46 0.06
43 153 0.20
44 519 0.67
45 47 0.06
46 3 0.00
47 4 0.01
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.25
Consensus pattern (42 bp):
ATCTTATCTCCCTAGCAGTAGTGGAGCAGATCGAAGACGACA
Found at i:11221382 original size:131 final size:131
Alignment explanation
Indices: 11220514--11221371 Score: 1270
Period size: 131 Copynumber: 6.5 Consensus size: 131
11220504 CGACGACCCT
* *
11220514 AGTCCTATCTCCCTGGTCAGCAGTGGAATAAGTTAGAAATTACAGATCTTTTCTCCCTAAGCAGT
1 AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAGAAATTACAGATCTTATCTCCCTAAGCAGT
* * * *
11220579 AGTGGAGCAAATCGAAGACGGTGAGTCTTATCTTCCCCA-AGAGTAGGGAATCAGATTTAAGCCA
66 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAGA-AGTAGGGAAGCAGATTTAAGCCA
11220643 CA
130 CA
* * * * *
11220645 AGTCCTATCTCCTTGGTCAGCAGTGGAATAGGTTAAAAATTATAGATCTTATCTCCCTAAGTAAT
1 AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAGAAATTACAGATCTTATCTCCCTAAGCAGT
* *
11220710 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCTAGAAGTAGAGAAGCAGATTTAAGCCAC
66 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAGAAGTAGGGAAGCAGATTTAAGCCAC
11220775 A
131 A
* *
11220776 ATTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTATCTCCCTAAGCAGT
1 AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAGAAATTACAGATCTTATCTCCCTAAGCAGT
* * *
11220841 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCACAGGAGTAGGGAAGTAGATTTAAGCCAC
66 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAGAAGTAGGGAAGCAGATTTAAGCCAC
11220906 A
131 A
* *
11220907 AGTCCTATCTCCCTAGTCAGCAGTAGAATAGGTTAGAAATTACAGATCTTATCTCCCTAAGCAGT
1 AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAGAAATTACAGATCTTATCTCCCTAAGCAGT
* * * * * * *
11220972 AATGGAGCAGATCAAACACGGTGAATCTTATCTTCTCTAGGAGTAGGGAAGCAGATTTAAGCCAC
66 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAGAAGTAGGGAAGCAGATTTAAGCCAC
11221037 A
131 A
* * *
11221038 AGTCCTATCTCCCTAGTCAGTAGTGGAATAGGTTGGAAATTACAGATCTTATCTCCCTAAGCAGT
1 AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAGAAATTACAGATCTTATCTCCCTAAGCAGT
* * * *
11221103 AGTGGAGCAGATCAAAGACGACGAATCTTATCTTCCCCAGGAGTAGGGAAGCAAATTTAAGCCAC
66 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAGAAGTAGGGAAGCAGATTTAAGCCAC
11221168 A
131 A
11221169 AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAGAAATTACAGATCTTATCTCCCTAAGCAGT
1 AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAGAAATTACAGATCTTATCTCCCTAAGCAGT
* *
11221234 AGTAGAACAGATCGAAGACGGCGAATCTTATCTTCCCCAGAAGTAGGGAAGCAGATTTAAGCCAC
66 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAGAAGTAGGGAAGCAGATTTAAGCCAC
*
11221299 T
131 A
* * * * ** * *
11221300 AGTCTTATCTCCCTGGACAGCAGGGGAATAGGTT-GAGGATTGTAGACCTTATCTCCCTGAGCAG
1 AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAGA-AATTACAGATCTTATCTCCCTAAGCAG
*
11221364 CAGTGGAG
65 TAGTGGAG
11221372 TAGGTTGAAG
Statistics
Matches: 657, Mismatches: 68, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
130 2 0.00
131 654 1.00
132 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (131 bp):
AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAGAAATTACAGATCTTATCTCCCTAAGCAGT
AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAGAAGTAGGGAAGCAGATTTAAGCCAC
A
Found at i:11221593 original size:131 final size:130
Alignment explanation
Indices: 11221347--11221732 Score: 307
Period size: 131 Copynumber: 2.9 Consensus size: 130
11221337 GATTGTAGAC
* * ** * *
11221347 CTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTTTAGATCTTATCTCCCTAAGCAGTAGT
1 CTTATCTCCCTGA--AGCAGGGGAATAGGTTGAAGATCATAGACCTTATCTCCCTAAGCAGCAGT
* * * *** * * * * **
11221412 GGAGTAGATCGAAGACGGCGAATCTTATCTTCTCT-AGGAGTAAG-GAAGCAGATTTAAG-CCAC
64 GGAGTAGGTTGAAAATTACAAATCTTATC-TCCCTAAGCAGT-AGTGGAGCAGATCAAAGACCAC
* *
11221474 TAGT
127 GAAT
* *
11221478 CTTATCTCCCTAGATAGCAGGGGAATAGGTTGAAGATCGTAGACCTTATCTCCCTAAGCAGCAAT
1 CTTATCTCCCT-GA-AGCAGGGGAATAGGTTGAAGATCATAGACCTTATCTCCCTAAGCAGCAGT
**
11221543 GGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCGA
64 GGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACCACGA
11221608 AT
129 AT
* * * * * * * * *
11221610 CTTATCTTCCCCCTG-AGTA-GGGAAGCAGATTTAAG-CCACAAACCCTATCTCCCTGAGCAGCA
1 CTTATC-T--CCCTGAAGCAGGGGAA-TAGGTTGAAGATCATAGACCTTATCTCCCTAAGCAGCA
* * * *
11221672 GTGGAGTAGGTTGAAAATTACAAATCTTATATCCTTAAGCAGTAGTGGAGTAGATCGAAGA
62 GTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGA
11221733 TGGCAGATCT
Statistics
Matches: 208, Mismatches: 39, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
130 6 0.03
131 174 0.84
132 22 0.11
133 1 0.00
134 1 0.00
135 4 0.02
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.26
Consensus pattern (130 bp):
CTTATCTCCCTGAAGCAGGGGAATAGGTTGAAGATCATAGACCTTATCTCCCTAAGCAGCAGTGG
AGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACCACGAAT
Found at i:11221768 original size:131 final size:131
Alignment explanation
Indices: 11221524--11221770 Score: 347
Period size: 131 Copynumber: 1.9 Consensus size: 131
11221514 TCGTAGACCT
*
11221524 TATCTCCCTAAGCAGCAATGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGCAGTAGTGG
1 TATCTCCCTAAGCAGCAATGGAGTAGGTTGAAAATTACAAATCTTATATCCCTAAGCAGTAGTGG
** *
11221589 AGCAGATCAAAGACGGCGAATCTTATCTTCCCCCTGAGTAGGGAAGCAGATTTAAGCCACAAACC
66 AGCAGATCAAAGACGGCGAATCTTATCTTCCCCAAGAATAGGGAAGCAGATTTAAGCCACAAACC
11221654 C
131 C
* * *
11221655 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATATCCTTAAGCAGTAGTGG
1 TATCTCCCTAAGCAGCAATGGAGTAGGTTGAAAATTACAAATCTTATATCCCTAAGCAGTAGTGG
* * * *
11221720 AGTAGATCGAAGATGGC-AGATCTTAT-TTCCCTAAGCAATAGTGG-AGCAGAT
66 AGCAGATCAAAGACGGCGA-ATCTTATCTTCCCCAAG-AATAG-GGAAGCAGAT
11221771 CGAAGATGGT
Statistics
Matches: 102, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
130 7 0.07
131 93 0.91
132 2 0.02
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.25
Consensus pattern (131 bp):
TATCTCCCTAAGCAGCAATGGAGTAGGTTGAAAATTACAAATCTTATATCCCTAAGCAGTAGTGG
AGCAGATCAAAGACGGCGAATCTTATCTTCCCCAAGAATAGGGAAGCAGATTTAAGCCACAAACC
C
Found at i:11221791 original size:175 final size:176
Alignment explanation
Indices: 11221186--11221776 Score: 771
Period size: 175 Copynumber: 3.4 Consensus size: 176
11221176 TCTCCCTGGT
* * *
11221186 CAGCAGTGGAATAGGTTAGAA-ATTACAGATCTTATCTCCCTAAGCAGTAGTAGAACAGATCGAA
1 CAGCAGTGGAGTAGGTT-GAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAA
11221250 GACGGCGAATCTTATCTT-CCCCAGAAGTAGGGAAGCAGATTTAAGCCACTAGTCTTATCTCCCT
65 GACGGCGAATCTTATCTTCCCCCAG-AGTAGGGAAGCAGATTTAAGCCACTAGTCTTATCTCCCT
* *
11221314 G-GACAGCAGGGGAATAGGTTGAGGATTGTAGACCTTATCTCCCTGAG
129 GAGACAGCAGGGGAATAGGTTGAAGATTGTAGACCTTATCTCCCTAAG
** *
11221361 CAGCAGTGGAGTAGGTTGAAGATTTTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAG
1 CAGCAGTGGAGTAGGTTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAG
* * *
11221426 ACGGCGAATCTTATCTT-CTCTAGGAGTAAGGAAGCAGATTTAAGCCACTAGTCTTATCTCCCT-
66 ACGGCGAATCTTATCTTCCCCCA-GAGTAGGGAAGCAGATTTAAGCCACTAGTCTTATCTCCCTG
* *
11221489 AGATAGCAGGGGAATAGGTTGAAGATCGTAGACCTTATCTCCCTAAG
130 AGACAGCAGGGGAATAGGTTGAAGATTGTAGACCTTATCTCCCTAAG
* * * *
11221536 CAGCAATGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAG
1 CAGCAGTGGAGTAGGTTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAG
* * ** *
11221601 ACGGCGAATCTTATCTTCCCCCTGAGTAGGGAAGCAGATTTAAGCCACAAACCCTATCTCCCTGA
66 ACGGCGAATCTTATCTTCCCCCAGAGTAGGGAAGCAGATTTAAGCCACTAGTCTTATCTCCCTGA
* * * ** * * * *
11221666 G-CAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATATCCTTAAG
131 GACAGCAGGGGAATAGGTTGAAGATTGTAGACCTTATCTCCCTAAG
* * * ** * *
11221711 CAGTAGTGGAGTAGATCGAAGATGGCAGATCTTATTTCCCTAAGCAATAGTGGAGCAGATCGAAG
1 CAGCAGTGGAGTAGGTTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAG
11221776 A
66 A
11221777 TGGTAGATCT
Statistics
Matches: 361, Mismatches: 50, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
174 3 0.01
175 353 0.98
176 5 0.01
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.25
Consensus pattern (176 bp):
CAGCAGTGGAGTAGGTTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAG
ACGGCGAATCTTATCTTCCCCCAGAGTAGGGAAGCAGATTTAAGCCACTAGTCTTATCTCCCTGA
GACAGCAGGGGAATAGGTTGAAGATTGTAGACCTTATCTCCCTAAG
Found at i:11222234 original size:44 final size:43
Alignment explanation
Indices: 11222031--11222234 Score: 180
Period size: 44 Copynumber: 4.7 Consensus size: 43
11222021 TTGAAAATTA
* * *
11222031 CAGATCTTATCTCCCTGAAGTTGCAGTGGAACGGATTAAAATC
1 CAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAATC
* * * * ***
11222074 ACAGATCTTATCTCTCTAAAGTTGCAGTAGAGTAGA-TCGCATC
1 -CAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAATC
* * * * *
11222117 CAG-CCTTATCTCTCTGAAGTTGCAGTGGAGAAGACAAAAGAACC
1 CAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC-TAA-AATC
* *
11222161 CA-ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGACTAAAATC
1 CAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAATC
* *
11222203 GTAGATCTTATCTCCCTGAGGTTGCAGTGGAG
1 -CAGATCTTATCTCCCTGAAGTTGCAGTGGAG
11222235 TAGATTGAAG
Statistics
Matches: 126, Mismatches: 28, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
41 27 0.21
42 6 0.05
43 7 0.06
44 86 0.68
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (43 bp):
CAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAATC
Found at i:11222299 original size:36 final size:38
Alignment explanation
Indices: 11222250--11222356 Score: 92
Period size: 36 Copynumber: 2.8 Consensus size: 38
11222240 TGAAGCCATT
* *
11222250 AATCCTATTTCCCTGAGGTTGCAGCGGAGCGGAT-T-A
1 AATCTTATCTCCCTGAGGTTGCAGCGGAGCGGATCTCA
* * ** *
11222286 AATCTTATCTCCCTAAAGTTGCAGTAGAGTGGATCGCGTCA
1 AATCTTATCTCCCTGAGGTTGCAGCGGAGCGGAT--C-TCA
**
11222327 GGTCTTATCTCCCTGAGGTTGCAGCGGAGC
1 AATCTTATCTCCCTGAGGTTGCAGCGGAGC
11222357 AGACTGAGAA
Statistics
Matches: 52, Mismatches: 14, Indels: 5
0.73 0.20 0.07
Matches are distributed among these distances:
36 27 0.52
40 1 0.02
41 24 0.46
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.28
Consensus pattern (38 bp):
AATCTTATCTCCCTGAGGTTGCAGCGGAGCGGATCTCA
Found at i:11222556 original size:50 final size:50
Alignment explanation
Indices: 11222411--11222578 Score: 151
Period size: 50 Copynumber: 3.3 Consensus size: 50
11222401 GACTAAGAAT
* * * * ** *
11222411 AGCGAATTTTACTTACCTAGCAGTGTAGTGGAGCAGATTGAAGCTACAAC
1 AGCGAATCTTACTTCCCAAGCAGTGCAGTGGAAAAGATTGAAGCCACAAC
* * * * **
11222461 AGTGAATC-TAGCTTTCCCGA-CATTGCAATTAAAAATGATTGAAGCCACAAC
1 AGCGAATCTTA-C-TTCCCAAGCAGTGCAGTGGAAAA-GATTGAAGCCACAAC
*
11222512 AGCGAATCTTACTTCCCAAGCAGTGCAGTGGAATAGATTGAAGCCACAAC
1 AGCGAATCTTACTTCCCAAGCAGTGCAGTGGAAAAGATTGAAGCCACAAC
* *
11222562 CGCGAATCTTGCTTCCC
1 AGCGAATCTTACTTCCC
11222579 TGACATCACA
Statistics
Matches: 92, Mismatches: 21, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
49 2 0.02
50 51 0.55
51 37 0.40
52 2 0.02
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.24
Consensus pattern (50 bp):
AGCGAATCTTACTTCCCAAGCAGTGCAGTGGAAAAGATTGAAGCCACAAC
Found at i:11228416 original size:49 final size:49
Alignment explanation
Indices: 11228321--11228874 Score: 385
Period size: 49 Copynumber: 11.3 Consensus size: 49
11228311 TACTATCTTC
** ** * * *
11228321 AATCTGTTTAACTGCAATGTCGGGGAAACAAGATTCGCCGTCGTAGCTTT
1 AATCTGTTCCACTGCAATG-CCAGGAAATAAGATTCGCTGTTGTAGCTTT
* * * *
11228371 AATCTGTTCCACTCCATTGCCAAGAAATAATATTCGCTGTTGTAGCTTT
1 AATCTGTTCCACTGCAATGCCAGGAAATAAGATTCGCTGTTGTAGCTTT
* * ** ** ** * *
11228420 AATATTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTT
1 AATCTGTTCCACTGCAATG-CCAGGAAATAAGATTCGCTGTTGTAGCTTT
*
11228470 AATCTGTTCCACTGCACTGCCAGGAAATAAGATTCGCTGTTGTAGCTTT
1 AATCTGTTCCACTGCAATGCCAGGAAATAAGATTCGCTGTTGTAGCTTT
* * ** **
11228519 AATCT-TT-AACTGTAATGTCGGGGAAGCAAGATTCG-TCGTTGT-GACTTT
1 AATCTGTTCCACTGCAATG-CCAGGAAATAAGATTCGCT-GTTGTAG-CTTT
* *
11228567 AATCTGTTCCACTGCACTGCCAGGAAATAAGATTCGCTGTTGTGGCTTT
1 AATCTGTTCCACTGCAATGCCAGGAAATAAGATTCGCTGTTGTAGCTTT
* * ** * *
11228616 AATCT-TT-AACTGCAATGTCGAGGAAGCAAGATTCGCCGTTGTGGCTTT
1 AATCTGTTCCACTGCAATG-CCAGGAAATAAGATTCGCTGTTGTAGCTTT
** * * *
11228664 AAT-TAGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTT
1 AATCT-GTTCCACTGCAATGCCA-GGAAATAAGATTCGCTGTTGTAGCTTT
* ** ** ** *
11228714 AATCT-TT-AACTGCAATGTCGGGGAAGCAAGATTCGCCATTGTGGCTTT
1 AATCTGTTCCACTGCAATG-CCAGGAAATAAGATTCGCTGTTGTAGCTTT
* * *
11228762 AATCTGTTCCACTGCACTTCCAGGAAATAAGATTCGCTGTTTTAGCTTT
1 AATCTGTTCCACTGCAATGCCAGGAAATAAGATTCGCTGTTGTAGCTTT
* * ** * *
11228811 AATCT-TT-AACTGCAATGTCGAGGAAGCAAGATTCG-TCATTGTGGCTTT
1 AATCTGTTCCACTGCAATG-CCAGGAAATAAGATTCGCT-GTTGTAGCTTT
* *
11228859 AATTTATTCCACTGCA
1 AATCTGTTCCACTGCA
11228875 CTGTCTGAGA
Statistics
Matches: 393, Mismatches: 90, Indels: 42
0.75 0.17 0.08
Matches are distributed among these distances:
47 26 0.07
48 125 0.32
49 132 0.34
50 109 0.28
51 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (49 bp):
AATCTGTTCCACTGCAATGCCAGGAAATAAGATTCGCTGTTGTAGCTTT
Found at i:11228576 original size:97 final size:97
Alignment explanation
Indices: 11228327--11228895 Score: 834
Period size: 97 Copynumber: 5.8 Consensus size: 97
11228317 CTTCAATCTG
* * * * *
11228327 TTTAACTGCAATGTCGGGGAAACAAGATTCGCCGTCGTAGCTTTAATCTGTTCCACTCCATTGCC
1 TTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACTGCC
* * *
11228392 AAGAAATAATATTCGCTGTTGTAGCTTTAATATT
66 AGGAAATAAGATTCGCTGTTGTAGCTTT-A-ATC
11228426 TTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACTGCC
1 TTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACTGCC
11228491 AGGAAATAAGATTCGCTGTTGTAGCTTTAATC
66 AGGAAATAAGATTCGCTGTTGTAGCTTTAATC
* * *
11228523 TTTAACTGTAATGTCGGGGAAGCAAGATTCGTCGTTGTGACTTTAATCTGTTCCACTGCACTGCC
1 TTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACTGCC
*
11228588 AGGAAATAAGATTCGCTGTTGTGGCTTTAATC
66 AGGAAATAAGATTCGCTGTTGTAGCTTTAATC
* *
11228620 TTTAACTGCAATGTCGAGGAAGCAAGATTCGCCGTTGTGGCTTTAAT-TAGTTCCACTGCACCGC
1 TTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCT-GTTCCACTGCACTGC
* * *
11228684 CAGGGAAGTAAGATTCGCCGTTGTGGCTTTAATC
65 CA-GGAAATAAGATTCGCTGTTGTAGCTTTAATC
* *
11228718 TTTAACTGCAATGTCGGGGAAGCAAGATTCGCCATTGTGGCTTTAATCTGTTCCACTGCACTTCC
1 TTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACTGCC
*
11228783 AGGAAATAAGATTCGCTGTTTTAGCTTTAATC
66 AGGAAATAAGATTCGCTGTTGTAGCTTTAATC
* * * * * *
11228815 TTTAACTGCAATGTCGAGGAAGCAAGATTCGTCATTGTGGCTTTAATTTATTCCACTGCACTGTC
1 TTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACTGCC
* *
11228880 TGAGAAGTAAGATTCG
66 AG-GAAATAAGATTCG
11228896 TAATTTTTAA
Statistics
Matches: 431, Mismatches: 35, Indels: 9
0.91 0.07 0.02
Matches are distributed among these distances:
96 1 0.00
97 241 0.56
98 102 0.24
99 87 0.20
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (97 bp):
TTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACTGCC
AGGAAATAAGATTCGCTGTTGTAGCTTTAATC
Found at i:11228766 original size:195 final size:195
Alignment explanation
Indices: 11228327--11228895 Score: 856
Period size: 195 Copynumber: 2.9 Consensus size: 195
11228317 CTTCAATCTG
* * * * *
11228327 TTTAACTGCAATGTCGGGGAAACAAGATTCGCCGTCGTAGCTTTAATCTGTTCCACTCCATTGCC
1 TTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACTGCC
* * * *
11228392 AAGAAATAATATTCGCTGTTGTAGCTTTAATATTTTTAACTGCAATGTCGGGGAAGCAAGATTCG
66 AGGAAATAAGATTCGCTGTTGTAGCTTT-A-ATCTTTAACTGCAATGTCGAGGAAGCAAGATTCG
* *
11228457 CCGTTGTGGCTTTAATCT-GTTCCACTGCACTGCCA-GGAAATAAGATTCGCTGTTGTAGCTTTA
129 CCGTTGTGGCTTTAAT-TAGTTCCACTGCACTGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTTA
11228520 ATC
193 ATC
* * *
11228523 TTTAACTGTAATGTCGGGGAAGCAAGATTCGTCGTTGTGACTTTAATCTGTTCCACTGCACTGCC
1 TTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACTGCC
*
11228588 AGGAAATAAGATTCGCTGTTGTGGCTTTAATCTTTAACTGCAATGTCGAGGAAGCAAGATTCGCC
66 AGGAAATAAGATTCGCTGTTGTAGCTTTAATCTTTAACTGCAATGTCGAGGAAGCAAGATTCGCC
* *
11228653 GTTGTGGCTTTAATTAGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTTAATC
131 GTTGTGGCTTTAATTAGTTCCACTGCACTGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTTAATC
* *
11228718 TTTAACTGCAATGTCGGGGAAGCAAGATTCGCCATTGTGGCTTTAATCTGTTCCACTGCACTTCC
1 TTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACTGCC
* *
11228783 AGGAAATAAGATTCGCTGTTTTAGCTTTAATCTTTAACTGCAATGTCGAGGAAGCAAGATTCGTC
66 AGGAAATAAGATTCGCTGTTGTAGCTTTAATCTTTAACTGCAATGTCGAGGAAGCAAGATTCGCC
* * * *
11228848 ATTGTGGCTTTAATTTA-TTCCACTGCACTGTCTGAGAAGTAAGATTCG
131 GTTGTGGCTTTAA-TTAGTTCCACTGCACTGCCAGGGAAGTAAGATTCG
11228896 TAATTTTTAA
Statistics
Matches: 340, Mismatches: 30, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
193 1 0.00
194 64 0.19
195 190 0.56
196 85 0.25
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (195 bp):
TTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACTGCC
AGGAAATAAGATTCGCTGTTGTAGCTTTAATCTTTAACTGCAATGTCGAGGAAGCAAGATTCGCC
GTTGTGGCTTTAATTAGTTCCACTGCACTGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTTAATC
Found at i:11228861 original size:292 final size:294
Alignment explanation
Indices: 11228327--11228895 Score: 867
Period size: 292 Copynumber: 1.9 Consensus size: 294
11228317 CTTCAATCTG
* **
11228327 TTTAACTGCAATGTCGGGGAAACAAGATTCGCCGTCGTAGCTTTAATCTGTTCCACTCCATTGCC
1 TTTAACTGCAATGTCGAGGAAACAAGATTCGCCGTCGTAGCTTTAATCTGTTCCACTCCACCGCC
* * *
11228392 AAGAAATAATATTCGCTGTTGTAGCTTTAATATTTTTAACTGCAATGTCGGGGAAGCAAGATTCG
66 AAGAAATAAGATTCGCCGTTGTAGCTTTAATATCTTTAACTGCAATGTCGGGGAAGCAAGATTCG
*
11228457 CCGTTGTGGCTTTAATCTGTTCCACTGCACTGCCAGGAAATAAGATTCGCTGTTGTAGCTTTAAT
131 CCATTGTGGCTTTAATCTGTTCCACTGCACTGCCAGGAAATAAGATTCGCTGTTGTAGCTTTAAT
* * * *
11228522 CTTTAACTGTAATGTCGGGGAAGCAAGATTCGTCGTTGTGACTTTAATCTGTTCCACTGCACTGC
196 CTTTAACTGCAATGTCGAGGAAGCAAGATTCGTCATTGTGACTTTAATCTATTCCACTGCACTGC
11228587 CAG-GAAATAAGATTCGCTGTTGTGGCTTTAATC
261 CAGAGAAATAAGATTCGCTGTTGTGGCTTTAATC
* * * *
11228620 TTTAACTGCAATGTCGAGGAAGCAAGATTCGCCGTTGTGGCTTTAAT-TAGTTCCACTGCACCGC
1 TTTAACTGCAATGTCGAGGAAACAAGATTCGCCGTCGTAGCTTTAATCT-GTTCCACTCCACCGC
* * *
11228684 CAGGGAAGTAAGATTCGCCGTTGTGGCTTT-A-ATCTTTAACTGCAATGTCGGGGAAGCAAGATT
65 CA-AGAAATAAGATTCGCCGTTGTAGCTTTAATATCTTTAACTGCAATGTCGGGGAAGCAAGATT
* *
11228747 CGCCATTGTGGCTTTAATCTGTTCCACTGCACTTCCAGGAAATAAGATTCGCTGTTTTAGCTTTA
129 CGCCATTGTGGCTTTAATCTGTTCCACTGCACTGCCAGGAAATAAGATTCGCTGTTGTAGCTTTA
* *
11228812 ATCTTTAACTGCAATGTCGAGGAAGCAAGATTCGTCATTGTGGCTTTAATTTATTCCACTGCACT
194 ATCTTTAACTGCAATGTCGAGGAAGCAAGATTCGTCATTGTGACTTTAATCTATTCCACTGCACT
* * *
11228877 GTCTGAGAAGTAAGATTCG
259 GCCAGAGAAATAAGATTCG
11228896 TAATTTTTAA
Statistics
Matches: 248, Mismatches: 25, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
292 156 0.63
293 70 0.28
294 22 0.09
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (294 bp):
TTTAACTGCAATGTCGAGGAAACAAGATTCGCCGTCGTAGCTTTAATCTGTTCCACTCCACCGCC
AAGAAATAAGATTCGCCGTTGTAGCTTTAATATCTTTAACTGCAATGTCGGGGAAGCAAGATTCG
CCATTGTGGCTTTAATCTGTTCCACTGCACTGCCAGGAAATAAGATTCGCTGTTGTAGCTTTAAT
CTTTAACTGCAATGTCGAGGAAGCAAGATTCGTCATTGTGACTTTAATCTATTCCACTGCACTGC
CAGAGAAATAAGATTCGCTGTTGTGGCTTTAATC
Found at i:11229067 original size:90 final size:88
Alignment explanation
Indices: 11228883--11229108 Score: 264
Period size: 90 Copynumber: 2.6 Consensus size: 88
11228873 CACTGTCTGA
* * * **
11228883 GAAG-TAAGAT-TCGTAATTTTTAACCTACTCCA-AGACTGCTTAAGGAGACAAGGCTGAGCGTT
1 GAAGATAAGATCT-GTAATTTTTAACCTACTCCACTG-CTGCTCAGGGAGACAAGGCTGAGCGAC
*
11228945 TTTGATCTGCTCCACTACTGCTTAG
64 TTCGATCTGCTCCACTACTGCTTAG
*
11228970 GAAGATAAGATCTGTAATTTTTTTTAACCTACTCCACTGCTGCTCAGGGAGACAAGGCTG-GGGA
1 GAAGATAAGATCTGTAA---TTTTTAACCTACTCCACTGCTGCTCAGGGAGACAAGGCTGAGCGA
11229034 CTTCGATCTGCTCCACTACTGCTTAG
63 CTTCGATCTGCTCCACTACTGCTTAG
* * * *
11229060 GGAGATAAGATTTGTAATCTTTAACCTATTCCACTGCTGAC-CAGGGAGA
1 GAAGATAAGATCTGTAATTTTTAACCTACTCCACTGCTG-CTCAGGGAGA
11229109 TAGGATTAGT
Statistics
Matches: 121, Mismatches: 11, Indels: 14
0.83 0.08 0.10
Matches are distributed among these distances:
87 32 0.26
88 11 0.09
89 1 0.01
90 41 0.34
91 35 0.29
92 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (88 bp):
GAAGATAAGATCTGTAATTTTTAACCTACTCCACTGCTGCTCAGGGAGACAAGGCTGAGCGACTT
CGATCTGCTCCACTACTGCTTAG
Found at i:11229330 original size:131 final size:131
Alignment explanation
Indices: 11229034--11229638 Score: 910
Period size: 131 Copynumber: 4.6 Consensus size: 131
11229024 AGGCTGGGGA
*
11229034 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATCTT-TAACCTATTCCACTGCT
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-TTCTAACCTATTCCACTGCT
* *
11229098 GACCAGGGAGATAGGA-TTAGTGGCTTAAATCTGC-TCCCTACTCTTGGGGAAGATACGATTCGC
65 GACCAGGGAGATAGGACTT-GTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGC
11229161 CGT
129 CGT
* * * *
11229164 CTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTATAATTTCCAACCTATTCCACTGCTG
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCTAACCTATTCCACTGCTG
* *
11229229 AGCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTGGGAAAGATAAGATTCGCCG
66 ACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCCG
11229294 T
131 T
* * * *
11229295 CTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGAAATTTCTAACCTATTCTACTGTTG
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCTAACCTATTCCACTGCTG
* * * ** *
11229360 ACCAGGGAGATAGGACTTGTGACTTAAATCTGTTTCTCTACTCCCAGGGAAGATAAGATTCGTCG
66 ACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCCG
11229425 T
131 T
* *
11229426 CTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCTAACCTATTCCACTGTTG
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCTAACCTATTCCACTGCTG
* * *
11229491 ACCACGGAGATAGGACTTGTGGCTTAAATCTGATTCCCTACTTCTGGGGAAGATAAGATTCGCCG
66 ACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCCG
11229556 T
131 T
* * * * *
11229557 CTTTGATTTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAACCCATTCCAGTGCTG
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCTAACCTATTCCACTGCTG
11229622 ACCAGGGAGATAGGACT
66 ACCAGGGAGATAGGACT
11229639 AGGGTCGTCG
Statistics
Matches: 427, Mismatches: 45, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
129 2 0.00
130 86 0.20
131 339 0.79
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (131 bp):
CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCTAACCTATTCCACTGCTG
ACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCCG
T
Found at i:11231683 original size:14 final size:14
Alignment explanation
Indices: 11231666--11231736 Score: 54
Period size: 14 Copynumber: 4.8 Consensus size: 14
11231656 TCATTTCATC
11231666 ATTTTTTTATTTTG
1 ATTTTTTTATTTTG
*
11231680 ATTTCAATCATTT-TTTTT
1 ATTT---T--TTTATTTTG
* *
11231698 ATTTTTTGATTTCG
1 ATTTTTTTATTTTG
*
11231712 ATTTTTTGATTTTG
1 ATTTTTTTATTTTG
11231726 ATTTTTTTATT
1 ATTTTTTTATT
11231737 AAATCTGAAC
Statistics
Matches: 45, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
13 2 0.04
14 30 0.67
15 1 0.02
17 1 0.02
18 8 0.18
19 3 0.07
ACGTcount: A:0.17, C:0.04, G:0.07, T:0.72
Consensus pattern (14 bp):
ATTTTTTTATTTTG
Found at i:11231695 original size:22 final size:22
Alignment explanation
Indices: 11231653--11231729 Score: 77
Period size: 22 Copynumber: 3.4 Consensus size: 22
11231643 TTCTTTTGCT
*
11231653 TTTTCATTTCATCATTTTTTTA
1 TTTTGATTTCATCATTTTTTTA
11231675 TTTTGATTTCAATCATTTTTTTTA
1 TTTTGATTTC-ATCA-TTTTTTTA
* *
11231699 TTTTTTGATTTC--GATTTTTTGA
1 --TTTTGATTTCATCATTTTTTTA
11231721 TTTTGATTT
1 TTTTGATTT
11231730 TTTTATTAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
20 9 0.19
22 16 0.33
23 5 0.10
24 8 0.17
26 10 0.21
ACGTcount: A:0.17, C:0.08, G:0.06, T:0.69
Consensus pattern (22 bp):
TTTTGATTTCATCATTTTTTTA
Found at i:11231704 original size:26 final size:23
Alignment explanation
Indices: 11231652--11231710 Score: 75
Period size: 26 Copynumber: 2.5 Consensus size: 23
11231642 TTTCTTTTGC
*
11231652 TTTTTCATTTCATCATTTTTTTA
1 TTTTTGATTTCATCATTTTTTTA
11231675 -TTTTGATTTCAATCATTTTTTTTA
1 TTTTTGATTTC-ATCA-TTTTTTTA
11231699 TTTTTTGATTTC
1 -TTTTTGATTTC
11231711 GATTTTTTGA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
22 9 0.29
23 4 0.13
24 8 0.26
26 10 0.32
ACGTcount: A:0.17, C:0.10, G:0.03, T:0.69
Consensus pattern (23 bp):
TTTTTGATTTCATCATTTTTTTA
Found at i:11232649 original size:25 final size:25
Alignment explanation
Indices: 11232599--11232664 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
11232589 AAGAAAATCC
* *
11232599 AAAAGAATGAAAGAATAATTATTCA
1 AAAAGAATAAAAGAATAATTACTCA
*
11232624 AAAAGAATAAAAGAAT-ATTGGCTCA
1 AAAAGAATAAAAGAATAATT-ACTCA
11232649 AAAATGAATGAAAAGA
1 AAAA-GAAT-AAAAGA
11232665 TGTATTTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
24 3 0.09
25 22 0.63
26 4 0.11
27 6 0.17
ACGTcount: A:0.61, C:0.05, G:0.15, T:0.20
Consensus pattern (25 bp):
AAAAGAATAAAAGAATAATTACTCA
Found at i:11237586 original size:28 final size:28
Alignment explanation
Indices: 11237554--11237610 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
11237544 GCAAAAACAC
11237554 ACTTGGAGATATGCATGACTTCCTAAGG
1 ACTTGGAGATATGCATGACTTCCTAAGG
*
11237582 ACTTGGAGATGTGCATGACTTCCTAAGG
1 ACTTGGAGATATGCATGACTTCCTAAGG
11237610 A
1 A
11237611 TTTACACATT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (28 bp):
ACTTGGAGATATGCATGACTTCCTAAGG
Found at i:11240367 original size:9 final size:9
Alignment explanation
Indices: 11240353--11240378 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
11240343 AATTAAATCG
11240353 AATTATTCA
1 AATTATTCA
11240362 AATTATTCA
1 AATTATTCA
11240371 AATTATTC
1 AATTATTC
11240379 GAATCAGCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.46
Consensus pattern (9 bp):
AATTATTCA
Found at i:11240575 original size:20 final size:20
Alignment explanation
Indices: 11240531--11240581 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
11240521 ACAAAAAATA
* *
11240531 CAAAAAATTAAATTAATTTT
1 CAAAAATTTAAATTAAATTT
11240551 CAAAAATTTAAATTTAAATTT
1 CAAAAATTTAAA-TTAAATTT
11240572 --AAAATTTAAA
1 CAAAAATTTAAA
11240582 ATATTTATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 10 0.36
20 11 0.39
21 7 0.25
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (20 bp):
CAAAAATTTAAATTAAATTT
Found at i:11256150 original size:35 final size:35
Alignment explanation
Indices: 11256110--11256182 Score: 110
Period size: 35 Copynumber: 2.1 Consensus size: 35
11256100 TGCCCTAAAT
11256110 GACTTATATACCATTTACACGATGTTACCCTGAAG
1 GACTTATATACCATTTACACGATGTTACCCTGAAG
* * * *
11256145 GACTTATATATCATTTACACGGTGTTGCCTTGAAG
1 GACTTATATACCATTTACACGATGTTACCCTGAAG
11256180 GAC
1 GAC
11256183 CAGTAGATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.33
Consensus pattern (35 bp):
GACTTATATACCATTTACACGATGTTACCCTGAAG
Found at i:11257920 original size:56 final size:58
Alignment explanation
Indices: 11257858--11257979 Score: 212
Period size: 56 Copynumber: 2.1 Consensus size: 58
11257848 ATTTTCAGGT
11257858 TATTTTCATTTTCAATTTGGAGAAAACCACATTCATTTCCAAA-ATTT-TCATTTCTC
1 TATTTTCATTTTCAATTTGGAGAAAACCACATTCATTTCCAAATATTTCTCATTTCTC
* *
11257914 TATTTTCATTTTCATTTTGGAGAAAACCACATTTATTTCCAAATATTTCTCATTTCTC
1 TATTTTCATTTTCAATTTGGAGAAAACCACATTCATTTCCAAATATTTCTCATTTCTC
11257972 TATTTTCA
1 TATTTTCA
11257980 CCATTTTTAT
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
56 41 0.66
57 4 0.06
58 17 0.27
ACGTcount: A:0.29, C:0.19, G:0.05, T:0.48
Consensus pattern (58 bp):
TATTTTCATTTTCAATTTGGAGAAAACCACATTCATTTCCAAATATTTCTCATTTCTC
Found at i:11266949 original size:22 final size:24
Alignment explanation
Indices: 11266911--11266954 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
11266901 TGATAATATG
11266911 TTTTGATATAAAAAATTAAAGTGT
1 TTTTGATATAAAAAATTAAAGTGT
11266935 TTTTGA-AT-AAAAATTAAAGT
1 TTTTGATATAAAAAATTAAAGT
11266955 TGAACAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 12 0.60
23 2 0.10
24 6 0.30
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (24 bp):
TTTTGATATAAAAAATTAAAGTGT
Found at i:11267092 original size:20 final size:20
Alignment explanation
Indices: 11267054--11267092 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
11267044 TTAACATTAA
* **
11267054 AATCAAGTTAAAATGATTTT
1 AATCAAGTAAAAACAATTTT
11267074 AATCAAGTAAAAACAATTT
1 AATCAAGTAAAAACAATTT
11267093 AAACTAGTCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.51, C:0.08, G:0.08, T:0.33
Consensus pattern (20 bp):
AATCAAGTAAAAACAATTTT
Found at i:11272066 original size:46 final size:45
Alignment explanation
Indices: 11271987--11272124 Score: 177
Period size: 46 Copynumber: 3.0 Consensus size: 45
11271977 ACAATGCAAT
* * * * *
11271987 AACTCAGTATAGTTTTCTTCACTAAAATGCCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTT-ACTGAAATACCATACCTACGTTCCAC
*
11272033 AACTCAATATGGTTTTCGTTACTGAAATACCATACCTACGTTCCAC
1 AACTCAGTATGGTTTTC-TTACTGAAATACCATACCTACGTTCCAC
* *
11272079 AACTCAGTATGGTTTTCTTTACTGAATTACCATACCTACATTCCAC
1 AACTCAGTATGGTTTTC-TTACTGAAATACCATACCTACGTTCCAC
11272125 CCTTTACCAT
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
46 79 0.98
47 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.36
Consensus pattern (45 bp):
AACTCAGTATGGTTTTCTTACTGAAATACCATACCTACGTTCCAC
Found at i:11279353 original size:46 final size:45
Alignment explanation
Indices: 11279279--11279417 Score: 188
Period size: 46 Copynumber: 3.0 Consensus size: 45
11279269 ACAATGCTAT
* * * *
11279279 AACTCAGTATGATTTTCTTCACTAAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTT-ACTGAAATACCATACCTACGTTCCAC
*
11279325 AACTCAGTATGGTTTTCGTTACTGAAATACCATACCTGCGTTCCAC
1 AACTCAGTATGGTTTTC-TTACTGAAATACCATACCTACGTTCCAC
* *
11279371 AACTCAGTATGGTTTTCTTTACTGAATTACCATACCTACATTCCAC
1 AACTCAGTATGGTTTTC-TTACTGAAATACCATACCTACGTTCCAC
11279417 A
1 A
11279418 CTTTTCCATG
Statistics
Matches: 83, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
46 81 0.98
47 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.09, T:0.35
Consensus pattern (45 bp):
AACTCAGTATGGTTTTCTTACTGAAATACCATACCTACGTTCCAC
Found at i:11285050 original size:35 final size:36
Alignment explanation
Indices: 11284982--11285115 Score: 146
Period size: 35 Copynumber: 3.8 Consensus size: 36
11284972 GGTTAGACTA
* * *
11284982 GCTCTTATGAGCAT-TGGTGTGTTTTGAAAGGATTT
1 GCTCTTATGAGCATCTGGTGTGTTTTGGAGGGATTG
* *
11285017 GATCTTATGAGCAT-TGGTTTGTTTTGGAGGGATTG
1 GCTCTTATGAGCATCTGGTGTGTTTTGGAGGGATTG
* * * * *
11285052 GCTCGTGTGAGCATCTGGTCTGTCTTAGAGGGATTG
1 GCTCTTATGAGCATCTGGTGTGTTTTGGAGGGATTG
* *
11285088 GCTCTTGTGAGCATCTAGTGTGTTTTGG
1 GCTCTTATGAGCATCTGGTGTGTTTTGG
11285116 TTGGACTGAT
Statistics
Matches: 82, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
35 41 0.50
36 41 0.50
ACGTcount: A:0.16, C:0.11, G:0.33, T:0.40
Consensus pattern (36 bp):
GCTCTTATGAGCATCTGGTGTGTTTTGGAGGGATTG
Found at i:11285085 original size:36 final size:36
Alignment explanation
Indices: 11285024--11285103 Score: 117
Period size: 36 Copynumber: 2.2 Consensus size: 36
11285014 TTTGATCTTA
* * *
11285024 TGAGCAT-TGGTTTGTTTTGGAGGGATTGGCTCGTG
1 TGAGCATCTGGTCTGTCTTAGAGGGATTGGCTCGTG
*
11285059 TGAGCATCTGGTCTGTCTTAGAGGGATTGGCTCTTG
1 TGAGCATCTGGTCTGTCTTAGAGGGATTGGCTCGTG
11285095 TGAGCATCT
1 TGAGCATCT
11285104 AGTGTGTTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
35 7 0.17
36 33 0.82
ACGTcount: A:0.14, C:0.14, G:0.35, T:0.38
Consensus pattern (36 bp):
TGAGCATCTGGTCTGTCTTAGAGGGATTGGCTCGTG
Found at i:11287308 original size:20 final size:23
Alignment explanation
Indices: 11287264--11287308 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 23
11287254 TGATAATAGG
11287264 TTTTGATATAACAAATTAAAATGT
1 TTTTGATATAACAAATT-AAATGT
11287288 TTTTGA-ATAA-AAATT-AATGT
1 TTTTGATATAACAAATTAAATGT
11287308 T
1 T
11287309 GAACAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 6 0.29
22 5 0.24
23 4 0.19
24 6 0.29
ACGTcount: A:0.44, C:0.02, G:0.09, T:0.44
Consensus pattern (23 bp):
TTTTGATATAACAAATTAAATGT
Done.