Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62964862
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 132689 characters in sequence are not A, C, G, or T
File 49 of 207
Found at i:14354761 original size:20 final size:19
Alignment explanation
Indices: 14354720--14354763 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
14354710 AATTTTAATT
*
14354720 AATATAAATAAACAAATTA
1 AATATAAATAAACAAATAA
* *
14354739 AATAGTAAATAGACAGATAA
1 AATA-TAAATAAACAAATAA
14354759 AATAT
1 AATAT
14354764 TTTTGCGGCG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.64, C:0.05, G:0.07, T:0.25
Consensus pattern (19 bp):
AATATAAATAAACAAATAA
Found at i:14354827 original size:41 final size:41
Alignment explanation
Indices: 14354768--14354922 Score: 210
Period size: 41 Copynumber: 3.9 Consensus size: 41
14354758 AAATATTTTT
14354768 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCACCGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCACCGAGCATTA
*
14354809 GCGGCGCTTTTTCGAAAACGCCGCTAAAG-ACCAGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCACC-GAGCATTA
** *
14354850 GCGTTGCTTTTTCAAAAACGCCGCTAAAGCCCCGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCACCGAGCATTA
** *
14354891 ---GCGCTTTTTCAAAAACATCGCTAAAGCCCCGA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCACCGA
14354923 AAGGTCAGAA
Statistics
Matches: 103, Mismatches: 9, Indels: 7
0.87 0.08 0.06
Matches are distributed among these distances:
38 28 0.27
40 3 0.03
41 70 0.68
42 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (41 bp):
GCGGCGCTTTTTCAAAAACGCCGCTAAAGCACCGAGCATTA
Found at i:14355027 original size:39 final size:40
Alignment explanation
Indices: 14354952--14355043 Score: 114
Period size: 40 Copynumber: 2.3 Consensus size: 40
14354942 GTTAGGCTTA
* * * *
14354952 CATTTTTTGCGGCGTTTTTCTAGAAAACGCCTCTAATGCT
1 CATTTTTAGCGGCGCTTTCCTAGAAAACGCCGCTAATGCT
* *
14354992 CATTTTTAGCGGCGCTTTCCT-TAAAGCGCCGCTAATGCT
1 CATTTTTAGCGGCGCTTTCCTAGAAAACGCCGCTAATGCT
14355031 CAATTTTTAGCGG
1 C-ATTTTTAGCGG
14355044 TATTTTTTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
39 16 0.36
40 29 0.64
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.37
Consensus pattern (40 bp):
CATTTTTAGCGGCGCTTTCCTAGAAAACGCCGCTAATGCT
Found at i:14361374 original size:249 final size:248
Alignment explanation
Indices: 14360934--14361428 Score: 789
Period size: 249 Copynumber: 2.0 Consensus size: 248
14360924 AACACTTCAA
* *
14360934 AAGAAAGTTAACATATGGAGACAAATCACTTATCTAAAACTTACCGAACGATCATAGACAAACAT
1 AAGAAAGTTAACATAAGGAGACAAATCACTTATCTAAAACTTACCGAACGATCACAGACAAACAT
* * *
14360999 GGAGCGACACGAGGCAGAGTGGGGAAAGAAAAATCAAGAAGATAAAGGGTGAAAGAGAGCAGAAA
66 GGAGCGACACGAGGCAGACTGGGAAAAGAAAAATCAAGAAGATAAAGGGTGAAAGAGAGCAAAAA
* *
14361064 TTCGGCAGCAATGAAGAGAAAACGACAAGAGGGTGGAGGGATTTTGGGGAAAGT-AAAAAAAAGA
131 TTCGACAGCAATGAAGAGAAAACGACAAGAGGGTGGAGGGATTTTAGGGAAAGTAAAAAAAAAG-
* * * *
14361128 GAAAAAAACAAATATGAACAGAATATTTGATAACTACCCTAATCCCTTATTTTAG
195 GAAAAAAA-AAAAATGAACAAAATATTTGATAACCACCCCAATCCCTTATTTTAG
* *
14361183 AAGAAAGTTAACA-AAGGAAGACAAATCACTTATCTAAAACTTACCGAACGATCGCAGACAAACG
1 AAGAAAGTTAACATAAGG-AGACAAATCACTTATCTAAAACTTACCGAACGATCACAGACAAACA
*
14361247 TGGAGCGACACGAGGCAGACTGGGAAAAGAAAAATCAAGAAGATGAAGGGTGAAAGAGAGCAAAA
65 TGGAGCGACACGAGGCAGACTGGGAAAAGAAAAATCAAGAAGATAAAGGGTGAAAGAGAGCAAAA
* *
14361312 ATTTGACAGCAATGAAGAGTAAAACGACAAGAGTGTGGAGGGATTTTAGGGAAAGT-AAAAAAAA
130 ATTCGACAGCAATGAAGAG-AAAACGACAAGAGGGTGGAGGGATTTTAGGGAAAGTAAAAAAAAA
14361376 GGAAAAAAAAAAAATGAACAAAATATTTGATAACCACCCCAATCCCTTATTTT
194 GGAAAAAAAAAAAATGAACAAAATATTTGATAACCACCCCAATCCCTTATTTT
14361429 TCTCCATCAA
Statistics
Matches: 228, Mismatches: 16, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
248 43 0.19
249 142 0.62
250 43 0.19
ACGTcount: A:0.47, C:0.13, G:0.23, T:0.17
Consensus pattern (248 bp):
AAGAAAGTTAACATAAGGAGACAAATCACTTATCTAAAACTTACCGAACGATCACAGACAAACAT
GGAGCGACACGAGGCAGACTGGGAAAAGAAAAATCAAGAAGATAAAGGGTGAAAGAGAGCAAAAA
TTCGACAGCAATGAAGAGAAAACGACAAGAGGGTGGAGGGATTTTAGGGAAAGTAAAAAAAAAGG
AAAAAAAAAAAATGAACAAAATATTTGATAACCACCCCAATCCCTTATTTTAG
Found at i:14367536 original size:36 final size:35
Alignment explanation
Indices: 14367501--14367588 Score: 90
Period size: 36 Copynumber: 2.4 Consensus size: 35
14367491 AATTTAATAT
14367501 TAAGATAATCACTTTAAGATTAAATTAATAAAATATTA
1 TAAGATAATCA--TTAA-ATTAAATTAATAAAATATTA
*
14367539 TAAGATAATTATTAAATTAAATTTAATAATAA-ATTA
1 TAAGATAATCATTAAATTAAA-TTAATAA-AATATTA
*
14367575 TTAAAATAAT-ATTA
1 -TAAGATAATCATTA
14367589 TTTTTGAAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
35 6 0.13
36 19 0.42
37 10 0.22
38 10 0.22
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.40
Consensus pattern (35 bp):
TAAGATAATCATTAAATTAAATTAATAAAATATTA
Found at i:14367552 original size:25 final size:24
Alignment explanation
Indices: 14367524--14367589 Score: 64
Period size: 25 Copynumber: 2.7 Consensus size: 24
14367514 TTAAGATTAA
14367524 ATTAATAAAATATTATAAGATAATT
1 ATTAATAAAATATTATAAGA-AATT
* *
14367549 ATTAAATTAAAT-TTAATAATAAATT
1 ATT-AATAAAATATT-ATAAGAAATT
14367574 ATTAA-AATAATATTAT
1 ATTAATAA-AATATTAT
14367590 TTTTGAAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 9
0.74 0.07 0.20
Matches are distributed among these distances:
23 1 0.03
24 7 0.21
25 14 0.41
26 12 0.35
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (24 bp):
ATTAATAAAATATTATAAGAAATT
Found at i:14367588 original size:14 final size:14
Alignment explanation
Indices: 14367526--14367590 Score: 50
Period size: 14 Copynumber: 4.9 Consensus size: 14
14367516 AAGATTAAAT
*
14367526 TAATAAAATATT-A
1 TAATAAATTATTAA
*
14367539 TAAGATAATTATTAA
1 TAATA-AATTATTAA
*
14367554 -ATTAAA-T-TTAA
1 TAATAAATTATTAA
14367565 TAATAAATTATTAA
1 TAATAAATTATTAA
14367579 -AATAATATTATT
1 TAATAA-ATTATT
14367591 TTTGAAATAG
Statistics
Matches: 41, Mismatches: 5, Indels: 11
0.72 0.09 0.19
Matches are distributed among these distances:
11 4 0.10
12 6 0.15
13 12 0.29
14 18 0.44
15 1 0.02
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (14 bp):
TAATAAATTATTAA
Found at i:14371062 original size:43 final size:43
Alignment explanation
Indices: 14370993--14371217 Score: 299
Period size: 43 Copynumber: 5.3 Consensus size: 43
14370983 TTTTAGAAAT
* *
14370993 AAACGCCGCTATAGATCATGACTTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTATAGATCAAGACTTTTAGCGACGCTTTTCCCAC
* * *
14371036 AAACGCCGCTATAGATCAAGAGTTTTAGCGGCGCTTTT-ACAC
1 AAACGCCGCTATAGATCAAGACTTTTAGCGACGCTTTTCCCAC
* * *
14371078 AAACGCTGCTATAGATCAAGACCTTTAGCGACGCTTTTCTCAC
1 AAACGCCGCTATAGATCAAGACTTTTAGCGACGCTTTTCCCAC
* * * *
14371121 AAACGCCGCTATAGATCAAAACCTTTAGCGACGCTTATCTCAC
1 AAACGCCGCTATAGATCAAGACTTTTAGCGACGCTTTTCCCAC
* * * *
14371164 AAACGCCGCTATAGGTCATGACTTTTAACGACACTTTTCCCAC
1 AAACGCCGCTATAGATCAAGACTTTTAGCGACGCTTTTCCCAC
14371207 AAACGCCGCTA
1 AAACGCCGCTA
14371218 AAAACATATA
Statistics
Matches: 162, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
42 37 0.23
43 125 0.77
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTATAGATCAAGACTTTTAGCGACGCTTTTCCCAC
Found at i:14371136 original size:85 final size:86
Alignment explanation
Indices: 14370993--14371217 Score: 319
Period size: 85 Copynumber: 2.6 Consensus size: 86
14370983 TTTTAGAAAT
* * *
14370993 AAACGCCGCTATAGATCATGACTTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAAGAG
1 AAACGCCGCTATAGATCATGACTTTTAGCGACGCTTTTCCCACAAACGCCGCTATAGATCAAAAC
* *
14371058 TTTTAGCGGCGCTT-T-TACAC
66 CTTTAGCGACGCTTATCT-CAC
* * * *
14371078 AAACGCTGCTATAGATCAAGACCTTTAGCGACGCTTTTCTCACAAACGCCGCTATAGATCAAAAC
1 AAACGCCGCTATAGATCATGACTTTTAGCGACGCTTTTCCCACAAACGCCGCTATAGATCAAAAC
14371143 CTTTAGCGACGCTTATCTCAC
66 CTTTAGCGACGCTTATCTCAC
* * *
14371164 AAACGCCGCTATAGGTCATGACTTTTAACGACACTTTTCCCACAAACGCCGCTA
1 AAACGCCGCTATAGATCATGACTTTTAGCGACGCTTTTCCCACAAACGCCGCTA
14371218 AAAACATATA
Statistics
Matches: 122, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
85 70 0.57
86 51 0.42
87 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (86 bp):
AAACGCCGCTATAGATCATGACTTTTAGCGACGCTTTTCCCACAAACGCCGCTATAGATCAAAAC
CTTTAGCGACGCTTATCTCAC
Found at i:14374830 original size:76 final size:78
Alignment explanation
Indices: 14374738--14374895 Score: 241
Period size: 76 Copynumber: 2.1 Consensus size: 78
14374728 ATAAATTGAT
* *
14374738 TTTTTTGCGGCGTTTTTATGAAAACGCCGCTAAATGTTTTGCTACATAAAAT-G-GCTA-TTTTT
1 TTTTTTGCGGCGTTTTTATAAAAACGCCGCTAAATGTTCTGCTACATAAAATGGCGCTACTTTTT
14374800 TAAAGTAAAATTA
66 TAAAGTAAAATTA
* * *
14374813 TTTTTTGTGGCGTTTTTTATAAAAACGCCGCTAAATGTTCTGCTATATGAAATGGCGCTACTTTT
1 TTTTTTGCGGCG-TTTTTATAAAAACGCCGCTAAATGTTCTGCTACATAAAATGGCGCTACTTTT
14374878 TTAAAGTAAAATTA
65 TTAAAGTAAAATTA
14374892 TTTT
1 TTTT
14374896 ACTATCAAAT
Statistics
Matches: 74, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
75 11 0.15
76 36 0.49
77 1 0.01
78 4 0.05
79 22 0.30
ACGTcount: A:0.29, C:0.12, G:0.16, T:0.43
Consensus pattern (78 bp):
TTTTTTGCGGCGTTTTTATAAAAACGCCGCTAAATGTTCTGCTACATAAAATGGCGCTACTTTTT
TAAAGTAAAATTA
Found at i:14375551 original size:21 final size:22
Alignment explanation
Indices: 14375527--14375578 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
14375517 GACCTTGAAT
* *
14375527 CTCTAAACCCTAAATCACTAA-
1 CTCTAAACCCCAAACCACTAAC
*
14375548 CTCTTAACCCCAAACCACTAAC
1 CTCTAAACCCCAAACCACTAAC
14375570 CTCTAAACC
1 CTCTAAACC
14375579 TTATTTAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 18 0.69
22 8 0.31
ACGTcount: A:0.38, C:0.40, G:0.00, T:0.21
Consensus pattern (22 bp):
CTCTAAACCCCAAACCACTAAC
Found at i:14375676 original size:89 final size:89
Alignment explanation
Indices: 14375560--14375722 Score: 247
Period size: 89 Copynumber: 1.8 Consensus size: 89
14375550 CTTAACCCCA
* **
14375560 AACCACTAACCTCTAAACCTTATTTAATATAGAAATTAAAAAACACTAATTAATCTAAATTATAA
1 AACCACTAACCCCTAAACCTTATTTAATATAGAAATTAAAAAACACTAATTAATCTAAACCATAA
14375625 ACCCTAACCCGACACCAAATCCAT
66 ACCCTAACCCGACACCAAATCCAT
* * * *
14375649 AACCCCTAACCCCTAAACAC-TATTTAATATATAAATTAAAATACACTAATTAATCTAAACCCTA
1 AACCACTAACCCCTAAAC-CTTATTTAATATAGAAATTAAAAAACACTAATTAATCTAAACCATA
14375713 AACCCTAACC
65 AACCCTAACC
14375723 TAACACTAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
89 65 0.98
90 1 0.02
ACGTcount: A:0.47, C:0.26, G:0.01, T:0.26
Consensus pattern (89 bp):
AACCACTAACCCCTAAACCTTATTTAATATAGAAATTAAAAAACACTAATTAATCTAAACCATAA
ACCCTAACCCGACACCAAATCCAT
Found at i:14375753 original size:89 final size:89
Alignment explanation
Indices: 14375559--14375745 Score: 243
Period size: 89 Copynumber: 2.1 Consensus size: 89
14375549 TCTTAACCCC
* **
14375559 AAACCACTAACCTCTAAACCTTATTTAATATAGAAATTAAAAAACACTAATTAATCTAAATTATA
1 AAACC-CTAACCCCTAAACCTTATTTAATATAGAAATTAAAAAACACTAATTAATCTAAACCATA
*
14375624 AACCCTAACCCGACACCAAATCCAT
65 AACCCTAACCCAACACCAAATCCAT
* * * *
14375649 AACCCCTAACCCCTAAACAC-TATTTAATATATAAATTAAAATACACTAATTAATCTAAACCCTA
1 AAACCCTAACCCCTAAAC-CTTATTTAATATAGAAATTAAAAAACACTAATTAATCTAAACCATA
* * *
14375713 AACCCTAACCTAACA-CTAATCTAT
65 AACCCTAACCCAACACCAAATCCAT
14375737 AAACCCTAA
1 AAACCCTAA
14375746 ATCCCTAACT
Statistics
Matches: 84, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
88 15 0.18
89 64 0.76
90 5 0.06
ACGTcount: A:0.47, C:0.26, G:0.01, T:0.26
Consensus pattern (89 bp):
AAACCCTAACCCCTAAACCTTATTTAATATAGAAATTAAAAAACACTAATTAATCTAAACCATAA
ACCCTAACCCAACACCAAATCCAT
Found at i:14375762 original size:14 final size:14
Alignment explanation
Indices: 14375738--14375784 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
14375728 CTAATCTATA
*
14375738 AACCCTAAATCCCT
1 AACCCTTAATCCCT
* *
14375752 AACTCTTAATCTCT
1 AACCCTTAATCCCT
*
14375766 AACCCTTAACCCCT
1 AACCCTTAATCCCT
14375780 AACCC
1 AACCC
14375785 ATAACCTATA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.32, C:0.43, G:0.00, T:0.26
Consensus pattern (14 bp):
AACCCTTAATCCCT
Found at i:14375769 original size:28 final size:28
Alignment explanation
Indices: 14375721--14375803 Score: 78
Period size: 28 Copynumber: 2.9 Consensus size: 28
14375711 TAAACCCTAA
*
14375721 CCTAACACTAATCTATAAACCCTAAATC
1 CCTAACACTAATCTATAAACCCTAAACC
* * *
14375749 CCTAACTCTTAATCTCT-AACCCTTAACC
1 CCTAACAC-TAATCTATAAACCCTAAACC
* * *
14375777 CCTAACCCATAACCTATAAACCTTAAA
1 CCTAACAC-TAATCTATAAACCCTAAA
14375804 TCACAACCCT
Statistics
Matches: 43, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
28 29 0.67
29 14 0.33
ACGTcount: A:0.39, C:0.35, G:0.00, T:0.27
Consensus pattern (28 bp):
CCTAACACTAATCTATAAACCCTAAACC
Found at i:14376406 original size:40 final size:39
Alignment explanation
Indices: 14376336--14376444 Score: 132
Period size: 40 Copynumber: 2.8 Consensus size: 39
14376326 TTTCCAAAAA
* * *
14376336 ACGCTAATGCT-AATTTTTAGCGGCGCTTTACTGGAAATGC
1 ACGCTAATGCTCGATTTTTAGTGGCGTTTTAC-GGAAAT-C
* *
14376376 -CGCTAATGCTCGATCTTTAGTGGCGTTTTACGTAAATC
1 ACGCTAATGCTCGATTTTTAGTGGCGTTTTACGGAAATC
14376414 ACTGCTAATGCTCGATTTTTAGTGGCGTTTT
1 AC-GCTAATGCTCGATTTTTAGTGGCGTTTT
14376445 TTGTCCAAAC
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
38 1 0.02
39 16 0.27
40 43 0.72
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (39 bp):
ACGCTAATGCTCGATTTTTAGTGGCGTTTTACGGAAATC
Found at i:14379959 original size:16 final size:16
Alignment explanation
Indices: 14379938--14379982 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
14379928 TGAAAATATT
14379938 TATATTTTATATTTTA
1 TATATTTTATATTTTA
*
14379954 TATATTTT-TAAGTTTA
1 TATATTTTAT-ATTTTA
*
14379970 TATATTATATATT
1 TATATTTTATATT
14379983 ATAAACTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
15 1 0.04
16 22 0.92
17 1 0.04
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (16 bp):
TATATTTTATATTTTA
Found at i:14379993 original size:30 final size:30
Alignment explanation
Indices: 14379936--14379993 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
14379926 GGTGAAAATA
* * * *
14379936 TTTATATTTTATATTTTATATATTTTTAAG
1 TTTATATATTATATATTATAAACTTTTAAG
14379966 TTTATATATTATATATTATAAACTTTTA
1 TTTATATATTATATATTATAAACTTTTA
14379994 TATATATTTC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (30 bp):
TTTATATATTATATATTATAAACTTTTAAG
Found at i:14384998 original size:26 final size:26
Alignment explanation
Indices: 14384856--14385007 Score: 80
Period size: 26 Copynumber: 5.9 Consensus size: 26
14384846 AAACAATTTT
* * *
14384856 AAACAATTTAAAATAAACATTACATG
1 AAACAATTTAAAATAAATAATATATG
* * * * * **
14384882 AAATAGTTTAAAAGAAATGACACCT-
1 AAACAATTTAAAATAAATAATATATG
* *
14384907 AAA-AATCTAAAATAAATAATATACATA
1 AAACAATTTAAAATAAATAATAT--ATG
* *
14384934 AAACAGTTTAAGAT-AA-AATA-ATAG
1 AAACAATTTAAAATAAATAATATAT-G
**
14384958 AAAGCAATTCGAAATAAATAATATATG
1 AAA-CAATTTAAAATAAATAATATATG
*
14384985 AAACAATTTAAAATAGATAATAT
1 AAACAATTTAAAATAAATAATAT
14385008 CAAACAGTTT
Statistics
Matches: 91, Mismatches: 26, Indels: 18
0.67 0.19 0.13
Matches are distributed among these distances:
23 2 0.02
24 16 0.18
25 10 0.11
26 41 0.45
27 13 0.14
28 9 0.10
ACGTcount: A:0.59, C:0.08, G:0.07, T:0.26
Consensus pattern (26 bp):
AAACAATTTAAAATAAATAATATATG
Found at i:14385012 original size:24 final size:22
Alignment explanation
Indices: 14384973--14385019 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 22
14384963 AATTCGAAAT
*
14384973 AAATAATATATGAAACAATTTA
1 AAATAATATATCAAACAATTTA
*
14384995 AAATAGATAATATCAAACAGTTTA
1 AAATA-AT-ATATCAAACAATTTA
14385019 A
1 A
14385020 TATGAACAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 5 0.24
23 2 0.10
24 14 0.67
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.30
Consensus pattern (22 bp):
AAATAATATATCAAACAATTTA
Found at i:14386094 original size:18 final size:18
Alignment explanation
Indices: 14386073--14386107 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
14386063 TTAATTTTAT
14386073 TTTATTTGTTTTTTTTTG
1 TTTATTTGTTTTTTTTTG
14386091 TTTATTTGTTTTTTTTT
1 TTTATTTGTTTTTTTTT
14386108 TCTAATGGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.06, C:0.00, G:0.09, T:0.86
Consensus pattern (18 bp):
TTTATTTGTTTTTTTTTG
Found at i:14394394 original size:32 final size:33
Alignment explanation
Indices: 14394358--14394424 Score: 109
Period size: 32 Copynumber: 2.1 Consensus size: 33
14394348 GGATTGATTT
14394358 ATATTTCATATATCATTATATT-AATTACTTAA
1 ATATTTCATATATCATTATATTAAATTACTTAA
* *
14394390 ATATTTCATGTATCATTATATTAAATTATTTAA
1 ATATTTCATATATCATTATATTAAATTACTTAA
14394423 AT
1 AT
14394425 CTTATTTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 21 0.66
33 11 0.34
ACGTcount: A:0.40, C:0.07, G:0.01, T:0.51
Consensus pattern (33 bp):
ATATTTCATATATCATTATATTAAATTACTTAA
Found at i:14394442 original size:31 final size:32
Alignment explanation
Indices: 14394362--14394453 Score: 100
Period size: 32 Copynumber: 2.9 Consensus size: 32
14394352 TGATTTATAT
* * *
14394362 TTCATATATCATTATATTAATTACTTAAATAT
1 TTCATGTATCATTATATTAATTATTTAAATAC
14394394 TTCATGTATCATTATATTAAATTATTTAAAT-C
1 TTCATGTATCATTATATT-AATTATTTAAATAC
* *
14394426 TT-ATTTATTATTATATTTAATT-TTTAAA
1 TTCATGTATCATTATA-TTAATTATTTAAA
14394454 ATATGTTATA
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
30 6 0.11
31 15 0.28
32 21 0.40
33 11 0.21
ACGTcount: A:0.38, C:0.07, G:0.01, T:0.54
Consensus pattern (32 bp):
TTCATGTATCATTATATTAATTATTTAAATAC
Found at i:14401017 original size:27 final size:26
Alignment explanation
Indices: 14400974--14401027 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 26
14400964 ATTAATAATG
14400974 ATAAAATTATACTTTAACTCTCTAAAA
1 ATAAAATTATACTTTAA-TCTCTAAAA
* *
14401001 ATAAAATTTTAAC-TTAATCTTTAAAA
1 ATAAAATTAT-ACTTTAATCTCTAAAA
14401027 A
1 A
14401028 AATCATATAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 9 0.38
27 13 0.54
28 2 0.08
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (26 bp):
ATAAAATTATACTTTAATCTCTAAAA
Found at i:14402230 original size:41 final size:41
Alignment explanation
Indices: 14402166--14402276 Score: 105
Period size: 41 Copynumber: 2.7 Consensus size: 41
14402156 ATTATTCCTA
* * * * * *
14402166 AATTGCACATATGTGCTCTTGTTTGTACTTTAATATCCTTG
1 AATTGCACATACGTGCCCCTGTTTGTACTTCAATACCCCTG
* * * **
14402207 AATTGAACATACGTGCCCCTGTTTATGCTTCGGTACCCCTG
1 AATTGCACATACGTGCCCCTGTTTGTACTTCAATACCCCTG
**
14402248 AATTGCACATACGTGCCCCTACTTGTACT
1 AATTGCACATACGTGCCCCTGTTTGTACT
14402277 CTGGTACCCC
Statistics
Matches: 54, Mismatches: 16, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.37
Consensus pattern (41 bp):
AATTGCACATACGTGCCCCTGTTTGTACTTCAATACCCCTG
Found at i:14402283 original size:41 final size:41
Alignment explanation
Indices: 14402205--14402291 Score: 113
Period size: 41 Copynumber: 2.1 Consensus size: 41
14402195 TTAATATCCT
** *
14402205 TGAATTGAACATACGTGCCCCTGTTTATGCTTCGGTACCCC
1 TGAATTGAACATACGTGCCCCTACTTATACTTCGGTACCCC
* *
14402246 TGAATTGCACATACGTGCCCCTACTTGTAC-TCTGGTACCCC
1 TGAATTGAACATACGTGCCCCTACTTATACTTC-GGTACCCC
14402287 TGAAT
1 TGAAT
14402292 GCATTTTTGT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 2 0.05
41 38 0.95
ACGTcount: A:0.21, C:0.30, G:0.18, T:0.31
Consensus pattern (41 bp):
TGAATTGAACATACGTGCCCCTACTTATACTTCGGTACCCC
Found at i:14417011 original size:30 final size:30
Alignment explanation
Indices: 14416968--14417049 Score: 107
Period size: 30 Copynumber: 2.8 Consensus size: 30
14416958 AGTTTTTTTT
14416968 ATTATTTTATTTAATATTAATA-TAATATA
1 ATTATTTTATTTAATATTAATATTAATATA
14416997 ATTATTTCTATTTAATATTAATATTAATATA
1 ATTATTT-TATTTAATATTAATATTAATATA
* * *
14417028 A-AATTTAATTTATTATT-ATATT
1 ATTATTTTATTTAATATTAATATT
14417050 CTTTTTGAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
28 5 0.10
29 16 0.33
30 19 0.40
31 8 0.17
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.56
Consensus pattern (30 bp):
ATTATTTTATTTAATATTAATATTAATATA
Found at i:14418213 original size:32 final size:31
Alignment explanation
Indices: 14418163--14418229 Score: 82
Period size: 33 Copynumber: 2.1 Consensus size: 31
14418153 TATTTAAATT
* * *
14418163 AATTTTTCTATTATTAAA-TAGATTAATTAA
1 AATTTTTCTATTAATAAATTAAATAAATTAA
14418193 AATTTTATACTATTAATAAATTAAATAAATTAA
1 AATTTT-T-CTATTAATAAATTAAATAAATTAA
14418226 AATT
1 AATT
14418230 AGAATTGAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 6 0.19
31 1 0.03
32 10 0.32
33 14 0.45
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.46
Consensus pattern (31 bp):
AATTTTTCTATTAATAAATTAAATAAATTAA
Found at i:14422961 original size:23 final size:22
Alignment explanation
Indices: 14422933--14422977 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
14422923 AAATTAAATA
14422933 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-AAATCATATCT
*
14422956 TCTAAGATTACATATCATATCT
1 TCTAAGATTACAAATCATATCT
14422978 AAGATTGCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.38
Consensus pattern (22 bp):
TCTAAGATTACAAATCATATCT
Found at i:14422980 original size:19 final size:19
Alignment explanation
Indices: 14422930--14423030 Score: 121
Period size: 19 Copynumber: 5.0 Consensus size: 19
14422920 TACAAATTAA
*
14422930 ATATCTAAGATTACAAAATC
1 ATATCTAAGATTAC-ATATC
14422950 ATATCTTCTAAGATTACATATC
1 ATA---TCTAAGATTACATATC
*
14422972 ATATCTAAGATTGCATATATC
1 ATATCTAAGATT--ACATATC
*
14422993 ATATCTAAGATTGCATATC
1 ATATCTAAGATTACATATC
14423012 ATATCTAAGATTACATATC
1 ATATCTAAGATTACATATC
14423031 CTCGAAGATT
Statistics
Matches: 71, Mismatches: 5, Indels: 11
0.82 0.06 0.13
Matches are distributed among these distances:
19 32 0.45
20 3 0.04
21 18 0.25
22 7 0.10
23 11 0.15
ACGTcount: A:0.41, C:0.16, G:0.07, T:0.37
Consensus pattern (19 bp):
ATATCTAAGATTACATATC
Found at i:14422993 original size:21 final size:21
Alignment explanation
Indices: 14422967--14423029 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
14422957 CTAAGATTAC
14422967 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
14422988 ATATCATATCTAAGATTGC--
1 ATATCATATCTAAGATTGCAT
*
14423007 ATATCATATCTAAGATTACAT
1 ATATCATATCTAAGATTGCAT
14423028 AT
1 AT
14423030 CCTCGAAGAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
19 18 0.46
21 21 0.54
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.38
Consensus pattern (21 bp):
ATATCATATCTAAGATTGCAT
Found at i:14423010 original size:40 final size:41
Alignment explanation
Indices: 14422930--14423029 Score: 141
Period size: 40 Copynumber: 2.4 Consensus size: 41
14422920 TACAAATTAA
*
14422930 ATATCTAAGATTACA-AAATCATATCTTCTAAGATTACATATC
1 ATATCTAAGATTACATATATCATA--TTCTAAGATTACATATC
* *
14422972 ATATCTAAGATTGCATATATCATA-TCTAAGATTGCATATC
1 ATATCTAAGATTACATATATCATATTCTAAGATTACATATC
14423012 ATATCTAAGATTACATAT
1 ATATCTAAGATTACATAT
14423030 CCTCGAAGAT
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
40 32 0.60
42 14 0.26
43 7 0.13
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (41 bp):
ATATCTAAGATTACATATATCATATTCTAAGATTACATATC
Found at i:14423714 original size:50 final size:50
Alignment explanation
Indices: 14423599--14423841 Score: 290
Period size: 50 Copynumber: 4.8 Consensus size: 50
14423589 GATAATAACA
* * ** *
14423599 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCATCTCAG
* * *
14423650 TGCCCATGCCATGTCCCATACATGGTCTTAC-GGGAGACCTCTCATCTCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAGGG-GACCTCTCATCTCAG
* * *
14423700 TGTCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCAG
* * * * *
14423750 TGCCAACGCCATGTTCCAAACATGGTATTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCAG
* **
14423800 TGCCAACGTCATGTCCCAGACATGGTCTTACTTGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
14423842 TTACCCAAAT
Statistics
Matches: 168, Mismatches: 22, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
50 136 0.81
51 32 0.19
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCAG
Found at i:14423789 original size:100 final size:100
Alignment explanation
Indices: 14423599--14423841 Score: 326
Period size: 100 Copynumber: 2.4 Consensus size: 100
14423589 GATAATAACA
* ** * *
14423599 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCAGTGCCCATGCCATGT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATATCAGTGCCAACGCCATGT
* *
14423664 CCCATACATGGTCTTACGGGAGACCTCTCATCTCAG
65 CCCAAACATGGTATTACGGGAGACCTCTCATCTCAG
* * * *
14423700 TGTCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAGTGCCAACGCCATGTC
* *
14423765 CCAAACATGGTATTACATGG-GACCTCTCATCTCGG
66 CCAAACATGGTATTAC-GGGAGACCTCTCATCTCAG
* *
14423800 TGCCAACGTCATGTCCCAGACATGGTCTTACTTGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
14423842 TTACCCAAAT
Statistics
Matches: 125, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
100 88 0.70
101 37 0.30
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (100 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAGTGCCAACGCCATGTC
CCAAACATGGTATTACGGGAGACCTCTCATCTCAG
Found at i:14439382 original size:21 final size:21
Alignment explanation
Indices: 14439353--14439403 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
14439343 GAAGCTTCAA
*
14439353 GGAAGTTTCCTTAGAATTTCT
1 GGAATTTTCCTTAGAATTTCT
*
14439374 GGAATTTTCCTTAGAATTTTT
1 GGAATTTTCCTTAGAATTTCT
*
14439395 AGAATTTTC
1 GGAATTTTC
14439404 AGCTGACCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.25, C:0.12, G:0.16, T:0.47
Consensus pattern (21 bp):
GGAATTTTCCTTAGAATTTCT
Found at i:14440611 original size:2 final size:2
Alignment explanation
Indices: 14440604--14440628 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14440594 AATAGAGATT
14440604 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
14440629 TAAATACACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:14444447 original size:30 final size:29
Alignment explanation
Indices: 14444393--14444640 Score: 115
Period size: 29 Copynumber: 8.6 Consensus size: 29
14444383 CAATGGTTGT
* *
14444393 AACCATCCTTTTTTATATTCGATGGTCGA
1 AACCATCCTTTTTCATAATCGATGGTCGA
*
14444422 AACCATCCTTTTTCATTAATCGATGGTCGT
1 AACCATCCTTTTTCA-TAATCGATGGTCGA
* * * *
14444452 TACCATCCCTTTTCATAATCGATAGCCGA
1 AACCATCCTTTTTCATAATCGATGGTCGA
* * * * * * * *
14444481 AGCTATCCCTTTCCACATTCGATAG-CCA
1 AACCATCCTTTTTCATAATCGATGGTCGA
** * * * *
14444509 AAGTTATCCCTTTTCAT-TTCGATAGACGA
1 AA-CCATCCTTTTTCATAATCGATGGTCGA
* * * * * * *
14444538 AACTATCCCTTTTCACATTTGATAG-CCA
1 AACCATCCTTTTTCATAATCGATGGTCGA
* * *
14444566 AAGCTATCCTTTTTCATATTCGATGGTCGT
1 AA-CCATCCTTTTTCATAATCGATGGTCGA
* * * *
14444596 CACCATCCCTTTTCATAATCGATAGACGA
1 AACCATCCTTTTTCATAATCGATGGTCGA
* *
14444625 AACTATCCCTTTTCAT
1 AACCATCCTTTTTCAT
14444641 TATCTGAGGT
Statistics
Matches: 174, Mismatches: 39, Indels: 12
0.77 0.17 0.05
Matches are distributed among these distances:
28 27 0.16
29 120 0.69
30 27 0.16
ACGTcount: A:0.26, C:0.27, G:0.11, T:0.36
Consensus pattern (29 bp):
AACCATCCTTTTTCATAATCGATGGTCGA
Found at i:14444549 original size:57 final size:58
Alignment explanation
Indices: 14444456--14444640 Score: 203
Period size: 58 Copynumber: 3.2 Consensus size: 58
14444446 GGTCGTTACC
* * * *
14444456 ATCCCTTTTCATAATCGATAGCCGAAGCTATCCCTTTCCACATTCGATAGCCAAAGTT
1 ATCCCTTTTCATATTCGATAGACGAAACTATCCCTTTCCACATTCGATAGCCAAAGCT
* *
14444514 ATCCCTTTTCAT-TTCGATAGACGAAACTATCCCTTTTCACATTTGATAGCCAAAGCT
1 ATCCCTTTTCATATTCGATAGACGAAACTATCCCTTTCCACATTCGATAGCCAAAGCT
* * * ** * * * * *
14444571 ATCCTTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATAATCGATAGACGAAA-CT
1 ATCCCTTTTCATATTCGATAGACGAAACTATCCCTTTCCACATTCGATAG-CCAAAGCT
14444629 ATCCCTTTTCAT
1 ATCCCTTTTCAT
14444641 TATCTGAGGT
Statistics
Matches: 108, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
57 50 0.46
58 54 0.50
59 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.35
Consensus pattern (58 bp):
ATCCCTTTTCATATTCGATAGACGAAACTATCCCTTTCCACATTCGATAGCCAAAGCT
Found at i:14444620 original size:58 final size:58
Alignment explanation
Indices: 14444397--14444640 Score: 188
Period size: 58 Copynumber: 4.2 Consensus size: 58
14444387 GGTTGTAACC
* * * * * * * *** *
14444397 ATCCTTTTTTATATTCGATGGTCGAAACCATCCTTTTTCATTAATCGATGGTCGTTACC
1 ATCCCTTTTCATATTCGATAGTCGAAACCATCCCTTTTCA-CAATCGATAGACCAAACT
* * * * * * *
14444456 ATCCCTTTTCATAATCGATAGCCGAAGCTATCCCTTTCCACATTCGATAG-CCAAAGTT
1 ATCCCTTTTCATATTCGATAGTCGAAACCATCCCTTTTCACAATCGATAGACCAAA-CT
* * * *
14444514 ATCCCTTTTCAT-TTCGATAGACGAAACTATCCCTTTTCACATTTGATAG-CCAAAGCT
1 ATCCCTTTTCATATTCGATAGTCGAAACCATCCCTTTTCACAATCGATAGACCAAA-CT
* * ** * *
14444571 ATCCTTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATAATCGATAGACGAAACT
1 ATCCCTTTTCATATTCGATAGTCGAAACCATCCCTTTTCACAATCGATAGACCAAACT
14444629 ATCCCTTTTCAT
1 ATCCCTTTTCAT
14444641 TATCTGAGGT
Statistics
Matches: 148, Mismatches: 34, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
57 52 0.35
58 61 0.41
59 35 0.24
ACGTcount: A:0.25, C:0.26, G:0.11, T:0.37
Consensus pattern (58 bp):
ATCCCTTTTCATATTCGATAGTCGAAACCATCCCTTTTCACAATCGATAGACCAAACT
Found at i:14455761 original size:22 final size:21
Alignment explanation
Indices: 14455735--14455799 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
14455725 CGCACTGTAG
14455735 ACAGAATGGCTAAAAGCCATA
1 ACAGAATGGCTAAAAGCCATA
* * *
14455756 AGCAGAAAGG-TAGTAAGCCTTGA
1 A-CAGAATGGCTA-AAAGCCAT-A
*
14455779 ACAGAATGGCTACAAGCCATA
1 ACAGAATGGCTAAAAGCCATA
14455800 CACTTCCTCC
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
21 4 0.12
22 26 0.76
23 4 0.12
ACGTcount: A:0.43, C:0.18, G:0.23, T:0.15
Consensus pattern (21 bp):
ACAGAATGGCTAAAAGCCATA
Found at i:14457612 original size:24 final size:24
Alignment explanation
Indices: 14457566--14457612 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
14457556 TTAAATTTCC
* *
14457566 TTGATTTTCTCCCAAATCTCCTCA
1 TTGATTTGCTCCCAAAACTCCTCA
14457590 TTGATTTGCTCCACAAAAC-CCTC
1 TTGATTTGCTCC-CAAAACTCCTC
14457613 CAAGACCAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.23, C:0.34, G:0.06, T:0.36
Consensus pattern (24 bp):
TTGATTTGCTCCCAAAACTCCTCA
Found at i:14462998 original size:15 final size:17
Alignment explanation
Indices: 14462978--14463018 Score: 59
Period size: 15 Copynumber: 2.5 Consensus size: 17
14462968 TTTACATGTG
*
14462978 AAACTATAGAGTT-T-A
1 AAACTATAGAATTATGA
14462993 AAACTATAGAATTATGA
1 AAACTATAGAATTATGA
14463010 AAACTATAG
1 AAACTATAG
14463019 GTTGTGAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 12 0.52
16 1 0.04
17 10 0.43
ACGTcount: A:0.51, C:0.07, G:0.12, T:0.29
Consensus pattern (17 bp):
AAACTATAGAATTATGA
Found at i:14472792 original size:29 final size:29
Alignment explanation
Indices: 14472760--14472948 Score: 136
Period size: 29 Copynumber: 6.5 Consensus size: 29
14472750 GATCGTCACC
* * **
14472760 ATCCCTTTTCATAATCGATGGTTAAAGCT
1 ATCCCTTTTCATATTCGATAGCCAAAGCT
*
14472789 ATCCCTTTTCATATTCGATAGCCGAAGCT
1 ATCCCTTTTCATATTCGATAGCCAAAGCT
* * * *
14472818 ATCCCTTTTCATATTTGAT-GTTCATCA-CC
1 ATCCCTTTTCATATTCGATAG-CCA-AAGCT
* * * *
14472847 ATCCCTTTTCATAGTT-GATGGTCATCA-CC
1 ATCCCTTTTCATA-TTCGATAGCCA-AAGCT
*
14472876 ATCCCTTTTCATAATT-GATAGCCGAAGCT
1 ATCCCTTTTCAT-ATTCGATAGCCAAAGCT
** *
14472905 ATCCCTTTTCATATTCGATAGCTGAAGGT
1 ATCCCTTTTCATATTCGATAGCCAAAGCT
*
14472934 ATCTCTTTTCATATT
1 ATCCCTTTTCATATT
14472949 TGATGACCGT
Statistics
Matches: 135, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
28 5 0.04
29 125 0.93
30 5 0.04
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.40
Consensus pattern (29 bp):
ATCCCTTTTCATATTCGATAGCCAAAGCT
Found at i:14472851 original size:58 final size:57
Alignment explanation
Indices: 14472784--14472953 Score: 152
Period size: 58 Copynumber: 2.9 Consensus size: 57
14472774 TCGATGGTTA
* *
14472784 AAGCTATCCCTTTTCATATTCGATAGCCGAAGCTATCCCTTTTCATATTTGATGTTC-
1 AAGCCATCCCTTTTCATATTCGATAGCCGAAGCTATCCCTTTTCATATTTGATG-CCG
* * * *
14472841 ATCA-CCATCCCTTTTCATAGTT-GATGGTC-ATCA-CCATCCCTTTTCATAATTGATAGCCG
1 A--AGCCATCCCTTTTCATA-TTCGATAGCCGA--AGCTATCCCTTTTCATATTTGAT-GCCG
* * * *
14472900 AAGCTATCCCTTTTCATATTCGATAGCTGAAGGTATCTCTTTTCATATTTGATG
1 AAGCCATCCCTTTTCATATTCGATAGCCGAAGCTATCCCTTTTCATATTTGATG
14472954 ACCGTCGATA
Statistics
Matches: 88, Mismatches: 14, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
57 7 0.08
58 74 0.84
59 7 0.08
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (57 bp):
AAGCCATCCCTTTTCATATTCGATAGCCGAAGCTATCCCTTTTCATATTTGATGCCG
Found at i:14472867 original size:87 final size:87
Alignment explanation
Indices: 14472696--14472919 Score: 272
Period size: 87 Copynumber: 2.6 Consensus size: 87
14472686 ATGATGGTTG
* * * * * * * * *
14472696 TAACCATACCTTTTCATATTCAATGGTCGAAACCATCCATTTTCATTAATTGATGATCGTCACCA
1 TAACCATCCCTTTTCATATTCGATAGCCGAAGCTATCCCTTTTCA-TATTTGATGATCATCACCA
*
14472761 TCCCTTTTCATAATCGATGGTTA
65 TCCCTTTTCATAATCGATGGTCA
* *
14472784 -AAGCTATCCCTTTTCATATTCGATAGCCGAAGCTATCCCTTTTCATATTTGATGTTCATCACCA
1 TAA-CCATCCCTTTTCATATTCGATAGCCGAAGCTATCCCTTTTCATATTTGATGATCATCACCA
* *
14472848 TCCCTTTTCATAGTTGATGGTCA
65 TCCCTTTTCATAATCGATGGTCA
*
14472871 TCACCATCCCTTTTCATAATT-GATAGCCGAAGCTATCCCTTTTCATATT
1 TAACCATCCCTTTTCAT-ATTCGATAGCCGAAGCTATCCCTTTTCATATT
14472920 CGATAGCTGA
Statistics
Matches: 117, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
87 79 0.68
88 38 0.32
ACGTcount: A:0.25, C:0.25, G:0.11, T:0.38
Consensus pattern (87 bp):
TAACCATCCCTTTTCATATTCGATAGCCGAAGCTATCCCTTTTCATATTTGATGATCATCACCAT
CCCTTTTCATAATCGATGGTCA
Found at i:14472909 original size:116 final size:117
Alignment explanation
Indices: 14472727--14472953 Score: 339
Period size: 116 Copynumber: 1.9 Consensus size: 117
14472717 AATGGTCGAA
* * **
14472727 ACCATCCATTTTCATTAATTGATGATCGTCACCATCCCTTTTCATAATCGATGGTTAAAGCTATC
1 ACCATCCATTTTCATTAATTGATGATCATCACCATCCCTTTTCATAATCGATAGCCAAAGCTATC
14472792 CCTTTTCATATTCGATAGCCGAAGCTATCCCTTTTCATATTTGATGTTCATC
66 CCTTTTCATATTCGATAGCCGAAGCTATCCCTTTTCATATTTGATGTTCATC
* * * * *
14472844 ACCATCCCTTTTCA-TAGTTGATGGTCATCACCATCCCTTTTCATAATTGATAGCCGAAGCTATC
1 ACCATCCATTTTCATTAATTGATGATCATCACCATCCCTTTTCATAATCGATAGCCAAAGCTATC
* * *
14472908 CCTTTTCATATTCGATAGCTGAAGGTATCTCTTTTCATATTTGATG
66 CCTTTTCATATTCGATAGCCGAAGCTATCCCTTTTCATATTTGATG
14472954 ACCGTCGATA
Statistics
Matches: 98, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
116 85 0.87
117 13 0.13
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.39
Consensus pattern (117 bp):
ACCATCCATTTTCATTAATTGATGATCATCACCATCCCTTTTCATAATCGATAGCCAAAGCTATC
CCTTTTCATATTCGATAGCCGAAGCTATCCCTTTTCATATTTGATGTTCATC
Found at i:14479004 original size:124 final size:124
Alignment explanation
Indices: 14478783--14479032 Score: 473
Period size: 124 Copynumber: 2.0 Consensus size: 124
14478773 AATGGTGTAA
*
14478783 TAATAAATTTTAATTTAATGATTTTTGGTTAAATGGAAGAGCAATTAGGTTCAAGTGGTTGGACC
1 TAATAAATTTTAATTTAATGATTTTTGGTTAAATGGAAGAACAATTAGGTTCAAGTGGTTGGACC
14478848 CATTTAGAAAATGAGGTATTAGAACCTCGTTTCTATAAATTGAGATATTTACGGAGTGT
66 CATTTAGAAAATGAGGTATTAGAACCTCGTTTCTATAAATTGAGATATTTACGGAGTGT
14478907 TAATAAATTTTAATTTAATGATTTTTGGTTAAATGGAAGAACAATTAGGTTCAAGTGGTTGGACC
1 TAATAAATTTTAATTTAATGATTTTTGGTTAAATGGAAGAACAATTAGGTTCAAGTGGTTGGACC
* *
14478972 CATTTAGAAAATGAGGTATTAGGACCTTGTTTCTATAAATTGAGATATTTACGGAGTGT
66 CATTTAGAAAATGAGGTATTAGAACCTCGTTTCTATAAATTGAGATATTTACGGAGTGT
14479031 TA
1 TA
14479033 CTAAGGTTGT
Statistics
Matches: 123, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
124 123 1.00
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.38
Consensus pattern (124 bp):
TAATAAATTTTAATTTAATGATTTTTGGTTAAATGGAAGAACAATTAGGTTCAAGTGGTTGGACC
CATTTAGAAAATGAGGTATTAGAACCTCGTTTCTATAAATTGAGATATTTACGGAGTGT
Found at i:14487232 original size:3 final size:3
Alignment explanation
Indices: 14487219--14487257 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
14487209 TTGATGTTGT
*
14487219 TGC TGC AGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
14487258 AGTGGAGGTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.03, C:0.33, G:0.33, T:0.31
Consensus pattern (3 bp):
TGC
Found at i:14487338 original size:6 final size:6
Alignment explanation
Indices: 14487291--14487363 Score: 74
Period size: 6 Copynumber: 12.2 Consensus size: 6
14487281 CTGTGGCTTT
* * * *
14487291 GACTGT GACTGC GACTGT GACTGA GACTCA GACTGA GACTGA GACTGA
1 GACTGA GACTGA GACTGA GACTGA GACTGA GACTGA GACTGA GACTGA
* * * *
14487339 GGCTGA GGCTGA GGCTGA GGCTGA G
1 GACTGA GACTGA GACTGA GACTGA G
14487364 GCTGCTGCTG
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 61 1.00
ACGTcount: A:0.23, C:0.19, G:0.38, T:0.19
Consensus pattern (6 bp):
GACTGA
Found at i:14487409 original size:18 final size:18
Alignment explanation
Indices: 14487339--14487412 Score: 51
Period size: 18 Copynumber: 4.1 Consensus size: 18
14487329 CTGAGACTGA
* *
14487339 GGCTGAGGCTGAGGCTGA
1 GGCTGAGGCTGCGGCTGT
*
14487357 GGCTGAGGCTGCTGCTG-
1 GGCTGAGGCTGCGGCTGT
*** * *
14487374 GTGAAAAAGATGCGGCTGT
1 G-GCTGAGGCTGCGGCTGT
*
14487393 GGCTGAGGCTGCTGCTGT
1 GGCTGAGGCTGCGGCTGT
14487411 GG
1 GG
14487413 TGGTTGTGGC
Statistics
Matches: 40, Mismatches: 14, Indels: 4
0.69 0.24 0.07
Matches are distributed among these distances:
17 1 0.03
18 38 0.95
19 1 0.03
ACGTcount: A:0.15, C:0.18, G:0.46, T:0.22
Consensus pattern (18 bp):
GGCTGAGGCTGCGGCTGT
Found at i:14495267 original size:245 final size:248
Alignment explanation
Indices: 14494836--14495366 Score: 838
Period size: 245 Copynumber: 2.1 Consensus size: 248
14494826 TTTATTAAGA
* * * *
14494836 AAATCGCTCCCACGTGGACGCGTTTTTGATACAGTAGGTCCTGAAAAAATAATTTTGAGTTGACG
1 AAATCGCTCCCACATGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGACG
14494901 TTTCTAAGCAAATAGTATAAAAAACGCTTCAAGCAGGATGCTTTATAAGAAGAATTTTTGAAATC
66 TTTCTAAGCAAATAGTATAAAAAACGCTTCAAGCAGGATGCTTTATAAGAAGAATTTTTGAAATC
* *
14494966 GCTCCTACGTGGACGCGCTTTTGCTACAGTTGGTCCTGAAAAATAATTTCGAGTTGACGTTTCTG
131 GCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAATAATTTCGAGTTGACGTTTCTG
* *
14495031 AGCAAATAGTATAAAAAAACGCTTTAAGCAAGATGC-T-T-AGAAGAATTTTTG
196 AGAAAATAGTAT-AAAAAACGCTTCAAGCAAGATGCTTATCAGAAGAATTTTTG
* *
14495082 AAATCGCTCCCACATAGACGCACTTTTGCTACAGTAGGTCCTG-AAAAATAATTTCGAGTTGACG
1 AAATCGCTCCCACATGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGACG
* * *
14495146 TTTCTGAGCAAATAGTATAAAAAACGCTTTAAGCAGGATGCTTTATCAGAAG-ATTTTTGAAATC
66 TTTCTAAGCAAATAGTATAAAAAACGCTTCAAGCAGGATGCTTTATAAGAAGAATTTTTGAAATC
*
14495210 GCTCCCACGTGGACGCGCTTTTGCTATAGTAGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCT
131 GCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTG-AAAAATAATTTCGAGTTGACGTTTCT
* * *
14495275 GAGAAAATAGTATAAAAAACGCTTCAAGTAGGATGCTTTATCAGAATAATTTTTG
195 GAGAAAATAGTATAAAAAACGCTTCAAGCAAGATGC-TTATCAGAAGAATTTTTG
*
14495330 AAATCGCTCCCATATGGACGCGCTTTTGCTACAGTAG
1 AAATCGCTCCCACATGGACGCGCTTTTGCTACAGTAG
14495367 CATGTTTGGG
Statistics
Matches: 260, Mismatches: 20, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
244 67 0.26
245 107 0.41
246 39 0.15
247 1 0.00
248 46 0.18
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (248 bp):
AAATCGCTCCCACATGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGACG
TTTCTAAGCAAATAGTATAAAAAACGCTTCAAGCAGGATGCTTTATAAGAAGAATTTTTGAAATC
GCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAATAATTTCGAGTTGACGTTTCTG
AGAAAATAGTATAAAAAACGCTTCAAGCAAGATGCTTATCAGAAGAATTTTTG
Found at i:14495294 original size:124 final size:124
Alignment explanation
Indices: 14494836--14495366 Score: 829
Period size: 124 Copynumber: 4.3 Consensus size: 124
14494826 TTTATTAAGA
* * *
14494836 AAATCGCTCCCACGTGGACGCGTTTTTGATACAGTAGGTCCTGAAAAAATAATTTTGAGTTGACG
1 AAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTG-AAAAATAATTTCGAGTTGACG
* *
14494901 TTTCTAAGCAAATAGTATAAAAAACGCTTCAAGCAGGATGCTTTATAAGAAGAATTTTTG
65 TTTCTGAGCAAATAGTATAAAAAACGCTTCAAGCAGGATGCTTTATCAGAAGAATTTTTG
* *
14494961 AAATCGCTCCTACGTGGACGCGCTTTTGCTACAGTTGGTCCTGAAAAATAATTTCGAGTTGACGT
1 AAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAATAATTTCGAGTTGACGT
* *
14495026 TTCTGAGCAAATAGTATAAAAAAACGCTTTAAGCAAGATGC--T-T-AGAAGAATTTTTG
66 TTCTGAGCAAATAGTAT-AAAAAACGCTTCAAGCAGGATGCTTTATCAGAAGAATTTTTG
* * *
14495082 AAATCGCTCCCACATAGACGCACTTTTGCTACAGTAGGTCCTGAAAAATAATTTCGAGTTGACGT
1 AAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAATAATTTCGAGTTGACGT
*
14495147 TTCTGAGCAAATAGTATAAAAAACGCTTTAAGCAGGATGCTTTATCAGAAG-ATTTTTG
66 TTCTGAGCAAATAGTATAAAAAACGCTTCAAGCAGGATGCTTTATCAGAAGAATTTTTG
*
14495205 AAATCGCTCCCACGTGGACGCGCTTTTGCTATAGTAGGTCCTGAAAAAATAATTTCGAGTTGACG
1 AAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTG-AAAAATAATTTCGAGTTGACG
* * *
14495270 TTTCTGAGAAAATAGTATAAAAAACGCTTCAAGTAGGATGCTTTATCAGAATAATTTTTG
65 TTTCTGAGCAAATAGTATAAAAAACGCTTCAAGCAGGATGCTTTATCAGAAGAATTTTTG
**
14495330 AAATCGCTCCCATATGGACGCGCTTTTGCTACAGTAG
1 AAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAG
14495367 CATGTTTGGG
Statistics
Matches: 374, Mismatches: 25, Indels: 14
0.91 0.06 0.03
Matches are distributed among these distances:
120 22 0.06
121 90 0.24
122 2 0.01
123 48 0.13
124 111 0.30
125 101 0.27
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (124 bp):
AAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAATAATTTCGAGTTGACGT
TTCTGAGCAAATAGTATAAAAAACGCTTCAAGCAGGATGCTTTATCAGAAGAATTTTTG
Found at i:14497907 original size:18 final size:18
Alignment explanation
Indices: 14497866--14497908 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
14497856 GACTAGAAAA
* * *
14497866 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
*
14497884 AAGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
14497902 AGGATAC
1 AGGATAC
14497909 GCACCTGGCA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.47, C:0.09, G:0.26, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:14498437 original size:17 final size:18
Alignment explanation
Indices: 14498423--14498506 Score: 80
Period size: 19 Copynumber: 4.4 Consensus size: 18
14498413 ATAATCTTCG
14498423 AGGATATGCAATCTTAGA
1 AGGATATGCAATCTTAGA
*
14498441 TATGATATGCAATCTTAGA
1 -AGGATATGCAATCTTAGA
*
14498460 TATGATATATGCAATCTTAGA
1 -A-G-GATATGCAATCTTAGA
* *
14498481 TATGATATGTAATCTTAGA
1 -AGGATATGCAATCTTAGA
14498500 A-GATATG
1 AGGATATG
14498507 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
17 6 0.11
18 1 0.02
19 33 0.58
21 17 0.30
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.36
Consensus pattern (18 bp):
AGGATATGCAATCTTAGA
Found at i:14498449 original size:19 final size:19
Alignment explanation
Indices: 14498425--14498499 Score: 123
Period size: 19 Copynumber: 3.8 Consensus size: 19
14498415 AATCTTCGAG
14498425 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14498444 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14498463 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
14498484 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
14498500 AGATATGATT
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
19 34 0.64
21 19 0.36
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:14498471 original size:21 final size:21
Alignment explanation
Indices: 14498426--14498488 Score: 112
Period size: 21 Copynumber: 3.1 Consensus size: 21
14498416 ATCTTCGAGG
14498426 ATATGCAATCTTAGATATG--
1 ATATGCAATCTTAGATATGAT
14498445 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
14498466 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
14498487 AT
1 AT
14498489 GTAATCTTAG
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.45
21 23 0.55
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:14498518 original size:23 final size:22
Alignment explanation
Indices: 14498438--14498522 Score: 81
Period size: 21 Copynumber: 4.0 Consensus size: 22
14498428 ATGCAATCTT
*
14498438 AGATATGATATGCAATCTTAG-
1 AGATATGATATGTAATCTTAGA
* *
14498459 ATATGAT-ATATGCAATCTT---
1 AGAT-ATGATATGTAATCTTAGA
14498478 AGATATGATATGTAATCTTAGA
1 AGATATGATATGTAATCTTAGA
*
14498500 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGTAATCTTAGA
14498523 GATTTAATTT
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
18 2 0.04
19 14 0.26
21 15 0.28
22 10 0.19
23 13 0.24
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.39
Consensus pattern (22 bp):
AGATATGATATGTAATCTTAGA
Found at i:14498532 original size:22 final size:23
Alignment explanation
Indices: 14498488--14498532 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
14498478 AGATATGATA
*
14498488 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
14498511 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
14498533 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:14498730 original size:19 final size:21
Alignment explanation
Indices: 14498706--14498744 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
14498696 TGTTTTCTTT
*
14498706 TTTTTTTCTT-TTT-CGATTA
1 TTTTTTACTTATTTACGATTA
14498725 TTTTTTACTTATTTACGATT
1 TTTTTTACTTATTTACGATT
14498745 TAGAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.69
Consensus pattern (21 bp):
TTTTTTACTTATTTACGATTA
Found at i:14498976 original size:3 final size:3
Alignment explanation
Indices: 14498949--14498992 Score: 56
Period size: 3 Copynumber: 15.0 Consensus size: 3
14498939 GGTTTTTAAT
*
14498949 TTA TT- TTA TTAA TT- TTA TCA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14498993 CTATATATAC
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
2 4 0.11
3 29 0.81
4 3 0.08
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:14499047 original size:46 final size:45
Alignment explanation
Indices: 14498994--14499143 Score: 134
Period size: 46 Copynumber: 3.3 Consensus size: 45
14498984 TTATTATTAC
*
14498994 TATATATA-CATACGCATTTTTTTATAATAATATACATACGCATTTT
1 TATATATAGCATACGCATTTTTTTAT-ATAATATA-ATATGCATTTT
* **
14499040 TATATATAG--TATGCAGGCGTTTTTATATAATAT-ATATGCATTTT
1 TATATATAGCATACGCA--TTTTTTTATATAATATAATATGCATTTT
* *
14499084 TTTATATAGTATGCACGCATTTTTTTATATAATATATATATGC-TTTT
1 TATATATAGCAT--ACGCATTTTTTTATATAATATA-ATATGCATTTT
14499131 T-T-TATAGCATACG
1 TATATATAGCATACG
14499144 TCTACCTATA
Statistics
Matches: 86, Mismatches: 9, Indels: 21
0.74 0.08 0.18
Matches are distributed among these distances:
43 3 0.03
44 18 0.21
45 12 0.14
46 31 0.36
47 12 0.14
48 10 0.12
ACGTcount: A:0.33, C:0.10, G:0.09, T:0.48
Consensus pattern (45 bp):
TATATATAGCATACGCATTTTTTTATATAATATAATATGCATTTT
Found at i:14499066 original size:23 final size:23
Alignment explanation
Indices: 14499031--14499114 Score: 93
Period size: 23 Copynumber: 3.7 Consensus size: 23
14499021 TAATATACAT
14499031 ACGCATTTTTATATATAGTATGC
1 ACGCATTTTTATATATAGTATGC
* *
14499054 AGGCGTTTTTATATAATA-TAT--
1 ACGCATTTTTATAT-ATAGTATGC
* *
14499075 ATGCATTTTTTTATATAGTATGC
1 ACGCATTTTTATATATAGTATGC
*
14499098 ACGCATTTTTTTATATA
1 ACGCATTTTTATATATA
14499115 ATATATATAT
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
20 3 0.06
21 14 0.27
23 31 0.61
24 3 0.06
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.49
Consensus pattern (23 bp):
ACGCATTTTTATATATAGTATGC
Found at i:14499082 original size:44 final size:45
Alignment explanation
Indices: 14499012--14499122 Score: 143
Period size: 44 Copynumber: 2.4 Consensus size: 45
14499002 CATACGCATT
* *
14499012 TTTTTATAATAATATACATACGCATTTTTATATATAGTATGCAGGC-G
1 TTTTTAT-ATAATAT--ATATGCATTTTTATATATAGTATGCACGCAG
* *
14499059 TTTTTATATAATATATATGCATTTTTTTATATAGTATGCACGCATT
1 TTTTTATATAATATATATGCATTTTTATATATAGTATGCACGCA-G
14499105 TTTTTATATAATATATAT
1 TTTTTATATAATATATAT
14499123 ATGCTTTTTT
Statistics
Matches: 58, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
44 26 0.45
46 25 0.43
47 7 0.12
ACGTcount: A:0.33, C:0.08, G:0.09, T:0.50
Consensus pattern (45 bp):
TTTTTATATAATATATATGCATTTTTATATATAGTATGCACGCAG
Found at i:14499130 original size:23 final size:22
Alignment explanation
Indices: 14498994--14499136 Score: 76
Period size: 23 Copynumber: 6.2 Consensus size: 22
14498984 TTATTATTAC
*
14498994 TATATATACATACGCATTTTTTTA
1 TATATATATATACGC--TTTTTTA
* *
14499018 TAATAATATACATACGCATTTTTA
1 T-AT-ATATATATACGCTTTTTTA
** * *
14499042 TATATAGTATGCAGGCGTTTTTA
1 TATATA-TATATACGCTTTTTTA
*
14499065 TATA-ATATATATGCATTTTTT-
1 TATATATATATACGC-TTTTTTA
**
14499086 TATATAGTATGCACGCATTTTTTTA
1 TATATA-TATATACGC--TTTTTTA
*
14499111 TATAATATATATATGCTTTTTT-
1 TAT-ATATATATACGCTTTTTTA
14499133 TATA
1 TATA
14499137 GCATACGTCT
Statistics
Matches: 93, Mismatches: 17, Indels: 21
0.71 0.13 0.16
Matches are distributed among these distances:
21 11 0.12
22 13 0.14
23 29 0.31
24 14 0.15
25 11 0.12
26 15 0.16
ACGTcount: A:0.33, C:0.09, G:0.08, T:0.50
Consensus pattern (22 bp):
TATATATATATACGCTTTTTTA
Found at i:14499380 original size:32 final size:33
Alignment explanation
Indices: 14499334--14499395 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 33
14499324 ATGATTTACC
* * *
14499334 AATATATACTTATAC-ATCTTTTTTATTTTGTA
1 AATATATACATATACAAACTTTTCTATTTTGTA
14499366 AATATATACATATACAAACTTTTCTATTTT
1 AATATATACATATACAAACTTTTCTATTTT
14499396 TATCTTATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 14 0.54
33 12 0.46
ACGTcount: A:0.35, C:0.11, G:0.02, T:0.52
Consensus pattern (33 bp):
AATATATACATATACAAACTTTTCTATTTTGTA
Found at i:14499634 original size:19 final size:20
Alignment explanation
Indices: 14499593--14499634 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
14499583 ATTTCTATGC
* *
14499593 CATTGTAATATTTATTATTG
1 CATTGTAATATTTAATATAG
*
14499613 CATTGT-ATATTTAATGTAG
1 CATTGTAATATTTAATATAG
14499632 CAT
1 CAT
14499635 CACATCATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.31, C:0.07, G:0.12, T:0.50
Consensus pattern (20 bp):
CATTGTAATATTTAATATAG
Found at i:14505570 original size:44 final size:44
Alignment explanation
Indices: 14505387--14505571 Score: 119
Period size: 44 Copynumber: 4.2 Consensus size: 44
14505377 AAGATCATAG
* * *
14505387 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAGGACGATAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACGACAA
* * * *
14505431 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACCAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGTAGATTGAAGACGA-CAA
** * * * * * * * *
14505475 GCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTG-TAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGA-CGACAA
* *
14505519 ATTTTATCTCCCTAAGCAGTAGTGGAGAAGATTGAAGACGACAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACGACAA
14505563 ATCTTATCT
1 ATCTTATCT
14505572 TTCCAAGATA
Statistics
Matches: 97, Mismatches: 34, Indels: 20
0.64 0.23 0.13
Matches are distributed among these distances:
42 4 0.04
43 9 0.09
44 76 0.78
45 6 0.06
46 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACGACAA
Found at i:14505592 original size:132 final size:132
Alignment explanation
Indices: 14505342--14505753 Score: 655
Period size: 132 Copynumber: 3.1 Consensus size: 132
14505332 GTGAAACACT
* * **
14505342 AAGCCTTGTCT-CTTGAGCAACAGCGGAGTAGGTTGAAGATCATAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * *
14505406 TAGTGGAGTAGATCGAGGACGATAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
66 TAGTGGAGAAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
14505471 CC
131 CC
*
14505473 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATTTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* *
14505538 TAGTGGAGAAGATTGAAGACGACAAATCTTATCTTTCCAAGATAATGGGAAGCAGATTTAAGCCA
66 TAGTGGAGAAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
*
14505603 AC
131 CC
*
14505605 AAGCATTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * * * *
14505670 TAATAGAGCAGATCGAAGACGGCAAATCATATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
66 TAGTGGAGAAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
14505735 CC
131 CC
*
14505737 AAGCCTTATCTCCCTGA
1 AAGCCTTGTCTCCCTGA
14505754 AGTTGCAGTG
Statistics
Matches: 257, Mismatches: 23, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
131 11 0.04
132 246 0.96
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (132 bp):
AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
TAGTGGAGAAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
CC
Found at i:14505881 original size:44 final size:43
Alignment explanation
Indices: 14505736--14506763 Score: 393
Period size: 44 Copynumber: 23.7 Consensus size: 43
14505726 TTTAAGCCAC
* * * *
14505736 CAAGCCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAA-AAC
1 CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG
** * * * * * *
14505778 CTTGGATCTTATCTCTCTGAAGTTGCAG-AGAGTAGA-T-CGCAT
1 C-AAG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG
* *
14505820 CTAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAG
1 CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAG
* *
14505864 CAAGTCTTATC-CTCTTGAAGTTGCAGT-GAGGCAGACTGAAGATG
1 CAAGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGAAG
* * * * **
14505908 ACAAATCTTATCTCTCT-AAGGTTGCAGTGGAGTAGATTAAAGCCG
1 -CAAGTCTTATCTCCCTGAA-GTTGCAGTGGAGCAGACT-AAGAAG
* * * *
14505953 ACAA-TCTTATCTCCCTGGAGTTGCAGTGGAGCGGATTAA-AAT
1 -CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG
* * * * * *
14505995 CACAGATCTTATCTCTCTGAAGTTGCAG-AGAGTAGA-T-CGTAT
1 CA-AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG
* * *
14506037 CTAA-TCTTATCTCCCTGAAGTTACAATGGAGTAGACTAAGCAAG
1 C-AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAG
* * *
14506081 CAAGTCTTGTC-CTCCTGAGGTTGCAGT-GAGGCAGACTGAAGATGG
1 CAAGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGA-AG
* * *
14506126 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG-GTTA-AAG
1 CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG
* * * ** * *
14506167 TCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAA-AAC
1 -C-A-AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG
** * * * * *
14506212 CTTGAA-TCTTATCTATCTGAAGTTACAG-AGAGCAGA-T-CGCAT
1 C---AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG
*
14506254 CAAGTCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAGATG
1 CAAGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGAAG
* * * *
14506298 TTAAATCTTATCTCCCTGAAGTTGCAGTGGAGCA-AGTTA-AAG
1 -CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG
* * * * ** * *
14506340 CAGATAATCCTATCTTCCTGAAGTTGTAGTGGAGTGGATTAA-AAC
1 C--A-AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG
* * * * * *
14506385 CTTAGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CGCAT
1 C-AAG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG
* * * *
14506427 CTAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAAACTAAGTAAT
1 CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAG
*
14506471 CAAGTCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAGATGG
1 CAAGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGA-AG
* * * *
14506516 CGAA-TCTTATCTCCCTGAAGTTGCAGTGGGGCATACTAAATAAA
1 C-AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGAAG
* * * * * * * *
14506560 CAAATCCTGTCTCCTTGAAGTTGTAGTGGAGCGGATTAA-AAC
1 CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG
* * * * * * *
14506602 CACAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGA-TCA-CAT
1 CA-AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG
*
14506645 CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTCAAGAAAG
1 CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAG-AAG
** * * * * * *
14506690 CAAACCTTATCCCCCTGAAATTGCAGTGGGGCATACTAAATAAA
1 CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGAAG
* * * *
14506734 CAAATCCTGTCTCCCT-AAGTTGTAGTGGAG
1 CAAGTCTTATCTCCCTGAAGTTGCAGTGGAG
14506764 TGGATTAGAG
Statistics
Matches: 739, Mismatches: 175, Indels: 143
0.70 0.17 0.14
Matches are distributed among these distances:
39 2 0.00
40 79 0.11
41 58 0.08
42 31 0.04
43 65 0.09
44 318 0.43
45 171 0.23
46 15 0.02
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (43 bp):
CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG
Found at i:14506116 original size:217 final size:215
Alignment explanation
Indices: 14505741--14506326 Score: 743
Period size: 217 Copynumber: 2.7 Consensus size: 215
14505731 GCCACCAAGC
*
14505741 CTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACC--AGATCTTATCTCTCTGAAGTTGCAG
* * * * *
14505806 AGAGTAGATCGCATCTAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCT
64 AGAGTAGATCGCATCTAATCTTATCTCCCTGAAGTTACAATGGAGCAGACTAAGCAAGCAAGTCT
* *
14505871 TATCCTCTTGAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTTATCTCTCT-AAGGTTGCAG
129 TATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTTATCTCCCTGAA-GTTGCAG
*
14505935 TGGAGTAGATTAAAGCCGACAAT
193 TGGAGCAGATTAAAGCCGACAAT
*
14505958 CTTATCTCCCTGGAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAA-C-CAGATCTTATCTCTCTGAAGTTGCAG
* *
14506023 AGAGTAGATCGTATCTAATCTTATCTCCCTGAAGTTACAATGGAGTAGACTAAGCAAGCAAGTCT
64 AGAGTAGATCGCATCTAATCTTATCTCCCTGAAGTTACAATGGAGCAGACTAAGCAAGCAAGTCT
* * *
14506088 TGTCCTCCTGAGGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGT
129 TATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTTATCTCCCTGAAGTTGCAGT
* * *
14506153 GGAGCAGGTTAAAGTCGATAAT
194 GGAGCAGATTAAAGCCGACAAT
* * * * * *
14506175 CCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGAATCTTATCTATCTGAAGTTACAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACC-AG-ATCTTATCTCTCTGAAGTTGCAG
* * * * *
14506240 AGAGCAGATCGCATC-AAGTCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAG-ATGTTA
64 AGAGTAGATCGCATCTAA-TCTTATCTC-CCTGAAGTTACAATGGA-GCAGACT-AAGCAAG-CA
*
14506301 AATCTTAT-CTCCCTGAAGTTGCAGTG
124 AGTCTTATCCT-CCTGAAGTTGCAGTG
14506327 GAGCAAGTTA
Statistics
Matches: 323, Mismatches: 35, Indels: 21
0.85 0.09 0.06
Matches are distributed among these distances:
215 1 0.00
216 7 0.02
217 287 0.89
218 27 0.08
219 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (215 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCAGATCTTATCTCTCTGAAGTTGCAGAG
AGTAGATCGCATCTAATCTTATCTCCCTGAAGTTACAATGGAGCAGACTAAGCAAGCAAGTCTTA
TCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTTATCTCCCTGAAGTTGCAGTGG
AGCAGATTAAAGCCGACAAT
Found at i:14506134 original size:173 final size:173
Alignment explanation
Indices: 14505955--14506454 Score: 547
Period size: 173 Copynumber: 2.9 Consensus size: 173
14505945 TAAAGCCGAC
* *
14505955 AATCTTATCTCCCTGGAGTTGCAGTGGAGC-GGATTAAAATC-ACAGATCTTATC-TCTCTGAAG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGG-TTAAAATCGACA-ATCCTATCTTC-CTGAAG
*** * * *
14506017 TTGCAG-AGAGTAGA-TCGTATC-T-AATCTTATCTCCCTGAAGTTACA-ATGGAGTAGACTAAG
63 TTGCAGTAGAGTAGATTAAAACCTTGAATCTTATCTACCTGAAGTTACAGA--GAGCAGA-T-AG
* *
14506077 CAAGCAAGTCTTGTCCTCCTGAGGTTGCAGTGAGGCAGACTGAAGATGGCA
124 C-AGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCA
* *
14506128 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGTCGATAATCCTATCTTCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAATCGACAATCCTATCTTCCTGAAGTTG
* * * * *
14506193 CAGTGGAGTGGATTAAAACCTTGAATCTTATCTATCTGAAGTTACAGAGAGCAGATCGCATCAAG
66 CAGTAGAGTAGATTAAAACCTTGAATCTTATCTACCTGAAGTTACAGAGAGCAGATAGCAGCAAG
**
14506258 TCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGTTA
131 TCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCA
* * *
14506301 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTT-AAAGCAGATAATCCTATCTTCCTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAATC-GACAATCCTATCTTCCTGAAGTT
* * * * * *
14506365 GTAGTGGAGTGGATTAAAACCTT-AGATCTTATCT-CTCTGAAGTTGCAGAGAGCAGATCGCATC
65 GCAGTAGAGTAGATTAAAACCTTGA-ATCTTATCTAC-CTGAAGTTACAGAGAGCAGATAGCAGC
*
14506428 TAGTCTTAT-CTCCTTGAAGTTGCAGTG
128 AAGTCTTATCCTCC-TGAAGTTGCAGTG
14506455 GAGCAAACTA
Statistics
Matches: 289, Mismatches: 26, Indels: 24
0.85 0.08 0.07
Matches are distributed among these distances:
172 8 0.03
173 234 0.81
174 14 0.05
175 4 0.01
176 7 0.02
177 21 0.07
178 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (173 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAATCGACAATCCTATCTTCCTGAAGTTG
CAGTAGAGTAGATTAAAACCTTGAATCTTATCTACCTGAAGTTACAGAGAGCAGATAGCAGCAAG
TCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCA
Found at i:14506281 original size:390 final size:391
Alignment explanation
Indices: 14505864--14506770 Score: 1136
Period size: 390 Copynumber: 2.3 Consensus size: 391
14505854 ACTAAGTAAG
* *
14505864 CAAGTCTTATCCTCTTGAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTTATCTCTCT-AAG
1 CAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTTATCTCCCTGAA-
* * * *
14505928 GTTGCAGTGGAG-TAGATTAAAGCCGACAATCTTATCTCCCTGGAGTTGCAGTGGAGCGGATTAA
65 GTTGCAGTGGAGCAAG-TTAAAGCAGACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAA
* * *
14505992 AATCACAGATCTTATCTCTCTGAAGTTGCAGAGAGTAGATCGTATCTAATCTTATCTCCCTGAAG
129 AACCACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAATCTTATCTCCCTGAAG
* * * *
14506057 TTACAATGGAGTAGACTAAGCAAGCAAGTCTTGTCCTCCTGAGGTTGCAGTGAGGCAGACTGAAG
194 TTACAATGGAGCAAACTAAGCAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAG
** ** *
14506122 ATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGTCGA-TAATCCTATCTTCC-
259 ATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAA-TAAACAAATCCTATC-TCCT
* **
14506185 TGAAGTTGCAGTGGAGTGGATTAAAACC-TTGAATCTTATCTATCTGAAGTTACAG-AGAGCAGA
322 TGAAGTTGCAGTGGAGCGGATTAAAACCACAG-ATCTTATCTATCTGAAGTTACAGTAGAGCAGA
*
14506248 TCGCAT
386 TCACAT
**
14506254 CAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGTTAAATCTTATCTCCCTGAAG
1 CAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTTATCTCCCTGAAG
* * * *
14506319 TTGCAGTGGAGCAAGTTAAAGCAGATAATCCTATCTTCCTGAAGTTGTAGTGGAGTGGATTAAAA
66 TTGCAGTGGAGCAAGTTAAAGCAGACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAA
** * *
14506384 CCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCTTGAAGTT
131 CCACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAATCTTATCTCCCTGAAGTT
* * * *
14506449 GCAGTGGAGCAAACTAAGTAATCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGAT
196 ACAATGGAGCAAACTAAGCAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGAT
* * * *
14506514 GGCGAATCTTATCTCCCTGAAGTTGCAGTGGGGCATACTAAATAAACAAATCCTGTCTCCTTGAA
261 GGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAACAAATCCTATCTCCTTGAA
* * *
14506579 GTTGTAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACA
326 GTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTATCTGAAGTTACAGTAGAGCAGATCACA
14506644 T
391 T
* * * * *
14506645 CAAGTCTTAT-CTCCCTGAAGTTGCAGTG-GAGCAAACTCAAGA-AAGCAAACCTTATCCCCCTG
1 CAAGTCTTATCCT-CCTGAAGTTGCAGTGAG-GCAGACTGAAGATGA-CAAATCTTATCTCCCTG
* * * * * * * *
14506707 AAATTGCAGTGGGGCATA-CTAAA-TAAACAAATCCTGTCTCCCT-AAGTTGTAGTGGAGTGGAT
63 AAGTTGCAGTGGAGCA-AGTTAAAGCAGAC-AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGAT
14506769 TA
126 TA
14506771 GAGTGATGGA
Statistics
Matches: 448, Mismatches: 58, Indels: 22
0.85 0.11 0.04
Matches are distributed among these distances:
389 5 0.01
390 346 0.77
391 96 0.21
392 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (391 bp):
CAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTTATCTCCCTGAAG
TTGCAGTGGAGCAAGTTAAAGCAGACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAA
CCACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAATCTTATCTCCCTGAAGTT
ACAATGGAGCAAACTAAGCAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGAT
GGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAACAAATCCTATCTCCTTGAA
GTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTATCTGAAGTTACAGTAGAGCAGATCACA
T
Found at i:14506362 original size:217 final size:212
Alignment explanation
Indices: 14505741--14506548 Score: 716
Period size: 217 Copynumber: 3.7 Consensus size: 212
14505731 GCCACCAAGC
*
14505741 CTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACC-TGAATCTTATCTCTCTGAAGTTGCAG
* * * *
14505806 AGAGTAGATCGCATCTAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCT
65 AGAGCAGATCGCATCAAGTCTTATCTCC-TGAAGTTGCAGTGGAGCAGACTAAGCAAGCAAATCT
*
14505871 TATCCTCTTGAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTTATC-TCTCT-AAGGTTGCA
129 TATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATG--AAATCTTATCTTC-CTGAA-GTTGCA
* * *
14505934 GTGGAGTAGATTAAAGCCGACAAT
190 GTGGAG-AGGTTAAAGACGATAAT
* *
14505958 CTTATCTCCCTGGAGTTGCAGTGGAGCGGATTAAAATCACAG-ATCTTATCTCTCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAA-C-CTGAATCTTATCTCTCTGAAGTTGCA
* * * * * *
14506022 GAGAGTAGATCGTATCTAA-TCTTATCTCCCTGAAGTTACAATGGAGTAGACTAAGCAAGCAAGT
64 GAGAGCAGATCGCATC-AAGTCTTATCT-CCTGAAGTTGCAGTGGAGCAGACTAAGCAAGCAAAT
* * *
14506086 CTTGTCCTCCTGAGGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCA
127 CTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGAT-G-AAATCTTATCTTCCTGAAGTTGCA
*
14506151 GTGGAGCAGGTTAAAGTCGATAAT
190 GTGGAG-AGGTTAAAGACGATAAT
* * * * *
14506175 CCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGAATCTTATCTATCTGAAGTTACAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACC-TGAATCTTATCTCTCTGAAGTTGCAG
* *
14506240 AGAGCAGATCGCATCAAGTCTTATCCTCCTGAAGTTGCAGT-GAGGCAGACTGAAG-ATGTTAAA
65 AGAGCAGATCGCATCAAGTCTTAT-CTCCTGAAGTTGCAGTGGA-GCAGACT-AAGCAAG-CAAA
* * *
14506303 TCTTAT-CTCCCTGAAGTTGCAGTG-GAGCA-AGTTAAAGCA-GATAATCCTATCTTCCTGAAGT
126 TCTTATCCT-CCTGAAGTTGCAGTGAG-GCAGA-CTGAAG-ATGA-AATCTTATCTTCCTGAAGT
* * **
14506364 TGTAGTGGAGTGGATTAAA-ACCTTAGAT
186 TGCAGTGGAGAGG-TTAAAGACGATA-AT
* * * *** * *
14506392 CTTATCTCTCTGAAGTTGCAG-AGAGCAGA-TCGCATCT-AGTCTTATCTC-CTTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTGAATCTTATCTCTC-TGAAGTTGCAG
* * * * *
14506453 TGGAGCAAACTAAGTAATCAAGTCTTATCCTCCTGAAGTTGCAGT-GAGGCAGACTGAAG-ATGG
65 -AGAGCAGA-T-CG-CATCAAGTCTTAT-CTCCTGAAGTTGCAGTGGA-GCAGACT-AAGCA-AG
* *
14506516 CGAATCTTAT-CTCCCTGAAGTTGCAGTGGGGCA
122 CAAATCTTATCCT-CCTGAAGTTGCAGTGAGGCA
14506549 TACTAAATAA
Statistics
Matches: 501, Mismatches: 62, Indels: 56
0.81 0.10 0.09
Matches are distributed among these distances:
212 1 0.00
213 19 0.04
214 7 0.01
215 5 0.01
216 18 0.04
217 405 0.81
218 44 0.09
219 2 0.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (212 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTGAATCTTATCTCTCTGAAGTTGCAGA
GAGCAGATCGCATCAAGTCTTATCTCCTGAAGTTGCAGTGGAGCAGACTAAGCAAGCAAATCTTA
TCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGAAATCTTATCTTCCTGAAGTTGCAGTGGAG
AGGTTAAAGACGATAAT
Found at i:14506535 original size:173 final size:172
Alignment explanation
Indices: 14506081--14506544 Score: 561
Period size: 173 Copynumber: 2.7 Consensus size: 172
14506071 ACTAAGCAAG
* * * **
14506081 CAAGTCTTGTCCTCCTGAGGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAG
1 CAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAAACTGAAGATATCAAATCTTATCTCCCTGAAG
** *
14506146 TTGCAGTGGAGCAGGTTAAAGTC-GATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAA
66 TTGCAGTGGAGCAACTGAAAG-CAGA-AATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAA
14506210 ACCTTGAATCTTATCTATCTGAAGTTACAGAGAGCAGATCGCAT
129 ACCTTGAATCTTATCTATCTGAAGTTACAGAGAGCAGATCGCAT
* * *
14506254 CAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGTTAAATCTTATCTCCCTGAAG
1 CAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAAACTGAAGATATCAAATCTTATCTCCCTGAAG
* * *
14506319 TTGCAGTGGAGCAAGTTAAAGCAGATAATCCTATCTTCCTGAAGTTGTAGTGGAGTGGATTAAAA
66 TTGCAGTGGAGCAACTGAAAGCAGA-AATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAA
* *
14506384 CCTT-AGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCAT
130 CCTTGA-ATCTTATCTATCTGAAGTTACAGAGAGCAGATCGCAT
* *
14506427 CTAGTCTTAT-CTCCTTGAAGTTGCAGTG-GAGCAAACT-AAG-TAATCAAGTCTTATC-CTCCT
1 CAAGTCTTATCCTCC-TGAAGTTGCAGTGAG-GCAAACTGAAGAT-ATCAAATCTTATCTC-CCT
* *
14506487 GAAGTTGCAGT-GAGGCAGACTGAAGATGGC-G-AATCTTATCTCCCTGAAGTTGCAGTGG
62 GAAGTTGCAGTGGA-GCA-ACTGAA-A--GCAGAAATCCTATCTTCCTGAAGTTGCAGTGG
14506545 GGCATACTAA
Statistics
Matches: 262, Mismatches: 18, Indels: 22
0.87 0.06 0.07
Matches are distributed among these distances:
171 4 0.02
172 37 0.14
173 217 0.83
174 1 0.00
175 1 0.00
176 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (172 bp):
CAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAAACTGAAGATATCAAATCTTATCTCCCTGAAG
TTGCAGTGGAGCAACTGAAAGCAGAAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAAC
CTTGAATCTTATCTATCTGAAGTTACAGAGAGCAGATCGCAT
Found at i:14506581 original size:217 final size:219
Alignment explanation
Indices: 14506252--14506722 Score: 664
Period size: 217 Copynumber: 2.2 Consensus size: 219
14506242 AGCAGATCGC
**
14506252 ATCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGTTAAATCTTATCTCCCTGA
1 ATCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGA
* * * *
14506317 AGTTGCAGTGGAGCAAGTTAAAGCAGATAATCCTATCTTCCTGAAGTTGTAGTGGAGTGGATTAA
66 AGTTGCAGTGGAGCAAGCTAAAGCAAAAAATCCTATCTTCCTGAAGTTGTAGTGGAGCGGATTAA
** * * * *
14506382 AACCTTAGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGATCGCATCTAGTCTTATCTCCTTGAA
131 AACCACAGATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCACATCAAGTCTTATCTCCCTGAA
*
14506446 GTTGCAGTGGAGCAAACT-AAGTA
196 GTTGCAGTGGAGCAAACTCAAGAA
*
14506469 ATCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCGAATCTTATCTCCCTGA
1 ATCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGA
* * *
14506534 AGTTGCAGTGGGGCATA-CTAAA-TAAACAAATCCTGTC-TCCTTGAAGTTGTAGTGGAGCGGAT
66 AGTTGCAGTGGAGCA-AGCTAAAGCAAA-AAATCCTATCTTCC-TGAAGTTGTAGTGGAGCGGAT
*
14506596 TAAAACCACAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAAGTCTTATCTCCCT
128 TAAAACCACAGATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCACATCAAGTCTTATCTCCCT
14506661 GAAGTTGCAGTGGAGCAAACTCAAGAA
193 GAAGTTGCAGTGGAGCAAACTCAAGAA
* ** * * *
14506688 AGCAAACCTTATCCCCCTGAAATTGCAGTGGGGCA
1 ATCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCA
14506723 TACTAAATAA
Statistics
Matches: 225, Mismatches: 24, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
216 5 0.02
217 139 0.62
218 48 0.21
219 33 0.15
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (219 bp):
ATCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGA
AGTTGCAGTGGAGCAAGCTAAAGCAAAAAATCCTATCTTCCTGAAGTTGTAGTGGAGCGGATTAA
AACCACAGATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCACATCAAGTCTTATCTCCCTGAA
GTTGCAGTGGAGCAAACTCAAGAA
Found at i:14507114 original size:17 final size:17
Alignment explanation
Indices: 14507062--14507114 Score: 61
Period size: 19 Copynumber: 3.0 Consensus size: 17
14507052 TATGGAAACA
* *
14507062 TAATCTTCGAGGATATG
1 TAATCTTAGAAGATATG
*
14507079 CAATCTTAGATATGATATG
1 TAATCTTAGA-A-GATATG
14507098 TAATCTTAGAAGATATG
1 TAATCTTAGAAGATATG
14507115 ATTTTGTAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
17 14 0.47
18 1 0.03
19 15 0.50
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (17 bp):
TAATCTTAGAAGATATG
Found at i:14507114 original size:22 final size:23
Alignment explanation
Indices: 14507086--14507130 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
14507076 ATGCAATCTT
14507086 AGATATGA-TATGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
*
14507108 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
14507131 GATTTAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.40
Consensus pattern (23 bp):
AGATATGATTATGTAATCTTAGA
Found at i:14507140 original size:22 final size:23
Alignment explanation
Indices: 14507096--14507140 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
14507086 AGATATGATA
*
14507096 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
14507119 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
14507141 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:14507337 original size:20 final size:22
Alignment explanation
Indices: 14507312--14507352 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
14507302 GGCTTACTGT
*
14507312 TTTTTTTTCTT-TTT-CGATTA
1 TTTTTTTACTTATTTACGATTA
14507332 TTTTTTTACTTATTTACGATT
1 TTTTTTTACTTATTTACGATT
14507353 TTAAAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 10 0.56
21 3 0.17
22 5 0.28
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.71
Consensus pattern (22 bp):
TTTTTTTACTTATTTACGATTA
Found at i:14507689 original size:45 final size:46
Alignment explanation
Indices: 14507607--14507738 Score: 189
Period size: 45 Copynumber: 2.9 Consensus size: 46
14507597 ATATACATAT
* *
14507607 GCATTTTTTTATAATAATATATACGCATTTTTATATATAGTATGCAG
1 GCATTTTTTTATAATAATATATATGCATTTTT-TATATAGTATGCAC
* *
14507654 GCGTTTTTATATAAT-ATATATATGCATTTTTTATATAGTATGCAC
1 GCATTTTTTTATAATAATATATATGCATTTTTTATATAGTATGCAC
*
14507699 GCATTTTTTTAT-ATAATATATATGC-TTTTTTTTATAGTAT
1 GCATTTTTTTATAATAATATATATGCATTTTTTATATAGTAT
14507739 ACGTCTACCT
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
44 16 0.21
45 33 0.43
46 15 0.19
47 13 0.17
ACGTcount: A:0.31, C:0.08, G:0.10, T:0.52
Consensus pattern (46 bp):
GCATTTTTTTATAATAATATATATGCATTTTTTATATAGTATGCAC
Found at i:14507728 original size:23 final size:23
Alignment explanation
Indices: 14507594--14507734 Score: 117
Period size: 23 Copynumber: 6.2 Consensus size: 23
14507584 TTATTATTAC
*
14507594 TATAT-ATACATATGCATTTTTT
1 TATATAATATATATGCATTTTTT
* *
14507616 TATAATAATATATACGCATTTTTA
1 TAT-ATAATATATATGCATTTTTT
* ** * * *
14507640 TATATAGTATGCAGGCGTTTTTA
1 TATATAATATATATGCATTTTTT
14507663 TATA-ATATATATATGCA-TTTTT
1 TATATA-ATATATATGCATTTTTT
* ** *
14507685 TATATAGTATGCACGCATTTTTT
1 TATATAATATATATGCATTTTTT
*
14507708 TATATAATATATATGCTTTTTTT
1 TATATAATATATATGCATTTTTT
14507731 TATA
1 TATA
14507735 GTATACGTCT
Statistics
Matches: 91, Mismatches: 23, Indels: 9
0.74 0.19 0.07
Matches are distributed among these distances:
22 19 0.21
23 55 0.60
24 17 0.19
ACGTcount: A:0.33, C:0.08, G:0.09, T:0.51
Consensus pattern (23 bp):
TATATAATATATATGCATTTTTT
Found at i:14507976 original size:32 final size:33
Alignment explanation
Indices: 14507930--14507991 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 33
14507920 ATGATTTACC
* * *
14507930 AATATATACTTATAC-ATCTTTTTTATTTTGTA
1 AATATATACATATACAAACTTTTCTATTTTGTA
14507962 AATATATACATATACAAACTTTTCTATTTT
1 AATATATACATATACAAACTTTTCTATTTT
14507992 TATCTTATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 14 0.54
33 12 0.46
ACGTcount: A:0.35, C:0.11, G:0.02, T:0.52
Consensus pattern (33 bp):
AATATATACATATACAAACTTTTCTATTTTGTA
Found at i:14508230 original size:19 final size:20
Alignment explanation
Indices: 14508189--14508230 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
14508179 ATTTCTATGC
* *
14508189 CATTGTAATATTTATTATTG
1 CATTGTAATATTTAATATAG
*
14508209 CATTGT-ATATTTAATGTAG
1 CATTGTAATATTTAATATAG
14508228 CAT
1 CAT
14508231 CACATCATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.31, C:0.07, G:0.12, T:0.50
Consensus pattern (20 bp):
CATTGTAATATTTAATATAG
Found at i:14509229 original size:20 final size:20
Alignment explanation
Indices: 14509192--14509229 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
14509182 ATTATTTTTA
*
14509192 AAAATCTATGTAATAATTGT
1 AAAATCTATATAATAATTGT
14509212 AAAATCTAATATAA-AATT
1 AAAATCT-ATATAATAATT
14509230 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.37
Consensus pattern (20 bp):
AAAATCTATATAATAATTGT
Found at i:14510229 original size:51 final size:51
Alignment explanation
Indices: 14510168--14510265 Score: 144
Period size: 51 Copynumber: 1.9 Consensus size: 51
14510158 AAATAATTAA
14510168 AAATAGGGATTTAAGAGAAATTTAAGAA-GAAATTGAGAGCAAATTGAAATT
1 AAATAGGGATTTAAGAGAAATTT-AGAAGGAAATTGAGAGCAAATTGAAATT
* * * *
14510219 AAATATGGATTTGAGAGAAATTTGGAAGGAAATTGAGAGCAATTTGA
1 AAATAGGGATTTAAGAGAAATTTAGAAGGAAATTGAGAGCAAATTGA
14510266 GAGGAAATTG
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
50 3 0.07
51 39 0.93
ACGTcount: A:0.47, C:0.02, G:0.24, T:0.27
Consensus pattern (51 bp):
AAATAGGGATTTAAGAGAAATTTAGAAGGAAATTGAGAGCAAATTGAAATT
Found at i:14510241 original size:11 final size:12
Alignment explanation
Indices: 14510227--14510278 Score: 51
Period size: 11 Copynumber: 4.7 Consensus size: 12
14510217 TTAAATATGG
14510227 ATTTGAGA-GAA
1 ATTTGAGAGGAA
14510238 ATTTG-GAAGGAA
1 ATTTGAG-AGGAA
*
14510250 A-TTGAGA-GCA
1 ATTTGAGAGGAA
14510260 ATTTGAGAGGAA
1 ATTTGAGAGGAA
14510272 A-TTGAGA
1 ATTTGAGA
14510279 AATGATTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
10 4 0.12
11 22 0.65
12 8 0.24
ACGTcount: A:0.42, C:0.02, G:0.31, T:0.25
Consensus pattern (12 bp):
ATTTGAGAGGAA
Found at i:14510254 original size:22 final size:22
Alignment explanation
Indices: 14510229--14510278 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
14510219 AAATATGGAT
14510229 TTGAGAGAAATTTG-GAAGGAAA
1 TTGAGAGAAATTTGAG-AGGAAA
*
14510251 TTGAGAGCAATTTGAGAGGAAA
1 TTGAGAGAAATTTGAGAGGAAA
14510273 TTGAGA
1 TTGAGA
14510279 AATGATTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 25 0.96
23 1 0.04
ACGTcount: A:0.42, C:0.02, G:0.32, T:0.24
Consensus pattern (22 bp):
TTGAGAGAAATTTGAGAGGAAA
Found at i:14511849 original size:28 final size:26
Alignment explanation
Indices: 14511801--14511899 Score: 80
Period size: 28 Copynumber: 3.6 Consensus size: 26
14511791 TTCATTTATA
14511801 ATTATATTAAATCATTT-AAATATTATTT
1 ATTATATTAAAT--TTTAAAATATT-TTT
14511829 ATTATATTAAAATTTTAAAATA-TTTT
1 ATTATATT-AAATTTTAAAATATTTTT
*
14511855 ATATATCATT-AATTTTACAAATAATTTAT
1 AT-TAT-ATTAAATTTTA-AAAT-ATTTTT
14511884 ATTA-ATTAAAATTTTA
1 ATTATATT-AAATTTTA
14511900 TTTCATATGT
Statistics
Matches: 61, Mismatches: 1, Indels: 18
0.76 0.01 0.22
Matches are distributed among these distances:
26 15 0.25
27 11 0.18
28 26 0.43
29 9 0.15
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (26 bp):
ATTATATTAAATTTTAAAATATTTTT
Found at i:14511931 original size:54 final size:56
Alignment explanation
Indices: 14511790--14511931 Score: 125
Period size: 54 Copynumber: 2.6 Consensus size: 56
14511780 TATTTAAACC
* * *
14511790 TTTCATTTATAATTATATTAAATCATTTAAAT-ATTATTTATTATATTAAAATTTTA
1 TTTCATATATAATTATATT-AATTATTTAAATAATTATATATTATATTAAAATTTTA
** * * *
14511846 --AAATATTTTATATATCATTAATT-TTACAAATAATT-TATATTA-ATTAAAATTTTA
1 TTTCATATATAAT-TAT-ATTAATTATT-TAAATAATTATATATTATATTAAAATTTTA
*
14511900 TTTCATATGTAATTATATTAATTATTTAAATA
1 TTTCATATATAATTATATTAATTATTTAAATA
14511932 TCATATAACT
Statistics
Matches: 66, Mismatches: 13, Indels: 16
0.69 0.14 0.17
Matches are distributed among these distances:
54 32 0.48
55 21 0.32
56 13 0.20
ACGTcount: A:0.43, C:0.04, G:0.01, T:0.53
Consensus pattern (56 bp):
TTTCATATATAATTATATTAATTATTTAAATAATTATATATTATATTAAAATTTTA
Found at i:14518450 original size:19 final size:19
Alignment explanation
Indices: 14518423--14518459 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
14518413 CATGCGAAAG
*
14518423 TTTATATGTTATTATAGTA
1 TTTAAATGTTATTATAGTA
14518442 TTTAAATGTTATTATAGT
1 TTTAAATGTTATTATAGT
14518460 TTATATGGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (19 bp):
TTTAAATGTTATTATAGTA
Found at i:14518936 original size:20 final size:20
Alignment explanation
Indices: 14518911--14518954 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
14518901 TTGTACGGGA
* *
14518911 TTTGCAATTCGGTGCCTCTG
1 TTTGCAATACGGTGCCCCTG
*
14518931 TTTGCACTACGGTGCCCCTG
1 TTTGCAATACGGTGCCCCTG
14518951 TTTG
1 TTTG
14518955 TACATTTGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.09, C:0.27, G:0.25, T:0.39
Consensus pattern (20 bp):
TTTGCAATACGGTGCCCCTG
Found at i:14522083 original size:38 final size:37
Alignment explanation
Indices: 14521998--14522083 Score: 91
Period size: 37 Copynumber: 2.3 Consensus size: 37
14521988 TTTTCCTTTG
*
14521998 GATGTTCCGATGAGTGCTAGGAACAACCTTTACTTCG
1 GATGTTCCGATGAGTGCTAGGAACAACCTTTACTTCA
* * * * ** *
14522035 GTTGTACCGATGAGTGTTGGGCGCAATCTTTTACTTCA
1 GATGTTCCGATGAGTGCTAGGAACAA-CCTTTACTTCA
14522073 GATGTTCCGAT
1 GATGTTCCGAT
14522084 TAGGCACTGA
Statistics
Matches: 38, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
37 20 0.53
38 18 0.47
ACGTcount: A:0.21, C:0.20, G:0.26, T:0.34
Consensus pattern (37 bp):
GATGTTCCGATGAGTGCTAGGAACAACCTTTACTTCA
Found at i:14534631 original size:22 final size:23
Alignment explanation
Indices: 14534606--14534650 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
14534596 ATTTAGAAGA
*
14534606 TGAAGTTAAATCT-AAATTTTTC
1 TGAAGATAAATCTGAAATTTTTC
14534628 TGAAGATAAATCTGAAATTTTTC
1 TGAAGATAAATCTGAAATTTTTC
14534651 CTATCCTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.38, C:0.09, G:0.11, T:0.42
Consensus pattern (23 bp):
TGAAGATAAATCTGAAATTTTTC
Found at i:14537984 original size:123 final size:123
Alignment explanation
Indices: 14537765--14538010 Score: 492
Period size: 123 Copynumber: 2.0 Consensus size: 123
14537755 AGTGCTTTAG
14537765 TAAGAAAATTAGCAATCTGTCATTTTCTAAGAATATAGTTGAGTTGGACAATGTTGTTATTAACC
1 TAAGAAAATTAGCAATCTGTCATTTTCTAAGAATATAGTTGAGTTGGACAATGTTGTTATTAACC
14537830 TTCTCTGAAATGAAGTGTCAATCAATTTCACTGCGTTTTGTCCTGTCATGGTGTACAA
66 TTCTCTGAAATGAAGTGTCAATCAATTTCACTGCGTTTTGTCCTGTCATGGTGTACAA
14537888 TAAGAAAATTAGCAATCTGTCATTTTCTAAGAATATAGTTGAGTTGGACAATGTTGTTATTAACC
1 TAAGAAAATTAGCAATCTGTCATTTTCTAAGAATATAGTTGAGTTGGACAATGTTGTTATTAACC
14537953 TTCTCTGAAATGAAGTGTCAATCAATTTCACTGCGTTTTGTCCTGTCATGGTGTACAA
66 TTCTCTGAAATGAAGTGTCAATCAATTTCACTGCGTTTTGTCCTGTCATGGTGTACAA
14538011 GATTTTTAGC
Statistics
Matches: 123, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
123 123 1.00
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37
Consensus pattern (123 bp):
TAAGAAAATTAGCAATCTGTCATTTTCTAAGAATATAGTTGAGTTGGACAATGTTGTTATTAACC
TTCTCTGAAATGAAGTGTCAATCAATTTCACTGCGTTTTGTCCTGTCATGGTGTACAA
Found at i:14542236 original size:38 final size:38
Alignment explanation
Indices: 14542185--14542264 Score: 133
Period size: 38 Copynumber: 2.1 Consensus size: 38
14542175 TTTTCTAAAG
* *
14542185 ATAAATCTGAAATTACTTACAAATATCCACATACTTGT
1 ATAAATATGAAATTACTTACAAATATCCACATACCTGT
*
14542223 ATAAATATGAAATTACTTACAAATATTCACATACCTGT
1 ATAAATATGAAATTACTTACAAATATCCACATACCTGT
14542261 ATAA
1 ATAA
14542265 GGTTATGCAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.45, C:0.16, G:0.05, T:0.34
Consensus pattern (38 bp):
ATAAATATGAAATTACTTACAAATATCCACATACCTGT
Found at i:14547420 original size:4 final size:4
Alignment explanation
Indices: 14547411--14547437 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
14547401 GTAGAGAGAC
14547411 TAAT TAAT TAAT TAAT TAAT TAAT TAA
1 TAAT TAAT TAAT TAAT TAAT TAAT TAA
14547438 AATTTATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
TAAT
Found at i:14552075 original size:3 final size:3
Alignment explanation
Indices: 14552067--14552122 Score: 85
Period size: 3 Copynumber: 18.7 Consensus size: 3
14552057 TTTATAATGC
* **
14552067 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TGT TAT TAT TCC
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
14552115 TAT TAT TA
1 TAT TAT TA
14552123 ATATAGGTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:14554229 original size:123 final size:123
Alignment explanation
Indices: 14554010--14554357 Score: 633
Period size: 123 Copynumber: 2.8 Consensus size: 123
14554000 TTATTTCGAG
*
14554010 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGTTATTTGAGAAGAAATTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTG
14554075 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTT
66 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTT
*
14554133 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTATACCAGGATGCTATTTGAGAAGAAATTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTG
* * *
14554198 AAATCGTGCCCTTGTGGACGCGATTTTGCTACAGTTGGTCATGTAAGAAATAATTTTT
66 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTT
*
14554256 TTGACATTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTG
*
14554321 AAATCGCGCCCTCGTGTACGCGATTTTGCTACAGTAG
66 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAG
14554358 CAAGTTTGGG
Statistics
Matches: 214, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
123 214 1.00
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (123 bp):
TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTG
AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTT
Found at i:14557482 original size:10 final size:10
Alignment explanation
Indices: 14557467--14557491 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14557457 CAAATCTAAC
14557467 ATTATGTAAA
1 ATTATGTAAA
14557477 ATTATGTAAA
1 ATTATGTAAA
14557487 ATTAT
1 ATTAT
14557492 TAAGTCCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (10 bp):
ATTATGTAAA
Found at i:14557542 original size:18 final size:18
Alignment explanation
Indices: 14557519--14557564 Score: 92
Period size: 18 Copynumber: 2.6 Consensus size: 18
14557509 TTAATGGCTA
14557519 GTAAAATTATCAAATTAT
1 GTAAAATTATCAAATTAT
14557537 GTAAAATTATCAAATTAT
1 GTAAAATTATCAAATTAT
14557555 GTAAAATTAT
1 GTAAAATTAT
14557565 TAAGTCCAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.50, C:0.04, G:0.07, T:0.39
Consensus pattern (18 bp):
GTAAAATTATCAAATTAT
Found at i:14557552 original size:73 final size:74
Alignment explanation
Indices: 14557475--14557619 Score: 249
Period size: 73 Copynumber: 2.0 Consensus size: 74
14557465 ACATTATGTA
14557475 AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGCTAGTAAAATT-ATC-AAATTATG
1 AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGCTAGTAAAATTGA-CGAAATTATG
14557538 TAAAATTATC
65 TAAAATTATC
* *
14557548 AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTGACGGAATTATGT
1 AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGCTAGTAAAATTGACGAAATTATGT
14557613 AAAATTA
66 AAAATTA
14557620 GGTTAGGGTT
Statistics
Matches: 68, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
73 52 0.76
74 16 0.24
ACGTcount: A:0.45, C:0.06, G:0.13, T:0.37
Consensus pattern (74 bp):
AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGCTAGTAAAATTGACGAAATTATGT
AAAATTATC
Found at i:14557647 original size:29 final size:29
Alignment explanation
Indices: 14557614--14557773 Score: 257
Period size: 29 Copynumber: 5.3 Consensus size: 29
14557604 GAATTATGTA
14557614 AAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
14557643 AAATTAGGTTAGGGTTAGGGTTTTGGGTTTTTAATT
1 AAATTAGGTTAGGGTTA-------GGGTTTTTAATT
14557679 AAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
14557708 AAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
14557737 AAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
14557766 AAATTAGG
1 AAATTAGG
14557774 GTTTTTATTA
Statistics
Matches: 124, Mismatches: 0, Indels: 14
0.90 0.00 0.10
Matches are distributed among these distances:
29 95 0.77
36 29 0.23
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.44
Consensus pattern (29 bp):
AAATTAGGTTAGGGTTAGGGTTTTTAATT
Found at i:14557859 original size:36 final size:36
Alignment explanation
Indices: 14557819--14557933 Score: 92
Period size: 36 Copynumber: 3.2 Consensus size: 36
14557809 ATATCAAATA
*
14557819 ATATCAAAATAACTCGAAAAAATTTCTATGCCTATT
1 ATATCAAAATAACTCGAAAAAATTTCTATGCATATT
* **** * * *
14557855 ATATC-AAATAAACTTCTATTTTATTAC-AT-CAAATA
1 ATATCAAAAT-AAC-TCGAAAAAATTTCTATGCATATT
*
14557890 ATATCAAAATAACTCGAAAAAATTTCTATGCGTATT
1 ATATCAAAATAACTCGAAAAAATTTCTATGCATATT
*
14557926 ACATCAAA
1 ATATCAAA
14557934 TAAATTTCTA
Statistics
Matches: 55, Mismatches: 19, Indels: 10
0.65 0.23 0.12
Matches are distributed among these distances:
34 7 0.13
35 17 0.31
36 24 0.44
37 7 0.13
ACGTcount: A:0.46, C:0.16, G:0.04, T:0.34
Consensus pattern (36 bp):
ATATCAAAATAACTCGAAAAAATTTCTATGCATATT
Found at i:14557885 original size:25 final size:25
Alignment explanation
Indices: 14557776--14557961 Score: 90
Period size: 25 Copynumber: 7.7 Consensus size: 25
14557766 AAATTAGGGT
* *
14557776 TTTTATTACATCAAATAGAACTTATA
1 TTTTATTACATCAAATA-AATTTCTA
* *
14557802 TTTTATTATATCAAAT-AATATC-A
1 TTTTATTACATCAAATAAATTTCTA
** *
14557825 --AAATAAC-TCGAAA-AAATTTCTA
1 TTTTATTACATC-AAATAAATTTCTA
** * *
14557847 TGCCTATTATATCAAATAAACTTCTA
1 T-TTTATTACATCAAATAAATTTCTA
*
14557873 TTTTATTACATCAAAT-AATATC-A
1 TTTTATTACATCAAATAAATTTCTA
** *
14557896 --AAATAAC-TCGAAA-AAATTTCTA
1 TTTTATTACATC-AAATAAATTTCTA
**
14557918 TGCGTATTACATCAAATAAATTTCTA
1 T-TTTATTACATCAAATAAATTTCTA
14557944 TTTTATTACATCAAATAA
1 TTTTATTACATCAAATAA
14557962 TAAATTTAAA
Statistics
Matches: 116, Mismatches: 28, Indels: 33
0.66 0.16 0.19
Matches are distributed among these distances:
20 4 0.03
21 23 0.20
22 2 0.02
23 2 0.02
24 7 0.06
25 40 0.34
26 38 0.33
ACGTcount: A:0.45, C:0.13, G:0.03, T:0.39
Consensus pattern (25 bp):
TTTTATTACATCAAATAAATTTCTA
Found at i:14557886 original size:71 final size:71
Alignment explanation
Indices: 14557779--14557963 Score: 316
Period size: 71 Copynumber: 2.6 Consensus size: 71
14557769 TTAGGGTTTT
* *
14557779 TATTACATCAAATAGAACTTATATTTTATTATATCAAATAATATCAAAATAACTCGAAAAAATTT
1 TATTACATCAAATA-AACTTCTATTTTATTACATCAAATAATATCAAAATAACTCGAAAAAATTT
14557844 CTATGCC
65 CTATGCC
*
14557851 TATTATATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCGAAAAAATTTC
1 TATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCGAAAAAATTTC
*
14557916 TATGCG
66 TATGCC
*
14557922 TATTACATCAAATAAATTTCTATTTTATTACATCAAATAATA
1 TATTACATCAAATAAACTTCTATTTTATTACATCAAATAATA
14557964 AATTTAAATA
Statistics
Matches: 107, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
71 94 0.88
72 13 0.12
ACGTcount: A:0.45, C:0.14, G:0.03, T:0.38
Consensus pattern (71 bp):
TATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCGAAAAAATTTC
TATGCC
Found at i:14558392 original size:18 final size:18
Alignment explanation
Indices: 14558365--14558399 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14558355 CGGAAAAGGA
*
14558365 TACATGTAAGGGTTAGGG
1 TACATGTAAGGGCTAGGG
*
14558383 TACATTTAAGGGCTAGG
1 TACATGTAAGGGCTAGG
14558400 AAACACACCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.09, G:0.34, T:0.29
Consensus pattern (18 bp):
TACATGTAAGGGCTAGGG
Found at i:14559061 original size:7 final size:7
Alignment explanation
Indices: 14559051--14559075 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14559041 TTATATACAT
14559051 AATACTA
1 AATACTA
14559058 AATACTA
1 AATACTA
14559065 AATACTA
1 AATACTA
14559072 AATA
1 AATA
14559076 TCAATCGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:14560175 original size:10 final size:10
Alignment explanation
Indices: 14560156--14560221 Score: 51
Period size: 10 Copynumber: 6.5 Consensus size: 10
14560146 GCCATTCATG
*
14560156 AAAATATAAA
1 AAAATTTAAA
14560166 AAAATTTAAA
1 AAAATTTAAA
* *
14560176 ATTATTTTAAA
1 A-AAATTTAAA
* *
14560187 AATATATAAA
1 AAAATTTAAA
14560197 AAAATTTAAA
1 AAAATTTAAA
** *
14560207 ATTATTTTAA
1 AAAATTTAAA
14560217 AAAAT
1 AAAAT
14560222 GAAATTGAGG
Statistics
Matches: 41, Mismatches: 14, Indels: 2
0.72 0.25 0.04
Matches are distributed among these distances:
10 33 0.80
11 8 0.20
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (10 bp):
AAAATTTAAA
Found at i:14560197 original size:31 final size:31
Alignment explanation
Indices: 14560159--14560219 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
14560149 ATTCATGAAA
14560159 ATATAAAAAAATTTAAAATTATTTTAAAAAT
1 ATATAAAAAAATTTAAAATTATTTTAAAAAT
14560190 ATATAAAAAAATTTAAAATTATTTTAAAAA
1 ATATAAAAAAATTTAAAATTATTTTAAAAA
14560220 ATGAAATTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (31 bp):
ATATAAAAAAATTTAAAATTATTTTAAAAAT
Found at i:14560277 original size:29 final size:29
Alignment explanation
Indices: 14560245--14560333 Score: 75
Period size: 29 Copynumber: 3.3 Consensus size: 29
14560235 AATTGAAATT
14560245 AAATATGGATTTGAGAGAATTTTGGAAGG
1 AAATATGGATTTGAGAGAATTTTGGAAGG
* * **
14560274 AAAT-T-GA---GAG-GAA-ATTGAAATT
1 AAATATGGATTTGAGAGAATTTTGGAAGG
*
14560296 AAATATGGGTTTGAGAGAATTTTGGAAGG
1 AAATATGGATTTGAGAGAATTTTGGAAGG
*
14560325 AAATTTGGA
1 AAATATGGA
14560334 AGGAAATTGA
Statistics
Matches: 42, Mismatches: 11, Indels: 14
0.63 0.16 0.21
Matches are distributed among these distances:
22 9 0.21
23 4 0.10
24 4 0.10
27 5 0.12
28 4 0.10
29 16 0.38
ACGTcount: A:0.40, C:0.00, G:0.29, T:0.30
Consensus pattern (29 bp):
AAATATGGATTTGAGAGAATTTTGGAAGG
Found at i:14560277 original size:51 final size:51
Alignment explanation
Indices: 14560222--14560343 Score: 201
Period size: 51 Copynumber: 2.4 Consensus size: 51
14560212 TTTAAAAAAT
*
14560222 GAAATTGAGGGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
1 GAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
*
14560273 GAAATTGAGAGGAAATTGAAATTAAATATGGGTTTGAGAGAATTTTGGAAG
1 GAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
14560324 GAAATTTG-GAAGGAAATTGA
1 GAAA-TTGAG-AGGAAATTGA
14560344 GAAGATTAGA
Statistics
Matches: 67, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
51 54 0.81
52 13 0.19
ACGTcount: A:0.42, C:0.00, G:0.30, T:0.29
Consensus pattern (51 bp):
GAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
Found at i:14560347 original size:12 final size:12
Alignment explanation
Indices: 14560316--14560341 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14560306 TTGAGAGAAT
14560316 TTTGGAAGGAAA
1 TTTGGAAGGAAA
14560328 TTTGGAAGGAAA
1 TTTGGAAGGAAA
14560340 TT
1 TT
14560342 GAGAAGATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.31, T:0.31
Consensus pattern (12 bp):
TTTGGAAGGAAA
Found at i:14561703 original size:19 final size:19
Alignment explanation
Indices: 14561650--14561706 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
14561640 TCATCTTTCA
14561650 ATAAAAATATATA-AGAATTT
1 ATAAAAATATATATA-AA-TT
* *
14561670 ATAATAATACATATAAATT
1 ATAAAAATATATATAAATT
*
14561689 ATAAAAATATTTATAAAT
1 ATAAAAATATATATAAAT
14561707 AAATGAATAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
19 17 0.55
20 13 0.42
21 1 0.03
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (19 bp):
ATAAAAATATATATAAATT
Found at i:14562490 original size:6 final size:6
Alignment explanation
Indices: 14562479--14562538 Score: 120
Period size: 6 Copynumber: 10.0 Consensus size: 6
14562469 TTGTCGAATT
14562479 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA
14562527 TTTTAA TTTTAA
1 TTTTAA TTTTAA
14562539 ATAAACATTT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 54 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
TTTTAA
Found at i:14565337 original size:33 final size:33
Alignment explanation
Indices: 14565276--14565339 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 33
14565266 CATCAGTCCA
14565276 GATTACAAACCAAAATAAATTAAGCCCAAACCC
1 GATTACAAACCAAAATAAATTAAGCCCAAACCC
* * *
14565309 GATTACAAAACCTAAATCATTTAA-CCCAAAC
1 GATTAC-AAACCAAAATAAATTAAGCCCAAAC
14565340 TACCCAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
33 13 0.48
34 14 0.52
ACGTcount: A:0.50, C:0.27, G:0.05, T:0.19
Consensus pattern (33 bp):
GATTACAAACCAAAATAAATTAAGCCCAAACCC
Found at i:14566517 original size:21 final size:22
Alignment explanation
Indices: 14566484--14566524 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
14566474 TATATATATA
*
14566484 TTTACATTATTTTATTATGTTT
1 TTTACATTATTTTATCATGTTT
*
14566506 TTTA-ATTCTTTTATCATGT
1 TTTACATTATTTTATCATGT
14566525 ATTATTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.22, C:0.07, G:0.05, T:0.66
Consensus pattern (22 bp):
TTTACATTATTTTATCATGTTT
Found at i:14570842 original size:27 final size:27
Alignment explanation
Indices: 14570802--14570857 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
14570792 AGGAAAGTTG
*
14570802 CACAGTCGGTTCGTTAACTTACTTCGT
1 CACAGTCGGCTCGTTAACTTACTTCGT
14570829 CACAGTCGGCTCGTTAACTTACTTCGT
1 CACAGTCGGCTCGTTAACTTACTTCGT
14570856 CA
1 CA
14570858 GTAGTTGTCG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.20, C:0.29, G:0.18, T:0.34
Consensus pattern (27 bp):
CACAGTCGGCTCGTTAACTTACTTCGT
Found at i:14574987 original size:3 final size:3
Alignment explanation
Indices: 14574981--14575018 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
14574971 AAGACTTGAG
14574981 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
14575019 GACTATAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:14576544 original size:19 final size:19
Alignment explanation
Indices: 14576507--14576547 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
14576497 ACACTTGTGA
**
14576507 CAAAAAAAAGTTTAAATAC
1 CAAAAAAAAAATTAAATAC
*
14576526 CAAAAAAAAAATTAGATAC
1 CAAAAAAAAAATTAAATAC
14576545 CAA
1 CAA
14576548 TACGTGGATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.66, C:0.12, G:0.05, T:0.17
Consensus pattern (19 bp):
CAAAAAAAAAATTAAATAC
Found at i:14589500 original size:6 final size:6
Alignment explanation
Indices: 14589489--14589547 Score: 111
Period size: 6 Copynumber: 10.0 Consensus size: 6
14589479 ATATATATAC
14589489 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
14589537 ATGTAT -TGTAT
1 ATGTAT ATGTAT
14589548 TTTTACAAAA
Statistics
Matches: 53, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 5 0.09
6 48 0.91
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (6 bp):
ATGTAT
Done.